Query 022915
Match_columns 290
No_of_seqs 225 out of 1260
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 1.1E-23 2.4E-28 190.4 15.7 164 2-231 1-232 (237)
2 PF00335 Tetraspannin: Tetrasp 99.6 8.7E-17 1.9E-21 138.5 -0.3 151 9-225 1-219 (221)
3 KOG4433 Tweety transmembrane/c 94.0 0.66 1.4E-05 46.9 11.3 38 125-162 215-252 (526)
4 cd03164 CD53_like_LEL Tetraspa 89.3 0.25 5.3E-06 37.5 2.0 22 182-203 65-86 (86)
5 PF04906 Tweety: Tweety; Inte 89.0 1.2 2.5E-05 44.3 6.9 31 128-158 194-224 (406)
6 PF15345 TMEM51: Transmembrane 75.1 6.1 0.00013 36.6 5.3 26 121-146 62-87 (233)
7 PF07086 DUF1352: Protein of u 73.3 30 0.00065 31.0 9.1 42 130-171 81-122 (186)
8 cd07912 Tweety_N N-terminal do 67.7 15 0.00033 36.8 6.6 39 124-162 213-251 (418)
9 PF04103 CD20: CD20-like famil 67.3 1.9 4.1E-05 35.5 0.2 37 126-162 37-73 (150)
10 PF10177 DUF2371: Uncharacteri 65.6 13 0.00028 32.0 4.9 27 10-36 38-64 (141)
11 cd03158 penumbra_like_LEL Tetr 62.5 5.1 0.00011 32.2 1.8 18 182-199 102-119 (119)
12 cd03163 TM4SF8_like_LEL Tetras 60.7 4.8 0.0001 31.3 1.4 18 182-199 87-104 (105)
13 cd03154 TM4SF3_like_LEL Tetras 60.6 6.2 0.00013 30.4 2.0 18 182-199 83-100 (100)
14 cd03166 CD63_LEL Tetraspanin, 60.0 4.6 0.0001 31.1 1.1 18 182-199 82-99 (99)
15 cd03161 TM4SF2_6_like_LEL Tetr 59.4 5.9 0.00013 30.6 1.7 18 182-199 87-104 (104)
16 cd03167 oculospanin_like_LEL T 59.0 6.1 0.00013 32.0 1.7 18 182-199 103-120 (120)
17 PF04749 PLAC8: PLAC8 family; 57.8 6.5 0.00014 30.6 1.6 18 261-278 68-85 (106)
18 TIGR01571 A_thal_Cys_rich unch 56.2 7.7 0.00017 31.1 1.8 17 262-278 65-81 (104)
19 cd03160 CD37_CD82_like_LEL Tet 56.0 4.8 0.0001 32.1 0.6 18 182-199 99-116 (117)
20 PF15050 SCIMP: SCIMP protein 55.9 31 0.00067 29.1 5.3 33 193-226 2-34 (133)
21 cd03159 TM4SF9_like_LEL Tetras 53.8 7 0.00015 31.4 1.3 18 182-199 104-121 (121)
22 PRK10263 DNA translocase FtsK; 53.7 2.4E+02 0.0051 32.7 13.2 16 120-135 75-90 (1355)
23 cd03165 NET-5_like_LEL Tetrasp 53.0 6.4 0.00014 30.1 0.9 18 182-199 81-98 (98)
24 PRK12585 putative monovalent c 49.0 1.5E+02 0.0032 26.9 8.9 28 14-41 5-32 (197)
25 PF13903 Claudin_2: PMP-22/EMP 48.3 1E+02 0.0022 25.4 7.6 30 122-151 73-103 (172)
26 cd03155 CD151_like_LEL Tetrasp 48.0 14 0.0003 28.9 2.1 18 182-199 91-110 (110)
27 cd03156 uroplakin_I_like_LEL T 47.9 11 0.00024 29.3 1.5 18 182-199 97-114 (114)
28 cd03152 CD9_LEL Tetraspanin, e 47.8 12 0.00025 28.2 1.6 18 182-199 67-84 (84)
29 cd03127 tetraspanin_LEL Tetras 45.5 12 0.00026 27.5 1.3 18 182-199 73-90 (90)
30 PF14995 TMEM107: Transmembran 44.4 79 0.0017 26.4 6.2 64 158-224 7-72 (124)
31 PF06724 DUF1206: Domain of Un 42.1 27 0.00059 25.8 2.8 21 18-38 47-67 (73)
32 PF12273 RCR: Chitin synthesis 39.9 23 0.0005 29.3 2.3 24 203-226 1-24 (130)
33 PF05915 DUF872: Eukaryotic pr 39.7 72 0.0016 26.3 5.2 24 16-39 45-68 (115)
34 cd03162 peripherin_like_LEL Te 34.9 19 0.00042 30.8 1.1 23 176-198 120-142 (143)
35 PF05835 Synaphin: Synaphin pr 34.3 20 0.00044 30.7 1.1 18 261-278 62-79 (139)
36 PF01601 Corona_S2: Coronaviru 33.9 14 0.00029 38.7 0.0 16 115-130 545-560 (610)
37 PF10176 DUF2370: Protein of u 33.3 41 0.00089 31.2 3.0 34 114-147 191-224 (233)
38 cd02432 Nodulin-21_like_1 Nodu 31.8 76 0.0017 28.9 4.5 20 259-278 114-133 (218)
39 cd02434 Nodulin-21_like_3 Nodu 31.2 60 0.0013 29.6 3.8 21 257-277 108-129 (225)
40 PF04156 IncA: IncA protein; 31.0 69 0.0015 27.7 4.0 23 15-37 5-27 (191)
41 PF09323 DUF1980: Domain of un 29.1 1.6E+02 0.0034 25.7 5.9 45 117-161 29-86 (182)
42 KOG1362 Choline transporter-li 28.8 7.1E+02 0.015 26.2 11.6 43 185-227 210-252 (577)
43 PF01988 VIT1: VIT family; In 28.2 98 0.0021 27.7 4.5 29 198-226 29-57 (213)
44 PF05640 NKAIN: Na,K-Atpase In 27.0 1.9E+02 0.0042 26.3 6.1 46 122-167 35-80 (200)
45 KOG3950 Gamma/delta sarcoglyca 26.8 72 0.0016 30.1 3.4 28 145-172 33-60 (292)
46 cd03157 TM4SF12_like_LEL Tetra 25.7 45 0.00098 26.6 1.7 16 182-197 86-101 (103)
47 PF05478 Prominin: Prominin; 22.5 47 0.001 35.9 1.6 23 149-171 139-161 (806)
