Query 022917
Match_columns 290
No_of_seqs 444 out of 3942
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.3E-26 2.8E-31 240.5 21.0 256 2-287 778-1044(1153)
2 KOG0617 Ras suppressor protein 99.5 9.3E-16 2E-20 123.3 -4.6 134 2-138 56-195 (264)
3 PLN00113 leucine-rich repeat r 99.5 1.3E-13 2.8E-18 141.9 9.2 131 2-132 140-277 (968)
4 PLN00113 leucine-rich repeat r 99.4 2.9E-13 6.4E-18 139.3 9.6 134 1-134 163-303 (968)
5 PLN03210 Resistant to P. syrin 99.4 3.5E-12 7.6E-17 133.2 13.0 127 3-131 590-720 (1153)
6 KOG0617 Ras suppressor protein 99.3 1.6E-13 3.4E-18 110.5 -2.7 133 1-136 32-170 (264)
7 KOG0472 Leucine-rich repeat pr 99.1 1.6E-12 3.4E-17 116.9 -5.4 142 4-148 162-307 (565)
8 KOG0444 Cytoskeletal regulator 99.1 6.4E-12 1.4E-16 118.5 -2.3 131 3-136 246-383 (1255)
9 KOG0444 Cytoskeletal regulator 99.1 1.1E-11 2.4E-16 116.9 -1.2 101 4-105 128-256 (1255)
10 PLN03150 hypothetical protein; 99.0 8.3E-10 1.8E-14 108.5 8.8 106 27-132 420-532 (623)
11 KOG4194 Membrane glycoprotein 99.0 8.8E-11 1.9E-15 110.1 0.8 123 2-125 269-426 (873)
12 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.7E-14 89.9 5.2 112 11-126 6-124 (175)
13 KOG0472 Leucine-rich repeat pr 98.9 9.3E-12 2E-16 112.0 -8.1 161 1-165 67-232 (565)
14 PRK15387 E3 ubiquitin-protein 98.9 3.3E-09 7.1E-14 105.4 8.7 17 72-88 343-359 (788)
15 PRK15386 type III secretion pr 98.9 8.6E-09 1.9E-13 94.9 9.7 113 2-124 52-186 (426)
16 KOG4194 Membrane glycoprotein 98.9 2.8E-10 6.2E-15 106.7 -0.5 105 1-105 244-352 (873)
17 PRK15387 E3 ubiquitin-protein 98.8 1.5E-08 3.3E-13 100.7 9.9 108 5-124 204-311 (788)
18 PRK15370 E3 ubiquitin-protein 98.8 8.8E-09 1.9E-13 102.6 8.2 114 2-124 199-313 (754)
19 PF14580 LRR_9: Leucine-rich r 98.8 2.6E-09 5.6E-14 88.0 3.2 118 3-124 20-149 (175)
20 PRK15370 E3 ubiquitin-protein 98.8 1.4E-08 3.1E-13 101.1 8.4 121 3-133 179-300 (754)
21 PLN03150 hypothetical protein; 98.8 1.3E-08 2.9E-13 100.1 8.0 109 4-112 420-533 (623)
22 KOG0618 Serine/threonine phosp 98.8 7.1E-10 1.5E-14 108.7 -1.2 103 2-106 383-488 (1081)
23 KOG1259 Nischarin, modulator o 98.7 1.2E-09 2.6E-14 95.4 -1.9 120 3-126 285-410 (490)
24 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 69.1 3.4 59 2-60 1-60 (61)
25 KOG0618 Serine/threonine phosp 98.7 1.5E-09 3.2E-14 106.6 -2.2 157 3-165 46-203 (1081)
26 cd00116 LRR_RI Leucine-rich re 98.6 1.2E-08 2.6E-13 91.6 1.9 125 2-126 51-204 (319)
27 KOG1259 Nischarin, modulator o 98.6 4.6E-09 1E-13 91.8 -0.9 109 1-112 306-416 (490)
28 cd00116 LRR_RI Leucine-rich re 98.5 2E-08 4.3E-13 90.2 0.5 125 2-126 23-176 (319)
29 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.6E-12 87.2 4.0 103 2-105 116-220 (394)
30 KOG0532 Leucine-rich repeat (L 98.4 1.5E-08 3.3E-13 95.0 -3.6 129 4-136 100-231 (722)
31 KOG0532 Leucine-rich repeat (L 98.4 4.5E-08 9.7E-13 92.0 -0.6 106 4-112 145-251 (722)
32 KOG4658 Apoptotic ATPase [Sign 98.4 2E-07 4.4E-12 94.4 3.5 81 1-82 570-653 (889)
33 COG4886 Leucine-rich repeat (L 98.4 2E-07 4.4E-12 86.6 2.9 129 3-133 141-272 (394)
34 PF13855 LRR_8: Leucine rich r 98.3 5E-07 1.1E-11 61.1 3.8 56 50-105 2-60 (61)
35 KOG4237 Extracellular matrix p 98.3 5E-08 1.1E-12 88.1 -3.0 123 3-126 68-199 (498)
36 KOG4658 Apoptotic ATPase [Sign 98.2 8.2E-07 1.8E-11 90.1 3.8 106 5-111 526-635 (889)
37 KOG3207 Beta-tubulin folding c 98.1 1.1E-06 2.3E-11 80.5 1.8 126 1-126 145-312 (505)
38 KOG0531 Protein phosphatase 1, 98.1 5.8E-07 1.3E-11 84.4 -0.1 103 1-105 94-197 (414)
39 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 7E-11 53.2 3.2 37 2-38 1-37 (44)
40 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.4E-11 53.4 3.0 40 71-111 1-40 (44)
41 KOG0531 Protein phosphatase 1, 98.1 1.4E-06 3E-11 81.9 1.5 122 2-125 72-196 (414)
42 KOG1859 Leucine-rich repeat pr 98.0 1.4E-07 3.1E-12 90.9 -6.1 119 4-126 166-290 (1096)
43 KOG3207 Beta-tubulin folding c 98.0 1.6E-06 3.4E-11 79.4 0.5 76 47-123 244-334 (505)
44 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4E-10 65.7 5.3 99 4-103 44-149 (233)
45 KOG1859 Leucine-rich repeat pr 97.8 4.7E-07 1E-11 87.5 -5.9 102 2-106 187-291 (1096)
46 KOG2120 SCF ubiquitin ligase, 97.7 1.8E-06 3.9E-11 75.7 -3.5 125 4-128 212-351 (419)
47 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 67.4 8.1 91 21-124 48-141 (426)
48 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 77.6 1.4 122 3-124 123-259 (699)
49 KOG4237 Extracellular matrix p 97.5 3.2E-05 6.9E-10 70.3 1.2 85 21-105 270-357 (498)
50 KOG4579 Leucine-rich repeat (L 97.5 7E-06 1.5E-10 64.3 -2.6 105 5-111 30-139 (177)
51 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.5E-10 77.0 0.7 125 1-127 147-287 (699)
52 KOG1909 Ran GTPase-activating 97.5 3.7E-05 8E-10 68.8 0.8 124 2-126 92-252 (382)
