BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022914
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust.
Identities = 262/290 (90%), Positives = 283/290 (97%), Gaps = 1/290 (0%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHYADLTDASSLRRW+D I PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
RSH DSGR+ ++YYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY
Sbjct: 145 RSHTIDSGRT-VKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 203
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GLFACNGILFNHESPRRGENFVTRKITRA+GRIK+GLQ+KLFLGNLQASRDWGFAGDYVE
Sbjct: 204 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKG 240
AMW+MLQQEKPDDYVVATEE HTVEEFL+V+FGY+GLNWKD+V ID+RYFRPAEVDNL+G
Sbjct: 264 AMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG 323
Query: 241 DSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 290
D+SKA++VLGWKP+VGFE+LVKMMVDED+ELAKREKVLVDAGYMDA+QQP
Sbjct: 324 DASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 318 bits (816), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 204/309 (66%), Gaps = 31/309 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DL+D S+L R L + PDEVYNL A SHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 59 LHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 118
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+YG
Sbjct: 119 LGLEK---KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITRA+ I GL+S L+LGN+ + RDWG A DYV+
Sbjct: 176 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDH------------------- 222
WMMLQQE+P+D+V+AT ++V +F+E+A +G+ +
Sbjct: 236 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 295
Query: 223 --------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
+ +D RYFRPAEV+ L GD +KA + LGWKP + ++V MV D+E AK+
Sbjct: 296 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355
Query: 275 EKVLVDAGY 283
+L GY
Sbjct: 356 HSLLKSHGY 364
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 316 bits (810), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 207/292 (70%), Gaps = 23/292 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY DLTD++ L + ++ + P E+YNL AQSHV +SF++ +YTADV G LRLL+AV
Sbjct: 81 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAV 140
Query: 61 RS-HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
++ + +S +++YQA +SE++G PQ ETTPF+PRSPY A+K A+W VN+RE
Sbjct: 141 KTCGLINS----VKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFRE 196
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDY 178
AY LFA NGILFNHESPRRG NFVTRKI+R+V +I +G LGNL A RDWG A DY
Sbjct: 197 AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 256
Query: 179 VEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW---------------KD 221
VEAMW+MLQ ++P+D+V+AT E H+V EF+E +F ++G + W K
Sbjct: 257 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKV 316
Query: 222 HVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
HV +D +Y+RP EVD L+GD +KA++ L WKPRV F++LV+ MV D+EL +
Sbjct: 317 HVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 368
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 306 bits (784), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 204/297 (68%), Gaps = 23/297 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
+K+ + DL + S++ R ++ + PDEVYNLAAQS V VSFE P TA+V A G LR+LEA+
Sbjct: 54 VKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEAL 113
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
R+ D+ ++YQA +SEMFG PQ+E TPF+PRSPYA +K HW TVNYREA
Sbjct: 114 RTVKPDT-----KFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREA 168
Query: 120 YGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
