BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022914
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93031|GMD2_ARATH GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1
SV=3
Length = 373
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/290 (90%), Positives = 283/290 (97%), Gaps = 1/290 (0%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHYADLTDASSLRRW+D I PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
RSH DSGR+ ++YYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY
Sbjct: 145 RSHTIDSGRT-VKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 203
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GLFACNGILFNHESPRRGENFVTRKITRA+GRIK+GLQ+KLFLGNLQASRDWGFAGDYVE
Sbjct: 204 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKG 240
AMW+MLQQEKPDDYVVATEE HTVEEFL+V+FGY+GLNWKD+V ID+RYFRPAEVDNL+G
Sbjct: 264 AMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG 323
Query: 241 DSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 290
D+SKA++VLGWKP+VGFE+LVKMMVDED+ELAKREKVLVDAGYMDA+QQP
Sbjct: 324 DASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
>sp|Q9SNY3|GMD1_ARATH GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2
SV=1
Length = 361
Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust.
Identities = 261/290 (90%), Positives = 281/290 (96%), Gaps = 1/290 (0%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY DL+DASSLRRWLD I PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV
Sbjct: 73 MKLHYGDLSDASSLRRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 132
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
RSH D+GR+ I+YYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY
Sbjct: 133 RSHNIDNGRA-IKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 191
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL+ACNGILFNHESPRRGENFVTRKITRA+GRIK+GLQ+KLFLGN+QASRDWGFAGDYVE
Sbjct: 192 GLYACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVE 251
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKG 240
AMW+MLQQEKPDDYVVATEESHTV+EFL+V+FGYVGLNWKDHV IDKRYFRP EVDNLKG
Sbjct: 252 AMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKG 311
Query: 241 DSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 290
D+SKA+++LGWKP+VGFE+LVKMMVDED+ELAKREKVL DAGYMDAQQQP
Sbjct: 312 DASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQP 361
>sp|P0AC91|GM4D_SHIFL GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1
Length = 373
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 204/309 (66%), Gaps = 31/309 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DL+D S+L R L + PDEVYNL A SHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 60 LHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 119
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+YG
Sbjct: 120 LGLEK---KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 176
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITRA+ I GL+S L+LGN+ + RDWG A DYV+
Sbjct: 177 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 236
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDH------------------- 222
WMMLQQE+P+D+V+AT ++V +F+E+A +G+ +
Sbjct: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 296
Query: 223 --------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
+ +D RYFRPAEV+ L GD +KA + LGWKP + ++V MV D+E AK+
Sbjct: 297 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 356
Query: 275 EKVLVDAGY 283
+L GY
Sbjct: 357 HSLLKSHGY 365
>sp|P0AC88|GM4D_ECOLI GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd
PE=1 SV=1
Length = 373
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 204/309 (66%), Gaps = 31/309 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DL+D S+L R L + PDEVYNL A SHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 60 LHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 119
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+YG
Sbjct: 120 LGLEK---KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 176
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITRA+ I GL+S L+LGN+ + RDWG A DYV+
Sbjct: 177 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 236
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDH------------------- 222
WMMLQQE+P+D+V+AT ++V +F+E+A +G+ +
Sbjct: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 296
Query: 223 --------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
+ +D RYFRPAEV+ L GD +KA + LGWKP + ++V MV D+E AK+
Sbjct: 297 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 356
Query: 275 EKVLVDAGY 283
+L GY
Sbjct: 357 HSLLKSHGY 365
>sp|P0AC89|GM4D_ECOL6 GDP-mannose 4,6-dehydratase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=gmd PE=3 SV=1
Length = 373
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 204/309 (66%), Gaps = 31/309 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DL+D S+L R L + PDEVYNL A SHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 60 LHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 119
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+YG
Sbjct: 120 LGLEK---KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 176
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITRA+ I GL+S L+LGN+ + RDWG A DYV+
Sbjct: 177 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 236
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDH------------------- 222
WMMLQQE+P+D+V+AT ++V +F+E+A +G+ +
Sbjct: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 296
Query: 223 --------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
+ +D RYFRPAEV+ L GD +KA + LGWKP + ++V MV D+E AK+
Sbjct: 297 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 356
Query: 275 EKVLVDAGY 283
+L GY
Sbjct: 357 HSLLKSHGY 365
>sp|P0AC90|GM4D_ECO57 GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 GN=gmd PE=3
SV=1
Length = 373
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 204/309 (66%), Gaps = 31/309 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DL+D S+L R L + PDEVYNL A SHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 60 LHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 119
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+YG
Sbjct: 120 LGLEK---KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 176
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITRA+ I GL+S L+LGN+ + RDWG A DYV+
Sbjct: 177 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 236
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDH------------------- 222
WMMLQQE+P+D+V+AT ++V +F+E+A +G+ +
Sbjct: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 296
