Query 022912
Match_columns 290
No_of_seqs 228 out of 1545
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 13:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 29.3 13 0.00095 23.4 1.9 12 183-194 2-13 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 26.8 7.5 0.00055 22.2 0.3 13 181-193 1-13 (34)
3 d1vk5a_ a.220.1.1 (A:) Hypothe 10.6 72 0.0052 22.7 2.4 11 243-253 8-18 (121)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 9.0 1.6E+02 0.011 15.8 3.6 21 10-30 5-25 (32)
5 d3ctda1 a.80.1.2 (A:258-420) U 6.9 91 0.0066 23.6 1.8 17 79-95 22-38 (163)
6 d2c9wa1 a.271.1.1 (A:149-198) 6.3 1.2E+02 0.0088 18.3 1.8 15 265-279 34-48 (50)
7 d1ytqa2 b.11.1.1 (A:104-194) b 6.0 31 0.0023 23.5 -1.4 20 172-191 41-60 (91)
8 d1tzyc_ a.22.1.1 (C:) Histone 5.7 51 0.0037 22.9 -0.4 17 244-260 10-26 (95)
9 d2csba4 a.60.2.4 (A:465-519) T 5.6 1.8E+02 0.013 17.1 2.3 20 225-247 9-29 (55)
10 d1okia2 b.11.1.1 (A:145-236) b 5.6 32 0.0023 23.5 -1.6 19 172-190 42-60 (92)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=29.28 E-value=13 Score=23.36 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.7
Q ss_pred CchhHHHHHHHH
Q 022912 183 HPNYFGEIFLWW 194 (290)
Q Consensus 183 HPNY~ge~l~w~ 194 (290)
||||.++..=|+
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999998775
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.82 E-value=7.5 Score=22.21 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=9.1
Q ss_pred ccCchhHHHHHHH
Q 022912 181 SRHPNYFGEIFLW 193 (290)
Q Consensus 181 sRHPNY~ge~l~w 193 (290)
+|||.|--+++--
T Consensus 1 ~rhpkyKT~lC~~ 13 (34)
T d1rgoa2 1 TRHPKYKTELCRT 13 (34)
T ss_dssp CCCTTTTCSBCHH
T ss_pred CCCCCccchhccc
Confidence 6899987665543
No 3
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.57 E-value=72 Score=22.73 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.6
Q ss_pred hHHHHHHhhCC
Q 022912 243 PAYRLYKKTTS 253 (290)
Q Consensus 243 ~~Y~~Y~k~t~ 253 (290)
+.|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 78999999965
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.96 E-value=1.6e+02 Score=15.76 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022912 10 LALTAIVTVGYQLLFFVITAL 30 (290)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~ 30 (290)
.+.++++.|+..+++|.++..
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 456777888888888887654
No 5
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=6.88 E-value=91 Score=23.60 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=12.3
Q ss_pred HHHHHhhcCcCcchhhH
Q 022912 79 LFLLMRILNWGEDRRFD 95 (290)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~ 95 (290)
.|++.|.+..|||.+|-
T Consensus 22 ly~larml~~Gedp~~i 38 (163)
T d3ctda1 22 LYWLANMVEAGEDPNFI 38 (163)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCCchHHH
Confidence 35566777789999874
No 6
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.32 E-value=1.2e+02 Score=18.33 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=12.5
Q ss_pred CCcHHHHHHhhhccc
Q 022912 265 NLPWWLKTILFELPL 279 (290)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (290)
.+|..+|+++-|+|.
T Consensus 34 PLP~~Lk~YL~eY~y 48 (50)
T d2c9wa1 34 PLPTRLKDYLEEYKF 48 (50)
T ss_dssp SSCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHcCC
Confidence 588999999988874
No 7
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.96 E-value=31 Score=23.50 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.0
Q ss_pred ccccCccccccCchhHHHHH
Q 022912 172 WCNVGFWKYSRHPNYFGEIF 191 (290)
Q Consensus 172 li~~Glw~~sRHPNY~ge~l 191 (290)
-+.+|.|-.--||||.|.+.
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~~ 60 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQY 60 (91)
T ss_dssp EECSSCEEEEEETTTEEEEE
T ss_pred EecCCCEEEEecCCcEEEEE
Confidence 37789999999999998753
No 8
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=5.75 E-value=51 Score=22.86 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.5
Q ss_pred HHHHHHhhCCcccccCC
Q 022912 244 AYRLYKKTTSPLIPLPP 260 (290)
Q Consensus 244 ~Y~~Y~k~t~~fiP~~~ 260 (290)
|=+.||+.|..+||..|
T Consensus 10 EIRk~Qkst~lLIpk~p 26 (95)
T d1tzyc_ 10 EIRRYQKSTELLIRKLP 26 (95)
T ss_dssp HHHHHHHCCSCCSCHHH
T ss_pred HHHHHhCCccccccccc
Confidence 45688999999998755
No 9
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=5.63 E-value=1.8e+02 Score=17.10 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=12.4
Q ss_pred HhCchHH-HHHHHHHcCCchHHHH
Q 022912 225 ISGIPLL-EESADKKFGNMPAYRL 247 (290)
Q Consensus 225 ~sgi~~~-E~~~~~kyG~~~~Y~~ 247 (290)
+-|+..+ .+++++||| .|..
T Consensus 9 irgidreraerllkkyg---gysk 29 (55)
T d2csba4 9 IRGIDRERAERLLKKYG---GYSK 29 (55)
T ss_dssp STTCCHHHHHHHHHHHT---SHHH
T ss_pred eecccHHHHHHHHHHhc---ChhH
Confidence 3456555 356889997 4544
No 10
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.59 E-value=32 Score=23.52 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.7
Q ss_pred ccccCccccccCchhHHHH
Q 022912 172 WCNVGFWKYSRHPNYFGEI 190 (290)
Q Consensus 172 li~~Glw~~sRHPNY~ge~ 190 (290)
-+..|.|-..-||||-|..
T Consensus 42 ~V~~G~Wv~ye~~nf~G~~ 60 (92)
T d1okia2 42 KVSSGTWVGYQYPGYRGYQ 60 (92)
T ss_dssp EEEESEEEEEEETTTEEEE
T ss_pred EEeCCCEEEEECCCCEEEE
Confidence 4788999999999998865
Done!