Query 022912
Match_columns 290
No_of_seqs 228 out of 1545
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3752 Steroid 5-alpha reduct 100.0 6E-62 1.3E-66 431.4 27.2 251 8-264 14-271 (272)
2 PF06966 DUF1295: Protein of u 100.0 2.4E-61 5.2E-66 435.9 24.9 228 25-252 2-235 (235)
3 KOG4650 Predicted steroid redu 100.0 1.3E-51 2.8E-56 364.6 18.5 257 6-268 6-306 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.8 9.5E-20 2.1E-24 177.6 13.7 161 88-259 252-431 (432)
5 COG2020 STE14 Putative protein 99.8 1.5E-17 3.1E-22 145.7 16.4 117 135-260 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.7 4.3E-18 9.2E-23 162.2 8.0 161 88-259 249-427 (428)
7 PF04191 PEMT: Phospholipid me 99.6 1.5E-14 3.3E-19 114.4 10.9 99 138-245 3-106 (106)
8 KOG1638 Steroid reductase [Lip 99.5 2.5E-13 5.4E-18 121.0 10.5 110 136-259 147-256 (257)
9 KOG2628 Farnesyl cysteine-carb 99.4 2.9E-13 6.2E-18 117.1 8.6 111 140-260 85-201 (201)
10 PLN02392 probable steroid redu 99.4 4.8E-12 1E-16 115.6 11.2 110 136-259 150-259 (260)
11 PF04140 ICMT: Isoprenylcystei 99.3 1.2E-11 2.5E-16 96.9 9.4 58 143-200 3-63 (94)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.3 3.1E-11 6.7E-16 102.2 11.2 110 136-259 40-149 (150)
13 PLN02560 enoyl-CoA reductase 99.2 3E-10 6.5E-15 106.7 11.8 114 136-258 192-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 99.1 1.5E-09 3.2E-14 101.5 11.7 113 135-259 208-322 (323)
15 COG1755 Uncharacterized protei 98.8 2.4E-07 5.1E-12 78.6 14.9 96 133-237 66-167 (172)
16 KOG1640 Predicted steroid redu 98.0 0.00043 9.3E-09 63.9 15.5 109 137-259 193-303 (304)
17 KOG1639 Steroid reductase requ 97.6 0.00021 4.5E-09 64.7 7.4 106 138-259 188-297 (297)
18 PF07298 NnrU: NnrU protein; 96.9 0.0032 7E-08 55.5 7.1 94 136-254 68-161 (191)
19 PLN02797 phosphatidyl-N-dimeth 81.2 4.4 9.6E-05 34.5 5.7 61 139-200 67-132 (164)
20 COG4094 Predicted membrane pro 78.7 1.7 3.6E-05 38.6 2.6 76 172-258 98-173 (219)
21 TIGR00026 hi_GC_TIGR00026 deaz 39.2 22 0.00048 28.5 2.0 21 235-258 89-109 (113)
22 COG3462 Predicted membrane pro 36.3 1.3E+02 0.0028 24.3 5.8 12 229-240 88-99 (117)
23 COG1133 SbmA ABC-type long-cha 30.2 98 0.0021 29.6 4.9 82 109-191 208-313 (405)
24 KOG4142 Phospholipid methyltra 28.4 4E+02 0.0086 23.2 12.2 64 137-200 97-165 (208)
25 PF04075 DUF385: Domain of unk 26.9 56 0.0012 26.9 2.5 21 235-258 107-127 (132)
26 PF15113 TMEM117: TMEM117 prot 26.8 1E+02 0.0022 29.9 4.5 59 57-116 61-119 (415)
27 PF05975 EcsB: Bacterial ABC t 26.5 1.4E+02 0.0029 28.9 5.5 21 180-200 275-295 (386)
28 PF10176 DUF2370: Protein of u 25.5 1E+02 0.0022 28.1 4.1 31 2-32 81-112 (233)
29 COG3162 Predicted membrane pro 22.6 4E+02 0.0086 21.2 7.9 63 91-154 12-80 (102)
30 PF03818 MadM: Malonate/sodium 21.8 2.3E+02 0.0051 20.3 4.5 52 3-57 6-57 (60)
31 PF11361 DUF3159: Protein of u 21.6 5.5E+02 0.012 22.5 13.0 34 22-55 38-71 (187)
32 COG2510 Predicted membrane pro 21.1 5E+02 0.011 21.8 7.9 55 16-70 75-130 (140)
33 KOG1582 UDP-galactose transpor 20.4 1.2E+02 0.0026 28.7 3.6 38 10-47 45-82 (367)
No 1
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=6e-62 Score=431.40 Aligned_cols=251 Identities=30% Similarity=0.566 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhcC
Q 022912 8 HFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILN 87 (290)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~ 87 (290)
++....+++.++.+.+.|++|..+||++++|..||.++++.++..+..+.....|+++++.++++||+||+.|+++|..+
T Consensus 14 ~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~ 93 (272)
T COG3752 14 MVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRG 93 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44566777778888999999999999999999999999999988877776666899999999999999999999999999
Q ss_pred cCcchhhHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022912 88 WGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKL 160 (290)
Q Consensus 88 ~~eD~Ry~~~r~~~~~-------~~~~~~~Q~~lv~l~~lP~~~~~~~~~~~~l~~~~~~g~~l~~~G~~le~~Ad~Ql~ 160 (290)
+|||+||.++|+++++ ++.++.+|+++.+++++|++.++.. .+.++.+.|++|++++++|+.+|+++|.|+.