Y +FAC+GILFNHESP RG FVTRKIT ++ RIK GLQ KL LGNL A RDWG+A +YV
Sbjct: 169 YNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228
Query: 180 EAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLN--W---------------KDH 222
EAMW+M+QQ +PDDYV+AT E+HTV EF+E A G + W K
Sbjct: 229 EAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVI 288
Query: 223 VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLV 279
V + + +FRPAEVD L G+ KA K LGWKPR F++LV++M++ D++ + +V V
Sbjct: 289 VEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDREVSV 345
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/271 (54%), Positives = 188/271 (69%), Gaps = 6/271 (2%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ DA S++R + P EVYNLAAQS V S+ P T V G LLEA+R
Sbjct: 70 GDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP 129
Query: 66 DSGRSHIRYYQAGSSEMFGSTPPP-QSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
++ R+YQA +SEMFG Q E TPF+PRSPY +K HW TVNYRE++GL A
Sbjct: 130 ET-----RFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHA 184
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWM 184
+GILFNHESP RG FVTRK+T AV RIK+G Q +L LGN+ A RDWGFAGDYVEAMW+
Sbjct: 185 SSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 244
Query: 185 MLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSK 244
MLQQ+K DDYVVAT + TV + ++AF +VGL+++D + ID +FRPAEVD L G+ +K
Sbjct: 245 MLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAK 304
Query: 245 ARKVLGWKPRVGFEQLVKMMVDEDIELAKRE 275
A++VLGWKPR ++L++MMV+ D+ RE
Sbjct: 305 AQRVLGWKPRTSLDELIRMMVEADLRRVSRE 335
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 12/258 (4%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAD 66
D+ D+ +++ + I PD +++LAA+S V S+ T G L +L+AVR D
Sbjct: 59 DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLD 118
Query: 67 SGRSHIRYYQAGSSEMFGSTPP---PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLF 123
R GSSE +G P P SE P SPY SK + Y +AYG+
Sbjct: 119 C-----RILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMD 173
Query: 124 ACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLF-LGNLQASRDWGFAGDYVEAM 182
+ FNH P + FVT+ + + I++ Q + +GNL+A RD+ D V+A
Sbjct: 174 IIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAY 233
Query: 183 WMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGD 241
W++ Q K D Y V + +++ L++ N K ++ RP+EV L G
Sbjct: 234 WLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMA--NVKIDTELNPLQLRPSEVPTLIGS 291
Query: 242 SSKARKVLGWKPRVGFEQ 259
+ + + GWKPR+ E+
Sbjct: 292 NKRLKDSTGWKPRIPLEK 309
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 33/289 (11%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
+AD+ D++ + R + PD V +LAA+SHV S P + G LLE R
Sbjct: 53 NFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVAR 112
Query: 62 ---SHIADSGRSHIRYYQAGSSEMFGSTPPPQ-----------SETTPFHPRSPYAASKC 107
S + + +++ R++ + E++G P P +ETT + P SPY+ASK
Sbjct: 113 KYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKA 172
Query: 108 AAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQ 167
++ +R YGL N+ P +F + I + G ++ G
Sbjct: 173 SSDHLVRAWRRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKPLPIY-GKGD 228
Query: 168 ASRDWGFAGDYVEAMWMMLQQEKP-DDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVID 226
RDW + D+ A+ M++ + K + Y + H ++ L+V F L D +V
Sbjct: 229 QIRDWLYVEDHARALHMVVTEGKAGETYNIG---GHNEKKNLDVVFTICDL--LDEIVPK 283
Query: 227 KRYF---------RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
+ RP D+ K + LGWKP FE ++ V+
Sbjct: 284 ATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 14/245 (5%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D V +LAA+SHV S P+ G LLE++R +R+ + E++
