Query 022912
Match_columns 290
No_of_seqs 228 out of 1545
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 6.8E-25 2.3E-29 191.7 18.6 115 135-259 75-193 (194)
2 3r5y_A Putative uncharacterize 67.4 2.9 0.0001 34.1 2.5 22 235-259 121-142 (147)
3 3r5z_A Putative uncharacterize 60.7 4.7 0.00016 32.8 2.6 22 235-259 119-140 (145)
4 3h96_A F420-H2 dependent reduc 60.3 4.9 0.00017 32.6 2.6 22 235-259 115-138 (143)
5 3r5l_A Deazaflavin-dependent n 57.7 1.6 5.4E-05 34.6 -0.8 21 235-258 97-117 (122)
6 1vk5_A Expressed protein; stru 14.5 63 0.0021 25.9 1.4 19 232-253 35-53 (157)
7 2jz3_A Suppressor of cytokine 11.6 1.1E+02 0.0039 18.9 1.7 15 265-279 24-38 (40)
8 2jp3_A FXYD domain-containing 8.3 3.7E+02 0.013 18.7 3.5 10 142-151 26-35 (67)
9 3rco_A Tudor domain-containing 7.9 1.4E+02 0.0049 21.9 1.3 28 245-272 35-62 (89)
10 2l9u_A Receptor tyrosine-prote 7.2 3.8E+02 0.013 16.2 2.8 23 65-87 12-34 (40)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.93 E-value=6.8e-25 Score=191.73 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCchhHHHHHHHHHHHHHhcCccCchhHHH
Q 022912 135 QAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (290)
Q Consensus 135 ~~~~~~g~~l~~~G~~le~~Ad~Ql~~-F~~--~~~~~gkli~~Glw~~sRHPNY~ge~l~w~G~~l~~~~~~~~~~~~~ 211 (290)
.+...+|++++++|+.++..||.|+.+ |+. +++++++++++|+|++||||||+|+++.|+|+++...+ +++
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HHH
Confidence 567899999999999999999999865 453 34577889999999999999999999999999987522 333
Q ss_pred HH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022912 212 IL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 212 ~~-~pl~~~~ll~~~sgi~~~E~~~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
++ ++++++++ +..+++.||+.+.++|| ++|++|+++|+++||++
T Consensus 149 ~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 149 LIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 33 33332222 34568999999999999 99999999999999975
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=67.35 E-value=2.9 Score=34.09 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.0
Q ss_pred HHHHcCCchHHHHHHhhCCcccccC
Q 022912 235 ADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
+.++| |.|++||++|.+-||-+
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHHC---CCHHHHHhhcCCcCcEE
Confidence 44667 89999999999988843
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=60.67 E-value=4.7 Score=32.78 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCCcccccC
Q 022912 235 ADKKFGNMPAYRLYKKTTSPLIPLP 259 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~~fiP~~ 259 (290)
+.++| |.|++|+++|.+-||-+
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCcCceE
Confidence 44567 89999999999888843
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=60.31 E-value=4.9 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCC--cccccC
Q 022912 235 ADKKFGNMPAYRLYKKTTS--PLIPLP 259 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~--~fiP~~ 259 (290)
+.++| |.|++|+++|. +-||-+
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccEE
Confidence 44667 89999999998 888843
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=57.66 E-value=1.6 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022912 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (290)
Q Consensus 235 ~~~kyG~~~~Y~~Y~k~t~~fiP~ 258 (290)
+.++| |.|++||++|.+-||-
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCE
T ss_pred HHHHC---cCHHHHHhhcCCcccE
Confidence 45678 8899999999988884
No 6
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=14.52 E-value=63 Score=25.89 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHcCCchHHHHHHhhCC
Q 022912 232 EESADKKFGNMPAYRLYKKTTS 253 (290)
Q Consensus 232 E~~~~~kyG~~~~Y~~Y~k~t~ 253 (290)
|..+.+|- +.|++|+|+.|
T Consensus 35 e~~liRrA---EmYQ~YMK~iP 53 (157)
T 1vk5_A 35 EGSLLRRA---EMYQDYMKQVP 53 (157)
T ss_dssp -CTTHHHH---HHHHHHHHTSC
T ss_pred chhhhhHH---HHHHHHHHhCC
Confidence 44444553 88999999965
No 7
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=11.61 E-value=1.1e+02 Score=18.87 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.8
Q ss_pred CCcHHHHHHhhhccc
Q 022912 265 NLPWWLKTILFELPL 279 (290)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (290)
.+|..+|+++.|+|.
T Consensus 24 pLP~~Lk~yL~ey~y 38 (40)
T 2jz3_A 24 QLPGPIREFLDQYDA 38 (40)
T ss_pred CCCHHHHHHHHHCCC
Confidence 688999999988874
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.29 E-value=3.7e+02 Score=18.69 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 022912 142 WIMWSVGVSI 151 (290)
Q Consensus 142 ~~l~~~G~~l 151 (290)
.+++++|+++
T Consensus 26 ~vLfi~GI~i 35 (67)
T 2jp3_A 26 GLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455666654
No 9
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=7.87 E-value=1.4e+02 Score=21.93 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.6
Q ss_pred HHHHHhhCCcccccCCCCCCCCcHHHHH
Q 022912 245 YRLYKKTTSPLIPLPPVVYGNLPWWLKT 272 (290)
Q Consensus 245 Y~~Y~k~t~~fiP~~~~~~~~~~~~~~~ 272 (290)
-+||+..++.-||+-+--|.++-+++++
T Consensus 35 ~~DYr~l~G~~iP~r~lGy~sl~~fL~s 62 (89)
T 3rco_A 35 QGEYRSLTGDWIPFKQLGFPTLEAYLRS 62 (89)
T ss_dssp HHHHHHHHSSCCCTTTTTCSSHHHHHHT
T ss_pred HHHHHHHhCCcCChhhhCcccHHHHHhc
Confidence 4699999999999988888888777774
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=7.22 E-value=3.8e+02 Score=16.24 Aligned_cols=23 Identities=26% Similarity=0.233 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcC
Q 022912 65 VLTFLAVVWGLRLALFLLMRILN 87 (290)
Q Consensus 65 l~~~lv~~W~~RL~~~l~~R~~~ 87 (290)
++.+++++.-.==+.|++||..+
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34445555444445788888643
Done!