48 PF04156 IncA: IncA protein; 22.5 2.8E+02 0.0062 23.8 6.3 21 122-142 10-30 (191)
49 PRK06654 fliL flagellar basal 22.1 1.3E+02 0.0028 26.9 4.0 45 199-243 31-78 (181)
50 KOG1314 DHHC-type Zn-finger pr 21.9 5.6E+02 0.012 25.6 8.6 63 204-271 192-260 (414)
51 KOG4694 Predicted membrane pro 21.7 5.6E+02 0.012 22.6 9.0 57 121-181 52-114 (174)
52 TIGR01167 LPXTG_anchor LPXTG-m 21.5 1.1E+02 0.0024 18.9 2.6 22 19-40 11-32 (34)
53 PF10731 Anophelin: Thrombin i 20.7 1.3E+02 0.0029 22.3 3.1 27 213-239 9-38 (65)
54 PF13908 Shisa: Wnt and FGF in 20.6 46 0.001 28.9 0.9 27 122-148 78-104 (179)
55 PF11297 DUF3098: Protein of u 20.6 1.1E+02 0.0023 23.3 2.7 24 17-40 6-29 (69)
56 PF07423 DUF1510: Protein of u 20.0 93 0.002 28.5 2.8 26 13-38 12-37 (217)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=190.38 Aligned_cols=164 Identities=25% Similarity=0.428 Sum_probs=134.5
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 022915 2 QRNCCHISFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHD 81 (290)
Q Consensus 2 ~~~~C~~~lk~lL~~lN~l~~l~Gl~lI~~Giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (290)
..++|..|+|++++++|+++|++|++++++|+|++.+......
T Consensus 1 ~~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~------------------------------------- 43 (237)
T KOG3882|consen 1 MMSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSS------------------------------------- 43 (237)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhh-------------------------------------
Confidence 0678999999999999999999999999999999877654111
Q ss_pred cccccccCCCCcccccccccCCCCCcccCCCCCCcchhhhHHHhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHH
Q 022915 82 HRRLTTSTGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFL 161 (290)
Q Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~fIY~~i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLil 161 (290)
+. + . . .+..+| +++++|+++++++++||+||.+||+|+|.+|+++++++++
T Consensus 44 ~~-----~-------------------~-~-~~~~~~---ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~i 94 (237)
T KOG3882|consen 44 LL-----E-------------------S-D-FLVPAY---ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLFI 94 (237)
T ss_pred cc-----c-------------------c-c-hhcchh---hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHHH
Confidence 00 0 0 0 022333 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc--------------------------------------------C-CCcCcC----CC-----------
Q 022915 162 LEAALVAFIAI--------------------------------------------D-RRWEKD----LP----------- 181 (290)
Q Consensus 162 lEla~~~~i~~--------------------------------------------d-~dW~~~----vP----------- 181 (290)
+|++++++.+. + .||.+. +|
T Consensus 95 ~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~~~~~vP~SCC~~~~~~~ 174 (237)
T KOG3882|consen 95 AELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNCSSNNVPPSCCKRTRRQK 174 (237)
T ss_pred HHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcCCCCCCCcccCCCccccc
Confidence 99999965542 0 123211 56
Q ss_pred --------CCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022915 182 --------FDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRR 231 (290)
Q Consensus 182 --------~~~tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a~~~~~~ 231 (290)
.+.+||.+++++|+++|+.++++++++++++|++++++|+.|...+++++
T Consensus 175 ~~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~ 232 (237)
T KOG3882|consen 175 FPQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR 232 (237)
T ss_pred ccccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999997765433
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.60 E-value=8.7e-17 Score=138.45 Aligned_cols=151 Identities=28% Similarity=0.468 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccc
Q 022915 9 SFAFILKFLNFLQGFIGVSIILYSIWMLDQWNHHVPVPPLPPLAPTPDTSVSSSSLSLFLNSDTTQSRVLSHDHRRLTTS 88 (290)
Q Consensus 9 ~lk~lL~~lN~l~~l~Gl~lI~~Giwml~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~~ 88 (290)
|+|+++.++|+++++.|++++++|+|++..... .. . ..