Sbjct: 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-----NPEVRFVHVSTDEVY 131
Query: 84 GSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFV 142
G +E P SPY+A+K A+ + + Y L A N+ P + F
Sbjct: 132 GDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQ---FP 188
Query: 143 TRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAM-WMMLQQEKPDDYVVATEES 201
+ I + + R +GL+ ++ G + RDW + D+V A+ ++L+ E + Y ++ E
Sbjct: 189 EKLIPKTIIRASLGLKIPIY-GTGKNVRDWLYVEDHVRAIELVLLKGESREIYNISAGEE 247
Query: 202 HTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLV 261
T E +++ +G K +I+ RP DS K + L W+P+ F++ +
Sbjct: 248 KTNLEVVKIILRLMG---KGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGI 304
Query: 262 KMMVD 266
K +D
Sbjct: 305 KKTID 309
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 48/291 (16%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D + + AA+SH S P G LLEA R + IR++ + E++
Sbjct: 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-------DIRFHHVSTDEVY 129
Query: 84 GSTP-----PPQSE--------TTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILF 130
G P P E T ++P SPY+++K A+ + ++G+ A
Sbjct: 130 GDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCS 189
Query: 131 NHESP-RRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQE 189
N+ P + E F+ R+IT I G++ KL+ G + RDW D+ +W +L +
Sbjct: 190 NNYGPYQHIEKFIPRQIT----NILAGIKPKLY-GEGKNVRDWIHTNDHSTGVWAILTKG 244
Query: 190 K-PDDYVVATEESHTVEEFLEVAFGYVGL--NWKDHVVI----DKRYFRPAEVDNLKGDS 242
+ + Y++ + +E LE+ +G + DHV D RY D+
Sbjct: 245 RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI---------DA 295
Query: 243 SKARKVLGWKPRV-----GFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQ 288
SK R LGW P+ G E+ ++ D + K EK V+A Y Q+
Sbjct: 296 SKLRDELGWTPQFTDFSEGLEETIQWYTDNQ-DWWKAEKEAVEANYAKTQE 345
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 119/274 (43%), Gaps = 33/274 (12%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAD 66
DL D + R P V + AAQ+ V VS E P +V G L LLEA R +
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY--- 107
Query: 67 SGRSHIRYYQAGSSEMFGSTPPPQ--SETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
G + + G + ++G P + ET P P+SPYAASK A Y Y ++YGL
Sbjct: 108 -GVEKLVFASTGGA-IYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKW 165
Query: 125 CNGILFNHESPRR---GENFVTRKIT-RAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
+ N PR+ GE V R + + + L ++ G+ RD+ + GD E
Sbjct: 166 VSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKG 240
A + L + Y V T E HT E L G + + RP +++
Sbjct: 226 AHALALFSLE-GIYNVGTGEGHTTREVLMAVAEAAGKAPE----VQPAPPRPGDLE---- 276
Query: 241 DSSKARKVL--------GWKPRVGFEQLVKMMVD 266
R VL GW+P+VGF++ +++ VD
Sbjct: 277 -----RSVLSPLKLMAHGWRPKVGFQEGIRLTVD 305
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D + L R PD V +LAA+SHV S + P + G LLEA R++
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ + +S R++ + E++G ST +ETTP+ P SPY+ASK ++ + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL L + S G K+ + + +S GN Q RDW + D+
Sbjct: 179 GL----PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHAR 234
Query: 181 AMWMMLQQEK 190
A++ + K
Sbjct: 235 ALYCVATTGK 244
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 34/252 (13%)
Query: 26 VYNLAAQSHVAVSFE--IPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
+ N AA+SHV S E IP Y +V+ G + LLE V+ + HI+ Q + E++
Sbjct: 102 IVNFAAESHVDRSIENPIPFYDTNVI--GTVTLLELVKKY------PHIKLVQVSTDEVY 153
Query: 84 GSTPPPQ--SETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP-RRGEN 140
GS +E TP P SPY++SK +A + Y + Y L N+ P + E