T Consensus 94 ~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~lgD~QL~ 172 (272)
T COG3752 94 KGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEALGDAQLW 172 (272)
T ss_pred CCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999998764 5677899999999999999998765 3556899999999999999999999999999
Q ss_pred hcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcC
Q 022912 161 SFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFG 240 (290)
Q Consensus 161 ~F~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sgi~~~E~~~~~kyG 240 (290)
.||++|+||||+|++|+||+|||||||||.|+|||+++++++- ....+++.+|++|+.++.++||+|..||++.|.
T Consensus 173 ~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~--~~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~-- 248 (272)
T COG3752 173 VFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISE--WLLLWAVASPLLMTWLLVHVSGVPPLEEKMLKS-- 248 (272)
T ss_pred HHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhh--hhHhhhcccHHHHHHHHHHhcCCChHHHHHhcc--
Confidence 9999999999999999999999999999999999999998752 222346789999999999999999555554443
Q ss_pred CchHHHHHHhhCCcccccCCCCCC
Q 022912 241 NMPAYRLYKKTTSPLIPLPPVVYG 264 (290)
Q Consensus 241 ~~~~Y~~Y~k~t~~fiP~~~~~~~ 264 (290)
+|+|++||+||++|+|++|++..
T Consensus 249 -r~~fr~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 249 -RPGFREYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred -cHhHHHHHHHhcccCCCCCcccC
Confidence 39999999999999999999854
No 2
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=2.4e-61 Score=435.86 Aligned_cols=228 Identities=43% Similarity=0.932 Sum_probs=211.7
Q ss_pred HHHHHHhccCeEeecccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhcCcCcchhhHHHHHhhh--
Q 022912 25 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 102 (290)
Q Consensus 25 ~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~-- 102 (290)
|++|..+||+++||++||++++++++.++..+++.+.|++++++++++||+||+.|+++|..+++||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 678999999999999999999999999988888889999999999999999999999999888899999999999863
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCcc
Q 022912 103 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 178 (290)
Q Consensus 103 ----~~~~~~~~Q~~lv~l~~lP~~~~~~~~~~~~l~~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkli~~Glw 178 (290)
+++.+|++|+++++++++|+++++..+.+++++..|++|++++++|+.+|++||.||.+||++|+|+||+|++|+|
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 5678899999999999999999886545567899999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhC
Q 022912 179 KYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 252 (290)
Q Consensus 179 ~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t 252 (290)
+||||||||||+++|+|+++++.+...+..++++++|+++++++++++|+|++|+++.||||++|+|+||||+|
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 99999999999999999999987764443457889999999999999999999999999999999999999997
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=1.3e-51 Score=364.61 Aligned_cols=257 Identities=60% Similarity=1.053 Sum_probs=215.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhccCeEee-cccccHHHHHHHHHHHHh----------------------------
Q 022912 6 DSHFLALTAIVTVGYQLLFFVITALFKFDKVTD-FAGSTNFIIIALLTLILK---------------------------- 56 (290)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~w~~~~~~~~~~~~~~~---------------------------- 56 (290)
+++......++....|.++|.+-...|-++..| .+.+..|++.+++++..+
T Consensus 6 ~s~~a~~~vav~~~l~~i~f~~t~l~~~~~~tD~~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W~ilp~~~~~~f~~~~ 85 (311)
T KOG4650|consen 6 ASDAAKWKVAVSVYLQFIFFVITALFKFDQVTDFFANTTNFVILAVLTLVLGLWGVSVWTKDRLWHILPTAFSLHFLFYG 85 (311)
T ss_pred cCchhceeeeeeccHHHHHHHHHHHhccchHHHHHcCCchHHHHHHHHHHHHhccccceecccceeechHHHHHHHhhcc
Confidence 444455566667778888888888888888888 666777787777776542
Q ss_pred --CCchhHHHHHHHHHHHHHHHHhHHHHHh-hcCcC-cchhhHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhh
Q 022912 57 --GSWHFRQVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVN 126 (290)
Q Consensus 57 --~~~~~r~~l~~~lv~~W~~RL~~~l~~R-~~~~~-eD~Ry~~~r~~~~~------~~~~~~~Q~~lv~l~~lP~~~~~ 126 (290)
+-.+.|+++++.++++|++|||++.++| ++.+| ||+||+++|++.+| ++.+|.+|+++++.+++|+|+++
T Consensus 86 l~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~ 165 (311)
T KOG4650|consen 86 LYNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVN 165 (311)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheee