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~-~~---~--------------------------------~~------ 38 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQY-LS---E--------------------------------FS------ 38 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cc---c--------------------------------cc------
Confidence 589999999999999999999999999421111 10 0 00
Q ss_pred CCCCcccccccccCCCCCcccCCCCCCcchhhhHHHhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Q 022915 89 TGPLDVMVSGFDDVSGLGFDFNSFELPAPWFIYSFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVA 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~fIY~~i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLillEla~~~ 168 (290)
...... ..++++.+|+++++++++|++|+.++|+|+|..|.+++++++++|++++.
T Consensus 39 ---------------------~~~~~~---~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~~~~~v~~~~~~i 94 (221)
T PF00335_consen 39 ---------------------SSFISY---VIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILLILLFVLELVVGI 94 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------ccchhH---HHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccchhhHHHHHHHHHH
Confidence 000011 12366779999999999999999999999999999999999999998884
Q ss_pred Hhhc--C-------------------------------------------CCcCcC-----------------------C
Q 022915 169 FIAI--D-------------------------------------------RRWEKD-----------------------L 180 (290)
Q Consensus 169 ~i~~--d-------------------------------------------~dW~~~-----------------------v 180 (290)
+.+. + +||.+. -
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (221)
T PF00335_consen 95 VAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSCSSPDSCPDCQCPDDCSSEN 174 (221)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT---------TCS-TTCCCCH
T ss_pred hhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccccccccccccccccccccccccccc
Confidence 4322 0 112100 0
Q ss_pred CCCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022915 181 PFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRA 225 (290)
Q Consensus 181 P~~~tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a 225 (290)
+.+.+||.+++.++++++.....+++++++++|++++++|++|+.
T Consensus 175 ~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~ 219 (221)
T PF00335_consen 175 SIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCR 219 (221)
T ss_dssp CCTST-HHHHHHHHHCT----------------------------
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 157889999999999999999999999999999999999999864
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=93.96 E-value=0.66 Score=46.93 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHH
Q 022915 125 GVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL 162 (290)
Q Consensus 125 ~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLill 162 (290)
..=.+.+++.+++++|-+|+|||.|..|++.=++.+++
T Consensus 215 ~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 215 LLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 34467788888999999999999999998765555443
No 4
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=89.35 E-value=0.25 Score=37.47 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHhhchhHH
Q 022915 182 FDPTGELDSLRSFIEDNVDICK 203 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~~i~~ 203 (290)
.+++||.+++.+|+++|+.+++
T Consensus 65 ~~~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 65 YKVEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred cccccHHHHHHHHHHHHHHHhC
Confidence 4788999999999999988753
No 5
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=88.96 E-value=1.2 Score=44.31 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=23.8
Q ss_pred hHHHHHHHHhHHHHhhccchhhHHHHHHHHH
Q 022915 128 ILVCCIALIGCIAAEAISGCCLCFYAILKII 158 (290)
Q Consensus 128 ~il~iis~~GciGA~~~n~c~L~~Y~vll~l 158 (290)
++.+++.+++++|..|++||.+..++++-++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll 224 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLL 224 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHH
Confidence 4667788888999999999998766554433
No 6
>PF15345 TMEM51: Transmembrane protein 51
Probab=75.09 E-value=6.1 Score=36.55 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=19.0
Q ss_pred hHHHhhhhHHHHHHHHhHHHHhhccc
Q 022915 121 YSFMGVGILVCCIALIGCIAAEAISG 146 (290)
Q Consensus 121 Y~~i~vG~il~iis~~GciGA~~~n~ 146 (290)
|+++|+|+++++++++=++=-.++.+
T Consensus 62 yVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999954444444443
No 7
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=73.34 E-value=30 Score=31.00 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 022915 130 VCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIA 171 (290)
Q Consensus 130 l~iis~~GciGA~~~n~c~L~~Y~vll~lLillEla~~~~i~ 171 (290)
-++.+++|-.|-.+.|.-.|..|+.-.+++=++=+..++..+
T Consensus 81 S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 81 SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777888888887766665455455554333
No 8
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=67.72 E-value=15 Score=36.84 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=28.7
Q ss_pred HhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHH
Q 022915 124 MGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL 162 (290)
Q Consensus 124 i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLill 162 (290)
+++=++.+++.+++|+|..|.|||.+.+++++-++.+++
T Consensus 213 l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~ 251 (418)
T cd07912 213 LGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALII 251 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344456677777889999999999999986665544443
No 9
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=67.31 E-value=1.9 Score=35.48 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHH
Q 022915 126 VGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLL 162 (290)
Q Consensus 126 vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLill 162 (290)
.|+..++.|.+|..+..+.++|++..+.++-++-++.
