Query 022913
Match_columns 290
No_of_seqs 181 out of 247
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03008 pepcterm_CAAX CAAX p 98.3 3.5E-06 7.5E-11 77.3 9.5 105 167-281 38-145 (222)
2 COG1266 Predicted metal-depend 98.1 3.5E-05 7.5E-10 66.9 11.2 40 250-289 120-159 (226)
3 PF02517 Abi: CAAX protease se 97.7 2.9E-05 6.4E-10 59.6 2.5 37 252-288 3-39 (91)
4 KOG4130 Prenyl protein proteas 79.6 0.79 1.7E-05 43.4 0.9 27 256-282 131-157 (291)
5 PF13994 PgaD: PgaD-like prote 34.4 2.4E+02 0.0053 23.7 7.7 72 111-186 5-87 (138)
6 TIGR02587 putative integral me 33.3 4.5E+02 0.0098 25.3 11.5 71 144-226 53-124 (271)
7 PF13367 PrsW-protease: Protea 31.6 1.7E+02 0.0037 25.4 6.6 18 253-270 40-57 (191)
8 PF11833 DUF3353: Protein of u 28.5 4.5E+02 0.0097 23.8 11.4 32 85-127 69-100 (194)
9 COG4858 Uncharacterized membra 28.1 4.9E+02 0.011 24.2 13.0 8 92-99 70-77 (226)
10 COG4858 Uncharacterized membra 27.7 1.7E+02 0.0038 27.0 5.9 31 108-138 151-184 (226)
11 COG4377 Predicted membrane pro 26.8 4.1E+02 0.0088 25.0 8.2 34 252-286 76-109 (258)
12 PF13664 DUF4149: Domain of un 25.9 3.1E+02 0.0067 21.1 8.6 54 127-182 4-57 (101)
13 PF10086 DUF2324: Putative mem 25.5 4.2E+02 0.009 24.4 8.2 18 252-269 60-77 (223)
14 PF07857 DUF1632: CEO family ( 23.2 4.3E+02 0.0094 24.9 8.0 20 170-189 231-250 (254)
15 COG0713 NuoK NADH:ubiquinone o 22.7 1.5E+02 0.0033 24.5 4.2 41 150-190 49-91 (100)
16 KOG2178 Predicted sugar kinase 22.6 45 0.00098 33.7 1.4 20 5-24 322-341 (409)
17 PF10136 SpecificRecomb: Site- 22.2 9.3E+02 0.02 26.0 11.0 41 210-253 429-469 (643)
No 1
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=98.30 E-value=3.5e-06 Score=77.29 Aligned_cols=105 Identities=21% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceeeecccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccchhHHHHHHhh
Q 022913 167 TDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMA 246 (290)
Q Consensus 167 ~yl~~~v~~L~IL~~~lk~~~plp~gwF~F~~~~~W~~~i~l~ll~~pLV~llsll~~~L~~g~~sn~~~~sale~~L~s 246 (290)
.|-..+++...+++.+-|++..+ +|-+.+. +++..++..|.+++.+.+.+..+.....+..+.|+ ..+.+
T Consensus 38 lYp~~~~~~~~~l~~~~~~~~el--~~~~~~~-~~~l~gi~~Gv~~f~lwi~~~~~~~~~~~~~~~~~-------~~i~~ 107 (222)
T TIGR03008 38 LYPVKAAIVGAVLAVFRKRCLEL--HLRDLRP-RHLLFSAAVGVAVFVLWVNLDWLLPFQGEPAGFDP-------SQIGN 107 (222)
T ss_pred hhhHHHHHHHHHHHHHcccchhh--ccccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccch-------hhhhc
Confidence 56677777777777666655432 2322222 23445666666666655555444333322112221 11222
Q ss_pred c---ChhHHHHHHHHHHHHhhHHHHHHhhhhchhhhhh
Q 022913 247 R---DPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTK 281 (290)
Q Consensus 247 ~---~~~a~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~ 281 (290)
. .....+..++.+++++|+.||++|||++++.+.+
T Consensus 108 ~~~~~~~l~~~~l~~~~l~vpi~EElfFRG~l~~~l~~ 145 (222)
T TIGR03008 108 AGLTRWVLIAFRLAGATLVVPVMEELFWRSFLLRYLQQ 145 (222)
T ss_pred ccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1 2222333457788999999999999999999976
No 2
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=98.11 E-value=3.5e-05 Score=66.93 Aligned_cols=40 Identities=33% Similarity=0.569 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhchhhhhhcCcccccC
Q 022913 250 VAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAY 289 (290)
Q Consensus 250 ~a~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~y~p~w~Ai 289 (290)