Sbjct: 154 GSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCSNNYGPYQYPEK 213
Query: 141 FVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDD-YVVATE 199
+ +T A+ K+ L G+ RDW D+ A+ ++L + + + Y +
Sbjct: 214 LIPLXVTNALEGKKLPL-----YGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGN 268
Query: 200 ESHTVEEFLEVAFGYVGLNWKDHVVI------DKRYFRPAEVDNLKGDSSKARKVLGWKP 253
T E +E +G KD + D+RY AE K + W+P
Sbjct: 269 NEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAE---------KXKNEFDWEP 319
Query: 254 RVGFEQLVKMMV 265
+ FEQ ++ V
Sbjct: 320 KYTFEQGLQETV 331
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPD--YTADVVATGALRLLEA 59
+L ADL A ++ +L +EV+++AA V + E PD Y +V+AT RLLEA
Sbjct: 46 RLVKADLA-ADDIKDYLKG--AEEVWHIAANPDVRIGAENPDEIYRNNVLAT--YRLLEA 100
Query: 60 VRSHIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
+R +G S I + +S ++G P E P HP S Y ASK A +Y
Sbjct: 101 MRK----AGVSRIVF--TSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCH 154
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAV-----GRIKIGLQSKLFLGNLQASRDWG 173
+ + A R N + R+ T V ++K + LGN + ++ +
Sbjct: 155 TFDMQAW---------IYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYI 205
Query: 174 FAGDYVEAMWMMLQ-QEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRP 232
+ D V+AM L+ E+ + + + +E+ V+ E+ +GL+ + FR
Sbjct: 206 YISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPR---------FRF 256
Query: 233 AEVD-NLKGD------SSKARKVLGWKPRVGFEQLVKMMVDEDIE 270
D KGD S + K LGWKPR E+ V+M V + +E
Sbjct: 257 TGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVRDLVE 301
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
Query: 5 YADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHI 64
+ D+ + + + R + +PD ++LA Q + S + P ++ G L LLEAVR +
Sbjct: 56 HGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN 115
Query: 65 ADSG------------RSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWY 112
++ +Y + + P E+T SPY SK AA Y
Sbjct: 116 SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQY 175
Query: 113 TVNYREAYGLFACNGILFNHESPRRGENFVT 143
++Y +GL N ++F H S G F T
Sbjct: 176 MLDYARIFGL---NTVVFRHSSMYGGRQFAT 203
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 27/264 (10%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
++ + D+ DA L R L + D + + AA+SHV S + G LL+
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYREA 119
D+G R + E++GS +E++P P SPYAASK + Y
Sbjct: 115 ----VDAGVG--RVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
Query: 120 YGL-----FACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGF 174
YGL CN N+ + E + +T + + L G+ R+W
Sbjct: 169 YGLDVRITRCCN----NYGPYQHPEKLIPLFVTNLLDGGTLPL-----YGDGANVREWVH 219
Query: 175 AGDYVEAMWMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPA 233
D+ + ++L + + Y + T E + +G +W + K R
Sbjct: 220 TDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSS---VRKVADRKG 276
Query: 234 EVDNLKGDSSKARKVLGWKPRVGF 257
D K + LG++P+V F
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSF 300
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 27/264 (10%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
++ + D+ DA L R L + D + + AA+SHV S + G LL+
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYREA 119
D+G R +++++GS +E++P P SPYAASK + Y
Sbjct: 115 ----VDAGVG--RVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
Query: 120 YGL-----FACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGF 174
YGL CN N+ + E + +T + + L G+ R+W
Sbjct: 169 YGLDVRITRCCN----NYGPYQHPEKLIPLFVTNLLDGGTLPL-----YGDGANVREWVH 219
Query: 175 AGDYVEAMWMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPA 233
D+ + ++L + + Y + T E + +G +W + K R