Confidence 1124599999999999999999999999 67788 99999999999998 67889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCc-ccccCccccccCchhHHHHHHHHHHHHHhcC
Q 022912 127 ASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTP 202 (290)
Q Consensus 127 ~~~~~~~l~~~~~~g~~l~~~G~~le~~Ad~Ql~~F~---~~~~~~gk-li~~Glw~~sRHPNY~ge~l~w~G~~l~~~~ 202 (290)
++..+..+++.|++|+.+++.|+++|..||+||.+|+ .+++|.|| .|++|+|||||||||+||++.|||+++++.+
T Consensus 166 ~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 166 ASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred ecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 8765556899999999999999999999999999998 56677888 9999999999999999999999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccc-cCCCCCCCCcH
Q 022912 203 VLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIP-LPPVVYGNLPW 268 (290)
Q Consensus 203 ~~~~~~~~~~~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP-~~~~~~~~~~~ 268 (290)
...|..|..+.++++.++++.+.+++ |+...||| |.|+.|||+|++||| +.|+.....+|
T Consensus 246 ~~egl~wtvi~~lv~~~~l~~~t~li---e~~~v~~~---~aYR~Yqktts~~ip~~f~sh~d~~~d 306 (311)
T KOG4650|consen 246 VLEGLEWTVIAGLVFLTLLLLFTSLI---ELLEVEKY---PAYRVYQKTTSRFIPRLFPSHWDNVDD 306 (311)
T ss_pred hhccchHHHHHHHHHHHHHHHHHhhh---hhhhhhhh---HHHHHHHhcccccccccchhhHhcCCc
Confidence 77776676777888877777765544 54545787 899999999999999 66666655554
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.82 E-value=9.5e-20 Score=177.62 Aligned_cols=161 Identities=25% Similarity=0.324 Sum_probs=115.6
Q ss_pred cCcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHH-HH-HHHHHHHHHHHHHHHHHHHHHhc
Q 022912 88 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV-DV-IGWIMWSVGVSIEAIADQQKLSF 162 (290)
Q Consensus 88 ~~eD---~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lP~~~~~~~~~~~~l~~~-~~-~g~~l~~~G~~le~~Ad~Ql~~F 162 (290)
+.|| ..+|...++.|.+..++.+-.+-...++.+.|++.+ + .++++. .. .-.++.++|+.+...||.||..|
T Consensus 252 ~~E~~~l~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~F 328 (432)
T PF01222_consen 252 WNEEGYLTTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRF 328 (432)
T ss_pred HhhhhhheeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHh
Confidence 3566 567888888885444443333333333344444433 2 234444 23 33467789999999999999999
Q ss_pred CCCCC-------------CCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch
Q 022912 163 KNSPE-------------NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP 229 (290)
Q Consensus 163 ~~~~~-------------~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sgi~ 229 (290)
|++|+ +..|++.+|.|+++|||||+||+++-+++++.+.- + .......|++++++++.. ..
T Consensus 329 R~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf---~-~~~pyfy~~~~~~lL~hR--~~ 402 (432)
T PF01222_consen 329 RRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGF---S-SILPYFYPIFFTILLIHR--AR 402 (432)
T ss_pred cCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhc---C-ccHHHHHHHHHHHHHhhh--HH
Confidence 97542 23479999999999999999999999988876521 1 234556788877777765 48
Q ss_pred HHHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 022912 230 LLEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (290)
Q Consensus 230 ~~E~~~~~kyG~~~~Y~~Y~k~t~-~fiP~~ 259 (290)
++|++|.+||| ++|+||+++|| ++||++
T Consensus 403 RD~~rC~~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 403 RDEERCRKKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred HHHHHHHHhhC--HHHHHHHHhCCEEEeCCc
Confidence 88999999999 99999999997 799974
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.5e-17 Score=145.68 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHH
Q 022912 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (290)
Q Consensus 135 ~~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~---~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~ 211 (290)
.+...+|..+..+|..+..++..++.+... ++++.++++++|+|+++|||.|+|.++..+|..+...+ ++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~------~~~ 140 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGS------LWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHh------HHH
Confidence 456788999999999999999999866532 22456789999999999999999999999998865322 333
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 022912 212 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (290)
Q Consensus 212 ~~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~~ 260 (290)
+++.+.....+ +.-.+..||+.+.+++| ++|+||+|||++++|++.