53 KOG2739 Leucine-rich acidic nu 97.2 0.0002 4.3E-09 61.8 2.0 105 22-130 40-158 (260)
54 KOG4579 Leucine-rich repeat (L 97.0 4.5E-05 9.8E-10 59.8 -3.4 85 26-112 28-117 (177)
55 KOG2123 Uncharacterized conser 96.8 5.1E-05 1.1E-09 66.2 -4.4 96 24-121 18-123 (388)
56 KOG1909 Ran GTPase-activating 96.7 0.00045 9.8E-09 61.9 0.2 125 2-126 157-309 (382)
57 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3.1E-08 56.6 3.0 89 41-129 35-130 (260)
58 PF00560 LRR_1: Leucine Rich R 96.6 0.00073 1.6E-08 35.7 0.6 21 3-23 1-21 (22)
59 PF00560 LRR_1: Leucine Rich R 96.5 0.0012 2.7E-08 34.8 0.9 21 72-92 1-21 (22)
60 KOG2120 SCF ubiquitin ligase, 96.4 0.00044 9.5E-09 61.0 -1.8 123 2-126 234-374 (419)
61 KOG1644 U2-associated snRNP A' 96.3 0.0076 1.6E-07 50.5 4.9 77 48-125 41-123 (233)
62 KOG2123 Uncharacterized conser 95.6 0.00043 9.4E-09 60.5 -5.4 96 2-100 19-123 (388)
63 COG5238 RNA1 Ran GTPase-activa 95.6 0.022 4.8E-07 49.9 4.9 38 23-60 90-131 (388)
64 COG5238 RNA1 Ran GTPase-activa 95.4 0.01 2.2E-07 51.9 2.5 125 1-126 91-253 (388)
65 PF13504 LRR_7: Leucine rich r 95.3 0.0093 2E-07 29.3 1.1 17 2-18 1-17 (17)
66 PF13504 LRR_7: Leucine rich r 95.3 0.012 2.6E-07 28.9 1.5 16 72-87 2-17 (17)
67 PF13306 LRR_5: Leucine rich r 94.7 0.15 3.2E-06 39.0 7.1 79 21-103 8-90 (129)
68 KOG1947 Leucine rich repeat pr 94.7 0.0054 1.2E-07 57.9 -1.5 106 2-107 188-308 (482)
69 KOG2982 Uncharacterized conser 94.7 0.036 7.7E-07 49.3 3.7 35 3-37 72-109 (418)
70 KOG2982 Uncharacterized conser 94.3 0.014 2.9E-07 51.8 0.2 82 24-105 70-157 (418)
71 smart00370 LRR Leucine-rich re 93.7 0.041 8.9E-07 30.0 1.4 21 1-21 1-21 (26)
72 smart00369 LRR_TYP Leucine-ric 93.7 0.041 8.9E-07 30.0 1.4 21 1-21 1-21 (26)
73 smart00369 LRR_TYP Leucine-ric 93.2 0.079 1.7E-06 28.8 2.0 21 70-90 1-21 (26)
74 smart00370 LRR Leucine-rich re 93.2 0.079 1.7E-06 28.8 2.0 21 70-90 1-21 (26)
75 KOG3864 Uncharacterized conser 91.3 0.045 9.7E-07 45.9 -0.7 78 26-103 102-185 (221)
76 PF13306 LRR_5: Leucine rich r 90.2 0.73 1.6E-05 35.1 5.3 97 2-103 12-112 (129)
77 KOG4341 F-box protein containi 89.9 0.11 2.3E-06 48.2 0.3 84 24-107 293-385 (483)
78 KOG1947 Leucine rich repeat pr 89.8 0.09 2E-06 49.6 -0.2 106 23-128 186-308 (482)
79 KOG3864 Uncharacterized conser 89.2 0.044 9.5E-07 45.9 -2.4 78 4-81 103-186 (221)
80 smart00364 LRR_BAC Leucine-ric 84.6 0.57 1.2E-05 25.7 1.1 18 71-88 2-19 (26)
81 smart00365 LRR_SD22 Leucine-ri 82.6 0.92 2E-05 24.9 1.5 17 1-17 1-17 (26)
82 KOG0473 Leucine-rich repeat pr 78.9 0.018 3.9E-07 49.4 -9.2 85 21-106 38-123 (326)
83 PF13516 LRR_6: Leucine Rich r 77.0 0.86 1.9E-05 24.1 0.2 14 2-15 2-15 (24)
84 KOG4341 F-box protein containi 75.7 1.1 2.4E-05 41.7 0.6 107 2-108 320-440 (483)
85 KOG0473 Leucine-rich repeat pr 70.5 0.11 2.4E-06 44.7 -6.5 82 2-84 42-124 (326)
86 smart00367 LRR_CC Leucine-rich 66.7 4.7 0.0001 21.6 1.7 13 49-61 2-14 (26)
87 smart00368 LRR_RI Leucine rich 63.8 4.8 0.0001 22.2 1.3 14 2-15 2-15 (28)
88 KOG3763 mRNA export factor TAP 58.5 4.3 9.3E-05 39.2 0.8 61 47-108 216-284 (585)
89 KOG4308 LRR-containing protein 39.6 0.75 1.6E-05 44.1 -7.5 105 4-108 146-276 (478)
90 KOG3763 mRNA export factor TAP 38.8 14 0.00031 35.8 1.0 61 24-84 217-283 (585)
91 TIGR00864 PCC polycystin catio 21.9 57 0.0012 38.0 2.0 30 8-37 1-31 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=1.3e-26 Score=240.47 Aligned_cols=256 Identities=25% Similarity=0.353 Sum_probs=191.8
Q ss_pred CceeEEEcccC-CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917 2 ELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls 79 (290)
++|+.|+|++| .+.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+. .+. ...+|+.|+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECC
Confidence 47889999987 556699999999999999999999999999877 89999999999998664 122 24689999999
Q ss_pred CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCCCCcc--cCCCCCCCCcE
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSN--QTRGNSYLPVM 154 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~ 154 (290)
+|.++.+|.++..+++|+.|++++|+.++.+|.. +++|+.+++++|.+|..++........... .....-.....
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~ 934 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVC 934 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhc
Confidence 9999999999999999999999999999999875 467888899999999876542211100000 00000001234
Q ss_pred EEEeCCcCchhhhhhhhhHHHHHHHhhhcccchhccccCCCceeEEEecCCCCCCcceeeccCCceEE-EecCCCCCCCc
Q 022917 155 FKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSIT-IQLPRRCCNKN 233 (290)
Q Consensus 155 l~~~~C~~L~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pg~~iP~~Wf~~~~~g~sit-i~lp~~~~~~~ 233 (290)
+.|.+|.+|++.+. + +. ......+++||.++|+ ||.||+.|++++ |++|+.|....