Sbjct: 220 TDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSS---VRKVADRKG 276
Query: 234 EVDNLKGDSSKARKVLGWKPRVGF 257
D K + LG++P+V F
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSF 300
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ D ++ + + + D V + AA V S P T TG L +L A ++
Sbjct: 86 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
S + A SS +G P P+ E +P SPYA +K Y Y YG
Sbjct: 144 QS------FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKT 197
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA-MW 183
FN R+ N + + G+ + SRD+ + + ++ +
Sbjct: 198 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 257
Query: 184 MMLQQEKPDD--YVVATEESHTVEEFLEVAFGYVGLNWKDHV---VIDKRYFRPAEVDNL 238
L ++ D Y VA + T+ E + Y LN H+ I R FR +V +
Sbjct: 258 SALAKDSAKDNIYNVAVGDRTTLNEL--SGYIYDELNLIHHIDKLSIKYREFRSGDVRHS 315
Query: 239 KGDSSKARKVLGWKPRVGFEQLVKM 263
+ D +KA +L ++P + + +++
Sbjct: 316 QADVTKAIDLLKYRPNIKIREGLRL 340
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ D ++ + + + D V + AA V S P T TG L +L A ++
Sbjct: 80 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
S + A SS +G P P+ E +P SPYA +K Y Y YG
Sbjct: 138 QS------FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKT 191
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA-MW 183
FN R+ N + + G+ + SRD+ + + ++ +
Sbjct: 192 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 251
Query: 184 MMLQQEKPDD--YVVATEESHTVEEFLEVAFGYVGLNWKDHV---VIDKRYFRPAEVDNL 238
L ++ D Y VA + T+ E + Y LN H+ I R FR +V +
Sbjct: 252 SALAKDSAKDNIYNVAVGDRTTLNEL--SGYIYDELNLIHHIDKLSIKYREFRSGDVRHS 309
Query: 239 KGDSSKARKVLGWKPRVGFEQLVKM 263
+ D +KA +L ++P + + +++
Sbjct: 310 QADVTKAIDLLKYRPNIKIREGLRL 334
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ D ++ + + + D V + AA V S P T TG L +L A ++
Sbjct: 99 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
S + A SS +G P P+ E +P SPYA +K Y Y YG
Sbjct: 157 QS------FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKT 210
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA-MW 183
FN R+ N + + G+ + SRD+ + + ++ +
Sbjct: 211 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 270
Query: 184 MMLQQEKPDD--YVVATEESHTVEEFLEVAFGYVGLNWKDHV---VIDKRYFRPAEVDNL 238
L ++ D Y VA + T+ E + Y LN H+ I R FR +V +
Sbjct: 271 SALAKDSAKDNIYNVAVGDRTTLNEL--SGYIYDELNLIHHIDKLSIKYREFRSGDVRHS 328
Query: 239 KGDSSKARKVLGWKPRVGFEQLVKM 263
+ D +KA +L ++P + + +++
Sbjct: 329 QADVTKAIDLLKYRPNIKIREGLRL 353
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 17/265 (6%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ D ++ + + + D V + AA V S P T TG L +L A ++
Sbjct: 86 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
S + A SS +G P P+ E +P SPYA +K Y Y YG
Sbjct: 144 QS------FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKT 197
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA-MW 183
FN R+ N + + G+ + SRD+ + + ++ +
Sbjct: 198 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 257
Query: 184 MMLQQEKPDD--YVVATEESHTVEEFLEVAFGYVGLNWKDHV---VIDKRYFRPAEVDNL 238
L ++ D Y VA + T+ E + Y LN H+ I R FR +V
Sbjct: 258 SALAKDSAKDNIYNVAVGDRTTLNEL--SGYIYDELNLIHHIDKLSIKYREFRSGDVRAS 315
Query: 239 KGDSSKARKVLGWKPRVGFEQLVKM 263
+ D +KA +L ++P + + +++
Sbjct: 316 QADVTKAIDLLKYRPNIKIREGLRL 340
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 33/249 (13%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D++Y+LA+ + P T G L +L + R R A +SE++
Sbjct: 71 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK-------RVGARLLLASTSEVY 123
Query: 84 GSTPP-PQSE-----TTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 137
G PQSE P PR+ Y K A Y + G+ +FN PR
Sbjct: 124 GDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM 183