T Consensus 141 l~~~~~~~~~~-~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 141 LLIFVVLVALL-FLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCCC
Confidence 32222212222 12246888888999999 899999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.73 E-value=4.3e-18 Score=162.23 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=114.5
Q ss_pred cCcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 022912 88 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSFK 163 (290)
Q Consensus 88 ~~eD---~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lP~~~~~~~~~~~~l~~~~~~g~-~l~~~G~~le~~Ad~Ql~~F~ 163 (290)
++|| .-+|.-+++.|.+..++-+-.+-....+...|+..+ + .++++....++ ++.++|+.+...||.||..||
T Consensus 249 w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h-p--v~l~~~~a~~i~~l~l~gyyifr~an~QK~~FR 325 (428)
T KOG1435|consen 249 WNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH-P--VELGWPMAVGILVLLLLGYYIFRGANAQKNEFR 325 (428)
T ss_pred hhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC-c--cccchHHHHHHHHHHHhheeEeeccchhHHHHh
Confidence 4566 567777888775544443333333323333344433 2 34555444444 667889999999999999999
Q ss_pred CCC-------------CCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchH
Q 022912 164 NSP-------------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPL 230 (290)
Q Consensus 164 ~~~-------------~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sgi~~ 230 (290)
+++ .+.+++.+||.|+++|||||+||++..+++++.+.- + +.+....+++++++++.. ..+
T Consensus 326 kn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf---~-s~lpyfy~iyf~~LLvhR--~~R 399 (428)
T KOG1435|consen 326 KNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGF---N-SPLPYFYPIYFTLLLVHR--AAR 399 (428)
T ss_pred cCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccC---C-CCcchHHHHHHHHHHHHH--Hhh
Confidence 873 245789999999999999999999999888876421 1 123445677777777765 478
Q ss_pred HHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 022912 231 LEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (290)
Q Consensus 231 ~E~~~~~kyG~~~~Y~~Y~k~t~-~fiP~~ 259 (290)
.|.++.+||| ++|+||++++| +++|..
T Consensus 400 De~rC~~KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 400 DEHRCRSKYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred hHHHHHHHHh--hhHHHHHhhCCcccCCCC
Confidence 8999999999 99999999997 788864
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.58 E-value=1.5e-14 Score=114.45 Aligned_cols=99 Identities=25% Similarity=0.451 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHH
Q 022912 138 DVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (290)
Q Consensus 138 ~~~g~~l~~~G~~le~~Ad~Ql~~F~~~---~--~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~ 212 (290)
.++|+.+.++|..+...+-.++...+.. + +++++++++|+|+++|||.|+|.++.++|+++...+ ++.+
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s------~~~l 76 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS------WLGL 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc------HHHH
Confidence 5789999999999999998888765532 1 345679999999999999999999999999987532 2222
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHH
Q 022912 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAY 245 (290)
Q Consensus 213 ~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y 245 (290)
+..+...+ ......+..||+.+.++|| ++|
T Consensus 77 ~~~~~~~~-~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 77 LLAVLAFL-LYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHhC--cCC
Confidence 22222222 2222334578888999999 666
No 8
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.47 E-value=2.5e-13 Score=120.98 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022912 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (290)
Q Consensus 136 ~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (290)
+...+|..+++.|..++..+|..+.+.|++.+++-|+.+.|+|.|+-+|||+||++.|+|+++.+.+ +-++...
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~~aFa 220 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPALAFA 220 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHHHHHH
Confidence 3668999999999999999999999999987777799999999999999999999999999987643 1111222
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 216 l~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
++ + +.+..+..+..+ +.|- +.++||.|..+.+||++
T Consensus 221 ~f-t--~~~l~pRA~ahH---~WY~--~kFe~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 221 FF-T--ICNLGPRAYAHH---KWYL--KKFEDYPKNRKALIPFV 256 (257)
T ss_pred HH-H--HHHhhHHHHHHH---HHHH--HhhccCCccceeecccc
Confidence 22 2 223333333332 3442 45679999999999985
No 9
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.9e-13 Score=117.09 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-c----CCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022912 140 IGWIMWSVGVSIEAIADQQKLS-F----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (290)
Q Consensus 140 ~g~~l~~~G~~le~~Ad~Ql~~-F----~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (290)
+|..+..+|-+...+|..+... | ++++...++++++|+|+|+|||.|.|-++-|.|..++-.+ .++++.
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n------pis~v~ 158 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN------PISLVA 158 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC------HHHHHH
Confidence 5555666666666666666532 2 2234556789999999999999999988777777665332 223222
Q ss_pred HHHHHHHHHHHh-CchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 022912 215 PIFLTLLLLFIS-GIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (290)
Q Consensus 215 pl~~~~ll~~~s-gi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~~ 260 (290)
+...++.+++ .++.||+.+.+-+| ++|.||+|+|+.=||+.+
T Consensus 159 --f~~V~w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 159 --FLLVVWRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCCC
Confidence 2234455554 46777777989999 999999999986688764
No 10
>PLN02392 probable steroid reductase DET2
Probab=99.36 E-value=4.8e-12 Score=115.62 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022912 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (290)
Q Consensus 136 ~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (290)
+..++|++++++|..++..+|.++.+.|+++ ++.++.+.|+|+++.+|||+||++.|.|+++++.+ +.+.+..