T Consensus 935 l~f~nC~~L~~~a~--l---------------~~-----~~~~~~~~l~g~evp~-~f~hr~~g~sl~~i~l~~~~~~~~ 991 (1153)
T PLN03210 935 INFINCFNLDQEAL--L---------------QQ-----QSIFKQLILSGEEVPS-YFTHRTTGASLTNIPLLHISPCQP 991 (1153)
T ss_pred cccccccCCCchhh--h---------------cc-----cccceEEECCCccCch-hccCCcccceeeeeccCCcccCCC
Confidence 57899999987542 1 00 1123467899999999 999999999999 99999999889
Q ss_pred eeeEEEEEEEeeccCcCCcceeEEE--EEEe-cCCceeEEeccccccceEEEEEEcc
Q 022917 234 FIGFALCAVIEFVADESSFFHFNVS--CKYG-SDHSFLLVDSMSVYSNHVILGFDPL 287 (290)
Q Consensus 234 ~~gf~~c~v~~~~~~~~~~~~~~~~--c~~~-~~~~~~~~~~~~~~sdh~~~~y~~~ 287 (290)
+.||++|+|+++.+.......+.+. |.+. .+|..+. ...++|+|+.|..+
T Consensus 992 ~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~----~~~~~~~~~~~~~~ 1044 (1153)
T PLN03210 992 FFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD----SPYQPHVFSVTKKG 1044 (1153)
T ss_pred ccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc----cCCCceeEeeeccc
Confidence 9999999999887653332344454 4444 4455443 34667777766654
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.3e-16 Score=123.33 Aligned_cols=134 Identities=28% Similarity=0.390 Sum_probs=94.0
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~L 78 (290)
.+|+.|++.+|+|+++|.++..+++|+.|++..| .+..+|.+++.++.|+.||+.+|+.-+ |..|..++.|+.|+|
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 4667777777777777777777777777777663 345667777777777777777765332 555666677777777
Q ss_pred eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCC
Q 022917 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL 138 (290)
Q Consensus 79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~ 138 (290)
++|.|+.+|..++++++|+.|.+.+|. +-++|.. +..|++|++.+ ..+..+|.....+
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence 777777788888888888888888866 5566753 46778888887 4566677655444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=1.3e-13 Score=141.94 Aligned_cols=131 Identities=28% Similarity=0.368 Sum_probs=76.2
Q ss_pred CceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
++|++|+|++|.++. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.... +..++.+++|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 445555555555553 55566666666666666666666666666666666666666665332 445556666666666
Q ss_pred eCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917 79 SGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 79 s~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~ 132 (290)
++|.+. .+|..++++++|+.|++++|...+.+|.. +++|+.|++++|.-...+|
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 666655 55656666666666666666555555532 3455555555554333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=2.9e-13 Score=139.34 Aligned_cols=134 Identities=24% Similarity=0.332 Sum_probs=110.0
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+++|++|+|++|.+.+ +|..++++++|++|++++|...+.+|..++++++|+.|++++|.... +..++.+++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 4689999999998875 88889999999999999999888899999999999999999987543 56678888899999
Q ss_pred eeCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917 78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 78 Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
+++|.+. .+|..++++++|+.|++++|...+.+|.. +++|+.|++++|.....+|..
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 9988876 77888888888888888888877777753 467888888877655555543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=3.5e-12 Score=133.21 Aligned_cols=127 Identities=28% Similarity=0.378 Sum_probs=62.5
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n 81 (290)
+|+.|++.++.++.+|..+ ...+|+.|++.+|. +..+|.++..+++|+.|++++|..+. ++.++.+++|+.|++++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 3555555555555555544 34555555555533 33445455555555555555544322 334444555555555554
Q ss_pred c-CCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCC
Q 022917 82 N-FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL 131 (290)
Q Consensus 82 ~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l 131 (290)
. +..+|..++++++|+.|++++|+.++.+|.. +++|+.|++++|..++.+
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 3 3455555555555555555555555555442 344555555554444333
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-13 Score=110.54 Aligned_cols=133 Identities=29% Similarity=0.388 Sum_probs=112.9
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS 79 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls 79 (290)
|.+++.|.|++|.++.+|+.|..|.+|+.|++++|+ ++.+|.+|+.+++|+.|+++-|+... |.+||.++.|+.|||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 457888999999999999999999999999999855 68899999999999999999887433 8999999999999999
Q ss_pred CccCC--ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917 80 GHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 80 ~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
.|++. .+|..+..+..|+.|++++|. .+.+|.. +++|+.|.+.++ .+-++|...+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig 170 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIG 170 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHH
Confidence 99986 899999999999999999966 7788865 456677777663 4555665443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.11 E-value=1.6e-12 Score=116.87 Aligned_cols=142 Identities=29% Similarity=0.348 Sum_probs=114.0
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccC
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF 83 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l 83 (290)
|..|++.+|.++++|+..-.++.|++||... +.++.+|+.++.+.+|..|++..|.....++|+++..|++|.++.|.+
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH
Confidence 4556777777777776655577888888776 456889999999999999999999988888999999999999999999
Q ss_pred CccChhhc-CCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCCCCcccCCCC
Q 022917 84 ESLPTGIS-QLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGN 148 (290)
Q Consensus 84 ~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~ 148 (290)
+.+|+... ++++|..||+++|+ +++.|.. +.+|++||+++ ..+..+|...+.+-+..+.+.+|
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCC
Confidence 99998876 89999999999966 8999974 57899999987 57888887776653333333333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.09 E-value=6.4e-12 Score=118.53 Aligned_cols=131 Identities=29% Similarity=0.417 Sum_probs=90.5
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCEEEe
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKCLEL 78 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~L~L 78 (290)
+|+.|+|++|.|+++.-.++...+|+.|+++.|+ +..+|..++.|++|+.|.+.+|. ++ |.++|.+..|+.+..
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHh
Confidence 4445555555555544444444455555555533 34566666666666666666665 33 677888888999988
Q ss_pred eCccCCccChhhcCCccccEEecccCcCCccCCC---CCcccceeccccccccCCCCCCCC
Q 022917 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
++|.++-+|.++..+..|+.|.|+.|. +-.+|+ +++.|+.||+.++++|.--|....
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 888888889999999999999988755 667887 357889999999888876665433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.08 E-value=1.1e-11 Score=116.92 Aligned_cols=101 Identities=27% Similarity=0.375 Sum_probs=65.3
Q ss_pred eeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-------------------
Q 022917 4 LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI------------------- 63 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~------------------- 63 (290)
+-+|+|++|+|..+|.+ +-+|+.|-.|||++| .++.+|+.+..|..|++|.|++|....
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 34444555555444444 334455555555552 345566666667777777777776221
Q ss_pred --------cCCCCCCCCCCEEEeeCccCCccChhhcCCccccEEecccCc
Q 022917 64 --------LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 64 --------~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~ 105 (290)
|..+..+.+|..+|+|.|++..+|..+.++++|+.|+|++|.
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 455667778888888888888888888888888888888765
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=8.3e-10 Score=108.51 Aligned_cols=106 Identities=28% Similarity=0.422 Sum_probs=67.0
Q ss_pred CcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCC-ccChhhcCCccccEEeccc
Q 022917 27 LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLIN 103 (290)
Q Consensus 27 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~ 103 (290)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.... +..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566666666666666666667777777776665332 345666677777777777766 5666677777777777777
Q ss_pred CcCCccCCCCC----cccceeccccccccCCCC
Q 022917 104 CNMIRSLPELP----FCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 104 c~~l~~lp~~~----~~L~~L~l~~c~~l~~l~ 132 (290)
|+..+.+|..+ ..+..+++.++..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 76666666532 234456666655554443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.99 E-value=8.8e-11 Score=110.11 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=69.1
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-----------------
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----------------- 63 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----------------- 63 (290)
.++++|+|+.|+++.+.+. +..|+.|+.|++++|.+...-+++....++|+.|+|+.|...+
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 3455555555555554333 4455555555555555444444444455555555555554222
Q ss_pred ---------cCCCCCCCCCCEEEeeCccCC----ccChhhcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917 64 ---------LSGLSSLSSLKCLELSGHNFE----SLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC 125 (290)
Q Consensus 64 ---------~~~l~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c 125 (290)
...|..+++|+.|||+.|.+. .-...+..|++|+.|.+.+|+ ++.+|. .+..|++|++.++
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence 123555667777777777644 222245567777777777754 666664 3466777777654
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.2e-09 Score=89.91 Aligned_cols=112 Identities=30% Similarity=0.342 Sum_probs=29.4
Q ss_pred cCCCcccCccccCCCCCcEEeccCCCCCCcCccccC-CCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChh
Q 022917 11 LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTG 89 (290)
Q Consensus 11 ~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~ 89 (290)
.+.|+..|. +.+..+++.|+|++|.+.. + +.++ .+.+|+.|++++|...+++++..++.|+.|++++|.++.+...
