BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022915
MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVS
SSSLSLFLNSDTTQSRVLSHDHRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFI
YSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDL
PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDY
ESERIRIREPLIHQQPIAHSDIWSSRIREKVSCLNLSVGQISSDSLCCKI

High Scoring Gene Products

Symbol, full name Information P value
AT2G20230 protein from Arabidopsis thaliana 8.7e-67
AT2G20740 protein from Arabidopsis thaliana 1.6e-30
TOM2A
tobamovirus multiplication 2A
protein from Arabidopsis thaliana 7.4e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022915
        (290 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2038997 - symbol:AT2G20230 species:3702 "Arabi...   528  8.7e-67   2
TAIR|locus:2051348 - symbol:AT2G20740 "AT2G20740" species...   268  1.6e-30   2
TAIR|locus:2033718 - symbol:TOM2A "tobamovirus multiplica...   265  7.4e-27   2


>TAIR|locus:2038997 [details] [associations]
            symbol:AT2G20230 species:3702 "Arabidopsis thaliana"
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0031347 "regulation of defense response"
            evidence=RCA] InterPro:IPR000301 InterPro:IPR018499 Pfam:PF00335
            PRINTS:PR00259 PROSITE:PS00421 GO:GO:0016021 GO:GO:0005774
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006569
            UniGene:At.13955 EMBL:AY054570 EMBL:AY064662 EMBL:AY088475
            IPI:IPI00520899 PIR:F84586 RefSeq:NP_565468.1 UniGene:At.48496
            PaxDb:Q93XY5 PRIDE:Q93XY5 EnsemblPlants:AT2G20230.1 GeneID:816542
            KEGG:ath:AT2G20230 TAIR:At2g20230 eggNOG:NOG310766
            HOGENOM:HOG000029054 InParanoid:Q93XY5 OMA:CKWVGIT PhylomeDB:Q93XY5
            ProtClustDB:CLSN2685757 Genevestigator:Q93XY5 Uniprot:Q93XY5
        Length = 270

 Score = 528 (190.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 111/195 (56%), Positives = 131/195 (67%)

Query:    91 PLDVMVSGFDDVSG--LGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCC 148
             P+D + S     +G   GF+  S +LPAPWFIYSFM VGILVC +  IG IAAEAI+GCC
Sbjct:    70 PIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCC 129

Query:   149 LCFYAILKIILFLLEAALVAFIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGIT 208
             LCFY+ILK +L LLEAALVA+IAIDR WEKDLP+DPTGEL SLR+FIE+N+DICKWVGI 
Sbjct:   130 LCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIA 189

Query:   209 XXXXXXXXXXXXXXXXXMVSTRRTNFDEEDDYESERIRIREPLI----HQQPIAHSDI-- 262
                              MVST +   DEE+D E+ R R  +PL+    +Q P   S I  
Sbjct:   190 VVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDENPRSRTWDPLLGPQGNQAPAGSSKIEN 249

Query:   263 WSSRIREKVSCLNLS 277
             WSSRIREK   LN S
Sbjct:   250 WSSRIREKYG-LNQS 263

 Score = 169 (64.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query:     1 MQRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHH 42
             M+RNCCH+SFA  LK LNF+Q FIGVSII+YSIWML +++ H
Sbjct:     1 MRRNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRH 42


>TAIR|locus:2051348 [details] [associations]
            symbol:AT2G20740 "AT2G20740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR018499 Pfam:PF00335 PROSITE:PS00421 GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006234
            HOGENOM:HOG000029054 EMBL:AF462842 EMBL:AY054217 EMBL:AY097350
            EMBL:AK175553 EMBL:AK176086 IPI:IPI00521463 IPI:IPI00533713
            IPI:IPI00543284 PIR:G84592 RefSeq:NP_179667.2 RefSeq:NP_973493.1
            RefSeq:NP_973494.1 UniGene:At.23632 UniGene:At.71303 IntAct:Q940P5
            PRIDE:Q940P5 EnsemblPlants:AT2G20740.1 GeneID:816603
            KEGG:ath:AT2G20740 TAIR:At2g20740 eggNOG:NOG321653
            InParanoid:Q940P5 OMA:ICKWIGL PhylomeDB:Q940P5
            ProtClustDB:CLSN2690819 Genevestigator:Q940P5 Uniprot:Q940P5
        Length = 221