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s------~~~~~F~ 222 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS------WAGFGFF 222 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3568999999999999999999999999764 45579999999999999999999999999987632 1111111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 216 l~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
+. ++.-+. .......+...|||| +||.|+.+++||++
T Consensus 223 ~~-~~~nl~-~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 223 LY-TCSNLV-PRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred HH-HHHHHH-HHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 11 111111 011222333445554 36878889999985
No 11
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.31 E-value=1.2e-11 Score=96.86 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---CCCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 022912 143 IMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (290)
Q Consensus 143 ~l~~~G~~le~~Ad~Ql~~F~~~---~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~ 200 (290)
+++++|..+...|..++.++-+. ..++++++|+|+||++|||||+|.++...|.....
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll 63 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLL 63 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHH
Confidence 45788999999999999654332 23566899999999999999999766666655443
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.28 E-value=3.1e-11 Score=102.16 Aligned_cols=110 Identities=20% Similarity=0.407 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022912 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (290)
Q Consensus 136 ~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (290)
...++|++++++|...+..+|.++.+.|++.+++.++.+.|+++++.+|||++|++.|.|+++++.+ +.+....
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~------~~~~~f~ 113 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGS------WPSYAFA 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhh------hhhHHHH
Confidence 5678999999999999999999999988876667789999999999999999999999999987632 1111111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 216 l~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
++. ....+ +...+ ..+.|- ++++||.|+.+++||++
T Consensus 114 ~~~---~~~l~--~~A~~-~h~wY~--~~F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 114 LFV---VVNLS--PRAVQ-THRWYK--KKFKEYPKNRKALIPFI 149 (150)
T ss_pred HHH---HHHHH--HHHHH-HHHHHH--HHCccccCCCeEecCcc
Confidence 111 11111 11111 224452 56789999999999985
No 13
>PLN02560 enoyl-CoA reductase
Probab=99.15 E-value=3e-10 Score=106.66 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022912 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (290)
Q Consensus 136 ~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~-~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (290)
...++|++++++|...+..+|.++++.|++ .+++.++...|+++++-+|||++|++.|+|+++++.+ +.+++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~------~~~~~F 265 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT------VAGYLF 265 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc------HHHHHH
Confidence 345899999999999999999999999976 4455679999999999999999999999999998632 111111
Q ss_pred HHHHHHHHHHHhC-chHHHHHHHHHcCCchHHHHHHhhCCccccc
Q 022912 215 PIFLTLLLLFISG-IPLLEESADKKFGNMPAYRLYKKTTSPLIPL 258 (290)
Q Consensus 215 pl~~~~ll~~~sg-i~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~ 258 (290)
.++.+ ..... ....++...++|+|.+..++|.||..+++|+
T Consensus 266 ~~~~~---~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 266 LAVAA---AIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 11111 11111 1233555667775322334588766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=99.06 E-value=1.5e-09 Score=101.54 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHH
Q 022912 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (290)
Q Consensus 135 ~~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~--~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~ 212 (290)
++.+++|++++++|...+..+|..+.+.|+++ +++.++.+.|+++++-+|||++|++.|.|+++++.+. ...++.+
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~ 285 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT--DLTIWLL 285 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHH
Confidence 34579999999999999999999999998532 3345799999999999999999999999999876321 1111111
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 213 ~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
+. +.. ...+ +... ...+.|. ++++||.|+..++||++
T Consensus 286 ~~--~v~---~nL~--~~A~-~tHkWY~--kkF~dYPk~RkAIIPfI 322 (323)
T PLN03164 286 FG--FVV---ANLT--FAAA-ETHRWYL--QKFENYPRNRYAIIPFV 322 (323)
T ss_pred HH--HHH---HHHH--HHHH-HHHHHHH--HhccccccCceEecCcc
Confidence 11 111 1111 1111 1223442 45667999889999985
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=2.4e-07 Score=78.62 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccccCccccccCchhHH-HHHHHHHHHHHhcCccCchh
Q 022912 133 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 208 (290)
Q Consensus 133 ~l~~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~---~~~gkli~~Glw~~sRHPNY~g-e~l~w~G~~l~~~~~~~~~~ 208 (290)
..++..++|++++++...+..++-.++.++.+.+ -+.++.+++|+||+.|||||+- .+.--.|+.+++- .