Query: 223 --------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
+ +D RYFRPAEV+ L GD +KA + LGWKP + ++V MV D+E AK+
Sbjct: 297 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 356
Query: 275 EKVLVDAGY 283
+L GY
Sbjct: 357 HSLLKSHGY 365
>sp|Q9VMW9|GMDS_DROME GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1
SV=2
Length = 395
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 204/295 (69%), Gaps = 21/295 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY D+TD+SSL + ++ + P E+YNLAAQSHV VSF++ +YTA+V A G LR+L+A+
Sbjct: 103 MKLHYGDMTDSSSLVKIINMVKPTEIYNLAAQSHVKVSFDLSEYTAEVDAVGTLRILDAI 162
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
R+ + ++R+YQA +SE++G PQ+E TPF+PRSPYA +K W +NYREA
Sbjct: 163 RTCGMEK---NVRFYQASTSELYGKVVETPQNEQTPFYPRSPYACAKMYGFWIVINYREA 219
Query: 120 YGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
Y ++ACNGILFNHESPRRGENFVTRKITR+V +I LGNL + RDWG A DYV
Sbjct: 220 YNMYACNGILFNHESPRRGENFVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYV 279
Query: 180 EAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNWKD---------------H 222
EAMWMMLQ+E P DYV+AT E+H+V EF+E AF ++ + WK
Sbjct: 280 EAMWMMLQRESPSDYVIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVR 339
Query: 223 VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKV 277
V I+ +YFRP EVD L+GD+SKA + L W P+V F +LV M+ DIEL ++ +
Sbjct: 340 VRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394
>sp|Q8K0C9|GMDS_MOUSE GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1
Length = 372
Score = 317 bits (811), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 207/292 (70%), Gaps = 23/292 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY DLTD++ L + ++ + P E+YNL AQSHV +SF++ +YTADV G LRLL+A+
Sbjct: 80 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAI 139
Query: 61 RS-HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
++ + +S +++YQA +SE++G PQ ETTPF+PRSPY A+K A+W VN+RE
Sbjct: 140 KTCGLINS----VKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFRE 195
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDY 178
AY LFA NGILFNHESPRRG NFVTRKI+R+V +I +G LGNL A RDWG A DY
Sbjct: 196 AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 255
Query: 179 VEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW---------------KD 221
VEAMW+MLQ ++P+D+V+AT E H+V EF+E +F ++G + W K
Sbjct: 256 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKV 315
Query: 222 HVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
HV +D +Y+RP EVD L+GD SKA++ L WKPRV F++LV+ MV D+EL +
Sbjct: 316 HVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
>sp|Q8K3X3|GMDS_CRIGR GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1
Length = 372
Score = 317 bits (811), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 207/292 (70%), Gaps = 23/292 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY DLTD++ L + ++ + P E+YNL AQSHV +SF++ +YTADV G LRLL+A+
Sbjct: 80 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAI 139
Query: 61 RS-HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
++ + +S +++YQA +SE++G PQ ETTPF+PRSPY A+K A+W VN+RE
Sbjct: 140 KTCGLINS----VKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFRE 195
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDY 178
AY LFA NGILFNHESPRRG NFVTRKI+R+V +I +G LGNL A RDWG A DY
Sbjct: 196 AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 255
Query: 179 VEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW---------------KD 221
VEAMW+MLQ ++P+D+V+AT E H+V EF+E +F ++G + W K
Sbjct: 256 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKI 315
Query: 222 HVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
HV +D +Y+RP EVD L+GD SKA++ L WKPRV F++LV+ MV D+EL +
Sbjct: 316 HVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
>sp|O60547|GMDS_HUMAN GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1
Length = 372
Score = 315 bits (808), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 207/292 (70%), Gaps = 23/292 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
MKLHY DLTD++ L + ++ + P E+YNL AQSHV +SF++ +YTADV G LRLL+AV
Sbjct: 80 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAV 139
Query: 61 RS-HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
++ + +S +++YQA +SE++G PQ ETTPF+PRSPY A+K A+W VN+RE
Sbjct: 140 KTCGLINS----VKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFRE 195
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDY 178
AY LFA NGILFNHESPRRG NFVTRKI+R+V +I +G LGNL A RDWG A DY
Sbjct: 196 AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 255
Query: 179 VEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW---------------KD 221
VEAMW+MLQ ++P+D+V+AT E H+V EF+E +F ++G + W K
Sbjct: 256 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKV 315
Query: 222 HVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
HV +D +Y+RP EVD L+GD +KA++ L WKPRV F++LV+ MV D+EL +
Sbjct: 316 HVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367
>sp|Q56872|GM4D_YERE8 Probable GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=gmd PE=3 SV=2
Length = 372
Score = 314 bits (805), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/310 (52%), Positives = 207/310 (66%), Gaps = 33/310 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DLTD S+L R + I PDE+YNL AQSHVAVSFE P+YTADV A G LRLLEAVR
Sbjct: 59 LHYGDLTDTSNLIRLVKEIQPDEIYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAVRI 118
Query: 63 HIADSGRSH-IRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ G H R+YQA +SE++G PQ ETTPF+PRSPYA +K A+W TVNYRE+Y
Sbjct: 119 N----GLEHKTRFYQASTSELYGLVQEIPQRETTPFYPRSPYAVAKMYAYWITVNYRESY 174
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
G++ACNGILFNHESPRRGE FVTRKITRA+ I +GL+ L+LGN+ + RDWG A DYV
Sbjct: 175 GMYACNGILFNHESPRRGETFVTRKITRAIANIALGLEDCLYLGNMDSLRDWGHAKDYVR 234
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEF---------LEVAFGYVGLN------------- 218
WMMLQQ++P+D+V+AT + TV EF +E+ F G++
Sbjct: 235 MQWMMLQQDQPEDFVIATGKQITVREFVRMSAKEAGIEIEFSGKGIDEIATISAISDEYA 294
Query: 219 ----WKDHVV-IDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
D +V +D RYFRPAEV+ L GD SKA++ LGW P + E++ MV D++ AK
Sbjct: 295 TSAKVGDIIVRVDPRYFRPAEVETLLGDPSKAKEKLGWVPEITVEEMCAEMVAGDLQQAK 354
Query: 274 REKVLVDAGY 283
+ +L G+
Sbjct: 355 QHALLKANGF 364
>sp|Q1ZXF7|GMDS_DICDI GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=1
SV=1
Length = 356
Score = 313 bits (802), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/291 (53%), Positives = 198/291 (68%), Gaps = 21/291 (7%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