Query: 138 GEN---FVTRKITRAVGRIKIGLQSKLFL--GNLQASRDWGFAGDYVEAMWMMLQQEKPD 192
N V+ I +A LQ + G+ +R + + D V + ++
Sbjct: 184 HMNDGRVVSNFILQA-------LQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSS 236
Query: 193 DYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVD--NLKGDSSKARKVLG 250
+ E HT+ EF ++ VG + ++ A+ D K D KA+ +LG
Sbjct: 237 PVNLGNPEEHTILEFAQLIKNLVGSGS------EIQFLSEAQDDPQKRKPDIKKAKLMLG 290
Query: 251 WKPRVGFEQ 259
W+P V E+
Sbjct: 291 WEPVVPLEE 299
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 29/258 (11%)
Query: 8 LTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADS 67
+TDA L R D+ P V H A +++ PD A+ AT + ++
Sbjct: 74 VTDAGLLERAFDSFKPTHVV------HSAAAYKDPDDWAEDAATNVQGSINVAKAASKAG 127
Query: 68 GRSHIRYYQAGSSEMFGSTPPP-QSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACN 126
+ + + A + P P S T PF + Y SK A EA+ + +
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPIDSPTAPF---TSYGISKTAG--------EAFLMMSDV 176
Query: 127 GILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMML 186
++ + G I R+K G K F + RD+ D++ + L
Sbjct: 177 PVVSLRLANVTGPRLAIGPIPTFYKRLKAG--QKCFCSD--TVRDFLDMSDFLAIADLSL 232
Query: 187 QQEKPDD-YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPA--EVDNLKGDSS 243
Q+ +P + V+T E H+++E +V YVG + V + P +V ++ D S
Sbjct: 233 QEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPV----VAPGADDVPSVVLDPS 288
Query: 244 KARKVLGWKPRVGFEQLV 261
K GWK +V F+ +
Sbjct: 289 KTETEFGWKAKVDFKDTI 306
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 26 VYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMFGS 85
VY+LA+ V SF+ P D V +G R L A+ + + + + E++G
Sbjct: 73 VYHLASHKSVPRSFKQPLDYLDNVDSG--RHLLALCTSVGVP-----KVVVGSTCEVYGQ 125
Query: 86 TPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGIL--FNHESP-RRGENF 141
P E +P PRSPYAASK ++ A + GI+ FN P R +
Sbjct: 126 ADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRA-SVAPEVGIVRFFNVYGPGERPDAL 184
Query: 142 VTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEES 201
V R + R ++ ++ G+ + RD+ + D V+ + + + P + +S
Sbjct: 185 VPRLCANLLTRNELPVE-----GDGEQRRDFTYITDVVDKLVALANRPLPSVVNFGSGQS 239
Query: 202 HTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKP-RVGFEQL 260
+V + + + + ++ RP E+ + D++ + +G + +G E+
Sbjct: 240 LSVNDVIRILQAT-----SPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEG 294
Query: 261 VKMMVD 266
+++ ++
Sbjct: 295 IRLTLE 300
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 93/249 (37%), Gaps = 33/249 (13%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D++Y+LA+ + P T G L L + R R A +SE++
Sbjct: 93 DQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAK-------RVGARLLLASTSEVY 145
Query: 84 GSTP-PPQSE-----TTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 137
G PQSE P PR+ Y K A Y + G+ +FN PR
Sbjct: 146 GDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRX 205
Query: 138 GEN---FVTRKITRAVGRIKIGLQSKLFL--GNLQASRDWGFAGDYVEAMWMMLQQEKPD 192
N V+ I +A LQ + G+ +R + + D V + +
Sbjct: 206 HXNDGRVVSNFILQA-------LQGEPLTVYGSGSQTRAFQYVSDLVNGLVALXNSNVSS 258
Query: 193 DYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVD--NLKGDSSKARKVLG 250
+ E HT+ EF ++ VG + ++ A+ D K D KA+ LG
Sbjct: 259 PVNLGNPEEHTILEFAQLIKNLVGSGS------EIQFLSEAQDDPQKRKPDIKKAKLXLG 312
Query: 251 WKPRVGFEQ 259
W+P V E+
Sbjct: 313 WEPVVPLEE 321
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 108/286 (37%), Gaps = 57/286 (19%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D V ++ A V S P D G LRLL+A+ H D + + S+ +F
Sbjct: 95 DAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD------KIIFSSSAAIF 148