......++..++++|+.||++|||++++.+.++++.|.|+
T Consensus 120 ~~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~ 159 (226)
T COG1266 120 LWLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAI 159 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHH
Confidence 3567788899999999999999999999999999987764
No 3
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=97.65 E-value=2.9e-05 Score=59.63 Aligned_cols=37 Identities=35% Similarity=0.738 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhchhhhhhcCccccc
Q 022913 252 MALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288 (290)
Q Consensus 252 ~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~y~p~w~A 288 (290)
.+...+..++++|+.||++|||++++.+.++.+.+.|
T Consensus 3 ~~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a 39 (91)
T PF02517_consen 3 FLIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFA 39 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3566778899999999999999999999999654433
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.57 E-value=0.79 Score=43.36 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=22.4
Q ss_pred HHHHHHHhhHHHHHHhhhhchhhhhhc
Q 022913 256 AIVVSVCAPVWEEIVFRGFLLPSLTKY 282 (290)
Q Consensus 256 ~l~~~VlAPI~EEIIFRGFLL~sLt~y 282 (290)
.+---|+||+-||++||..++|-...-
T Consensus 131 ~~RN~iiaPLtEElvfracmlp~~l~~ 157 (291)
T KOG4130|consen 131 WFRNFIIAPLTEELVFRACMLPTYLNL 157 (291)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHh
Confidence 345678999999999999999976554
No 5
>PF13994 PgaD: PgaD-like protein
Probab=34.37 E-value=2.4e+02 Score=23.73 Aligned_cols=72 Identities=21% Similarity=0.141 Sum_probs=36.1
Q ss_pred CCccccCchhHHH--HHHHHHHHHHHhcchhhHHH---HHHHhccCccc----cccchhHHHHHHHHHHH--HHHHHHHH
Q 022913 111 SRWTVPWTAETIL--QVMLLWVAAFWFIGSWVIPF---AAHVAGFSKES----LTFRGQALFSLVTDVTE--GLAGIAIL 179 (290)
Q Consensus 111 ~~w~vPW~~~~i~--~vmll~~~~F~~vG~v~iPl---~~~~lg~~~~~----l~~~~qAL~~Li~yl~~--~v~~L~IL 179 (290)
.+-..||....+. .+.+.|++-+++ ..|+ +...+|..... ..........+..|+.. ..+++.++
T Consensus 5 ~~r~~~~~~r~~~~~lT~~~W~~~~yL----~~pl~~ll~~ll~~~~~~~~~~~~~~~~~~~~l~~y~~i~~~~a~~Li~ 80 (138)
T PF13994_consen 5 EPRLLPRHQRLIDYFLTLLFWGGFIYL----WRPLLTLLAWLLGLHLFYPQMSLGGFLSSLNTLQIYLLIALVNAVILIL 80 (138)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHccccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666553 344556654444 4574 44445543322 22333344445555443 34566666
Q ss_pred HHHHhhc
Q 022913 180 HRCLSRF 186 (290)
Q Consensus 180 ~~~lk~~ 186 (290)
|..+.++
T Consensus 81 Wa~yn~~ 87 (138)
T PF13994_consen 81 WAKYNRL 87 (138)
T ss_pred HHHHHHH
Confidence 7776644
No 6
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=33.31 E-value=4.5e+02 Score=25.34 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=37.9
Q ss_pred HHHHhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeecccchhHHH-HHHHHHHHHHHHHHHH
Q 022913 144 AAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDV-ALGCLMFPLVNRLSQF 222 (290)
Q Consensus 144 ~~~~lg~~~~~l~~~~qAL~~Li~yl~~~v~~L~IL~~~lk~~~plp~gwF~F~~~~~W~~~i-~l~ll~~pLV~llsll 222 (290)
+....||.+. .+.+++....+..|.+..+....+|+..-| . +....|.-++ ..-+.++|..+....-
T Consensus 53 lv~~~GFr~~-~~~~~~i~eti~ay~Iglv~S~~~L~lfgr-i----------~~~~pl~e~Lg~vivl~vP~sIGaAla 120 (271)
T TIGR02587 53 LNYTEGFRKR-KRVREAVIDTVEAMAIGFVCSAAMLWLFGI-I----------TPETSLKEIVGKVAFQGVPFSLGAALA 120 (271)