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 344444544 4455566777777755432 2 2344 4667777777777766666677777777777777777766554
Q ss_pred h-cCCccccEEecccCcCCccCCCC-----Ccccceecccccc
Q 022917 90 I-SQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK 126 (290)
Q Consensus 90 l-~~l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~l~~c~ 126 (290)
+ ..+++|+.|++++|+ +..+.+. +++|+.|++.+++
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 4 356777777777654 3333332 3556666666554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.92 E-value=9.3e-12 Score=111.99 Aligned_cols=161 Identities=26% Similarity=0.337 Sum_probs=125.9
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS 79 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls 79 (290)
+..|.+|++++|++.++|+.++.+..++.|+.+.|+ +..+|+.++.+.+|..|+.+.|...+ +++++.+..|+.++..
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 356889999999999999999999999999999965 46789999999999999999998666 6788899999999999
Q ss_pred CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCC-CCcccCCCCCCCCcEE
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLE-TPSNQTRGNSYLPVMF 155 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~l 155 (290)
+|++.++|.++..+.+|..|++.+|+ ++.+|+. ++.|++||... ..++++|...+..+ +..+.+..|++....
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP- 222 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP- 222 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-
Confidence 99999999999999999999999876 5555542 46788887754 56888888766542 222333444443333
Q ss_pred EEeCCcCchh
Q 022917 156 KFVNCVKLHK 165 (290)
Q Consensus 156 ~~~~C~~L~~ 165 (290)
.|..|..|.+
T Consensus 223 ef~gcs~L~E 232 (565)
T KOG0472|consen 223 EFPGCSLLKE 232 (565)
T ss_pred CCCccHHHHH
Confidence 6778877766
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=3.3e-09 Score=105.43 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=11.8
Q ss_pred CCCEEEeeCccCCccCh
Q 022917 72 SLKCLELSGHNFESLPT 88 (290)
Q Consensus 72 ~L~~L~Ls~n~l~~lp~ 88 (290)
+|+.|+|++|+++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 343 GLQELSVSDNQLASLPT 359 (788)
T ss_pred ccceEecCCCccCCCCC
Confidence 57777777777776664
No 15
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.89 E-value=8.6e-09 Score=94.92 Aligned_cols=113 Identities=28% Similarity=0.485 Sum_probs=81.6
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
.+++.|++++|.|+.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+. . -..+|+.|+++++
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--s--LP~sLe~L~L~~n 122 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--G--LPESVRSLEIKGS 122 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--c--cccccceEEeCCC
Confidence 578999999999999983 24579999999999999999765 4689999999996443 1 1246888888876
Q ss_pred c---CCccChhhcCC------------------ccccEEecccCcCCccCC-CCCcccceecccc
Q 022917 82 N---FESLPTGISQL------------------QRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD 124 (290)
Q Consensus 82 ~---l~~lp~~l~~l------------------~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~ 124 (290)
. +..+|.++..| ++|++|++.+|..+. +| .+|.+|+.|+++.
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHI 186 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEecc
Confidence 5 45777666544 256677777766443 33 3556677777654
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.87 E-value=2.8e-10 Score=106.75 Aligned_cols=105 Identities=24% Similarity=0.243 Sum_probs=77.3
Q ss_pred CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
|++|+.|.|..|.|..+.+. |..+.++++|+|+.|.....--.++.+|++|+.|++|+|.+-. ++.+...++|+.|+
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 34566666666666666555 6677888888888877665556678889999999999987433 67788889999999
Q ss_pred eeCccCCccCh-hhcCCccccEEecccCc
Q 022917 78 LSGHNFESLPT-GISQLQRLKCLHLINCN 105 (290)
Q Consensus 78 Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~ 105 (290)
|+.|+++.+++ ++..|..|+.|.|++|.
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhcccccc
Confidence 99999998864 45556666666666543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.83 E-value=1.5e-08 Score=100.75 Aligned_cols=108 Identities=24% Similarity=0.245 Sum_probs=57.6
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCC
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE 84 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~ 84 (290)
..|+++++.++++|+.+. ++|+.|++.+|++ ..+|. .+++|++|++++|....++. ..++|+.|++++|.++
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~L-t~LP~---lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcC-CCCCC---CCCCCcEEEecCCccCcccC--cccccceeeccCCchh
Confidence 467777777777777654 3677777777543 44564 24667777777775333322 1245555555555555
Q ss_pred ccChhhcCCccccEEecccCcCCccCCCCCcccceecccc
Q 022917 85 SLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124 (290)
Q Consensus 85 ~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~ 124 (290)
.+|... .+|+.|++++|+ +..+|..+++|+.|++++
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 311 (788)
T ss_pred hhhhch---hhcCEEECcCCc-cccccccccccceeECCC
Confidence 444321 234444444432 334444444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.83 E-value=8.8e-09 Score=102.58 Aligned_cols=114 Identities=28% Similarity=0.397 Sum_probs=64.4
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|+.|+|++|.|+++|..+. ++|+.|++++|.+ ..+|..+. .+|+.|+|++|....++. .-..+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINRITELPE-RLPSALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCccCcCCh-hHhCCCCEEECcCC
Confidence 357788888888888877653 4777888877654 45665442 356777777666333211 01235666666666
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCC-CCcccceecccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSD 124 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~ 124 (290)
+++.+|..+. ++|+.|++++|+ +..+|. ++.+|+.|++++
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred ccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence 6666655443 356666666553 334443 223344444443
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=2.6e-09 Score=88.00 Aligned_cols=118 Identities=27% Similarity=0.322 Sum_probs=48.0
Q ss_pred ceeEEEcccCCCcccCcccc-CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-CC-CCCCCCCEEEee
Q 022917 3 LLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-GL-SSLSSLKCLELS 79 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~l-~~l~~L~~L~Ls 79 (290)
.+++|+|++|.|+.+.. ++ .+.+|+.|++++|.+. .++ .+..++.|++|++++|...++. .+ ..+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 57899999999998754 66 6899999999997764 454 5778999999999999966553 23 358999999999
Q ss_pred CccCCccC--hhhcCCccccEEecccCcCCccCCC-------CCcccceecccc
Q 022917 80 GHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSD 124 (290)
Q Consensus 80 ~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~-------~~~~L~~L~l~~ 124 (290)
+|++..+- ..+..+++|+.|++.+|+... .+. .+|+|+.||-..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 99987553 357789999999999988543 343 146677776544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.79 E-value=1.4e-08 Score=101.06 Aligned_cols=121 Identities=27% Similarity=0.428 Sum_probs=88.9
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
+...|+++++.++++|..+. ++|+.|++++|.+ ..+|..+. ++|+.|++++|....++. .-..+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCc
Confidence 46788888888888887664 5788899988754 46777654 588999999887433221 123478899999998
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCCC
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~ 133 (290)
+..+|..+. ++|+.|++++|+ +..+|. ++.+|+.|++++| .++.+|.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNK-ISCLPENLPEELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCc-cCccccccCCCCcEEECCCC-ccccCcc
Confidence 888887764 578899998765 557776 4568889998886 5666664
No 21
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=1.3e-08 Score=100.07 Aligned_cols=109 Identities=21% Similarity=0.361 Sum_probs=96.2
Q ss_pred eeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917 4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG 80 (290)
Q Consensus 4 L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~ 80 (290)
++.|+|+++.+++ +|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.... |..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 7889999999987 89999999999999999999999999999999999999999998543 67789999999999999
Q ss_pred ccCC-ccChhhcCC-ccccEEecccCcCCccCCC
Q 022917 81 HNFE-SLPTGISQL-QRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 81 n~l~-~lp~~l~~l-~~L~~L~l~~c~~l~~lp~ 112 (290)
|.++ .+|..++.+ .++..+++.+|..+...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9988 899988764 4678899999887766554
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=7.1e-10 Score=108.72 Aligned_cols=103 Identities=29% Similarity=0.462 Sum_probs=64.5
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
++|+.|+|++|.+..+|.+ +.++..|+.|+|+||+ +..+|..+.++..|++|...+|..+..+++..++.|+.+|++.