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 3456678899999999999999999998887653 3567899999999999999999 5555667777652 2
Q ss_pred HHH--HHHHHHHHHHHHHHhCchHHHHHHHH
Q 022912 209 WLV--ILGPIFLTLLLLFISGIPLLEESADK 237 (290)
Q Consensus 209 ~~~--~~~pl~~~~ll~~~sgi~~~E~~~~~ 237 (290)
|.+ +..|+. .+++++ .++-||+.+.+
T Consensus 140 ~~Ta~l~~p~y--a~~L~v-RIr~EekaL~~ 167 (172)
T COG1755 140 WYTALLFSPIY--ALLLYV-RIRQEEKALAE 167 (172)
T ss_pred HHHHHHHHHHH--HHHHhh-hhhHHHHHHHH
Confidence 333 344543 333433 35555555543
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.95 E-value=0.00043 Score=63.89 Aligned_cols=109 Identities=17% Similarity=0.348 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022912 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (290)
Q Consensus 137 ~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~--~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (290)
.+++|.++++.|-.=+.-++.++.+-|++|. .+..+++.|.++++..|||++|+++..|++..+.. ..+|.+++
T Consensus 193 ~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~----~~iwLv~~ 268 (304)
T KOG1640|consen 193 LQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD----LTIWLVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 6789999999999988888888888887654 23457899999999999999999999997664322 12333333
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 215 pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
-++.- +. ..-.|.+ +-| .+.+++|.+....+||++
T Consensus 269 ~V~~N--~t----~aA~~Th--~wY--~~kF~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 269 WVAAN--LT----YAALETH--RWY--LKKFENYPKNRHAIIPFL 303 (304)
T ss_pred HHHHH--HH----HHHHHHH--HHH--HHhhccCccccccccccc
Confidence 33211 11 1222322 233 255779999999999974
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.59 E-value=0.00021 Score=64.68 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cccC-ccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022912 138 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKW-CNVG-FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (290)
Q Consensus 138 ~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkl-i~~G-lw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (290)
..+|++.++++.+.+.-++.-+++.|...+++.++ ...| ++.++.+|||+-|+..|+|+.++.-. + .+-
T Consensus 188 ~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~------l---~a~ 258 (297)
T KOG1639|consen 188 VKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQC------L---AAY 258 (297)
T ss_pred hhhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHH------H---HHH
Confidence 35666666666666555666666666543434444 3457 89999999999999999999887521 1 111
Q ss_pred HHHHHHHHHHhCchHHH--HHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 216 IFLTLLLLFISGIPLLE--ESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 216 l~~~~ll~~~sgi~~~E--~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
++ +.++...|.- +.-.++|- +|+.+|.++...+||++
T Consensus 259 lF-----l~vg~aqMtiWA~~Kh~~yl--KeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 259 LF-----LTVGAAQMTIWAKGKHRRYL--KEFPDYPRRRKIIIPFV 297 (297)
T ss_pred HH-----HHHHHHHHHHHHHhhhHhHh--hhcccCCccccccCCCC
Confidence 11 1111111211 11224553 78889999999999974
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=96.88 E-value=0.0032 Score=55.46 Aligned_cols=94 Identities=20% Similarity=0.342 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022912 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (290)
Q Consensus 136 ~~~~~g~~l~~~G~~le~~Ad~Ql~~F~~~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (290)
+...+...++.+++++-..+..+...|. +++++|||.+.|..+ |...=+.. +.. .... .+.+.
T Consensus 68 ~~~~l~~~lm~~a~il~~~a~~~~~~~~-------------i~r~~RHP~l~g~~l-WA~aHLl~-nGd-~~~~-lLFg~ 130 (191)
T PF07298_consen 68 WLRHLANLLMLLAFILLVAALFPPNPFS-------------IYRITRHPMLLGVLL-WALAHLLA-NGD-LASL-LLFGG 130 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCcchH-------------HHHHhcCchHHHHHH-HHHHHhhh-cCc-HHHH-HHHHH
Confidence 3445556677777776555544222111 999999999999764 43221222 211 1112 22333
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCc
Q 022912 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSP 254 (290)
Q Consensus 216 l~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~ 254 (290)
.. ...+.++..+|++ .+ +| ++|++|+++|+.