T ss_pred HHHHhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHcc-C----------CCCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence 3445788666 333444444577777777777776665444 1 1112233212 2223456777776666
Q ss_pred HHhh
Q 022913 223 NLNL 226 (290)
Q Consensus 223 ~~~L 226 (290)
++.+
T Consensus 121 R~~L 124 (271)
T TIGR02587 121 RQQL 124 (271)
T ss_pred HHHh
Confidence 6665
No 7
>PF13367 PrsW-protease: Protease prsW family
Probab=31.62 E-value=1.7e+02 Score=25.40 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 022913 253 ALYAIVVSVCAPVWEEIV 270 (290)
Q Consensus 253 ~ll~l~~~VlAPI~EEII 270 (290)
........+.||+.||.+
T Consensus 40 ~~~~~~~~~~a~~~EE~~ 57 (191)
T PF13367_consen 40 FSSLWGAFLIAPLVEEFA 57 (191)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 345567888999999975
No 8
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=28.51 E-value=4.5e+02 Score=23.79 Aligned_cols=32 Identities=9% Similarity=0.291 Sum_probs=20.2
Q ss_pred CCCCccchhHHHHHHHHhccccccCCCCccccCchhHHHHHHH
Q 022913 85 DQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVML 127 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~vPW~~~~i~~vml 127 (290)
+.+......|..++. .+++.|=.....+...+
T Consensus 69 ~~~~~~~p~wl~~~~-----------~~~~~P~~~~l~~~~~~ 100 (194)
T PF11833_consen 69 PKPSNPSPPWLQRLL-----------PSFDTPSSQDLLIRAAA 100 (194)
T ss_pred CCCCCccchHHHhcc-----------cceeCCCcchHHHHHHH
Confidence 345555678888872 46677777766666533
No 9
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=28.06 E-value=4.9e+02 Score=24.15 Aligned_cols=8 Identities=13% Similarity=0.833 Sum_probs=6.2
Q ss_pred hhHHHHHH
Q 022913 92 RDWATTLR 99 (290)
Q Consensus 92 ~~~~~~~~ 99 (290)
++|..+++
T Consensus 70 Te~v~sf~ 77 (226)
T COG4858 70 TEWVVSFD 77 (226)
T ss_pred hHHHhhcC
Confidence 58888877
No 10
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.68 E-value=1.7e+02 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=21.4
Q ss_pred cCCCCccccCchhHH---HHHHHHHHHHHHhcch
Q 022913 108 AIGSRWTVPWTAETI---LQVMLLWVAAFWFIGS 138 (290)
Q Consensus 108 ~~~~~w~vPW~~~~i---~~vmll~~~~F~~vG~ 138 (290)
..+-+-+=||.++.+ ...|++|.+.|++.+.
T Consensus 151 ~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~ 184 (226)
T COG4858 151 MRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVF 184 (226)
T ss_pred hhcccccCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455678998886 4467788888877555
No 11
>COG4377 Predicted membrane protein [Function unknown]
Probab=26.80 E-value=4.1e+02 Score=25.02 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhchhhhhhcCccc
Q 022913 252 MALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVW 286 (290)
Q Consensus 252 ~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~y~p~w 286 (290)
+++|.+..+.+|-+|||.= |=..+++|+|+-..|
T Consensus 76 Pl~y~IYG~lMAg~FEE~g-R~l~~rfl~kR~~~~ 109 (258)
T COG4377 76 PLIYIIYGLLMAGFFEETG-RLLFFRFLEKRSLEK 109 (258)
T ss_pred CcHHHHHHHHHHHHHHHHh-HHHHHHHHHhCcccc
Confidence 4789999999999999973 556677777765544
No 12
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=25.90 E-value=3.1e+02 Score=21.12 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHhcchhhHHHHHHHhccCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022913 127 LLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRC 182 (290)
Q Consensus 127 ll~~~~F~~vG~v~iPl~~~~lg~~~~~l~~~~qAL~~Li~yl~~~v~~L~IL~~~ 182 (290)
.+|.++-++.+.++.|.+...+ +++........++-...++......+.++...