+ LHY DLTDAS+L + + P E+YNL AQSHV VSF++ +YT DV G LRLL+A+
Sbjct: 63 LTLHYGDLTDASNLHSIVSKVNPTEIYNLGAQSHVKVSFDMSEYTGDVDGLGCLRLLDAI 122
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
RS ++YYQA +SE++G PQSETTPF+PRSPYA +K A+W VNYREA
Sbjct: 123 RSC---GMEKKVKYYQASTSELYGKVQEIPQSETTPFYPRSPYAVAKQYAYWIVVNYREA 179
Query: 120 YGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
Y ++ACNGILFNHESPRRG FVTRKITR V I G L+LGN+ A RDWG A DYV
Sbjct: 180 YDMYACNGILFNHESPRRGPTFVTRKITRFVAGIACGRDEILYLGNINAKRDWGHARDYV 239
Query: 180 EAMWMMLQQEKPDDYVVATEESHTVEEFLEVAF-----------------GYVGLNWKDH 222
EAMW+MLQQEKP+D+V+AT E+H+V EF+E +F GY K +
Sbjct: 240 EAMWLMLQQEKPEDFVIATGETHSVREFVEKSFKEIDIIIKWRGEAEKEEGYCEKTGKVY 299
Query: 223 VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
V ID++Y+RP EVD L G+ +KA+K+L W+ + F +LVK MV +DIE K
Sbjct: 300 VKIDEKYYRPTEVDLLLGNPNKAKKLLQWQIKTSFGELVKEMVAKDIEYIK 350
>sp|Q06952|GM4D1_VIBCH Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=rfbD PE=3
SV=1
Length = 373
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 207/311 (66%), Gaps = 31/311 (9%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
KLHY DLTD+S+L R L + PDEVYNL AQSHVAVSF+ P+YTADV A G LRLLEA+
Sbjct: 59 FKLHYGDLTDSSNLTRILAEVQPDEVYNLGAQSHVAVSFQSPEYTADVDAIGTLRLLEAI 118
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
R + + ++ ++YQA +SE++G PQ ETTPF+PRSPYA +K A+W T+NYRE+
Sbjct: 119 R-FLGLTKKT--KFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKMYAYWITINYRES 175
Query: 120 YGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
YG++ACNGILFNHESPRRGE FVTRKITR + I GL+ LF+GNL A RDWG A DYV
Sbjct: 176 YGIYACNGILFNHESPRRGETFVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYV 235
Query: 180 EAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWK------------------- 220
+ WMMLQQ++P D+V+AT ++V EF++++ +G+ +
Sbjct: 236 KMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELEFVGKGVDEKAVVKSVIGTK 295
Query: 221 -------DHVV-IDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELA 272
D +V +D YFRPAEV+ L GD S A+K LGW P + +Q+V MV D+E A
Sbjct: 296 APAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGWVPEITLQQMVSEMVASDLEQA 355
Query: 273 KREKVLVDAGY 283
+ +L GY
Sbjct: 356 QSHALLKKHGY 366
>sp|Q56598|GM4D2_VIBCL Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD
PE=3 SV=2
Length = 372
Score = 308 bits (788), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 202/304 (66%), Gaps = 31/304 (10%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY DLTD+S+L R L + PDEVYNL AQSHVAVSFE P+YTADV A G LRLLEA+R
Sbjct: 60 LHYGDLTDSSNLTRILQEVKPDEVYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAIRL 119
Query: 63 HIADSGRSHIRYYQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ ++YQA +SE++G PQ ETTPF+PRSPYA +K A+W VNYRE+YG
Sbjct: 120 LGLEKT---TKFYQASTSELYGLVQETPQKETTPFYPRSPYAVAKMYAYWIVVNYRESYG 176
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
++ACNGILFNHESPRRGE FVTRKITR + I GL+ L++GN+ A RDWG A DYV
Sbjct: 177 MYACNGILFNHESPRRGETFVTRKITRGLANIAQGLEKCLYMGNMDALRDWGHAKDYVRM 236
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLE-------VAFGYVG------------------ 216
WMMLQQ++P+D+V+AT ++V +F+E V + G
Sbjct: 237 QWMMLQQDQPEDFVIATGVQYSVRQFIEWSAKELGVTLTFEGQGVDEKGIVTAIEGDKAP 296
Query: 217 -LNWKDHVV-IDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
L D VV ID RYFRPAEV+ L GD SKA++ LGW P + +++ MV ED+++A+R
Sbjct: 297 ALKVGDVVVQIDPRYFRPAEVETLLGDPSKAKQKLGWTPEITVQEMCAEMVMEDLKVAQR 356
Query: 275 EKVL 278
+L
Sbjct: 357 HALL 360
>sp|Q18801|GMD1_CAEEL GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis elegans GN=bre-1
PE=1 SV=3
Length = 399
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/288 (53%), Positives = 197/288 (68%), Gaps = 20/288 (6%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY D+TD+S L + + TI P EVY+LAAQSHV VSF++P+YTA+V A G LRLL+A+
Sbjct: 110 LHYGDMTDSSCLIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIH- 168
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
A +R+YQA +SE++G PQSE TPF+PRSPYA +K +W VNYREAY
Sbjct: 169 --ACRLTEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYN 226
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
+FACNGILFNHESPRRGE FVTRKITR+V +I +G Q + LGNL A RDWG A +YVEA
Sbjct: 227 MFACNGILFNHESPRRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEA 286
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW-----------KDHVV---I 225
MW +LQ + PDD+V+AT + +V EF +AF +G L W KD V+ +
Sbjct: 287 MWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKDGVIRVKV 346
Query: 226 DKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
+Y+RP EV+ L G++ KA+K LGW+ +V +LVK MV DI L K
Sbjct: 347 SPKYYRPTEVETLLGNAEKAKKTLGWEAKVTVPELVKEMVASDIILMK 394
>sp|O45583|GMD2_CAEEL GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2
PE=1 SV=1
Length = 382
Score = 304 bits (779), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 197/286 (68%), Gaps = 20/286 (6%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY D+TD+S L + + TI P E+Y+LAAQSHV VSF++P+YTA+V A G LRLL+A+
Sbjct: 93 LHYGDMTDSSCLIKLISTIEPTEIYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIH- 151
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
A +R+YQA +SE++G PQSE TPF+PRSPYA +K +W VNYREAY
Sbjct: 152 --ACRLTEKVRFYQASTSELYGKVQEIPQSELTPFYPRSPYAVAKMYGYWIVVNYREAYK 209
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
+FACNGILFNHESPRRGE FVTRKITR+V +I + Q + LGNL A RDWG A +YVEA
Sbjct: 210 MFACNGILFNHESPRRGETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVEA 269
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG--LNW-----------KDHVV---I 225
MW +LQQ+ PDD+V+AT + +V EF +AF +G L W +D VV +
Sbjct: 270 MWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKV 329
Query: 226 DKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIEL 271
+Y+RP EV+ L G+ +KARK LGW+P++ +LVK MV DI L
Sbjct: 330 SPKYYRPTEVETLLGNPAKARKTLGWEPKITVPELVKEMVASDIAL 375
>sp|A8Y0L5|GMD1_CAEBR GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1
PE=3 SV=2
Length = 377
Score = 302 bits (773), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 194/288 (67%), Gaps = 20/288 (6%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY D+TD+S L + + TI P EVY+LAAQSHV VSF++P+YTA+V A G LRLL+A+
Sbjct: 88 LHYGDMTDSSCLIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIH- 146
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
A +R+YQA +SE++G PQSE TPF+PRSPYA +K +W VNYREAY
Sbjct: 147 --ACRLTEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYK 204
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
