BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022917
         (290 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
          Length = 571

 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 11/80 (13%)

Query: 84  ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSC---LET 140
           ++LP  I+ L+       I  N + SLPELP  L YL+  D  RL +LP++ +    L+ 
Sbjct: 76  DNLPPQITVLE-------ITQNALISLPELPASLEYLDACD-NRLSTLPELPASLKHLDV 127

Query: 141 PSNQTRGNSYLPVMFKFVNC 160
            +NQ      LP + +++N 
Sbjct: 128 DNNQLTXLPELPALLEYINA 147



 Score = 35.0 bits (79), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 102 INCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVM 154
           ++ N +  LPELP  L Y+N +D  +L  LP++ + LE  S +    ++LP +
Sbjct: 127 VDNNQLTXLPELPALLEYIN-ADNNQLTXLPELPTSLEVLSVRNNQLTFLPEL 178


>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
           From Yersinia Pestis
 pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
           Effector Protein From Yersinia Pestis
          Length = 454

 Score = 31.6 bits (70), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 80  GHN-FESLPTGISQLQRLKCLHLI--NCNMIRSLPELPFCLNYLNTSD--CKRLQSLPKI 134
           G+N  E LP    +LQ L  L  I  + N++++LP+LP  L  LN  D     L  LP+ 
Sbjct: 223 GNNILEELP----ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS 278

Query: 135 SSCLETPSNQTRGNSYLPVMFKFVNC 160
            + L+   N   G S LP    ++N 
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNA 304


>pdb|4HPQ|C Chain C, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
 pdb|4HPQ|F Chain F, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
          Length = 413

 Score = 31.6 bits (70), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 170 NFFANFQRRVHNALPGILHRKET 192
           +F+ANF+R  HN L  +  RKET
Sbjct: 329 DFYANFERSYHNLLKEVKRRKET 351


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRL 32
           LQ + L  +GI+ LP+SI +++ LK L++
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKI 213


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNS 34
           +QE+DL  + +  LPS IE +  LK L LN+
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNA 309


>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
           1.62 Angstroms Resolution
 pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
           Stomach
 pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
           Stomach
          Length = 329

 Score = 27.3 bits (59), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 101 LINCNMIRSLPELPFCLN 118
           L+NCN I++LP L F +N
Sbjct: 248 LVNCNSIQNLPSLTFIIN 265


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,432,513
Number of Sequences: 62578
Number of extensions: 266292
Number of successful extensions: 485
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 19
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)