T Consensus 4 ~~w~G~~~~~~fvvap~lF~~L--~~~~ag~i~~~lFp~y~~~~~~~~~v~l~~~~ 57 (101)
T PF13664_consen 4 ALWLGSMVFFTFVVAPVLFKAL--PRQQAGKIQGKLFPKYFYLGLACAAVLLLTSL 57 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777789988875 34433333333333333333333333333333
No 13
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=25.54 E-value=4.2e+02 Score=24.35 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHH
Q 022913 252 MALYAIVVSVCAPVWEEI 269 (290)
Q Consensus 252 ~~ll~l~~~VlAPI~EEI 269 (290)
+.++.+..++.|=++||+
T Consensus 60 ~~l~~ly~~l~AGiFEE~ 77 (223)
T PF10086_consen 60 PILYALYGGLMAGIFEET 77 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888899999999994
No 14
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.18 E-value=4.3e+02 Score=24.93 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 022913 170 TEGLAGIAILHRCLSRFHPL 189 (290)
Q Consensus 170 ~~~v~~L~IL~~~lk~~~pl 189 (290)
..+-....++|-.++|-+|.
T Consensus 231 fltSt~~F~~Y~~~~rn~P~ 250 (254)
T PF07857_consen 231 FLTSTVYFVIYCIIKRNKPK 250 (254)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 33344456667777766553
No 15
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=22.75 E-value=1.5e+02 Score=24.45 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=30.0
Q ss_pred cCccccccchh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022913 150 FSKESLTFRGQ--ALFSLVTDVTEGLAGIAILHRCLSRFHPLP 190 (290)
Q Consensus 150 ~~~~~l~~~~q--AL~~Li~yl~~~v~~L~IL~~~lk~~~plp 190 (290)
++.+.-+..+| |++....-..|.+++++++-..+|+++.+.
T Consensus 49 ~~~y~~~~~gQvfaifvitvAAaE~aVGLailv~~yR~~~ti~ 91 (100)
T COG0713 49 FSSYLGDLDGQVFAIFVITVAAAEAAVGLAILVALYRRRGTIN 91 (100)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 33444456677 555566677899999999999999987554
No 16
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.57 E-value=45 Score=33.66 Aligned_cols=20 Identities=70% Similarity=1.188 Sum_probs=18.4
Q ss_pred CCCCCcCCCCcCCCCcccee
Q 022913 5 CSHSLSHRPIVLPSISKLRV 24 (290)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (290)
|-|||||||++.|...++||
T Consensus 322 CPhSLSFRPIIlPds~~L~I 341 (409)
T KOG2178|consen 322 CPHSLSFRPIILPDSSELRV 341 (409)
T ss_pred CCCcccccceEccCccEEEE
Confidence 67899999999999888888
No 17
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=22.24 E-value=9.3e+02 Score=25.97 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCccchhHHHHHHhhcChhHHH
Q 022913 210 CLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMA 253 (290)
Q Consensus 210 ll~~pLV~llsll~~~L~~g~~sn~~~~sale~~L~s~~~~a~~ 253 (290)
.+++|++.++++....+++..--++ +..+..+.+.++++..
T Consensus 429 ~va~pvA~li~~~~~~~~g~pll~~---~kA~~~L~sl~p~s~a 469 (643)
T PF10136_consen 429 LVAFPVALLIAWGYAQLFGQPLLSP---EKAAYLLHSLDPFSPA 469 (643)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHhcCccccH
Confidence 5668899999988888875322222 3346667777776533
Done!