+FACNGILFNHESPRRGE FVTRKITR+V +I +G Q + LGNL A RDWG A +YVEA
Sbjct: 205 MFACNGILFNHESPRRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEA 264
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVG-------------LNWKDHVV---I 225
MW +LQ + PDD+V+AT + +V EF +AF +G KD +V +
Sbjct: 265 MWRILQHDAPDDFVIATGKQFSVREFCNLAFAEIGEVLEWEGEGVEEVGKNKDGIVRVKV 324
Query: 226 DKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 273
+Y+RP EV+ L G+ KA+K LGW+ +V +LVK MV DI L K
Sbjct: 325 SPKYYRPTEVETLLGNPEKAKKTLGWEAKVTVPELVKEMVASDIALMK 372
>sp|P55354|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234)
GN=noeL PE=3 SV=1
Length = 351
Score = 291 bits (745), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 190/285 (66%), Gaps = 21/285 (7%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY D+TD+++L R + P E+YNLAAQSHV VSFE P+YTA+ A G LR+LEA+R
Sbjct: 62 LHYGDMTDSTNLLRIVQQTQPHEIYNLAAQSHVQVSFETPEYTANADAIGTLRMLEAIRI 121
Query: 63 HIADSGRSHIRYYQAGSSEMFG-STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 121
+ + R+ R+YQA +SE++G + PQ+E TPF+PRSPYAA+K A+W VNYREAYG
Sbjct: 122 -LGLTNRT--RFYQASTSELYGLAQESPQNEKTPFYPRSPYAAAKLYAYWIVVNYREAYG 178
Query: 122 LFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEA 181
+ A NGILFNHESP RGE FVTRKITRA I +G Q L+LGNL A RDWG A +YV
Sbjct: 179 MHASNGILFNHESPLRGETFVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVRG 238
Query: 182 MWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLN--W---------------KDHVV 224
MWMM QQ++P DYV+AT + +V F+E AF G+ W + V
Sbjct: 239 MWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGRCVVA 298
Query: 225 IDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDI 269
+D RYFRP EVD L GD++KAR+VLGW+ L MV ED+
Sbjct: 299 VDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDL 343
>sp|O85713|NOEL_RHIFH GDP-mannose 4,6-dehydratase OS=Rhizobium fredii (strain HH103)
GN=noeL PE=3 SV=1
Length = 351
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 188/286 (65%), Gaps = 23/286 (8%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
LHY D+TD+++L R + P E+YNLAAQSHV VSFE P+YTA+ A G LR+LEA+R
Sbjct: 62 LHYGDMTDSTNLLRIVQQTQPHEIYNLAAQSHVQVSFETPEYTANADAIGTLRMLEAIRI 121
Query: 63 HIADSGRSH-IRYYQAGSSEMFG-STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
G H R+YQA +SE++G + PQ+E TPF+PRSPYAA+K A+W VNYREAY
Sbjct: 122 ----LGLIHRTRFYQASTSELYGLAQEIPQNEKTPFYPRSPYAAAKLYAYWIVVNYREAY 177
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
G+ A NGILFNHESP RGE FVTRKITRA I +G Q L+LGNL A RDWG A +YV
Sbjct: 178 GMHASNGILFNHESPLRGETFVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVR 237
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLN--W---------------KDHV 223
MWMM QQ++P DYV+AT + +V F+E AF G+ W K V
Sbjct: 238 GMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGKCVV 297
Query: 224 VIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDI 269
+D RYFRP EVD L GD++KAR+VLGW+ L MV ED+
Sbjct: 298 AVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDL 343
>sp|Q51366|GM4D_PSEAE GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=gca PE=1
SV=2
Length = 323
Score = 284 bits (727), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 147/271 (54%), Positives = 188/271 (69%), Gaps = 6/271 (2%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
D+ DA S++R + P EVYNLAAQS V S+ P T V G LLEA+R
Sbjct: 58 GDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP 117
Query: 66 DSGRSHIRYYQAGSSEMFGSTPPP-QSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 124
++ R+YQA +SEMFG Q E TPF+PRSPY +K HW TVNYRE++GL A
Sbjct: 118 ET-----RFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHA 172
Query: 125 CNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWM 184
+GILFNHESP RG FVTRK+T AV RIK+G Q +L LGN+ A RDWGFAGDYVEAMW+
Sbjct: 173 SSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 232
Query: 185 MLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSK 244
MLQQ+K DDYVVAT + TV + ++AF +VGL+++D + ID +FRPAEVD L G+ +K
Sbjct: 233 MLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAK 292
Query: 245 ARKVLGWKPRVGFEQLVKMMVDEDIELAKRE 275
A++VLGWKPR ++L++MMV+ D+ RE
Sbjct: 293 AQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
>sp|Q6T1X6|RMD_ANETH GDP-6-deoxy-D-mannose reductase OS=Aneurinibacillus
thermoaerophilus GN=rmd PE=1 SV=1
Length = 309
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 12/258 (4%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAD 66
D+ D+ +++ + I PD +++LAA+S V S+ T G L +L+AVR D
Sbjct: 47 DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLD 106
Query: 67 SGRSHIRYYQAGSSEMFGSTPP---PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLF 123
R GSSE +G P P SE P SPY SK + Y +AYG+
Sbjct: 107 C-----RILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMD 161
Query: 124 ACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLF-LGNLQASRDWGFAGDYVEAM 182
+ FNH P + FVT+ + + I++ Q + +GNL+A RD+ D V+A
Sbjct: 162 IIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAY 221
Query: 183 WMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGD 241
W++ Q K D Y V + +++ L++ N K ++ RP+EV L G
Sbjct: 222 WLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMA--NVKIDTELNPLQLRPSEVPTLIGS 279
Query: 242 SSKARKVLGWKPRVGFEQ 259
+ + + GWKPR+ E+
Sbjct: 280 NKRLKDSTGWKPRIPLEK 297
>sp|Q9HTB6|RMD_PSEAE GDP-6-deoxy-D-mannose reductase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rmd
PE=1 SV=1
Length = 304
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 17/271 (6%)
Query: 4 HYADLTDASSL-RRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
H DL + SL W + LPD V +LA Q++V +F P T + G L LL+A+++
Sbjct: 36 HRYDLLEPDSLGDLWPE--LPDAVIHLAGQTYVPEAFRDPARTLQINLLGTLNLLQALKA 93
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTP----PPQSETTPFHPRSPYAASKCAAHWYTVNYRE 118
G S Y S +++G P E P HPR+PYA SK AA + +
Sbjct: 94 R----GFSGTFLY-ISSGDVYGQVAEAALPIHEELIP-HPRNPYAVSKLAAESLCLQWGI 147
Query: 119 AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQS-KLFLGNLQASRDWGFAGD 177
G FNH P + ++FV R + R+K GLQ+ +L +G++ SRD+ D
Sbjct: 148 TEGWRVLVARPFNHIGPGQKDSFVIASAARQIARMKQGLQANRLEVGDIDVSRDFLDVQD 207
Query: 178 YVEAMWMMLQQ-EKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVD 236
+ A +L E Y V + + + E +E+ + + +V D R AE
Sbjct: 208 VLSAYLRLLSHGEAGAVYNVCSGQEQKIRELIELLADIAQVELE--IVQDPARMRRAEQR 265
Query: 237 NLKGDSSKARKVLGWKPRVGFEQLVKMMVDE 267
++G ++ GWKP + +Q ++ ++ +
Sbjct: 266 RVRGSHARLHDTTGWKPEITIKQSLRAILSD 296
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 122/276 (44%), Gaps = 22/276 (7%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-- 63
