Query 022913
Match_columns 290
No_of_seqs 181 out of 247
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw6_A CAAX prenyl protease 1 11.6 1E+03 0.034 23.1 12.3 27 119-146 117-144 (482)
2 2lat_A Dolichyl-diphosphooligo 11.0 3.5E+02 0.012 17.5 3.9 26 160-185 5-30 (37)
3 3tow_A Multivesicular BODY sub 10.5 88 0.003 26.2 1.2 28 46-73 40-67 (152)
4 2rrf_A Zinc finger FYVE domain 10.2 1.5E+02 0.0051 24.7 2.4 18 92-109 116-133 (141)
5 2zy9_A Mg2+ transporter MGTE; 8.8 7.6E+02 0.026 23.3 7.3 16 140-155 430-445 (473)
6 3u85_B Histone-lysine N-methyl 8.4 1.2E+02 0.0041 17.3 0.8 12 20-31 1-12 (21)
7 4b1v_M Phosphatase and actin r 7.5 1.4E+02 0.0048 18.7 0.9 10 267-276 19-28 (32)
8 2y69_L Cytochrome C oxidase su 7.0 4.5E+02 0.015 18.7 3.6 38 108-147 20-57 (63)
9 1rkl_A Dolichyl-diphosphooligo 6.9 4.1E+02 0.014 17.1 2.9 25 161-185 6-30 (36)
10 1v54_L VIIIA, cytochrome C oxi 5.8 5.7E+02 0.019 17.1 3.4 36 110-147 6-41 (47)
No 1
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=11.58 E-value=1e+03 Score=23.09 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHhcch-hhHHHHHH
Q 022913 119 AETILQVMLLWVAAFWFIGS-WVIPFAAH 146 (290)
Q Consensus 119 ~~~i~~vmll~~~~F~~vG~-v~iPl~~~ 146 (290)
...+++.++ .++.+.+++. +-+|+.++
T Consensus 117 ~~~i~~s~~-f~~~~~l~~~l~~LP~~~Y 144 (482)
T 4aw6_A 117 EYEITQSLV-FLLLATLFSALAGLPWSLY 144 (482)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHH-HHHHHHHHHHHHHhHHHHH
Confidence 345666554 2233343344 34588776
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=10.96 E-value=3.5e+02 Score=17.51 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022913 160 QALFSLVTDVTEGLAGIAILHRCLSR 185 (290)
Q Consensus 160 qAL~~Li~yl~~~v~~L~IL~~~lk~ 185 (290)
+.|+.+...+..+++.+.++|.++..
T Consensus 5 ~qL~~lan~lG~~~~~LIVlYH~v~~ 30 (37)
T 2lat_A 5 VQLAIFANMLGVSLFLLVVLYHYVAV 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888888887753
No 3
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=10.52 E-value=88 Score=26.24 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=20.6
Q ss_pred ccccceEEEeeecCCCCCCCCCCCCccc
Q 022913 46 LTRNKWKISCFRHEEISPENSKPESIEH 73 (290)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (290)
+.++..+.+||+.|..+.++.+.+.+.|
T Consensus 40 F~~k~~rYLC~sr~~~~~~~~~~~VvtD 67 (152)
T 3tow_A 40 FKSKVTRYLCFTRSFSKENSHLGNVLVD 67 (152)
T ss_dssp TSCCCCCEEEEECCCCSTTGGGCEEEEE
T ss_pred cccCCeEEEEEecCCcccccCCCCeEEE
Confidence 4456788999999977777766666655
No 4
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=10.18 E-value=1.5e+02 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.7
Q ss_pred hhHHHHHHHHhccccccC
Q 022913 92 RDWATTLREAADGVLRAI 109 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~ 109 (290)
-.|+..||||++++.-.-
T Consensus 116 ~aWlaAm~KA~KllyEsr 133 (141)
T 2rrf_A 116 VAWLVAMHKAAKLLYESR 133 (141)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 579999999999966543
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=8.75 E-value=7.6e+02 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=11.6
Q ss_pred hHHHHHHHhccCcccc
Q 022913 140 VIPFAAHVAGFSKESL 155 (290)
Q Consensus 140 ~iPl~~~~lg~~~~~l 155 (290)
++|+++..+|+||...