T Consensus 37 ~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~ 73 (150)
T PF04103_consen 37 GGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALL 73 (150)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 4888888999998888888899988877666655544
No 10
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=65.56 E-value=13 Score=31.98 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022915 10 FAFILKFLNFLQGFIGVSIILYSIWML 36 (290)
Q Consensus 10 lk~lL~~lN~l~~l~Gl~lI~~Giwml 36 (290)
...+..++-++..++|++|-.+|=|--
T Consensus 38 ~Sg~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 38 PSGLFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHHHHHHHhhHhheeecccc
Confidence 344555667778888888888887754
No 11
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=62.54 E-value=5.1 Score=32.16 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
+|++||++++.+|+++|+
T Consensus 102 i~~~GC~~~i~~~~~~n~ 119 (119)
T cd03158 102 IYTRGCIDAVVLWIEDNL 119 (119)
T ss_pred ccccchHHHHHHHHHhhC
Confidence 688999999999999985
No 12
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=60.68 E-value=4.8 Score=31.32 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++++||++++.+|+++|+
T Consensus 87 i~~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 87 LYQEGCEAKLVKKLQEVM 104 (105)
T ss_pred hhhhccHHHHHHHHHHHh
Confidence 578899999999999986
No 13
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=60.64 E-value=6.2 Score=30.40 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++.+||++++.+|+++|+
T Consensus 83 ~~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 83 VYKEPCISKIKDFLKKNL 100 (100)
T ss_pred ccccccHHHHHHHHHhhC
Confidence 578899999999999985
No 14
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=60.03 E-value=4.6 Score=31.07 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++.+||++++.+|+++|+
T Consensus 82 ~y~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 82 IHLEGCVTKIEGWLKKNI 99 (99)
T ss_pred hHHhcCHHHHHHHHHHhC
Confidence 578899999999999985
No 15
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=59.42 E-value=5.9 Score=30.55 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++++||++++.+|+++|+
T Consensus 87 i~~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 87 VYQQGCFTLVTSFMEANM 104 (104)
T ss_pred cchhccHHHHHHHHHHhC
Confidence 578899999999999884
No 16
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=58.96 E-value=6.1 Score=31.99 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
+|++||++++.+|+++|+
T Consensus 103 iy~~GC~~~l~~~~~~n~ 120 (120)
T cd03167 103 VHLGGCGPPLRRWLRGNL 120 (120)
T ss_pred chhccCHHHHHHHHHhcC
Confidence 588999999999999985
No 17
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=57.78 E-value=6.5 Score=30.63 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.8
Q ss_pred chhhHHHHHhhCCCcccc
Q 022915 261 DIWSSRIREKVSCLNLSV 278 (290)
Q Consensus 261 d~ws~rmrekygl~~~~~ 278 (290)
-..|.++|||||++.+..
T Consensus 68 ~~~R~~iR~ry~I~g~~~ 85 (106)
T PF04749_consen 68 CSLRQQIRERYGIQGSCC 85 (106)
T ss_pred hhHHHHHHHHhCCCCCCh
Confidence 456889999999976543
No 18
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=56.22 E-value=7.7 Score=31.11 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.0
Q ss_pred hhhHHHHHhhCCCcccc
Q 022915 262 IWSSRIREKVSCLNLSV 278 (290)
Q Consensus 262 ~ws~rmrekygl~~~~~ 278 (290)
..|++||+|||+..+..
T Consensus 65 ~~R~~~R~ry~i~gs~~ 81 (104)
T TIGR01571 65 FIRIKLREKYGIQGAPC 81 (104)
T ss_pred HHHHHHHHHhCCCCCCc
Confidence 34789999999986543
No 19
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=55.98 E-value=4.8 Score=32.05 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++++||++++.+|+++|+
T Consensus 99 iy~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 99 VYQEGCMEKLQSWLNENL 116 (117)
T ss_pred hHHHhhHHHHHHHHHHhc
Confidence 478899999999999986
No 20
>PF15050 SCIMP: SCIMP protein
Probab=55.94 E-value=31 Score=29.06 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=24.8
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022915 193 SFIEDNVDICKWVGITVVIVQALSLLLAIILRAM 226 (290)
Q Consensus 193 ~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a~ 226 (290)
+|.++|+.|+..|++ +++--.+|+++-|+.|..