D+ D + + R L PD V N AA+SHV S E P G L LLEAVR +
Sbjct: 57 GDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWK 116
Query: 64 -IADSGRSHIRYYQAGSSEMFGSTPPPQ--SETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ D+ R R+ + E++G+ +ETTP+ P SPY+ASK A+ + Y
Sbjct: 117 ALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTY 176
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL N+ P +F + I + + G ++ G+ + RDW F D+ E
Sbjct: 177 GLPVLTTNCSNNYGPY---HFPEKLIPLVIAKALAGEPLPVY-GDGKQVRDWLFVSDHCE 232
Query: 181 AMWMMLQQEK-PDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKR-------YF-- 230
A+ +L + + + Y V ++ + +EV L + D + Y
Sbjct: 233 AIRTVLAKGRVGETYNVG---GNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTD 289
Query: 231 RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
RP D+SK + LGW+P FEQ + + VD
Sbjct: 290 RPGHDRRYAIDASKLKDELGWEPAYTFEQGIALTVD 325
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 22/276 (7%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-- 63
D+ D + + R L PD V N AA+SHV S E P G L LLEAVR +
Sbjct: 57 GDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWK 116
Query: 64 -IADSGRSHIRYYQAGSSEMFGSTPPPQ--SETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ D+ R R+ + E++G+ +ETTP+ P SPY+ASK A+ + Y
Sbjct: 117 ALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTY 176
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL N+ P +F + I + + G ++ G+ + RDW F D+ E
Sbjct: 177 GLPVLTTNCSNNYGPY---HFPEKLIPLVIAKALAGEPLPVY-GDGKQVRDWLFVSDHCE 232
Query: 181 AMWMMLQQEK-PDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKR-------YF-- 230
A+ +L + + + Y V ++ + +EV L + D + Y
Sbjct: 233 AIRTVLAKGRVGETYNVG---GNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTD 289
Query: 231 RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
RP D+SK + LGW+P FEQ + VD
Sbjct: 290 RPGHDRRYAIDASKLKDELGWEPAYTFEQGIAQTVD 325
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 33/289 (11%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
+AD+ D++ + R + PD V +LAA+SHV S P + G LLE R
Sbjct: 53 NFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVAR 112
Query: 62 ---SHIADSGRSHIRYYQAGSSEMFGSTPPPQ-----------SETTPFHPRSPYAASKC 107
S + + +++ R++ + E++G P P +ETT + P SPY+ASK
Sbjct: 113 KYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKA 172
Query: 108 AAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQ 167
++ +R YGL N+ P +F + I + G ++ G
Sbjct: 173 SSDHLVRAWRRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKPLPIY-GKGD 228
Query: 168 ASRDWGFAGDYVEAMWMMLQQEKP-DDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVID 226
RDW + D+ A+ M++ + K + Y + H ++ L+V F L D +V
Sbjct: 229 QIRDWLYVEDHARALHMVVTEGKAGETYNIG---GHNEKKNLDVVFTICDL--LDEIVPK 283
Query: 227 KRYF---------RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
+ RP D+ K + LGWKP FE ++ V+
Sbjct: 284 ATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 130/282 (46%), Gaps = 33/282 (11%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVAT---GALRLLEAVRS 62
D+ D + + + PD V +LAA+SHV S AD V T G LLE ++
Sbjct: 58 VDICDLNVIENIFEKYQPDAVMHLAAESHVDRSIS---GAADFVQTNIVGTYTLLEVAKN 114
Query: 63 H---IADSGRSHIRYYQAGSSEMFGS---TPPPQSETTPFHPRSPYAASKCAAHWYTVNY 116
+ + ++ ++ R++ + E++G + P +E +P+HP SPY+ASK A++ +
Sbjct: 115 YWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAW 174
Query: 117 REAYGL-FACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFA 175
YGL N+ + + E + I+ AV +G ++ G+ Q RDW F
Sbjct: 175 HRTYGLPVIITNSSNNYGAYQHAEKLIPLMISNAV----MGKPLPIY-GDGQQIRDWLFV 229
Query: 176 GDYVEAMWMMLQQEK-PDDYVVATEESHT-----------VEEFLEVAFGYVGLNWKDHV 223
D+V+A +++L + + ++Y + T +EE ++ ++D +
Sbjct: 230 EDHVQASYLVLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNHIKY-YEDLM 288
Query: 224 VIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
K RP D SK LGW+P++ FEQ ++ V
Sbjct: 289 TFVKD--RPGHDVRYSLDCSKIHAELGWQPQITFEQGLRQTV 328
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 33/288 (11%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
+AD+ DA ++ R PD V +LAA+SHV S P + G LLEA R+
Sbjct: 54 FEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 63 H---IADSGRSHIRYYQAGSSEMFGSTPPPQ-----------SETTPFHPRSPYAASKCA 108
+ + D + R++ + E++G P P +ETT + P SPY+ASK +
Sbjct: 114 YWSALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKAS 173
Query: 109 AHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQA 168
+ ++ YGL N+ P +F + I + G ++ G
Sbjct: 174 SDHLVRAWKRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKALPIY-GKGDQ 229
Query: 169 SRDWGFAGDYVEAMWMMLQQEKP-DDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 227
RDW + D+ A++ ++ + K + Y + H ++ ++V L D +V +
Sbjct: 230 IRDWLYVEDHARALYTVVTEGKAGETYNIG---GHNEKKNIDVVLTICDL--LDEIVPKE 284
Query: 228 RYF---------RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
+ + RP D+ K + LGWKP+ FE ++ V+
Sbjct: 285 KSYREQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGIRKTVE 332
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 33/288 (11%)
Query: 3 LHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 62
+AD+ DA ++ R PD V +LAA+SHV S P + G LLEA R+
Sbjct: 54 FEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 63 H---IADSGRSHIRYYQAGSSEMFGSTPPPQ-----------SETTPFHPRSPYAASKCA 108
+ + ++ R++ + E++G P P +ETT + P SPY+ASK +
Sbjct: 114 YWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKAS 173
Query: 109 AHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQA 168
+ ++ YGL N+ P +F + I + G ++ G
Sbjct: 174 SDHLVRAWKRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKALPIY-GKGDQ 229
Query: 169 SRDWGFAGDYVEAMWMMLQQEKP-DDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 227
RDW + D+ A++ ++ + K + Y + H ++ ++V L D +V +
Sbjct: 230 IRDWLYVEDHARALYTVVTEGKAGETYNIG---GHNEKKNIDVVLTICDL--LDEIVPKE 284
Query: 228 RYF---------RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
+ + RP D+ K + LGWKP+ FE ++ V+
Sbjct: 285 KSYREQITYVADRPGHDRRYAIDAEKIGRALGWKPQETFESGIRKTVE 332
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 20/278 (7%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR---S 62
AD+ D ++ +T PD V +LAA+SHV S D G +LE R S
Sbjct: 56 ADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWS 115
Query: 63 HIADSGRSHIRYYQAGSSEMFGSTPPPQS--ETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+++ + ++ + + E++GS E +P+ P SPY+ASK A+ + ++ Y
Sbjct: 116 NLSQNRKAFFKMLHVSTDEVYGSLGDRGQFEEVSPYDPSSPYSASKAASDHFATAWQRTY 175
Query: 121 GLFACNGILFNHESP-RRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
GL N+ P E + I A+ R + + G RDW + D+
Sbjct: 176 GLPVVISNCSNNYGPFHFPEKLIPLMILNALDRKPLPV-----YGTGSNIRDWLYVDDHA 230