T Consensus 131 ~~----~~al~~~~~~~rr-~~-~g--~~~~~~~~~~s~ 161 (191)
T PF07298_consen 131 FL----AWALIGIILIDRR-RR-FG--DAWRAYPRRTSI 161 (191)
T ss_pred HH----HHHHHHHHHHHHh-hc-cc--cccccccCCCCC
Confidence 22 2223356778888 55 87 789999999874
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=81.15 E-value=4.4 Score=34.48 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 022912 139 VIGWIMWSVGVSIEAIADQQKLSFKNSP-----ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (290)
Q Consensus 139 ~~g~~l~~~G~~le~~Ad~Ql~~F~~~~-----~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~ 200 (290)
..+++++.+|-++...+.+++..-.+.- ... .-+|+=++++.+||+|-|..+..+|.++.-
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 5788999999999999988886433210 112 267777999999999999999999988764
No 20
>COG4094 Predicted membrane protein [Function unknown]
Probab=78.70 E-value=1.7 Score=38.57 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=43.4
Q ss_pred ccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhh
Q 022912 172 WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 251 (290)
Q Consensus 172 li~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~ 251 (290)
.-.+++=+.+|||.-.|..+-..|=.+. +.. ..+..+..+ +++..+.+++..|++..+||| +++..=+++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~iWalaHll~--nGd-~~Svllfgg-----f~l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ 167 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVIWALAHLLA--NGD-TFSVLLFGG-----FLLWAVVGVWSGDRRARKRYG--EAFVAPVQV 167 (219)
T ss_pred ccCCceEEEecCchhHHHHHHHHHHhhc--cCc-eeeHHHHHH-----HHHHHHHHhhhhhhhhhcccC--cceeeeecc
Confidence 3345566899999998876422222221 111 111212122 222334467888999999999 777777776
Q ss_pred CCccccc
Q 022912 252 TSPLIPL 258 (290)
Q Consensus 252 t~~fiP~ 258 (290)
|++ +|+
T Consensus 168 ts~-~pf 173 (219)
T COG4094 168 TSR-IPF 173 (219)
T ss_pred ccc-cch
Confidence 664 454
No 21
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=39.24 E-value=22 Score=28.54 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=16.7
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022912 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~~fiP~ 258 (290)
+.++| |.|++|+++|.+=||-
T Consensus 89 ~~~~~---p~~~~yq~~t~R~ipv 109 (113)
T TIGR00026 89 VVRLY---PRYGRYQSRTDRPIPV 109 (113)
T ss_pred HHHHC---cCHHHHHhhCCCcccE
Confidence 34566 7899999999987774
No 22
>COG3462 Predicted membrane protein [Function unknown]
Probab=36.32 E-value=1.3e+02 Score=24.31 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.6
Q ss_pred hHHHHHHHHHcC
Q 022912 229 PLLEESADKKFG 240 (290)
Q Consensus 229 ~~~E~~~~~kyG 240 (290)
-..|+.+.|||-
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 456777888883
No 23
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=30.16 E-value=98 Score=29.62 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC-C-C----CCcHHHHHHHHHHHHHHHHHHHHH---------HHH--HhcCCC------
Q 022912 109 IFQAVWVWTVSLPVTVVNASDR-D-P----SVQAVDVIGWIMWSVGVSIEAIAD---------QQK--LSFKNS------ 165 (290)
Q Consensus 109 ~~Q~~lv~l~~lP~~~~~~~~~-~-~----~l~~~~~~g~~l~~~G~~le~~Ad---------~Ql--~~F~~~------ 165 (290)
+.++++-.+..+|++...+... + | -...+.+++++..+.|..+-+... .|+ ..+|++
T Consensus 208 fi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgED 287 (405)
T COG1133 208 FINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGED 287 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCC
Confidence 4566666667788887554321 1 1 113455666665666665544442 233 234432
Q ss_pred CCCCCc-ccccCccccccCchhHHHHH
Q 022912 166 PENRGK-WCNVGFWKYSRHPNYFGEIF 191 (290)
Q Consensus 166 ~~~~gk-li~~Glw~~sRHPNY~ge~l 191 (290)
.+++.+ --..-+++=+|| ||+---.
T Consensus 288 h~drA~p~T~~ELf~nvr~-NYfRLyf 313 (405)
T COG1133 288 HADRATPPTVRELFSNVRK-NYFRLYF 313 (405)
T ss_pred chhhcCCchHHHHHHHHHH-HHHHHHH
Confidence 112222 223457888888 8876543
No 24
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=28.44 E-value=4e+02 Score=23.20 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCcccccCccccccCchhHHHHHHHHHHHHHh
Q 022912 137 VDVIGWIMWSVGVSIEAIADQQKLS---FKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (290)
Q Consensus 137 ~~~~g~~l~~~G~~le~~Ad~Ql~~---F~~~~--~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~ 200 (290)
..-+|.+++.+|.++..-+..-+.- |-.|- --+.+=++.=+++..-+|+|-|.-+..+|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 4468888888888876666554431 11110 0012234555899999999999999999999873
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=26.89 E-value=56 Score=26.90 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.2
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022912 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~~fiP~ 258 (290)
..++| |.|++|+++|.+=||-
T Consensus 107 ~~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS---THHHHHHHHCSSTS-E
T ss_pred HHHHC---cChHHhcccCCCEeeE
Confidence 34667 8999999999987873
No 26
>PF15113 TMEM117: TMEM117 protein family
Probab=26.76 E-value=1e+02 Score=29.93 Aligned_cols=59 Identities=25% Similarity=0.512 Sum_probs=39.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHhhcCcCcchhhHHHHHhhhhHHHHHHHHHHHHH
Q 022912 57 GSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVW 116 (290)
Q Consensus 57 ~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~~~~~~~~~Q~~lv~ 116 (290)
+++..-+.++-++.+++|++.+.|++.|.+ -+.|-|-+.+|++.|++...|+.-.+..+
T Consensus 61 ~gw~~LKv~lwllai~~GL~~GKfl~H~~L-fg~~~rlkmf~ed~Gswm~mF~stil~lF 119 (415)
T PF15113_consen 61 GGWRALKVLLWLLAIFTGLIAGKFLFHQRL-FGQLLRLKMFREDHGSWMTMFLSTILFLF 119 (415)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhcccCCceehHHHHHHHHHH
Confidence 344555666777899999999999987743 25566777788887775544444333333
No 27
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=26.50 E-value=1.4e+02 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=15.5
Q ss_pred cccCchhHHHHHHHHHHHHHh
Q 022912 180 YSRHPNYFGEIFLWWGIFVAS 200 (290)
Q Consensus 180 ~sRHPNY~ge~l~w~G~~l~~ 200 (290)
+.|++.|+|-.+--.++....