 Score = 268 (99.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 52/167 (31%), Positives = 85/167 (50%)

Query:   109 FNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
             F   + P PWFIYSF+G+G ++C +   G IAAE ++GCCL  Y    ++L ++E  +VA
Sbjct:    47 FADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVA 106

Query:   169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITXXXXXXXXXXXXXXXXXMVS 228
              I ++R W+KD P DP+G       FIE N  ICKW+G++                 +  
Sbjct:   107 DIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGP 166

Query:   229 TRRTNFDEEDDYESERIRIRE------PLIHQQPI--AHSDIWSSRI 267
                 ++D +D+Y    + + +      P +  +P+  A    W+ R+
Sbjct:   167 HPHRHYDSDDEYNVSTVALLQDARQPPPYVVGEPMYGAKPGAWTVRL 213

 Score = 84 (34.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 12/27 (44%), Positives = 22/27 (81%)

Query:    13 ILKFLNFLQGFIGVSIILYSIWMLDQW 39
             +LK +N L G +G+++ILY++W++ QW
Sbjct:    12 MLKLVNSLIGMVGIAMILYAVWLIRQW 38


>TAIR|locus:2033718 [details] [associations]
            symbol:TOM2A "tobamovirus multiplication 2A" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016020 "membrane"
            evidence=ISS] [GO:0046786 "viral replication complex formation and
            maintenance" evidence=IMP] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] InterPro:IPR018499 Pfam:PF00335
            GO:GO:0016021 EMBL:CP002684 GO:GO:0009506 GO:GO:0005794
            GO:GO:0005773 GO:GO:0016020 HOGENOM:HOG000029054 GO:GO:0046786
            EMBL:AF334723 EMBL:AF385687 EMBL:AY088560 EMBL:AB085684
            IPI:IPI00522211 RefSeq:NP_001031127.1 RefSeq:NP_564399.1
            RefSeq:NP_973952.1 UniGene:At.15525 IntAct:Q9C5W7 STRING:Q9C5W7
            PRIDE:Q9C5W7 ProMEX:Q9C5W7 EnsemblPlants:AT1G32400.1
            EnsemblPlants:AT1G32400.2 EnsemblPlants:AT1G32400.3 GeneID:840133
            KEGG:ath:AT1G32400 TAIR:At1g32400 InParanoid:Q9C5W7 OMA:TSEFTYN
            PhylomeDB:Q9C5W7 ProtClustDB:CLSN2688198 ArrayExpress:Q9C5W7
            Genevestigator:Q9C5W7 Uniprot:Q9C5W7
        Length = 280

 Score = 265 (98.3 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 62/179 (34%), Positives = 93/179 (51%)

Query:   110 NSFE-LPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168
             N F+ LP  WFIY F+G+G+ +  I+  GC+   + S CCL  Y++L I+L L+E    A
Sbjct:    71 NIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAA 130

Query:   169 FIAIDRRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITXXXXXXXXXXXXXXXXXMVS 228
             FI  D  W  +LP D TG  D++ +F+ +N  I +WV +                  MV 
Sbjct:   131 FIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVAL----GAVVFEALLFLLALMVR 186

Query:   229 TRRT--NFDEEDDYESERIRIREPLIHQQ-------PIA--------HSDIWSSRIREK 270
                T   +D +D+Y + R +IR+P I++Q       P+A         SD WS+R+REK
Sbjct:   187 AANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSARMREK 245

 Score = 52 (23.4 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query:     6 CHISFAFILKFLNFLQGFIGVSIILYSIWMLDQW 39
             C      +LK LNFL    G+ +I Y I++  ++
Sbjct:     3 CRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEY 36


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.142   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      290       247   0.00078  114 3  11 22  0.48    32
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  215 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.85u 0.11s 19.96t   Elapsed:  00:00:01
  Total cpu time:  19.86u 0.11s 19.97t   Elapsed:  00:00:01
  Start:  Sat May 11 02:08:57 2013   End:  Sat May 11 02:08:58 2013

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