Query: 180 EAMWMMLQQEKPDD--YVVATEESHTVEEFLEVAFGYVGLN-----WKDHVVIDKRYFRP 232
A+W+++++ +P + V E ++ + L+ + D + K RP
Sbjct: 231 RALWLIVREGRPGEKYNVGGRNELRNIDVVNRICLLLDELSPNASHYGDLITFVKD--RP 288
Query: 233 AEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIE 270
D++K LGWK + F+ ++ V+ +E
Sbjct: 289 GHDARYAIDATKLETELGWKAQENFDTGIRKTVEWYLE 326
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 33/285 (11%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-- 63
AD+ DA + D V +LAA+SHV S P + G LLEA R++
Sbjct: 57 ADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWS 116
Query: 64 -IADSGRSHIRYYQAGSSEMFGSTPPPQ-----------SETTPFHPRSPYAASKCAAHW 111
+ D + + R++ + E++G P P +ETT + P SPY+ASK ++
Sbjct: 117 GLDDEKKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDH 176
Query: 112 YTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRD 171
++ YGL N+ P +F + I + G ++ G RD
Sbjct: 177 LVRAWKRTYGLPTIVSNCSNNYGPY---HFPEKLIPLVILNALEGKALPIY-GKGDQIRD 232
Query: 172 WGFAGDYVEAMWMMLQQEKP-DDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYF 230
W + D+ A++ ++ + K + Y + H ++ ++V F L D +V ++ +
Sbjct: 233 WLYVEDHARALYTVVTEGKAGETYNIG---GHNEKKNIDVVFTICDL--LDEIVPKEKSY 287
Query: 231 ---------RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
RP D+ K + LGWKP+ FE ++ V+
Sbjct: 288 REQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGIRKTVE 332
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 118/279 (42%), Gaps = 29/279 (10%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D + L R PD V +LAA+SHV S + P + G LLEA R++
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ + +S R++ + E++G ST +ETTP+ P SPY+ASK ++ + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL L + S G K+ + + +S GN Q RDW + D+
Sbjct: 179 GL----PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHAR 234
Query: 181 AMWMMLQQEK-PDDYVVATEES-------HTVEEFLEVAFGYVGLNWKDHVVIDKRYF-- 230
A++ + K + Y + T+ E LE + N K H V R
Sbjct: 235 ALYCVATTGKVGETYNIGGHNERKNLDVVETICELLE----ELAPN-KPHGVAHYRDLIT 289
Query: 231 ----RPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
RP D+SK + LGW P+ FE ++ V
Sbjct: 290 FVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTV 328
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 48/291 (16%)
Query: 24 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMF 83
D + + AA+SH S + P G LLEA R + IR++ + E++
Sbjct: 77 DAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKY-------DIRFHHVSTDEVY 129
Query: 84 GSTP-----PPQSE--------TTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILF 130
G P P E T ++P SPY+++K A+ + ++G+ A
Sbjct: 130 GDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCS 189
Query: 131 NHESP-RRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQE 189
N+ P + E F+ R+IT I G++ KL+ G + RDW D+ +W +L +
Sbjct: 190 NNYGPYQHIEKFIPRQITN----ILSGIKPKLY-GEGKNVRDWIHTNDHSTGVWAILTKG 244
Query: 190 K-PDDYVVATEESHTVEEFLEVAFGYVGL--NWKDHVVI----DKRYFRPAEVDNLKGDS 242
+ + Y++ + +E LE+ + N DHV D RY DS
Sbjct: 245 RIGETYLIGADGEKNNKEVLELILEKMSQPKNAYDHVTDRAGHDLRYAI---------DS 295
Query: 243 SKARKVLGWKPRV-----GFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQ 288
+K R+ LGWKP+ G E +K + + + K EK V+A Y Q+
Sbjct: 296 TKLREELGWKPQFTNFEEGLEDTIKWYTEHE-DWWKAEKEAVEANYAKTQK 345
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 113/269 (42%), Gaps = 25/269 (9%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
AD+ DA L L P+ +++LAAQ V S + P + A V G +RL EA R
Sbjct: 55 ADIVDAD-LTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARL--- 110
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP--PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLF 123
+G + + +G S ++G TPP P SE P +P SPYAA K A Y YR Y L
Sbjct: 111 -AGVRKVVHTSSGGS-VYG-TPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLD 167
Query: 124 ACNGILFNHESPRR---GENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
+ N PR+ GE V + A + G +K+F
Sbjct: 168 CSHIAPANVYGPRQDPHGEAGVVAIFSEA---LLAGRTTKIFGDGSDTRDYVFVDDVVDA 224
Query: 181 AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKG 240
+ + V T + E G VG D+ F P + +L+
Sbjct: 225 FVRAGGPAGGGQRFNVGTGVETSTRELHTAIAGAVG-------APDEPEFHPPRLGDLRR 277
Query: 241 ---DSSKARKVLGWKPRVGFEQLVKMMVD 266
D+++AR+VLGW+P+V + + V+
Sbjct: 278 SRLDNTRAREVLGWQPQVALAEGIAKTVE 306
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 24/273 (8%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
++L D+TDA+ + + D V + AA++HV + P+ G +LEAV
Sbjct: 51 IRLVQGDITDAALVGDLVAE--SDAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAV 108
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGS----TPPPQSETTPFHPRSPYAASKCAAHWYTVNY 116
R H ++R + + E++G P +ETTP++P SPY+++K AA +
Sbjct: 109 RRH-------NVRLHHVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRAW 161
Query: 117 REAYGLFACNGILFNHESP-RRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFA 175
+YG+ A N+ P + E F+ R+IT + G + KL+ G RDW
Sbjct: 162 VRSYGVRATISNCSNNYGPYQHVEKFIPRQIT----NVLTGRRPKLY-GAGANVRDWIHV 216
Query: 176 GDYVEAMWMMLQQEKPD-DYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAE 234
D+ A+W +L Y++ E + +G + D D R
Sbjct: 217 DDHNSAVWRILTDGTIGRTYLIGAECERNNLTVMRTILKLMGRDPDD---FDHVTDRAGH 273
Query: 235 VDNLKGDSSKARKVLGWKPR-VGFEQLVKMMVD 266
D S + LGW P+ FE + +D
Sbjct: 274 DLRYAIDPSTLQDELGWAPKHTDFEAGLTDTID 306
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 19/241 (7%)
Query: 30 AAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMFGSTPPP 89
AAQ +V S E P Y D+ G + +LE +R + D I + +G + P
Sbjct: 72 AAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDK----IVFASSGGAVYGEPNYLP 127
Query: 90 QSETTPFHPRSPYAASKCAAHWYTVNYREAYG----LFACNGILFNHESPRRGENFVTRK 145
E P +P SPY SK Y Y YG + + + + P+ ++
Sbjct: 128 VDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIF 187
Query: 146 ITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVE 205
I + + QS + G+ +RD+ + GD +A M L K + + T + +V
Sbjct: 188 IDKMLKN-----QSPIIFGDGNQTRDFVYVGDVAKANLMALNW-KNEIVNIGTGKETSVN 241
Query: 206 EFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
E ++ +G ++ + DK R EV + D KA LGWKP + ++ +K +V
Sbjct: 242 ELFDIIKHEIG--FRGEAIYDKP--REGEVYRIYLDIKKAES-LGWKPEIDLKEGIKRVV 296
Query: 266 D 266
+
Sbjct: 297 N 297
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 32/247 (12%)
Query: 24 DEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSE 81
D V + AA+SHV ++S P T +V+ G RL EAV A + + E
Sbjct: 76 DGVIHFAAESHVDRSISQAEPFITTNVM--GTYRLAEAVLKGKAK------KLIHISTDE 127
Query: 82 MFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG 138
++G + P +ETTP P +PY+ASK ++ ++Y + + L A N+ P +