T Consensus 275 flR~~ey~gl~lRL~~i~~l~ 295 (386)
T PF05975_consen 275 FLRSGEYLGLYLRLTLIGALL 295 (386)
T ss_pred HHhCccHHHHHHHHHHHHHHH
Confidence 569999999887766555443
No 28
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=25.53 E-value=1e+02 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCcCChhh-HHHHHHHHHHHHHHHHHHHHHhc
Q 022912 2 GTVIDSHF-LALTAIVTVGYQLLFFVITALFK 32 (290)
Q Consensus 2 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 32 (290)
|.++|+.. +...++|++..|+++|++..++.
T Consensus 81 glpvG~~~~F~~n~~vs~~Fq~iGFllty~l~ 112 (233)
T PF10176_consen 81 GLPVGNDFSFVWNFLVSFSFQWIGFLLTYCLH 112 (233)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555 77888999999999999877653
No 29
>COG3162 Predicted membrane protein [Function unknown]
Probab=22.57 E-value=4e+02 Score=21.16 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=31.0
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCC-CCcHHHHHHHHHHHHHHHHHHH
Q 022912 91 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAI 154 (290)
Q Consensus 91 D~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lP~~~~~~~-----~~~~-~l~~~~~~g~~l~~~G~~le~~ 154 (290)
.+||.+++++..+|... +.-..+++.+++|++.+... +..+ +.++-..+|+..++.++++..+
T Consensus 12 ~p~f~eLv~kr~~Fa~~-ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 12 NPRFRELVRKRRRFAVP-LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred CHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 47899998876544211 11122233344444433211 1111 2344456777777777776554
No 30
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.75 E-value=2.3e+02 Score=20.31 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=33.1
Q ss_pred CcCChhhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHHHHhC
Q 022912 3 TVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKG 57 (290)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~ 57 (290)
+++..+-|-.++++.-.++++.+.+|...-+-++= +|.--++.++..++.++
T Consensus 6 ~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Grih---GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 6 KVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGRIH---GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHcc
Confidence 34556667788888888899999999766555554 44433444444444443
No 31
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=21.60 E-value=5.5e+02 Score=22.47 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCeEeecccccHHHHHHHHHHHH
Q 022912 22 LLFFVITALFKFDKVTDFAGSTNFIIIALLTLIL 55 (290)
Q Consensus 22 ~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~ 55 (290)
.+...+-...|.++.-....++.-+..+......
T Consensus 38 a~~~~v~RL~r~~~~~~a~~gl~gV~i~a~~A~~ 71 (187)
T PF11361_consen 38 AVVIVVWRLVRRESVQPALSGLFGVAISAAIAWR 71 (187)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3444556777878877766666555444433333
No 32
>COG2510 Predicted membrane protein [Function unknown]
Probab=21.06 E-value=5e+02 Score=21.76 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHH-HHhCCchhHHHHHHHHH
Q 022912 16 VTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTL-ILKGSWHFRQVVLTFLA 70 (290)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~-~~~~~~~~r~~l~~~lv 70 (290)
++-+..++.|..+...++.+.|-..=....++.++++. .+++..+.++++=.+++
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI 130 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLI 130 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44556667777777777777776666666666666653 34555555555444443
No 33
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=20.42 E-value=1.2e+02 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHH
Q 022912 10 LALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFII 47 (290)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~ 47 (290)
+..++.+-++.-.-++.=..+.+.+++-...|-++++=
T Consensus 45 lic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQ 82 (367)
T KOG1582|consen 45 LICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQ 82 (367)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHH
Confidence 34444444444444555567778888888888887654
Done!