Query: 84 G--------STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFN---- 131
G + P P SPY SK A + EAYG+ FN
Sbjct: 149 GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGA 208
Query: 132 HESPRRGENF--VTRKITRAVGRI--KIGLQSKLFLGNLQAS------------------ 169
HE GE++ T I +GR+ I +L + ++
Sbjct: 209 HEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTC 268
Query: 170 -RDWGFAGDYVEAMWMML---QQEKPDD-------YVVATEESHTVEEFLEVAFGYVGLN 218
RD+ D A + L ++ P+D + + T ++V E +EVA G
Sbjct: 269 VRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTG-- 326
Query: 219 WKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMM 264
+ + + R + L S KAR+VLGWKP+ ++ L +M
Sbjct: 327 --HPIPVRECGRREGDPAYLVAASDKAREVLGWKPK--YDTLEAIM 368
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 15/238 (6%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D V + AA V S P + G L +L A R S + A SS +
Sbjct: 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS------FTYAASSSTY 157
Query: 84 GSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFV 142
G P P+ E T P SPYA +K Y + YG FN R+ N
Sbjct: 158 GDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGA 217
Query: 143 TRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQ---QEKPDDYVVATE 199
+ I G+ + SRD+ + + V+A + + Y +A
Sbjct: 218 YAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVG 277
Query: 200 ESHTVEEF---LEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPR 254
++ + L G+++ V R FR +V + D SKA K+LG+ P+
Sbjct: 278 GRTSLNQLFFALRDGLAENGVSYHREPVY--RDFREGDVRHSLADISKAAKLLGYAPK 333
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 41/277 (14%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
K + DL D + LR + V + AA S V VS E P + GAL LLE +
Sbjct: 47 KFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMD 106
Query: 62 SHIADSGRSHIRYYQAGSSEMFGSTPPPQ-SETTPFHPRSPYAASKCAA----HWYTVNY 116
D ++ + ++ +G +E T +P + Y +K A HWY+
Sbjct: 107 EFKVD------KFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS 160
Query: 117 REAYGLF--------ACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFL----- 163
Y +F NGI+ P + V ++ +G + K+ +
Sbjct: 161 NLRYKIFRYFNVAGATPNGIIGEDHRPET-------HLIPLVLQVALGQREKIMMFGDDY 213
Query: 164 --GNLQASRDWGFAGDYVEAMWMMLQQ----EKPDDYVVATEESHTVEEFLEVAFGYVGL 217
+ RD+ D V A ++ L+ + D Y + +V+E ++ A V
Sbjct: 214 NTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVD-AVREVTN 272
Query: 218 NWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPR 254
+ V +R PA L S KA++ LGW PR
Sbjct: 273 HEIPAEVAPRRAGDPAR---LVASSQKAKEKLGWDPR 306
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 36/276 (13%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIP--DYTADVVATGALRLLEA 59
+LH DL D S W I D V++ AA V +S P + +VVAT +LE
Sbjct: 42 ELHVRDLKDYS----WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVAT--FNVLEW 95
Query: 60 VRSHIADSGRSHIRYYQAGSSEMFGST---PPPQSETTPFHPRSPYAASKCAAHWYTVNY 116
R +G + + A SS ++G P P+ E P+ P S Y A+K A Y
Sbjct: 96 ARQ----TGVRTVVF--ASSSTVYGDADVIPTPEEE--PYKPISVYGAAKAAGEVMCATY 147
Query: 117 REAYGLFACNGILFNHESPRRGENFV---TRKITRAVGRIKIGLQSKLFLGNLQASRDWG 173
+G+ N PR + K+ R +++ LG+ + +
Sbjct: 148 ARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEV-------LGDGTQRKSYL 200
Query: 174 FAGDYVEAMWMMLQQEKPDD-----YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKR 228
+ D VEA ++ + D V ++ V + ++ +GL + +V
Sbjct: 201 YVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP 260
Query: 229 YFR--PAEVDNLKGDSSKARKVLGWKPRVGFEQLVK 262
R P +V + +K K+ GW+P + + VK
Sbjct: 261 DGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVK 296
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 38/277 (13%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIP--DYTADVVATGALRLLEA 59