Sbjct: 128 VYGDLKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRCSNNYGPYQH 187
Query: 139 ENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDD-YVVA 197
+ I R K GL L+ LQ RDW FA D+ A+ ++L++ + Y +
Sbjct: 188 SEKMIPTIIR---HAKQGLPVPLYGDGLQI-RDWLFAEDHCRAIKLILEKGTDGEVYNIG 243
Query: 198 TEESHTVEEFLEVAFGYVGL-----NWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWK 252
T +E V ++G + +D D+RY ++SK + LGW+
Sbjct: 244 GGNERTNKELASVILKHLGCEELFAHVEDRKGHDRRY---------AINASKLKNELGWR 294
Query: 253 PRVGFEQ 259
V FE+
Sbjct: 295 QEVTFEE 301
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 29/279 (10%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D + L R PD V +LAA+SHV + G LLEA R++
Sbjct: 64 DICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQ 123
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ R R++ + E++G T +ETTP+ P SPY+ASK AA ++ Y
Sbjct: 124 MPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLVRAWQRTY 183
Query: 121 GLFACNGILFNHESPRR-GENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYV 179
L + N+ PR+ E + I A+ + + G+ RDW F D+
Sbjct: 184 RLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPV-----YGDGAQIRDWLFVEDHA 238
Query: 180 EAMWMMLQQ-------------EKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVID 226
A++ ++ + EK + VV T + E E G ++D +
Sbjct: 239 RALYQVVTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVA--RYEDLITFV 296
Query: 227 KRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
+ RP D++K R+ LGW P FE ++ V
Sbjct: 297 QD--RPGHDARYAVDAAKIRRDLGWLPLETFESGLRKTV 333
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
++L D+TDA + + + D V + AA+SHV + + P+ G +LEAV
Sbjct: 51 IRLVQGDITDAELVSQLV--AESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAV 108
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPPPQ----SETTPFHPRSPYAASKCAAHWYTVNY 116
R H +R + + E++G +E+TP++P SPY+A+K A +
Sbjct: 109 RRH-------GVRLHHISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRAW 161
Query: 117 REAYGLFACNGILFNHESP-RRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFA 175
+YG+ A N+ P + E F+ R+IT + G + KL+ G RDW
Sbjct: 162 VRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVL----TGRRPKLY-GAGANVRDWIHV 216
Query: 176 GDYVEAMWMMLQQEK 190
D+ A+ +L + +
Sbjct: 217 DDHNSAVRRILDRGR 231
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 27/278 (9%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D + L R PD V +LAA+SHV S G LLEA R++
Sbjct: 59 DICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQ 118
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ R++ + E++G T +ET P+ P SPY+ASK ++ + Y
Sbjct: 119 MPSEKHEAFRFHHISTDEVYGDLSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL N+ P +F + I + G ++ +Q RDW F D+
Sbjct: 179 GLPTIVTNCSNNYGPY---HFPEKLIPLMILNALDGKPLPVYGDGMQI-RDWLFVEDHAR 234
Query: 181 AMWMMLQQ-------------EKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 227
A++ ++ + EK + VV T + E E G ++D + +
Sbjct: 235 ALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVA--RYEDLITFVQ 292
Query: 228 RYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
RP D++K R+ LGW+P FE ++ V
Sbjct: 293 D--RPGHDARYAVDTAKIRRDLGWQPLETFESGLRKTV 328
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 6 ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 65
AD+ A L L+ P+ V++LAAQ V S P + A V G +RL EA R
Sbjct: 55 ADIVTAD-LHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQ--- 110
Query: 66 DSGRSHIRYYQAGSSEMFGSTPP--PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLF 123
+G I + +G S ++G TPP P ET P P SPYAA K A Y +R YGL
Sbjct: 111 -TGVRKIVHTSSGGS-IYG-TPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLD 167
Query: 124 ACNGILFNHESPRR 137
+ N PR+
Sbjct: 168 CSHIAPANVYGPRQ 181
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 27/278 (9%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D + L R PD V +LAA+SHV S G LLEA R++
Sbjct: 59 DICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQ 118
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 120
+ R++ + E++G T +ET P+ P SPY+ASK ++ + Y
Sbjct: 119 MPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 121 GLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVE 180
GL N+ P +F + I + G ++ +Q RDW F D+
Sbjct: 179 GLPTIVTNCSNNYGPY---HFPEKLIPLMILNALDGKPLPVYGDGMQI-RDWLFVEDHAR 234
Query: 181 AMWMMLQQ-------------EKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 227
A++ ++ + EK + VV T + E E G ++D + +
Sbjct: 235 ALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVA--RYEDLITFVQ 292
Query: 228 RYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMV 265
RP D++K R+ LGW P FE ++ V
Sbjct: 293 D--RPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTV 328
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
Query: 5 YADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHI 64
+ D+ + + + R + +PD ++LA Q + S + P ++ G L LLEAVR +
Sbjct: 55 HGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN 114
Query: 65 ADSG------------RSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWY 112
++ +Y + + P E+T SPY SK AA Y
Sbjct: 115 SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQY 174
Query: 113 TVNYREAYGLFACNGILFNHESPRRGENFVT 143
++Y +GL N ++F H S G F T
Sbjct: 175 MLDYARIFGL---NTVVFRHSSMYGGRQFAT 202
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 48/286 (16%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
K D+ D+ ++ +T D V + AAQ+HV +SF V +
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSF---------VRAFEFTYVNVYG 121
Query: 62 SHIADSGRSHIR---YYQAGSSEMFGSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYR 117
+H+ S R + + E++G + + E++P P +PYA+SK AA + +Y
Sbjct: 122 THVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYW 181
Query: 118 EAYGLFACNGILFNHESPRRG-ENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAG 176
E Y ++ S G + + I + + ++ + + LQ +R++ +A
Sbjct: 182 EQYKF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQ-TRNFLYAT 236
Query: 177 DYVEAMWMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVGL-----------NWKDHV- 223
D VEA +L++ KP + Y + T +V L++A + L NW D+V
Sbjct: 237 DVVEAFLTVLKKGKPGEIYNIGTNFEMSV---LQLAKELIQLIKETNSESEMENWVDYVD 293
Query: 224 ---VIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
D RY P + + + G LGW+P+V +++ +K ++
Sbjct: 294 DRPTNDMRY--PMKSEKIHG--------LGWRPKVPWKEGIKKTIE 329
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 24 DEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSE 81
D V + AA++HV +V P +++V T L L A+R HI R+ + E
Sbjct: 79 DTVAHFAAETHVDRSVVASGPFVASNLVGTQVL-LDAALRHHIG-------RFLHVSTDE 130
Query: 82 MFGSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGEN 140
