BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022913
         (290 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03188|CENPC_HUMAN Centromere protein C 1 OS=Homo sapiens GN=CENPC1 PE=1 SV=2
          Length = 943

 Score = 33.5 bits (75), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 27  RPSSSSLSRTSRIFDSTLKLTRNKWKISC---FRHEEISPENSKPESIEHFVQDELVKPE 83
           R S   + R ++   STL L   K K       RH   +P +S P      ++DE +  E
Sbjct: 248 RDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDE 307

Query: 84  IDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQ 124
            DQS    R W T  R+A      ++  R   P  +  +LQ
Sbjct: 308 SDQSFA-SRSWITIPRKAG-----SLKQRTISPAESTALLQ 342


>sp|Q01H84|SELN_XENTR Selenoprotein N OS=Xenopus tropicalis GN=sepn1 PE=2 SV=2
          Length = 562

 Score = 32.3 bits (72), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 178 ILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRL-SQFNLNLLPLMP 231
           I+H+ LS FHP P    RF+ +G+     A+    + +V R+ ++F LN  P  P
Sbjct: 225 IIHKLLSMFHPRPFIKTRFAPQGSVACIRAISDFYYDIVFRIHAEFQLNEPPNFP 279


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,363,088
Number of Sequences: 539616
Number of extensions: 3950903
Number of successful extensions: 12070
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12067
Number of HSP's gapped (non-prelim): 5
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)