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC 461 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc
Confidence 4566666666666666665 5666666666666643 3566666666666666666666655555666666677777776
Q ss_pred ccCC--ccChhhcCCccccEEecccCcC
Q 022917 81 HNFE--SLPTGISQLQRLKCLHLINCNM 106 (290)
Q Consensus 81 n~l~--~lp~~l~~l~~L~~L~l~~c~~ 106 (290)
|+++ .+|..... ++|++|+++||..
T Consensus 462 N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 6655 34433222 5666777766654
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.2e-09 Score=95.38 Aligned_cols=120 Identities=28% Similarity=0.298 Sum_probs=88.5
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCC-CCCCCCCEEEeeCc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGH 81 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l-~~l~~L~~L~Ls~n 81 (290)
.|++|||++|.|+.+..++.-+++++.|+++.|.+... .++..+++|+.||||+|...+..++ ..+-+.++|.|++|
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 57889999999999999998899999999999776543 3477889999999999974444333 24567788888888
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCC-----CCcccceecccccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCK 126 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~ 126 (290)
.++++. ++++|-+|..|++++|+ ++.+.+ .++.|+.+.+.+++
T Consensus 363 ~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 363 KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 887775 67788888888888865 333322 13456666666654
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.2e-08 Score=69.14 Aligned_cols=59 Identities=27% Similarity=0.409 Sum_probs=50.6
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 60 (290)
++|++|++++|.|+++|+ .+..+++|++|++++|.+...-|..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999886 48889999999999988765556678889999999998885
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.69 E-value=1.5e-09 Score=106.59 Aligned_cols=157 Identities=24% Similarity=0.234 Sum_probs=116.2
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n 81 (290)
+|+.|++++|.+...|..+..+.+|+.|+++. +.+..+|.++.++.+|++|+|.+|.... |.++..+.+|+.|+++.|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 38899999999999999999999999999998 5568889889999999999999887433 778889999999999999
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCCCCCCCCCCcccCCCCCCCCcEEEEeCCc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCV 161 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~C~ 161 (290)
.+..+|..+..++.+..+..++|..++.+++.- ++.+++..+.....+......... .+.+..|++. .+++++|.
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~-~ldLr~N~~~--~~dls~~~ 199 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLIDIYNLTH-QLDLRYNEME--VLDLSNLA 199 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhcchhhhhe-eeecccchhh--hhhhhhcc
Confidence 999999999999999999988886666666543 555555554444455444443311 2333333322 45566666
Q ss_pred Cchh
Q 022917 162 KLHK 165 (290)
Q Consensus 162 ~L~~ 165 (290)
+|+.
T Consensus 200 ~l~~ 203 (1081)
T KOG0618|consen 200 NLEV 203 (1081)
T ss_pred chhh
Confidence 6643
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.62 E-value=1.2e-08 Score=91.63 Aligned_cols=125 Identities=26% Similarity=0.190 Sum_probs=74.0
Q ss_pred CceeEEEcccCCCcc-------cCccccCCCCCcEEeccCCCCCCcCccccCCCCC---CcEEeccCCCCCC------cC
Q 022917 2 ELLQEIDLFLSGIKE-------LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKK---LQKLCLSQCRCLI------LS 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~---L~~L~Ls~~~~l~------~~ 65 (290)
++|++|+++++.+.. ++..+..+++|+.|++++|.+.+..+..+..+.+ |+.|++++|.... ..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457777777765552 3344566777777777777765555554444444 7777777776331 12
Q ss_pred CCCCC-CCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc----cCCCCC---cccceecccccc
Q 022917 66 GLSSL-SSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR----SLPELP---FCLNYLNTSDCK 126 (290)
Q Consensus 66 ~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~----~lp~~~---~~L~~L~l~~c~ 126 (290)
.+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|.... .++..+ ++|+.|++++|.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 33445 67777777777766 334455566677777777765431 122111 367777777663
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=4.6e-09 Score=91.77 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
++.++.|++++|.|..+-. +..|.+|+.|||++|... .+-..-..+.+.++|.|++|..-+..+++.+-+|..||+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence 4689999999999999876 899999999999997654 34334447889999999999866678888999999999999
Q ss_pred ccCCccC--hhhcCCccccEEecccCcCCccCCC
Q 022917 81 HNFESLP--TGISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 81 n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
|+|+.+- ..|++|+.|+++.+.+|. +..+|+
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 9998554 379999999999999987 555554
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=2e-08 Score=90.24 Aligned_cols=125 Identities=28% Similarity=0.178 Sum_probs=70.5
Q ss_pred CceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCC------CcCccccCCCCCCcEEeccCCCCCC--cCCCC
Q 022917 2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKL------GFLPESLCNLKKLQKLCLSQCRCLI--LSGLS 68 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~ 68 (290)
.+|++|+++++.++. ++..+...++|+.|+++++... ..++..+..+++|+.|++++|.... +..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 356777777776632 5555566666777777765543 1223345566677777777776431 12222
Q ss_pred CC---CCCCEEEeeCccCC-----ccChhhcCC-ccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917 69 SL---SSLKCLELSGHNFE-----SLPTGISQL-QRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 69 ~l---~~L~~L~Ls~n~l~-----~lp~~l~~l-~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~ 126 (290)
.+ ++|+.|++++|.++ .+...+..+ ++|+.|++++|.... .++.. .+.|+.|++++|.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 22 34777777777665 223344555 677777777766442 11111 2357777776653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=87.25 Aligned_cols=103 Identities=35% Similarity=0.405 Sum_probs=79.4
Q ss_pred CceeEEEcccCCCcccCccccCCC-CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCC-CCCCCCEEEee
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLS-SLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~-~l~~L~~L~Ls 79 (290)
+.++.|++.++.++++|+..+.+. +|+.|++++|.. ..+|..++.+++|+.|++++|.....+... .+++|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 457888888888888888777774 888888888554 566667788888888888888865544444 77888888888
Q ss_pred CccCCccChhhcCCccccEEecccCc
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~ 105 (290)
+|.+..+|..+..+..|+.|.+++|.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCc
Confidence 88888888776666678888887765
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=1.5e-08 Score=95.03 Aligned_cols=129 Identities=29% Similarity=0.477 Sum_probs=90.7
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~ 82 (290)
|+.+.|..|.+..+|..+.++..|++|||+.|. +..+|..++.|+ |+.|.+++|+... |++++.+..|..||.+.|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh
Confidence 445566667777777778888888888888754 466777777766 7888888776433 6777777788888888888
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCCC--cccceeccccccccCCCCCCCC
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
+..+|..++++.+|+.|.+..|. +..+|+.+ -.|..||++ |+.+..+|..+.
T Consensus 178 i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr 231 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS-CNKISYLPVDFR 231 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc-cCceeecchhhh
Confidence 88888888888888888877755 44455432 246667774 466777776554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=4.5e-08 Score=91.97 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=62.4
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~ 82 (290)
|+.|-+++|+++.+|+.++.+.+|..||.+.|.. ..+|..++++.+|+.|++..|..+. |+++. .-.|..||++.|+
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence 4455555555555555555555555555555332 3445555555555555555554333 44444 3357777777777
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCC
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
+..+|..+.+|+.|++|-|.+|. +++=|.