+LH DL D S W I D V++ AA V +S P + +VVAT +LE
Sbjct: 46 ELHVRDLKDYS----WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVAT--FNVLEW 99
Query: 60 VRSHIADSGRSHIRYYQAGSSEMFGST---PPPQSETTPFHPRSPYAASKCAAHWYTVNY 116
R +G + + A SS ++G P P+ E P+ P S Y A+K A Y
Sbjct: 100 ARQ----TGVRTVVF--ASSSTVYGDADVIPTPEEE--PYKPISVYGAAKAAGEVMCATY 151
Query: 117 REAYGLFACNGILF-NHESPRRGENFV---TRKITRAVGRIKIGLQSKLFLGNLQASRDW 172
+G+ C + + N PR + K+ R +++ LG+ + +
Sbjct: 152 ARLFGV-RCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEV-------LGDGTQRKSY 203
Query: 173 GFAGDYVEAMWMMLQQEKPDD-----YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 227
+ D VEA ++ + D V ++ V + ++ +GL + +V
Sbjct: 204 LYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPST 263
Query: 228 RYFR--PAEVDNLKGDSSKARKVLGWKPRVGFEQLVK 262
R P +V + +K K+ GW+P + + VK
Sbjct: 264 PDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVK 300
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
M+ H D+ D LR + P+ V+++AAQ V +S+E P T G + LLE V
Sbjct: 59 MESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETV 118
Query: 61 R 61
+
Sbjct: 119 K 119
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 232 PAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLV 279
P E LK D SKA LGW PR G + + +V + E +L+
Sbjct: 297 PHEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGEDMLI 344
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 110/285 (38%), Gaps = 33/285 (11%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
M+ D+ D + L + P+ V+++AAQ V +S+ P T G + LLEA+
Sbjct: 59 MQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAI 118
Query: 61 RSHIADSGRSHIRYYQAGSSE--MFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
R +I + ++ ++G E PY+ SK A T +YR
Sbjct: 119 RHVGGVKAVVNITSDKCYDNKEWIWG-----YRENEAMGGYDPYSNSKGCAELVTSSYRN 173
Query: 119 AYGLFACNGILFNHESPRRGENFVTR---KITRAVGRIKIGLQSK--LFLGNLQASRDWG 173
++ A G + R N + + R V I + + + N A R W
Sbjct: 174 SFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQ 233
Query: 174 FAGDYVEAMWMMLQQE-------------KPDDYVVATEESHTVEEFLEVAFGYVGLNWK 220
+ + ++ Q+ P+D AT + VE+ V + G +W+
Sbjct: 234 HVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPND-ADATPVKNIVEQM--VKYWGEGASWQ 290
Query: 221 DHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
+D P E LK D SKA+ LGW PR ++ +V
Sbjct: 291 ----LDGN-AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIV 330
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 56 LLEAVRSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA 104
LLE VR H A + +H S G+T P P P P+A
Sbjct: 337 LLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETALPAAPAKPHAC 385
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 56 LLEAVRSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA 104
LLE VR H A + +H S G+T P P P P+A
Sbjct: 337 LLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETALPAAPAKPHAC 385
>pdb|4ECG|A Chain A, Crystal Structure Of A Putative Iron-Regulated Protein A
Precursor (Bdi_2603) From Parabacteroides Distasonis
Atcc 8503 At 2.30 A Resolution
Length = 381
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 47 DVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPF 96
+++ATG + A+ G ++R + +F P ET+PF
Sbjct: 120 EIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKXLFLDGEPRDLETSPF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,891,042
Number of Sequences: 62578
Number of extensions: 365337
Number of successful extensions: 819
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 44
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)