Query 022913
Match_columns 290
No_of_seqs 181 out of 247
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022913.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022913hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dj7a2 g.39.1.3 (A:8-43) Acti 9.4 16 0.0012 22.2 -1.3 9 48-56 28-36 (36)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 9.0 1.5E+02 0.011 16.7 2.9 21 253-273 5-25 (30)
3 d1mtyb_ a.25.1.2 (B:) Methane 5.7 2.6E+02 0.019 24.4 4.4 39 238-278 224-263 (384)
4 d1upqa_ b.55.1.1 (A:) Phosphoi 5.7 81 0.0059 20.6 0.8 15 89-103 93-107 (107)
5 d1zc3b1 b.55.1.1 (B:171-279) E 5.5 80 0.0058 21.5 0.6 19 86-104 86-104 (109)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 5.5 6E+02 0.044 19.4 9.8 25 159-183 5-29 (225)
7 d1v89a_ b.55.1.1 (A:) Rho-GTPa 5.1 1.6E+02 0.012 19.4 2.2 17 88-104 97-113 (118)
8 d1mhyb_ a.25.1.2 (B:) Methane 4.9 2.9E+02 0.021 24.0 4.2 38 238-277 222-260 (383)
9 d1v61a_ b.55.1.1 (A:) Rac/CDC4 4.4 1.4E+02 0.011 21.1 1.5 19 86-104 109-127 (132)
10 d2incb1 a.25.1.2 (B:8-329) Tol 4.4 2.7E+02 0.02 23.4 3.6 34 239-274 198-231 (322)
No 1
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.44 E-value=16 Score=22.18 Aligned_cols=9 Identities=44% Similarity=1.501 Sum_probs=7.4
Q ss_pred ccceEEEee
Q 022913 48 RNKWKISCF 56 (290)
Q Consensus 48 ~~~~~~~~~ 56 (290)
.+.|++.||
T Consensus 28 dkqWH~~CF 36 (36)
T d2dj7a2 28 DKQWHVSCF 36 (36)
T ss_dssp TEEECTTTC
T ss_pred ecceeeeeC
Confidence 467999998
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.04 E-value=1.5e+02 Score=16.67 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhHHHHHHhhh
Q 022913 253 ALYAIVVSVCAPVWEEIVFRG 273 (290)
Q Consensus 253 ~ll~l~~~VlAPI~EEIIFRG 273 (290)
.-.++.+|++|=.+=-|.||-
T Consensus 5 ~yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred ehHHHHHHHHHHHHHHHHhcC
Confidence 345567888888888888873
No 3
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=5.70 E-value=2.6e+02 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=26.7
Q ss_pred hHHHHHHhh-cChhHHHHHHHHHHHHhhHHHHHHhhhhchhh
Q 022913 238 SSVEQSIMA-RDPVAMALYAIVVSVCAPVWEEIVFRGFLLPS 278 (290)
Q Consensus 238 sale~~L~s-~~~~a~~ll~l~~~VlAPI~EEIIFRGFLL~s 278 (290)
+.+|..+.. .|+. =+++..-.++=|++.|+++|+|+...
T Consensus 224 ~~vE~~l~~~~Dw~--E~~vA~Nlv~dpll~~L~~~~f~~~~ 263 (384)
T d1mtyb_ 224 LAVEGLWQEVFDWN--ESAFSVHAVYDALFGQFVRREFFQRL 263 (384)
T ss_dssp HHHHHHHHTCCCHH--HHHHHHHHTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhcccHH--HHHHHHHhhHHhhhHHHHHHHHHHHH
Confidence 344555543 5642 25666777889999999999997544
No 4
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.70 E-value=81 Score=20.61 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.0
Q ss_pred ccchhHHHHHHHHhc
Q 022913 89 PIKRDWATTLREAAD 103 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~ 103 (290)
....+|+..++.|+|
T Consensus 93 ~e~~~Wi~al~~A~~ 107 (107)
T d1upqa_ 93 EDLRGWLRALGRASR 107 (107)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 445799999999875
No 5
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.48 E-value=80 Score=21.54 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.1
Q ss_pred CCCccchhHHHHHHHHhcc
Q 022913 86 QSNPIKRDWATTLREAADG 104 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (290)
++...|++|+.++++|.+-
T Consensus 86 ~s~~eK~~W~~~l~~a~~~ 104 (109)
T d1zc3b1 86 ENAKIKREWLEVLEETKRA 104 (109)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3556789999999998764
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=5.48 E-value=6e+02 Score=19.38 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 022913 159 GQALFSLVTDVTEGLAGIAILHRCL 183 (290)
Q Consensus 159 ~qAL~~Li~yl~~~v~~L~IL~~~l 183 (290)
++.+....-|++.++...+..++.-
T Consensus 5 ~~~lf~i~pyial~vf~~G~~~R~~ 29 (225)
T d1y5ic1 5 NMFFFDIYPYIAGAVFLIGSWLRYD 29 (225)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3445555567777777777665443
No 7
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.13 E-value=1.6e+02 Score=19.43 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.1
Q ss_pred CccchhHHHHHHHHhcc
Q 022913 88 NPIKRDWATTLREAADG 104 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~ 104 (290)
.....+|+..+|.|+.-
T Consensus 97 ~ee~~~Wi~aI~~a~~~ 113 (118)
T d1v89a_ 97 QAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 34467999999998654
No 8
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=4.86 E-value=2.9e+02 Score=23.99 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=27.2
Q ss_pred hHHHHHHhh-cChhHHHHHHHHHHHHhhHHHHHHhhhhchh
Q 022913 238 SSVEQSIMA-RDPVAMALYAIVVSVCAPVWEEIVFRGFLLP 277 (290)
Q Consensus 238 sale~~L~s-~~~~a~~ll~l~~~VlAPI~EEIIFRGFLL~ 277 (290)
+.+|..+.+ .|+.- +++....++=|++.|++|++|...
T Consensus 222 ~~vE~~lva~~Dw~E--~~vA~NlV~e~ll~~L~~~~f~~~ 260 (383)
T d1mhyb_ 222 ATVQEIWQGVQDWNE--ILWAGHAVYDATFGQFARREFFQR 260 (383)
T ss_dssp HHHHHHHHSCCCHHH--HHHHHHHTHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHhcCccHHH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666664 66533 455567789999999999998654
No 9
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.40 E-value=1.4e+02 Score=21.06 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=14.9
Q ss_pred CCCccchhHHHHHHHHhcc
Q 022913 86 QSNPIKRDWATTLREAADG 104 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (290)
.....+++|+.+++++.+-
T Consensus 109 ~s~eek~~Wv~~L~~~i~~ 127 (132)
T d1v61a_ 109 NNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp CCSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3556678999999998765
No 10
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=4.37 E-value=2.7e+02 Score=23.37 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.5
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhhHHHHHHhhhh
Q 022913 239 SVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGF 274 (290)
Q Consensus 239 ale~~L~s~~~~a~~ll~l~~~VlAPI~EEIIFRGF 274 (290)
.+|..+...|+.- +++....|+=|++.|++|++|
T Consensus 198 ~vE~~l~~~Dw~E--~~vA~nlv~e~l~~~l~~~~l 231 (322)
T d2incb1 198 LIEKALIAWDWGE--AFTAINLVTKPAVEEALLQQL 231 (322)
T ss_dssp HHHHHTTCCSHHH--HHHHHHTTHHHHHHHHHTHHH
T ss_pred HHHHHhhcccHHH--HHHHHHHHHHHhhhHHHHHHH
Confidence 3455666666543 344456678899999999995
Done!