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred eeecchhhhhhhhheeeeeccCC-CCCChH
Confidence 77777777777777777777655 555443
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=2e-07 Score=94.42 Aligned_cols=81 Identities=37% Similarity=0.456 Sum_probs=66.3
Q ss_pred CCceeEEEcccC-CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-c-CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-L-SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~-~~l~~l~~L~~L~ 77 (290)
|+.|++|||++| .+.++|++|+.|-+|++|++++ ..+..+|.++++|++|.+|++..+..+. + .....+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 678999999986 7788999999999999999999 4457899999999999999999877544 2 3334488888888
Q ss_pred eeCcc
Q 022917 78 LSGHN 82 (290)
Q Consensus 78 Ls~n~ 82 (290)
+-...
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 87665
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=2e-07 Score=86.63 Aligned_cols=129 Identities=30% Similarity=0.318 Sum_probs=96.7
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCC-CCCCCCCEEEeeCc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGH 81 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l-~~l~~L~~L~Ls~n 81 (290)
+|+.|++++|.++.+|..++.+++|+.|++++|.. ..+|...+.+++|+.|++++|....++.. +....|++|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 78999999999999987789999999999999664 56776666889999999999985554443 45556888888888
Q ss_pred cCCccChhhcCCccccEEecccCcCCc--cCCCCCcccceeccccccccCCCCC
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~~~~L~~L~l~~c~~l~~l~~ 133 (290)
.....+..+.++.++..+.+.+|.... .....+++++.|+++++ .+..++.
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~ 272 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS 272 (394)
T ss_pred cceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc
Confidence 766677778888888888877765433 22234566888888664 4555554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=5e-07 Score=61.12 Aligned_cols=56 Identities=36% Similarity=0.497 Sum_probs=29.8
Q ss_pred CCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCc
Q 022917 50 KLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCN 105 (290)
Q Consensus 50 ~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~ 105 (290)
+|++|++++|.... ...+..+++|++|++++|.++.+|. .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444443222 2344555566666666666665543 45666666666666654
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.28 E-value=5e-08 Score=88.07 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=99.1
Q ss_pred ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEe
Q 022917 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLEL 78 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~L 78 (290)
....++|..|.|+.+|+. |+.+++|+.|||+.|.+...-|..|.++++|..|.+.+++.++ -..|+.+.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456889999999999887 8999999999999999988899999999999999888855454 356888999999999
Q ss_pred eCccCCcc-ChhhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~ 126 (290)
.-|.+..+ ...+..+++|..|.+.+|. ++.+++. ...++.+++..++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 98888844 5578889999999998865 6777752 3456666665444
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=8.2e-07 Score=90.09 Aligned_cols=106 Identities=27% Similarity=0.370 Sum_probs=51.1
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCC-CCcCccc-cCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTK-LGFLPES-LCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG 80 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~-l~~lp~~-i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~ 80 (290)
+.+.+-+|.+..++.... .++|+.|-+.+|.. +..++.. |..++.|++|||++|..+. |..++.+-+|++|++++
T Consensus 526 rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 344444444444444322 22455555555431 2222222 3345555555555554433 44555555555555555
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 111 (290)
+.+..+|.++++|..|.+|++..+..+..+|
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred CCccccchHHHHHHhhheecccccccccccc
Confidence 5555555555555555555555544444443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-06 Score=80.46 Aligned_cols=126 Identities=23% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCCCCcCcccc-CCCCCCcEEeccCCCCCC-------------
Q 022917 1 MELLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLSQCRCLI------------- 63 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~~~~l~------------- 63 (290)
+++++.|||++|-+.. +-.-...|++|+.|+++.|.+.--..... ..++.|+.|.|++|....
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4567777777765554 22224566777777777765532211111 135566666666665221
Q ss_pred --------------cCCCCCCCCCCEEEeeCccCCccC--hhhcCCccccEEecccCcCCc-cCCC--------CCcccc
Q 022917 64 --------------LSGLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIR-SLPE--------LPFCLN 118 (290)
Q Consensus 64 --------------~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~-~lp~--------~~~~L~ 118 (290)
......+..|+.|||++|++-.++ ..++.++.|+.|+++.|..-. .+|+ ..++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 112233567888888888876665 356778888888888765321 1121 246788
Q ss_pred eecccccc
Q 022917 119 YLNTSDCK 126 (290)
Q Consensus 119 ~L~l~~c~ 126 (290)
+|++..++
T Consensus 305 ~L~i~~N~ 312 (505)
T KOG3207|consen 305 YLNISENN 312 (505)
T ss_pred eeecccCc
Confidence 88887653
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=5.8e-07 Score=84.37 Aligned_cols=103 Identities=29% Similarity=0.349 Sum_probs=74.6
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|+.|++.+|.|+++...+..+++|++|++++|.+.. +. .+..++.|+.|++++|....+..+..+.+|+.+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence 356778888888887776656777888888888865533 32 3556777888888888766677777778888888888
Q ss_pred ccCCccChh-hcCCccccEEecccCc
Q 022917 81 HNFESLPTG-ISQLQRLKCLHLINCN 105 (290)
Q Consensus 81 n~l~~lp~~-l~~l~~L~~L~l~~c~ 105 (290)
|.++.+... +..+.+|+.+.+.+|.
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCCc
Confidence 887766643 4677778888877765
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.2e-06 Score=53.22 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=30.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCC
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL 38 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l 38 (290)
++|++|++++|+|+++|+.+++|++|+.|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5789999999999999888899999999999997653
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3e-06 Score=53.40 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=30.7
Q ss_pred CCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCC
Q 022917 71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (290)
Q Consensus 71 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 111 (290)
++|++|++++|+|+.+|..+++|++|+.|++++|+ +..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888899999999888778899999999998876 44444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=1.4e-06 Score=81.85 Aligned_cols=122 Identities=27% Similarity=0.314 Sum_probs=93.4
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
..++.+++..|.|+.+-..++.+++|+.|++.+|.+ ..+...+..+++|++|++++|....+..+..++.|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 346667788888887555578899999999999665 4444336789999999999999888888999999999999999
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCC---CCCcccceeccccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLP---ELPFCLNYLNTSDC 125 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp---~~~~~L~~L~l~~c 125 (290)
.++.+. .+..++.|+.+++++|.....=+ +...+++.+.+.++
T Consensus 151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 998887 56668999999999977443333 33455666666553
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1.4e-07 Score=90.90 Aligned_cols=119 Identities=24% Similarity=0.202 Sum_probs=76.2
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCC-CCCCEEEeeCcc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSL-SSLKCLELSGHN 82 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l-~~L~~L~Ls~n~ 82 (290)
|...+.++|.++.+..++.-++.|+.|||+.|++...- .+..++.|++|||++|....++.++.- ..|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 44556667777777777777777888888877765432 566777788888877764444333321 137777777777
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCC-----Ccccceecccccc
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK 126 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~l~~c~ 126 (290)
++++- ++.+|.+|+.||+++|- +....++ +..|+.|.+.|++
T Consensus 244 l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77665 57777777777777754 3222221 3456666666643
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.6e-06 Score=79.39 Aligned_cols=76 Identities=24% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCCCcEEeccCCCCCCc---CCCCCCCCCCEEEeeCccCC--ccChh-----hcCCccccEEecccCcCCccCCC----
Q 022917 47 NLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLELSGHNFE--SLPTG-----ISQLQRLKCLHLINCNMIRSLPE---- 112 (290)
Q Consensus 47 ~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~Ls~n~l~--~lp~~-----l~~l~~L~~L~l~~c~~l~~lp~---- 112 (290)
.+..|+.|+|++|..+.. ...+.++.|+.|+++.+.+. .+|+. ...+++|++|++..|+. ..++.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l 322 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHL 322 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchh
Confidence 466789999999987763 45778999999999999987 45654 35678999999999874 33332
Q ss_pred -CCcccceeccc
Q 022917 113 -LPFCLNYLNTS 123 (290)
Q Consensus 113 -~~~~L~~L~l~ 123 (290)
..++|+.|.+.
