Query 022915
Match_columns 290
No_of_seqs 225 out of 1260
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022915.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022915hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvma1 a.5.7.1 (A:291-341) 4- 17.8 15 0.0011 23.6 0.4 15 264-278 8-22 (51)
2 d2g3ra2 b.34.9.1 (A:1538-1603) 13.8 25 0.0018 23.1 0.7 10 264-273 56-65 (66)
3 d1rh5b_ f.23.28.1 (B:) Preprot 10.3 1.8E+02 0.013 18.5 4.2 28 196-223 21-48 (56)
4 d2bv3a4 d.58.11.1 (A:404-478) 8.4 36 0.0026 22.8 0.0 18 258-275 54-71 (75)
5 d2gkpa1 d.351.1.1 (A:1-164) Hy 6.7 94 0.0068 24.2 1.8 19 258-276 83-101 (164)
6 d1v54i_ f.23.3.1 (I:) Mitochon 6.3 2.5E+02 0.018 18.8 3.6 52 192-245 14-65 (73)
7 d1zq1c1 a.182.1.2 (C:457-512) 5.3 34 0.0024 21.7 -1.5 24 261-284 4-27 (56)
8 d2e74h1 f.23.27.1 (H:3-29) Pet 5.1 2.6E+02 0.019 14.8 3.1 16 200-215 2-17 (27)
9 d2gyc31 a.108.1.1 (3:2-48) Rib 4.8 1.4E+02 0.01 18.3 1.4 12 265-276 23-34 (47)
10 d1msza_ d.68.7.1 (A:) SmuBP-2 4.5 78 0.0057 20.3 -0.1 17 266-282 36-52 (62)
No 1
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=17.82 E-value=15 Score=23.63 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=12.3
Q ss_pred hHHHHHhhCCCcccc
Q 022915 264 SSRIREKVSCLNLSV 278 (290)
Q Consensus 264 s~rmrekygl~~~~~ 278 (290)
..|..+|||+|+-|.
T Consensus 8 a~raa~~ygv~~rdi 22 (51)
T d1nvma1 8 AEIAAAKYNLKTLDI 22 (51)
T ss_dssp HHHHHHHHTCCHHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 478899999998664
No 2
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.80 E-value=25 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=8.0
Q ss_pred hHHHHHhhCC
Q 022915 264 SSRIREKVSC 273 (290)
Q Consensus 264 s~rmrekygl 273 (290)
-.|+||.|||
T Consensus 56 gnrlreqygl 65 (66)
T d2g3ra2 56 GNRLREQYGL 65 (66)
T ss_dssp HHTTHHHHBC
T ss_pred hhhHHHhhCC
Confidence 4678999987
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.32 E-value=1.8e+02 Score=18.53 Aligned_cols=28 Identities=4% Similarity=0.288 Sum_probs=21.7
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 022915 196 EDNVDICKWVGITVVIVQALSLLLAIIL 223 (290)
Q Consensus 196 ~~n~~i~~~v~l~v~ilqil~illA~~L 223 (290)
+|...+.+..++|++++-++|++.-.+.
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556688899999999999988766543
No 4
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=8.38 E-value=36 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=4.1
Q ss_pred CCcchhhHHHHHhhCCCc
Q 022915 258 AHSDIWSSRIREKVSCLN 275 (290)
Q Consensus 258 ~~~d~ws~rmrekygl~~ 275 (290)
-|-+.--.|||++||++.
T Consensus 54 lHLev~~~rL~~~~~vev 71 (75)
T d2bv3a4 54 LSLEIIVDRLKREFKVDA 71 (75)
T ss_dssp HHHTTCC-----------
T ss_pred hHHHHHHHHHHHHHCCce
Confidence 344677788888888764
No 5
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria meningitidis [TaxId: 487]}
Probab=6.74 E-value=94 Score=24.16 Aligned_cols=19 Identities=5% Similarity=0.228 Sum_probs=16.2
Q ss_pred CCcchhhHHHHHhhCCCcc
Q 022915 258 AHSDIWSSRIREKVSCLNL 276 (290)
Q Consensus 258 ~~~d~ws~rmrekygl~~~ 276 (290)
.+..+|-..+++|||.-|-
T Consensus 83 e~y~~Wv~~lm~~ygyKtk 101 (164)
T d2gkpa1 83 QRYEDWVAKLCGNLGYKTR 101 (164)
T ss_dssp HHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHhCCccH
Confidence 4579999999999998764
No 6
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.34 E-value=2.5e+02 Score=18.76 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhh
Q 022915 192 RSFIEDNVDICKWVGITVVIVQALSLLLAIILRAMVSTRRTNFDEEDDYESERI 245 (290)
Q Consensus 192 ~~fl~~n~~i~~~v~l~v~ilqil~illA~~L~a~~~~~~~~ydsdd~~~~~r~ 245 (290)
...++.|+-+...+++++.+.-=+++ +=-=-+...+=..+||+..||+.-|.
T Consensus 14 ~~~lk~hl~~a~~lsl~~a~~~Kf~v--~eprKkaYadFYknYDa~KdFe~Mr~ 65 (73)
T d1v54i_ 14 ARRLRFHIVGAFMVSLGFATFYKFAV--AEKRKKAYADFYRNYDSMKDFEEMRK 65 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHccchhhhHHHHHH
Confidence 34566666555555544433221111 10000112233456999999986553
No 7
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=5.31 E-value=34 Score=21.72 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=17.9
Q ss_pred chhhHHHHHhhCCCcccccccCCC
Q 022915 261 DIWSSRIREKVSCLNLSVGQISSD 284 (290)
Q Consensus 261 d~ws~rmrekygl~~~~~~~~~~~ 284 (290)
|.=..|-.++|||+.++-...++|
T Consensus 4 ~~k~~Ry~~eygLs~~dA~~l~~~ 27 (56)
T d1zq1c1 4 QAKVERYVKEYKLDRSLAQTLVDD 27 (56)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCC
Confidence 445788999999998876665443
No 8
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.08 E-value=2.6e+02 Score=14.77 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 022915 200 DICKWVGITVVIVQAL 215 (290)
Q Consensus 200 ~i~~~v~l~v~ilqil 215 (290)
+..+|+++.+++-=-+
T Consensus 2 ~~lgwv~llvvftwsi 17 (27)
T d2e74h1 2 DVLGWVALLVVFTWSI 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHhhhee
Confidence 4578888876654333
No 9
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=1.4e+02 Score=18.31 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=9.2
Q ss_pred HHHHHhhCCCcc
Q 022915 265 SRIREKVSCLNL 276 (290)
Q Consensus 265 ~rmrekygl~~~ 276 (290)
+-|.||+|+...
T Consensus 23 ~amEEKFGVsaa 34 (47)
T d2gyc31 23 SAMEEKFGVSAA 34 (47)
T ss_dssp HHHHHHTCTTTT
T ss_pred HHHHHHhCcchh
Confidence 468899998765
No 10
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.50 E-value=78 Score=20.31 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHHhhCCCcccccccC
Q 022915 266 RIREKVSCLNLSVGQIS 282 (290)
Q Consensus 266 rmrekygl~~~~~~~~~ 282 (290)
.+.++|||.+.+++.-.
T Consensus 36 ~lA~~~gl~s~S~G~~~ 52 (62)
T d1msza_ 36 QIAEEHGLRHDSSGEGK 52 (62)
T ss_dssp HHHHHTTEEEEEECSSS
T ss_pred HHHHHcCCeEEEEcCCC
Confidence 58899999999988643
Done!