++GS +E P P SPYAASK + + Y + +G+ N+ PR+
Sbjct: 131 VYGSIDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQ--- 187
Query: 141 FVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDD-YVVATE 199
F + I V R+ GL ++ G+ + RDW D+ + + L + + Y +
Sbjct: 188 FPEKMIPLFVTRLLDGLDVPVY-GDGRNIRDWLHVSDHCRGLALALGAGRAGEVYHIGGG 246
Query: 200 ESHTVEEFLEVAFGYVG---------LNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLG 250
T E E+ G + K H D+RY D SK LG
Sbjct: 247 WEATNLELTEILLEACGAPASRISFVTDRKGH---DRRYSL---------DYSKIAGELG 294
Query: 251 WKPRVGFEQLVKMMV 265
++PRV F + V
Sbjct: 295 YRPRVDFTDGIAETV 309
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 122/283 (43%), Gaps = 42/283 (14%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
K D+ D+ ++ +T D V + AAQ+HV +SF V +
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSF---------VRAFEFTYVNVYG 121
Query: 62 SHIADSGRSHIR---YYQAGSSEMFGSTPPPQ-SETTPFHPRSPYAASKCAAHWYTVNYR 117
+H+ S R + + E++G + + E++P P +PYA+SK AA + +Y
Sbjct: 122 THVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYW 181
Query: 118 EAYGLFACNGILFNHESPRRG-ENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAG 176
E Y ++ S G + + I + + ++ + + LQ +R++ +A
Sbjct: 182 EQYKF----PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQ-TRNFLYAT 236
Query: 177 DYVEAMWMMLQQEKPDD-YVVATEESHTVEEFLEVAFGYVG--------LNWKDHV---- 223
D VEA +L++ KP + Y + T +V + + + NW D+V
Sbjct: 237 DVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRP 296
Query: 224 VIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVD 266
D RY P + + + G LGW+P+V +++ +K ++
Sbjct: 297 TNDMRY--PMKSEKIHG--------LGWRPKVPWKEGIKKTIE 329
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 24/283 (8%)
Query: 1 MKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 60
M + L D + + R L D V++LAAQ+ V V+ P T + G +LEA
Sbjct: 55 MNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEAC 114
Query: 61 RSHIADSGRSHIRYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
R H R A S + +G P E P + PY SK A + Y
Sbjct: 115 RKHPLIK-----RVIVASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCADLISHTYFHT 169
Query: 120 YGLFAC---NGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAG 176
YGL C G L+ G + +I ++ + ++ + RD+ +
Sbjct: 170 YGLPVCITRCGNLYG------GGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIE 223
Query: 177 DYVEAMWMMLQQEKPDD-----YVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFR 231
D V+A ++ ++ + ++ + + E TV E +E + N K V+
Sbjct: 224 DAVQAYLLLAEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQG---- 279
Query: 232 PAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKR 274
E+ + + KARK+L W P ++ ++ ++ E K+
Sbjct: 280 SNEIKHQYLSAEKARKLLNWTPAYTIDEGLEKTIEWYTEFFKK 322
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 108/271 (39%), Gaps = 29/271 (10%)
Query: 2 KLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
K + D+ D + + L D V + AA S V S + P D TG + LL+A+
Sbjct: 46 KFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMN 105
Query: 62 SHIADSGRSHIRYYQAGSSEMFGSTPP--PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
++++Y SS P P +E TP +P +PY +K +A
Sbjct: 106 D-------ANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKA 158
Query: 120 YGLFACNGILFNHESPRR----GENFV--TRKITRAVGRIKIGLQSKLFLGNLQASRDWG 173
G+ FN GE+ T I + G G+ ++D
Sbjct: 159 DGIKYTALRYFNVAGASSDGSIGEDHAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGT 218
Query: 174 FAGDYVE----------AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHV 223
DYV+ A+ M++ K D + + T ++ E LE A G++
Sbjct: 219 NVRDYVQVEDLIDAHILALKHMMKTNKSDVFNLGTAHGYSNLEILESAKKVTGIDIP--Y 276
Query: 224 VIDKRYFRPAEVDNLKGDSSKARKVLGWKPR 254
+ R R + D+L DS+KAR VLGWKP+
Sbjct: 277 TMGPR--RGGDPDSLVADSTKARTVLGWKPK 305
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 24 DEVYNLAAQSHVAVSFEIPD--YTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSE 81
D V + AA+S V S E PD + ++V T L LL+A++ R+++R S+
Sbjct: 66 DAVLHFAARSLVGESVEKPDEYWQHNMVTT--LALLDAMK-------RNNVRNIVFSSTA 116
Query: 82 MFGSTPP--PQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR-- 137
P P +E P HP +PY A+K + + +Y AYG A + FN
Sbjct: 117 ATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYFNVAGAYGLV 176
Query: 138 GENF-VTRKITRAVGRIKIGLQSKLFL-------GNLQASRDWGFAGDYVEAMWMMLQQE 189
GEN + + V ++ +G + K+F+ + RD+ D +A + LQ
Sbjct: 177 GENREIETHLIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQSN 236
Query: 190 KPDDYVV---ATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKAR 246
+ + + E ++V++ ++ G + V +R PA L S+KA+
Sbjct: 237 VEGSHRIFNLGSGEGYSVKQVIDTCREVTG-HLIPAEVAPRRAGDPAV---LIASSAKAQ 292
Query: 247 KVLGWKPR 254
LGWKP+
Sbjct: 293 SELGWKPQ 300
>sp|P35675|YGAE_ERWAM Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia
amylovora PE=3 SV=1
Length = 164
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 7 DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH--- 63
D+ D+ SL+R + PD V +LAA+SHV S + P + G LLEA R +
Sbjct: 58 DICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDGPAAFIETNMIGTYVLLEAARMYWLG 117
Query: 64 IADSGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKC 107
+ + R + + E+FG T +E T + P SPY+ASK
Sbjct: 118 LPVERKEAFRLHHISTDEVFGDLHGTEDLFTEQTAYAPSSPYSASKA 164
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 39/284 (13%)
Query: 3 LHYADLTDASSLRR-WLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVR 61
+ DL+D +R+ + + D V + AA S V S E P D G ++LLE +
Sbjct: 48 FYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMN 107
Query: 62 SHIADSGRSHIRYYQAGSSEMFGSTPP--PQSETTPFHPRSPYAASKCAAHWYTVNYREA 119
++Y S+ P P ETTP +P +PY SK +A
Sbjct: 108 -------ECGVKYIVFSSTAATYGIPEEIPILETTPQNPINPYGESKLMMETIMKWSDQA 160
Query: 120 YGLFACNGILFNHESPRRGENFVTRKI-TRA-------VGRIKIGLQSKLFL-GNLQASR 170
YG+ FN G N + R + TR+ + ++ G++ K+ + G+ +
Sbjct: 161 YGIKYVPLRYFN----VAGANLMVRLVRTRSETHLLPIILQVAQGVREKIMIFGDDYNTP 216
Query: 171 DWGFAGDYVE----------AMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWK 220
D DYV A+ + + + + + + + + LE A G
Sbjct: 217 DGTNVRDYVHPFDLADAHLLAVEYLRKGNESTAFNLGSSTGFSNLQILEAARKVTG---- 272
Query: 221 DHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMM 264
+ +K RP + D L S KAR VLGWKP+ F+ + K++
Sbjct: 273 KEIPAEKADRRPGDPDILIASSEKARTVLGWKPQ--FDNIEKII 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,570,300
Number of Sequences: 539616
Number of extensions: 4564746
Number of successful extensions: 11524
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11332
Number of HSP's gapped (non-prelim): 118
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)