BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022913
MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEE
ISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAE
TILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILH
RCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSV
EQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW

High Scoring Gene Products

Symbol, full name Information P value
AT5G60750 protein from Arabidopsis thaliana 2.3e-101
AT1G14270 protein from Arabidopsis thaliana 1.3e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022913
        (290 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175836 - symbol:AT5G60750 "AT5G60750" species...  1005  2.3e-101  1
TAIR|locus:2012487 - symbol:AT1G14270 species:3702 "Arabi...   127  1.3e-05   1


>TAIR|locus:2175836 [details] [associations]
            symbol:AT5G60750 "AT5G60750" species:3702 "Arabidopsis
            thaliana" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
            [GO:0006569 "tryptophan catabolic process" evidence=RCA]
            [GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA]
            InterPro:IPR003675 Pfam:PF02517 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0006508 GO:GO:0008233
            eggNOG:COG1266 KO:K07052 EMBL:AY065231 EMBL:AY096531 EMBL:AY086571
            IPI:IPI00516676 RefSeq:NP_568928.1 UniGene:At.7243 MEROPS:M79.A01
            EnsemblPlants:AT5G60750.1 GeneID:836196 KEGG:ath:AT5G60750
            TAIR:At5g60750 HOGENOM:HOG000241876 InParanoid:Q8VZ58 OMA:EQSIMAR
            PhylomeDB:Q8VZ58 ProtClustDB:CLSN2690057 ArrayExpress:Q8VZ58
            Genevestigator:Q8VZ58 Uniprot:Q8VZ58
        Length = 347

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 196/293 (66%), Positives = 222/293 (75%)

Query:     1 MLSSCSHS--LSHRPIVLPXXXXXXX--XXXXXXXXXXXXXXXXXXTLKLTRNKWKISCF 56
             + SSCS S  L HRP +                               K  ++KWKI CF
Sbjct:     2 LTSSCSSSSLLCHRPALSSSRSKFRVPCRTVFSPALTKISPLTASSPSKSAKHKWKILCF 61

Query:    57 RHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVP 116
             R+E+ +PEN  PE   HFV +ELVKP+ D     K DW  T ++AAD VL+AIG+RW VP
Sbjct:    62 RNEDSAPEN--PE---HFVPEELVKPDQDSPCTDKTDWKATFQKAADAVLKAIGTRWKVP 116

Query:   117 WTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGI 176
             WT ETI+QVMLLWVAAFWFIGSW+IPF AH++GF KESLTFRGQALFSL+TDVTEGLAGI
Sbjct:   117 WTVETIVQVMLLWVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFSLITDVTEGLAGI 176

Query:   177 AILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMP-SAPV 235
             AILHRCLS F PL SDWFRF+LKGNWQLDV +GC MFP VNRLSQ NLNLLPL P S+PV
Sbjct:   177 AILHRCLSMFRPLASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLPLPPTSSPV 236

Query:   236 TISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
             ++SSVEQSIMARDPVAMALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct:   237 SLSSVEQSIMARDPVAMALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWCA 289


>TAIR|locus:2012487 [details] [associations]
            symbol:AT1G14270 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR003675
            Pfam:PF02517 EMBL:CP002684 GO:GO:0016020 GO:GO:0006508
            GO:GO:0008233 KO:K07052 IPI:IPI00541596 RefSeq:NP_563943.2
            UniGene:At.41979 UniGene:At.41980 PRIDE:F4HUI0
            EnsemblPlants:AT1G14270.1 GeneID:837988 KEGG:ath:AT1G14270
            OMA:MVSLTKW Uniprot:F4HUI0
        Length = 353

 Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 49/184 (26%), Positives = 78/184 (42%)

Query:   112 RWTVPWTAETILQVMLLWVAAFWFIGSW---VIPFAAHVAGFSKESLTFRGQA-LFSLVT 167
             RW VPW  +T+         +F   G     VIPF     G   E LT   +A +  L  
Sbjct:    98 RWEVPWGWQTVSLTSFACALSFVLTGLTEMAVIPFL----GIDVEKLTLDDKAEILFLDQ 153

Query:   168 DVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLD----VALGCLMFPLVNRLSQFN 223
              +T  +  +A++      F PLP D  R+ L+    L     V  G  +   V  ++   
Sbjct:   154 GLTTAVV-LAVIFTVAKTFDPLPEDILRYDLRQPVNLQKGWLVWGGIGLVGAVGAIALTG 212

Query:   224 LNLLPLMPSAPVT-ISSVEQ--SIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLT 280
             + L      AP   + S+ +   ++    ++      +  + AP+ EE VFRGF + SLT
Sbjct:   213 VVLSVFRTEAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGFFMVSLT 272

Query:   281 KYMP 284
             K++P
Sbjct:   273 KWVP 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      290       265   0.00093  114 3  11 22  0.40    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  227 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.36u 0.09s 21.45t   Elapsed:  00:00:01
  Total cpu time:  21.36u 0.09s 21.45t   Elapsed:  00:00:01
  Start:  Sat May 11 02:05:28 2013   End:  Sat May 11 02:05:29 2013

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