T Consensus 2 ~WWr~nFWiiLAVaI-I~vS~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 2 SWWRDNFWIILAVAI-ILVSVVLGLILYCVCRWQ 34 (133)
T ss_pred chHHhchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 688999999988885 444567888887777643
No 21
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=53.79 E-value=7 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++.+||++++.+|+++|+
T Consensus 104 i~~~GC~~~l~~~~~~n~ 121 (121)
T cd03159 104 IHTKGCVQAFEKWLQDNL 121 (121)
T ss_pred chHhhCHHHHHHHHHhcC
Confidence 578899999999999985
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=53.70 E-value=2.4e+02 Score=32.71 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=9.6
Q ss_pred hhHHHhhhhHHHHHHH
Q 022915 120 IYSFMGVGILVCCIAL 135 (290)
Q Consensus 120 IY~~i~vG~il~iis~ 135 (290)
.+.++|++++++.+-+
T Consensus 75 L~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 75 LFFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3456777777665533
No 23
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=52.98 E-value=6.4 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
.+.+||++++.+|+++|+
T Consensus 81 ~~~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 81 WWKTGCYEKVQQWLVDNL 98 (98)
T ss_pred hHHhhhHHHHHHHHHhcC
Confidence 578899999999999874
No 24
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=48.98 E-value=1.5e+02 Score=26.93 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 022915 14 LKFLNFLQGFIGVSIILYSIWMLDQWNH 41 (290)
Q Consensus 14 L~~lN~l~~l~Gl~lI~~Giwml~~~~~ 41 (290)
+-++-.++.++|+.++.+|..-+.+...
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD 32 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPD 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455566778888888888777665443
No 25
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=48.28 E-value=1e+02 Score=25.36 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHhhhhHHHHHHHH-hHHHHhhccchhhHH
Q 022915 122 SFMGVGILVCCIALI-GCIAAEAISGCCLCF 151 (290)
Q Consensus 122 ~~i~vG~il~iis~~-GciGA~~~n~c~L~~ 151 (290)
.++.+|+++.+++++ +.++.++++..+...
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 456667777666665 677777766644433
No 26
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=48.02 E-value=14 Score=28.92 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCC--CCCHHHHHHHHHhhc
Q 022915 182 FDP--TGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~--tGC~~~l~~fl~~n~ 199 (290)
++. +||.+++.+|+++|+
T Consensus 91 ~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 91 IYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred cccccCChHHHHHHHHHHhC
Confidence 456 899999999999985
No 27
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=47.89 E-value=11 Score=29.35 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
++.+||++++.+|+++|.
T Consensus 97 ~~~~GC~~~l~~~~~~~~ 114 (114)
T cd03156 97 YNKKGCYEKLSNPIERYA 114 (114)
T ss_pred hhhcCchHHHHHHHHhcC
Confidence 578899999999999873
No 28
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=47.76 E-value=12 Score=28.22 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
.+.+||++++.+|+++|+
T Consensus 67 ~~~~gC~~~i~~~~~~~~ 84 (84)
T cd03152 67 LITKSCPDAIDDVFNSKL 84 (84)
T ss_pred hccCCCcHHHHHHHHccC
Confidence 467899999999999884
No 29
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=45.52 E-value=12 Score=27.52 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHhhc
Q 022915 182 FDPTGELDSLRSFIEDNV 199 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n~ 199 (290)
.+++||.+++.+|+++|.
T Consensus 73 ~~~~GC~~~~~~~~~~~~ 90 (90)
T cd03127 73 LYTEGCLEKLVDFLRSNL 90 (90)
T ss_pred hhhHccHHHHHHHHHhhC
Confidence 468899999999999873
No 30
>PF14995 TMEM107: Transmembrane protein
Probab=44.40 E-value=79 Score=26.38 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhcC--CCcCcCCCCCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022915 158 ILFLLEAALVAFIAID--RRWEKDLPFDPTGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILR 224 (290)
Q Consensus 158 lLillEla~~~~i~~d--~dW~~~vP~~~tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~ 224 (290)
+.+.+.++...-++.+ .+=+..+|.+.+ +.-++.-+..+.++.+++++..++|..|++.+.-++
T Consensus 7 l~l~~Hlvi~i~i~~~~~~nv~a~lp~~~~---~~~y~~~~~~l~v~L~~s~~~l~ie~~g~~sG~smf 72 (124)
T PF14995_consen 7 LTLIAHLVIVICIFWSREENVRACLPLDYT---QAEYSTADTSLVVALSVSLLCLAIEFWGFFSGVSMF 72 (124)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHhhCCCCCc---HHHHHHhhhheehHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555555455544 333445775444 234667778889999999999999999998766443
No 31
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=42.12 E-value=27 Score=25.84 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 022915 18 NFLQGFIGVSIILYSIWMLDQ 38 (290)
Q Consensus 18 N~l~~l~Gl~lI~~Giwml~~ 38 (290)
..+++++|+.++++|+|.+.+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999865
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.94 E-value=23 Score=29.28 Aligned_cols=24 Identities=25% Similarity=0.503 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022915 203 KWVGITVVIVQALSLLLAIILRAM 226 (290)
Q Consensus 203 ~~v~l~v~ilqil~illA~~L~a~ 226 (290)
+|+.++++|+=++.+++.++.++.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 477777777776776666666543
No 33
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.66 E-value=72 Score=26.32 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 022915 16 FLNFLQGFIGVSIILYSIWMLDQW 39 (290)
Q Consensus 16 ~lN~l~~l~Gl~lI~~Giwml~~~ 39 (290)
.+-+++.++|..++..|+.+....