T Consensus 430 ~~p~~~~~~~~DPa~~ 445 (473)
T 2zy9_A 430 MLPFLLRRLGVDPALV 445 (473)
T ss_dssp THHHHHHHHTCCGGGS
T ss_pred HHHHHHHHcCCCcccc
Confidence 4577777788887664
No 6
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=8.39 E-value=1.2e+02 Score=17.32 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=8.7
Q ss_pred ccceeccCCCCC
Q 022913 20 SKLRVSSRPSSS 31 (290)
Q Consensus 20 ~~~~~~~~~~~~ 31 (290)
|+-|.|.||+.+
T Consensus 1 srwrfparpg~s 12 (21)
T 3u85_B 1 SRWRFPARPGTT 12 (26)
T ss_pred CccccccCCCcc
Confidence 456888899853
No 7
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=7.50 E-value=1.4e+02 Score=18.70 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=7.9
Q ss_pred HHHHhhhhch
Q 022913 267 EEIVFRGFLL 276 (290)
Q Consensus 267 EEIIFRGFLL 276 (290)
||+|=||.|-
T Consensus 19 eelikrgvlk 28 (32)
T 4b1v_M 19 EELIKRGVLK 28 (32)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHhhhhh
Confidence 8888888763
No 8
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.98 E-value=4.5e+02 Score=18.68 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=24.2
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 022913 108 AIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHV 147 (290)
Q Consensus 108 ~~~~~w~vPW~~~~i~~vmll~~~~F~~vG~v~iPl~~~~ 147 (290)
+.++.-+.|++.+.=+...+. ..+|+.+|.. +|+++..
T Consensus 20 ~eGp~sNLPF~~~nk~~~~~~-~~~f~g~GF~-~PF~i~~ 57 (63)
T 2y69_L 20 EEGPGKNIPFSVENKWRLLAM-MTLFFGSGFA-APFFIVR 57 (63)
T ss_dssp CCSTTTSSSSCCSSHHHHHHH-HHHHHHHHHH-HHHHHHH
T ss_pred CCCCCCcCCcCCcchhHHHHH-HHHHHHHHHh-hhHHHHH
Confidence 455777888887665543332 2368888874 7887653
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.88 E-value=4.1e+02 Score=17.09 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 022913 161 ALFSLVTDVTEGLAGIAILHRCLSR 185 (290)
Q Consensus 161 AL~~Li~yl~~~v~~L~IL~~~lk~ 185 (290)
-|+.+...+..+++.+.++|.++..
T Consensus 6 qL~~lan~lG~~~~~LIvlYH~v~~ 30 (36)
T 1rkl_A 6 QLNSLAITFGIVMMTLIVIYHAVDS 30 (36)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777788888888888887753
No 10
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=5.80 E-value=5.7e+02 Score=17.08 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCccccCchhHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 022913 110 GSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHV 147 (290)
Q Consensus 110 ~~~w~vPW~~~~i~~vmll~~~~F~~vG~v~iPl~~~~ 147 (290)
+..-+.|.+.+.=+...+ ...+|+.+|.. +|+++..
T Consensus 6 gp~sNLPF~~~nk~~~~~-~~~~f~g~GF~-~PF~i~~ 41 (47)
T 1v54_L 6 GPGKNIPFSVENKWRLLA-MMTLFFGSGFA-APFFIVR 41 (47)
T ss_dssp STTTSSSSCCSSHHHHHH-HHHHHHHHHHH-HHHHHHH
T ss_pred CCCCcCCcCCCcccHHHH-HHHHHHHHHHH-hHHHHHH
Confidence 456677777655443322 33457777774 7887653
Done!