T Consensus 323 ~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 323 RTLENLKHLRIT 334 (505)
T ss_pred hccchhhhhhcc
Confidence 23566666553
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=1.9e-05 Score=65.73 Aligned_cols=99 Identities=25% Similarity=0.306 Sum_probs=51.2
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEeeC
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLELSG 80 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~Ls~ 80 (290)
...+||++|.+..++. +..++.|.+|.+.+|.+...-|.--..+++|+.|.+.+|+.-+ +..+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3445566655555443 4555666666666655444333322334556666666665333 33344555666666666
Q ss_pred ccCCccCh----hhcCCccccEEeccc
Q 022917 81 HNFESLPT----GISQLQRLKCLHLIN 103 (290)
Q Consensus 81 n~l~~lp~----~l~~l~~L~~L~l~~ 103 (290)
|.++..+. -+..+++|+.||.+.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 65553332 244555566655543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=4.7e-07 Score=87.47 Aligned_cols=102 Identities=24% Similarity=0.268 Sum_probs=82.6
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccc-cCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+.|+.|+|++|+++++. .+..+++|++|||+.|.+ ..+|.- ...++ |+.|++++|...+..++.++.+|+.||+++
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 56889999999999987 588999999999999654 566631 22333 999999999977789999999999999999
Q ss_pred ccCCccCh--hhcCCccccEEecccCcC
Q 022917 81 HNFESLPT--GISQLQRLKCLHLINCNM 106 (290)
Q Consensus 81 n~l~~lp~--~l~~l~~L~~L~l~~c~~ 106 (290)
|-+....+ -+..|..|+.|+|.||..
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 98764322 356778899999999863
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-06 Score=75.71 Aligned_cols=125 Identities=23% Similarity=0.285 Sum_probs=62.7
Q ss_pred eeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCc--cccCCCCCCcEEeccCCCCCCcC---CCCCC-CCCCEE
Q 022917 4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLP--ESLCNLKKLQKLCLSQCRCLILS---GLSSL-SSLKCL 76 (290)
Q Consensus 4 L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~l~~~---~l~~l-~~L~~L 76 (290)
|+.|.|.|+.+.+ +-..|..-.+|+.|++++|+-..... --+.+++.|+.|++++|...++. .+.+. .+|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 4444444444443 33334444555555555544332211 11334555555555555433210 01111 356667
Q ss_pred EeeCcc--CC--ccChhhcCCccccEEecccCcCCccCC--C--CCcccceecccccccc
Q 022917 77 ELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIRSLP--E--LPFCLNYLNTSDCKRL 128 (290)
Q Consensus 77 ~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp--~--~~~~L~~L~l~~c~~l 128 (290)
+|+|+. +. .+..-..++++|.+|||++|..++.-- + -++.|++|.++.|-.+
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 777664 21 333334567888888888877665300 1 1356888888887643
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00014 Score=67.40 Aligned_cols=91 Identities=20% Similarity=0.360 Sum_probs=61.8
Q ss_pred ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc-cCCccChhhcCCcccc
Q 022917 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH-NFESLPTGISQLQRLK 97 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~ 97 (290)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|..++ +..+ ..+|+.|++++| .+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 445789999999998 5677772 24479999999988765 2222 358999999998 67788854 55
Q ss_pred EEecccCcCCccCCCCCcccceecccc
Q 022917 98 CLHLINCNMIRSLPELPFCLNYLNTSD 124 (290)
Q Consensus 98 ~L~l~~c~~l~~lp~~~~~L~~L~l~~ 124 (290)
.|++.+ .....++.+|++|+.|.+.+
T Consensus 116 ~L~L~~-n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKG-SATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCC-CCCcccccCcchHhheeccc
Confidence 555554 22344555556666666543
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=2.4e-05 Score=77.64 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=72.0
Q ss_pred ceeEEEcccCC-Ccc-cCcccc-CCCCCcEEeccCCCCCCc-CccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEe
Q 022917 3 LLQEIDLFLSG-IKE-LPSSIE-HIEGLKCLRLNSCTKLGF-LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLEL 78 (290)
Q Consensus 3 ~L~~L~L~~~~-l~~-lp~~i~-~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~L 78 (290)
+|+.|+++|.. +.. -|..++ .||+|+.|.+.+-.+... .-.-..++++|..||+|+++.....+++++++|+.|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 57778887742 222 333343 357888888777433221 12223467788888888877666667777777777777
Q ss_pred eCccCCccC--hhhcCCccccEEecccCcCCccC---------CCCCcccceecccc
Q 022917 79 SGHNFESLP--TGISQLQRLKCLHLINCNMIRSL---------PELPFCLNYLNTSD 124 (290)
Q Consensus 79 s~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l---------p~~~~~L~~L~l~~ 124 (290)
.+=.++.-. ..+.+|++|+.||++.-.....- +..++.|+.||.++
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 666665332 24567777777777753322111 12245666666654
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.52 E-value=3.2e-05 Score=70.28 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCc-cChhhcCCcccc
Q 022917 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFES-LPTGISQLQRLK 97 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~ 97 (290)
|..|++|+.|+|++|.+.+.-+.+|.++.+++.|.|..|+.-. -..|.++..|++|+|.+|+|+. -|..+..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 7788999999999988888888888889999999999887333 2447788889999999999884 477788888899
Q ss_pred EEecccCc
Q 022917 98 CLHLINCN 105 (290)
Q Consensus 98 ~L~l~~c~ 105 (290)
+|.+-.|.
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 99887654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=7e-06 Score=64.31 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=64.3
Q ss_pred eEEEcccCCCcccCcc---ccCCCCCcEEeccCCCCCCcCccccCC-CCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917 5 QEIDLFLSGIKELPSS---IEHIEGLKCLRLNSCTKLGFLPESLCN-LKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS 79 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~---i~~L~~L~~L~L~~~~~l~~lp~~i~~-l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls 79 (290)
..++|+.+.+-.+++. +.....|...++++|.+ ...|+.+.. .+.+.+|++++|.... |.++..++.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 3456666655444433 33445555567777544 455555543 3466777777776444 5557777777777777
Q ss_pred CccCCccChhhcCCccccEEecccCcCCccCC
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 111 (290)
.|.+...|.-+..|.+|-.|+..+|. ...||
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENA-RAEID 139 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence 77777777777777777777776644 44444
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=3e-05 Score=76.99 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCE
Q 022917 1 MELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKC 75 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~ 75 (290)
||+|+.|.+.|-.+.. +-.-..++++|..||+++++. ..+ .+++.|++|+.|.+.+=.... ..++.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 5889999999865533 444466789999999999554 444 678889999999887644222 346778999999
Q ss_pred EEeeCccCCccCh-------hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917 76 LELSGHNFESLPT-------GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR 127 (290)
Q Consensus 76 L~Ls~n~l~~lp~-------~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~ 127 (290)
||+|......-+. .-..|+.|+.||.++...-+.+-+ .-++|+.+.+.+|..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhc
Confidence 9999887554332 224588999999987554332222 124555555555443
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=3.7e-05 Score=68.76 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=72.8
Q ss_pred CceeEEEcccCCCcc--cC---ccccCCCCCcEEeccCCCCCCcC-------------ccccCCCCCCcEEeccCCCCCC
Q 022917 2 ELLQEIDLFLSGIKE--LP---SSIEHIEGLKCLRLNSCTKLGFL-------------PESLCNLKKLQKLCLSQCRCLI 63 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~--lp---~~i~~L~~L~~L~L~~~~~l~~l-------------p~~i~~l~~L~~L~Ls~~~~l~ 63 (290)
+.|++|+||.|.+.. ++ .-+..+..|++|.|.+|.+-..- ..-+..-+.|+++....|+.-.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 357777777776643 22 22455677777777776542211 1123345667777777776222
Q ss_pred ------cCCCCCCCCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc--------cCCCCCcccceecccc
Q 022917 64 ------LSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNTSD 124 (290)
Q Consensus 64 ------~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~--------~lp~~~~~L~~L~l~~ 124 (290)
-..+...+.|+.+.+..|.|. .+-..+.++++|+.|+|++|.... .+|.+ ++|+.|++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeecccc
Confidence 123445567777777777754 223456777888888888765431 23333 3677777777
Q ss_pred cc
Q 022917 125 CK 126 (290)
Q Consensus 125 c~ 126 (290)
|.