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677888999999999886543
No 34
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=34.91 E-value=19 Score=30.77 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.6
Q ss_pred cCcCCCCCCCCCHHHHHHHHHhh
Q 022915 176 WEKDLPFDPTGELDSLRSFIEDN 198 (290)
Q Consensus 176 W~~~vP~~~tGC~~~l~~fl~~n 198 (290)
...+.+++++||.+++.+|+++.
T Consensus 120 ~~~~~~i~~~GC~~~l~~~~~~~ 142 (143)
T cd03162 120 QTEELNLWTRGCREALLEYYTSK 142 (143)
T ss_pred CcccccchHHHHHHHHHHHHHhc
Confidence 45568899999999999999874
No 35
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=34.30 E-value=20 Score=30.66 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=10.4
Q ss_pred chhhHHHHHhhCCCcccc
Q 022915 261 DIWSSRIREKVSCLNLSV 278 (290)
Q Consensus 261 d~ws~rmrekygl~~~~~ 278 (290)
..-+.+||+||||...+-
T Consensus 62 e~mRq~IRdKY~l~k~e~ 79 (139)
T PF05835_consen 62 EKMRQHIRDKYGLKKKEE 79 (139)
T ss_dssp HHHHHHHHHHHT------
T ss_pred HHHHHHHHhhcccccccc
Confidence 456889999999998776
No 36
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=33.94 E-value=14 Score=38.71 Aligned_cols=16 Identities=13% Similarity=0.656 Sum_probs=0.0
Q ss_pred CcchhhhHHHhhhhHH
Q 022915 115 PAPWFIYSFMGVGILV 130 (290)
Q Consensus 115 ~~~~fIY~~i~vG~il 130 (290)
--||.+++.|+++.+.
T Consensus 545 KWPWyVWL~i~~~li~ 560 (610)
T PF01601_consen 545 KWPWYVWLAIILALIA 560 (610)
T ss_dssp ----------------
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3478777776665544
No 37
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=33.29 E-value=41 Score=31.25 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCcchhhhHHHhhhhHHHHHHHHhHHHHhhccch
Q 022915 114 LPAPWFIYSFMGVGILVCCIALIGCIAAEAISGC 147 (290)
Q Consensus 114 l~~~~fIY~~i~vG~il~iis~~GciGA~~~n~c 147 (290)
-..+|+-|++|++|.++++-++++++=+.|.-+-
T Consensus 191 ~~~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 191 QSNPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988876553
No 38
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.84 E-value=76 Score=28.86 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=15.6
Q ss_pred CcchhhHHHHHhhCCCcccc
Q 022915 259 HSDIWSSRIREKVSCLNLSV 278 (290)
Q Consensus 259 ~~d~ws~rmrekygl~~~~~ 278 (290)
+++.-...|||+||++..+.
