Query 022915
Match_columns 290
No_of_seqs 225 out of 1260
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kpa_A Probable ubiquitin fold 56.8 5.7 0.00019 33.6 2.4 26 247-272 18-44 (168)
2 1g8q_A CD81 antigen, extracell 48.3 7 0.00024 28.3 1.5 17 182-198 73-89 (90)
3 2z6o_A UFM1-conjugating enzyme 34.1 28 0.00095 29.7 3.2 26 247-272 16-42 (172)
4 1kil_E Complexin I snare-compl 34.1 16 0.00053 24.8 1.3 13 261-273 37-49 (49)
5 3uky_C Nuclear CAP-binding pro 32.6 15 0.0005 22.6 0.9 14 228-241 6-19 (32)
6 2wgo_A Ranaspumin-2, RSN-2; cy 24.3 31 0.0011 25.6 1.6 19 261-279 29-47 (98)
7 3rk3_E Complexin-1; snare prot 22.5 35 0.0012 24.2 1.4 17 261-277 40-56 (63)
8 1l4a_E Synaphin A; snare, snar 18.6 46 0.0016 24.6 1.4 17 261-277 44-60 (79)
9 3ukx_C Bimax2 peptide; arm rep 15.9 41 0.0014 19.7 0.5 16 229-244 9-24 (28)
10 1v54_I STA, cytochrome C oxida 14.1 1.7E+02 0.0059 21.2 3.6 16 229-244 49-64 (73)
No 1
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=56.76 E-value=5.7 Score=33.58 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.1
Q ss_pred ccCcCCcCCCCCCc-chhhHHHHHhhC
Q 022915 247 IREPLIHQQPIAHS-DIWSSRIREKVS 272 (290)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (290)
..-||+.+.+|.|+ |+|.+|+.|.|-
T Consensus 18 ~~ipll~t~agPrd~~~w~~RlkeEy~ 44 (168)
T 3kpa_A 18 SRIPLLKTKAGPRDGDKWTARLKEEYA 44 (168)
T ss_dssp TTSCCCCCCCCTTSTHHHHHHHHHHHH
T ss_pred hhCceeeccCCCCCHHHHHHHHHHHHH
Confidence 46899999998887 999999999883
No 2
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=48.33 E-value=7 Score=28.32 Aligned_cols=17 Identities=0% Similarity=0.004 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHhh
Q 022915 182 FDPTGELDSLRSFIEDN 198 (290)
Q Consensus 182 ~~~tGC~~~l~~fl~~n 198 (290)
++.+||.+++.+|+++|
T Consensus 73 ~~~~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 73 LFKEDCHQKIDDLFSGK 89 (90)
T ss_dssp HTSCCHHHHHHHHHHTC
T ss_pred CccCCcHHHHHHHHHhC
Confidence 47789999999999986
No 3
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=34.10 E-value=28 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.509 Sum_probs=21.8
Q ss_pred ccCcCCcCCCCCCc-chhhHHHHHhhC
Q 022915 247 IREPLIHQQPIAHS-DIWSSRIREKVS 272 (290)
Q Consensus 247 ~r~pll~~~~~~~~-d~ws~rmrekyg 272 (290)
..-||+.+.+|.|+ |+|.+|+.|-|-
T Consensus 16 ~~ip~m~t~a~p~~~~~w~~RL~eE~k 42 (172)
T 2z6o_A 16 SEIPVLKTNAGPRDRELWVQRLKEEYQ 42 (172)
T ss_dssp TTSCCCCCCCCTTCTHHHHHHHHHHHH
T ss_pred HhCcccccccCCCccHHHHHHHHHHHH
Confidence 46799999887887 999999988664
No 4
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.08 E-value=16 Score=24.81 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.0
Q ss_pred chhhHHHHHhhCC
Q 022915 261 DIWSSRIREKVSC 273 (290)
Q Consensus 261 d~ws~rmrekygl 273 (290)
..-++-+|+|||+
T Consensus 37 E~mRq~IRdKY~i 49 (49)
T 1kil_E 37 EVMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 3457789999996
No 5
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=32.61 E-value=15 Score=22.61 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=10.5
Q ss_pred cccccCCCCCchhh
Q 022915 228 STRRTNFDEEDDYE 241 (290)
Q Consensus 228 ~~~~~~ydsdd~~~ 241 (290)
..|+.+||+||.|-
T Consensus 6 ~KRr~dfd~ddgYr 19 (32)
T 3uky_C 6 RKRRGDFDEDENYR 19 (32)
T ss_pred ccccccCccccccc
Confidence 35778899888773
No 6
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR {Engystomops pustulosus}
Probab=24.35 E-value=31 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.4
Q ss_pred chhhHHHHHhhCCCccccc
Q 022915 261 DIWSSRIREKVSCLNLSVG 279 (290)
Q Consensus 261 d~ws~rmrekygl~~~~~~ 279 (290)
|.....+.+|||+||.+..
T Consensus 29 dkfqddikdkygvdtkdlk 47 (98)
T 2wgo_A 29 DKFQDDIKDKYGVDTKDLK 47 (98)
T ss_dssp HHSHHHHHHHTCCCTTTCE
T ss_pred HHHHHhhhhhhCCCcccee
Confidence 7778889999999998764
No 7
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=22.50 E-value=35 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=11.5
Q ss_pred chhhHHHHHhhCCCccc
Q 022915 261 DIWSSRIREKVSCLNLS 277 (290)
Q Consensus 261 d~ws~rmrekygl~~~~ 277 (290)
..-++-+|+|||+..-+
T Consensus 40 E~mRQ~IRdKY~ikKke 56 (63)
T 3rk3_E 40 EAVRQGIRDKYGIKKKE 56 (63)
T ss_dssp HHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHhccchhh
Confidence 45578899999998654
No 8
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=18.59 E-value=46 Score=24.57 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=11.9
Q ss_pred chhhHHHHHhhCCCccc
Q 022915 261 DIWSSRIREKVSCLNLS 277 (290)
Q Consensus 261 d~ws~rmrekygl~~~~ 277 (290)
..-++-+|+|||+..-+
T Consensus 44 E~mRq~IRdKY~ikKKe 60 (79)
T 1l4a_E 44 EEMRQTIRDKYGLKKKV 60 (79)
T ss_dssp HHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHhcccccc
Confidence 56678899999998655
No 9
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=15.95 E-value=41 Score=19.74 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=9.7
Q ss_pred ccccCCCCCchhhhhh
Q 022915 229 TRRTNFDEEDDYESER 244 (290)
Q Consensus 229 ~~~~~ydsdd~~~~~r 244 (290)
.+..++|+|||-...|
T Consensus 9 krkrewdddddppkkr 24 (28)
T 3ukx_C 9 KRKREWDDDDDPPKKR 24 (28)
T ss_dssp CCCCCCCCSSSCCSCC
T ss_pred HhhcccccCCCchhhh
Confidence 4456688888754333
No 10
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=14.11 E-value=1.7e+02 Score=21.24 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=11.1
Q ss_pred ccccCCCCCchhhhhh
Q 022915 229 TRRTNFDEEDDYESER 244 (290)
Q Consensus 229 ~~~~~ydsdd~~~~~r 244 (290)
+=..+||+++||+.-|
T Consensus 49 dFYknYD~~k~ferMk 64 (73)
T 1v54_I 49 DFYRNYDSMKDFEEMR 64 (73)
T ss_dssp HHHHTCCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHH
Confidence 3345699999997544
Done!