T Consensus 114 ~~~~~~~~~~~e~g~~~~~~ 133 (218)
T cd02432 114 AKDALEAHARDELGITEGEY 133 (218)
T ss_pred hcChHHHHHHHhcCCCCCCC
Confidence 34567889999999987765
No 39
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.24 E-value=60 Score=29.58 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=15.7
Q ss_pred CCCcchh-hHHHHHhhCCCccc
Q 022915 257 IAHSDIW-SSRIREKVSCLNLS 277 (290)
Q Consensus 257 ~~~~d~w-s~rmrekygl~~~~ 277 (290)
..++|.| ...|||++|++..+
T Consensus 108 ~~~~~~~~~~m~~~elg~~~~~ 129 (225)
T cd02434 108 SKYRKLFVDIMMTEELGLIPDD 129 (225)
T ss_pred HhCchhhHHHHHHhhccCCCCc
Confidence 3345666 77899999998776
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.95 E-value=69 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 022915 15 KFLNFLQGFIGVSIILYSIWMLD 37 (290)
Q Consensus 15 ~~lN~l~~l~Gl~lI~~Giwml~ 37 (290)
.+.+++..++|+++++.|+-.++
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665543
No 41
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=29.07 E-value=1.6e+02 Score=25.74 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=29.6
Q ss_pred chhhhHHHhhhhHHHHHHHHhHHHHhhccch-------------hhHHHHHHHHHHHH
Q 022915 117 PWFIYSFMGVGILVCCIALIGCIAAEAISGC-------------CLCFYAILKIILFL 161 (290)
Q Consensus 117 ~~fIY~~i~vG~il~iis~~GciGA~~~n~c-------------~L~~Y~vll~lLil 161 (290)
|-.++.....++++++++++-.....+..+. -...|.++++-+++
T Consensus 29 P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 29 PRYIPLLYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLI 86 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 3344567777888888888888877765543 45556666654444
No 42
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=28.78 E-value=7.1e+02 Score=26.23 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022915 185 TGELDSLRSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMV 227 (290)
Q Consensus 185 tGC~~~l~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a~~ 227 (290)
-+-...+...++........+++...++.++.+++.+.+|..+
T Consensus 210 i~~~~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI 252 (577)
T KOG1362|consen 210 IGFTSSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRI 252 (577)
T ss_pred eecchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666655555555588888888988888888888665
No 43
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=28.17 E-value=98 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=18.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022915 198 NVDICKWVGITVVIVQALSLLLAIILRAM 226 (290)
Q Consensus 198 n~~i~~~v~l~v~ilqil~illA~~L~a~ 226 (290)
+-..+...+++.++-..++|.+.-++...
T Consensus 29 ~~~~vl~~gla~~iAga~SMa~G~yls~~ 57 (213)
T PF01988_consen 29 SSSVVLLAGLAGLIAGAISMAVGEYLSVK 57 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666777777777777644
No 44
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=26.95 E-value=1.9e+02 Score=26.28 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHHhhhhHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Q 022915 122 SFMGVGILVCCIALIGCIAAEAISGCCLCFYAILKIILFLLEAALV 167 (290)
Q Consensus 122 ~~i~vG~il~iis~~GciGA~~~n~c~L~~Y~vll~lLillEla~~ 167 (290)
.-|.+-.+-.++-++|..||..-++-.+..|.+-..+-+..-+-..
T Consensus 35 aPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfii 80 (200)
T PF05640_consen 35 APILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFII 80 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHH
Confidence 3344555555666788899999999999999987766555544444
No 45
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=26.80 E-value=72 Score=30.08 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 022915 145 SGCCLCFYAILKIILFLLEAALVAFIAI 172 (290)
Q Consensus 145 n~c~L~~Y~vll~lLillEla~~~~i~~ 172 (290)
.+-||.+|..++++++++-++.+.+++.
T Consensus 33 RKrcLY~fvLlL~i~ivvNLalTiWIlk 60 (292)
T KOG3950|consen 33 RKRCLYTFVLLLMILIVVNLALTIWILK 60 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888999999999999999988875
No 46
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=25.66 E-value=45 Score=26.58 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHh
Q 022915 182 FDPTGELDSLRSFIED 197 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~ 197 (290)
+|++||++++.+|++.
T Consensus 86 iy~~GC~~~i~~~l~~ 101 (103)
T cd03157 86 LYQEGCGPKIYSFIRG 101 (103)
T ss_pred ccccchHHHHHHHHHh
Confidence 5789999999999986
No 47
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.47 E-value=47 Score=35.92 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 022915 149 LCFYAILKIILFLLEAALVAFIA 171 (290)
Q Consensus 149 L~~Y~vll~lLillEla~~~~i~ 171 (290)
=.+|+++++++.+.-++.++.+|
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF 161 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAF 161 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444443333
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.46 E-value=2.8e+02 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=13.1
Q ss_pred HHHhhhhHHHHHHHHhHHHHh
Q 022915 122 SFMGVGILVCCIALIGCIAAE 142 (290)
Q Consensus 122 ~~i~vG~il~iis~~GciGA~ 142 (290)
+.+++|+++++.|..+++-..
T Consensus 10 ~~iilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777776666666654443
No 49
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.10 E-value=1.3e+02 Score=26.94 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccCCCC-Cchhhhh
Q 022915 199 VDICKWVGITVVIVQALSLLLAIILRAMV--STRRTNFDE-EDDYESE 243 (290)
Q Consensus 199 ~~i~~~v~l~v~ilqil~illA~~L~a~~--~~~~~~yds-dd~~~~~ 243 (290)
+++.+|++++++.+-+...+.+++=.... +.+..+|.+ .+||.+.
T Consensus 31 ~k~l~~~~i~~~a~i~i~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (181)
T PRK06654 31 IKILQWVAIGLFAVIFIVTVVYFVSKMVVSQSGAPNAFPVFSNEYLEK 78 (181)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCCCcchhhccc
Confidence 35678999988887777666555433332 233333555 5566544
No 50
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=21.90 E-value=5.6e+02 Score=25.61 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC--CCCCchhhhhhhhccCcCCcCCC----CCCcchhhHHHHHhh
Q 022915 204 WVGITVVIVQALSLLLAIILRAMVSTRRTN--FDEEDDYESERIRIREPLIHQQP----IAHSDIWSSRIREKV 271 (290)
Q Consensus 204 ~v~l~v~ilqil~illA~~L~a~~~~~~~~--ydsdd~~~~~r~~~r~pll~~~~----~~~~d~ws~rmreky 271 (290)
..++.+.++-++++++-+.|..++++|..= | +++..-.|+ +-+-++-. -+-++-|+.-+||-+
T Consensus 192 slgla~gv~la~t~Lf~~qlk~Il~nrt~IE~w--i~~Ka~~rr---~~~~~d~~~~f~ypydlgWr~n~r~vf 260 (414)
T KOG1314|consen 192 SLGLAIGVVLALTMLFFIQLKQILNNRTGIESW--IVEKAMDRR---EYYFNDDEGEFTYPYDLGWRINLREVF 260 (414)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH--HHHHHHHHH---HhhccCCCCceeeeccccccccHHHHh
Confidence 344444555566667767777666554331 3 233334443 23333311 333566999999875
No 51
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=21.73 E-value=5.6e+02 Score=22.57 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=41.5
Q ss_pred hHHHhhhhHHHHHHH------HhHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCCC
Q 022915 121 YSFMGVGILVCCIAL------IGCIAAEAISGCCLCFYAILKIILFLLEAALVAFIAIDRRWEKDLP 181 (290)
Q Consensus 121 Y~~i~vG~il~iis~------~GciGA~~~n~c~L~~Y~vll~lLillEla~~~~i~~d~dW~~~vP 181 (290)
|.+|.+..+++.++. +|..|-.+|+.--|. .++++-.++|+-+..|..+|..-++ +|
T Consensus 52 Y~~i~v~~ivl~~~~E~vRLylGy~gNL~e~~~al~---gfl~~t~~iqlPl~vFL~~n~~~~n-Lp 114 (174)
T KOG4694|consen 52 YLSILVAYIVLAVSAESVRLYLGYSGNLCEGATALW---GFLTVTPCIQLPLMVFLRLNAAGRN-LP 114 (174)
T ss_pred hHHHHHHHHHHHHhHHHHHhhcchhhhHhhchHHHH---HHHHHHHHHHHHHHHHHHHcccccc-Cc
Confidence 567777777777664 688898888887775 4566677788888888888865442 55
No 52
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.49 E-value=1.1e+02 Score=18.90 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q 022915 19 FLQGFIGVSIILYSIWMLDQWN 40 (290)
Q Consensus 19 ~l~~l~Gl~lI~~Giwml~~~~ 40 (290)
..+.++|+++++.+.|+.....
T Consensus 11 ~~~~~~G~~l~~~~~~~~~~rk 32 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLLLRKRK 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHheecc
Confidence 4566777777777777765443
No 53
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.66 E-value=1.3e+02 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHh---hcccccCCCCCch
Q 022915 213 QALSLLLAIILRAM---VSTRRTNFDEEDD 239 (290)
Q Consensus 213 qil~illA~~L~a~---~~~~~~~ydsdd~ 239 (290)
-++++.+..+..+. .+...+.||+||+
T Consensus 9 alLC~aLva~vQ~APQYa~GeeP~YDEdd~ 38 (65)
T PF10731_consen 9 ALLCVALVAIVQSAPQYAPGEEPSYDEDDD 38 (65)
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCcCcccC
Confidence 34444444444433 2344556988774
No 54
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.61 E-value=46 Score=28.87 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=15.0
Q ss_pred HHHhhhhHHHHHHHHhHHHHhhccchh
Q 022915 122 SFMGVGILVCCIALIGCIAAEAISGCC 148 (290)
Q Consensus 122 ~~i~vG~il~iis~~GciGA~~~n~c~ 148 (290)
+.|++|++++++.+++.+++..-.+|+
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhheecccc
Confidence 346666766666666655555433343
No 55
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=20.60 E-value=1.1e+02 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccC
Q 022915 17 LNFLQGFIGVSIILYSIWMLDQWN 40 (290)
Q Consensus 17 lN~l~~l~Gl~lI~~Giwml~~~~ 40 (290)
-|.+++.+|++++.+|.++..-..
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~ 29 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGG 29 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCC
Confidence 599999999999999999876543
No 56
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.03 E-value=93 Score=28.55 Aligned_cols=26 Identities=23% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 022915 13 ILKFLNFLQGFIGVSIILYSIWMLDQ 38 (290)
Q Consensus 13 lL~~lN~l~~l~Gl~lI~~Giwml~~ 38 (290)
.=.+||+++.++-+++++++..+++-
T Consensus 12 ~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhheec
Confidence 45789999999998888888777763
Done!