T Consensus 251 cl 252 (382)
T KOG1909|consen 251 CL 252 (382)
T ss_pred cc
Confidence 73
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.0002 Score=61.80 Aligned_cols=105 Identities=28% Similarity=0.359 Sum_probs=68.6
Q ss_pred cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCEEEeeCccCC---ccChhhcCCc
Q 022917 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKCLELSGHNFE---SLPTGISQLQ 94 (290)
Q Consensus 22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~ 94 (290)
..+..|+.|.+.++..+.. ..+-.|++|+.|.++.|..-. ..-...+++|++|++++|++. +++ .+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 3455666777766554322 123478899999999984111 122334589999999999976 443 467788
Q ss_pred cccEEecccCcCCccCC-------CCCcccceeccccccccCC
Q 022917 95 RLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDCKRLQS 130 (290)
Q Consensus 95 ~L~~L~l~~c~~l~~lp-------~~~~~L~~L~l~~c~~l~~ 130 (290)
+|..|++.+|.-.+ +- .++++|+.|+-.++..-+.
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCccc
Confidence 89999999987555 22 2357788887666554443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=4.5e-05 Score=59.84 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=52.3
Q ss_pred CCcEEeccCCCCCCcCcc---ccCCCCCCcEEeccCCCCCC-cCCCC-CCCCCCEEEeeCccCCccChhhcCCccccEEe
Q 022917 26 GLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCLI-LSGLS-SLSSLKCLELSGHNFESLPTGISQLQRLKCLH 100 (290)
Q Consensus 26 ~L~~L~L~~~~~l~~lp~---~i~~l~~L~~L~Ls~~~~l~-~~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 100 (290)
.+..++|++|.+ ..+++ .+.....|...+|++|..-. ++.+. .++.+++|++++|.+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 455667777654 22333 33345556666777776222 22222 34467778888888888888888888888888
Q ss_pred cccCcCCccCCC
Q 022917 101 LINCNMIRSLPE 112 (290)
Q Consensus 101 l~~c~~l~~lp~ 112 (290)
++.|. +...|.
T Consensus 107 l~~N~-l~~~p~ 117 (177)
T KOG4579|consen 107 LRFNP-LNAEPR 117 (177)
T ss_pred cccCc-cccchH
Confidence 87765 444444
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=5.1e-05 Score=66.17 Aligned_cols=96 Identities=24% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccCh--hhcCCccccEEec
Q 022917 24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHL 101 (290)
Q Consensus 24 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l 101 (290)
+.+.+.|++.||.+... .....|+.|+.|.||-|++.+...+..+++|++|+|..|.|.++-+ -+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 55667777877765322 1234688888888888887777788888889999999888876643 5678889999999
Q ss_pred ccCcCCccCCCC--------Ccccceec
Q 022917 102 INCNMIRSLPEL--------PFCLNYLN 121 (290)
Q Consensus 102 ~~c~~l~~lp~~--------~~~L~~L~ 121 (290)
..|.-.+.-+.- +++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 887765554431 35666665
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.68 E-value=0.00045 Score=61.93 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=80.8
Q ss_pred CceeEEEcccCCCccc-----CccccCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cCC
Q 022917 2 ELLQEIDLFLSGIKEL-----PSSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LSG 66 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-----p~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~~ 66 (290)
+.||++....|.+..- -..+...+.|+.+.++.|.+-. .+-..+..+++|+.|||.+|.... -..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4688888888877653 3336667788888888765421 122345678888888888886333 245
Q ss_pred CCCCCCCCEEEeeCccCCc-----cChhh-cCCccccEEecccCcCCccCC-------CCCcccceecccccc
Q 022917 67 LSSLSSLKCLELSGHNFES-----LPTGI-SQLQRLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDCK 126 (290)
Q Consensus 67 l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~l~~c~~l~~lp-------~~~~~L~~L~l~~c~ 126 (290)
+..+++|+.|++++|.++. +-..+ ...++|+.|.+.+|.....-- ...+.|+.|++++|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 6677788888888888762 21222 235788888888876543110 014668888888764
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0014 Score=56.58 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=65.3
Q ss_pred CccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc--cCC-ccChhhcCCccccEEecccCcC--CccCCCC--
Q 022917 41 LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH--NFE-SLPTGISQLQRLKCLHLINCNM--IRSLPEL-- 113 (290)
Q Consensus 41 lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~l~~c~~--l~~lp~~-- 113 (290)
+....-.+..|+.|.+.++...+...+..+++|+.|.++.| .+. .++.....+++|++|++++|+. +++++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 33333456778888888888777888999999999999999 444 6776677789999999999873 2344432
Q ss_pred CcccceeccccccccC
Q 022917 114 PFCLNYLNTSDCKRLQ 129 (290)
Q Consensus 114 ~~~L~~L~l~~c~~l~ 129 (290)
..+|..|++.+|....
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 3567777777775433
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.00073 Score=35.69 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=14.8
Q ss_pred ceeEEEcccCCCcccCccccC
Q 022917 3 LLQEIDLFLSGIKELPSSIEH 23 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~ 23 (290)
+|++|+|++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477777777777777776554
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.0012 Score=34.77 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=16.4
Q ss_pred CCCEEEeeCccCCccChhhcC
Q 022917 72 SLKCLELSGHNFESLPTGISQ 92 (290)
Q Consensus 72 ~L~~L~Ls~n~l~~lp~~l~~ 92 (290)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877654
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.00044 Score=61.03 Aligned_cols=123 Identities=26% Similarity=0.303 Sum_probs=90.2
Q ss_pred CceeEEEccc-CCCcc--cCccccCCCCCcEEeccCCCCCCcCccc-cCC-CCCCcEEeccCCCC-CCcCC----CCCCC
Q 022917 2 ELLQEIDLFL-SGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPES-LCN-LKKLQKLCLSQCRC-LILSG----LSSLS 71 (290)
Q Consensus 2 ~~L~~L~L~~-~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~-l~~L~~L~Ls~~~~-l~~~~----l~~l~ 71 (290)
.+|+.|+|+. +++++ +.--+.+++.|..|+++.|......-.. +.. -.+|..|+++|+.. +.... ...++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 4789999999 58887 3334788999999999999775443211 111 34789999999862 22111 34688
Q ss_pred CCCEEEeeCcc-CC-ccChhhcCCccccEEecccCcCCccCCC------CCcccceecccccc
Q 022917 72 SLKCLELSGHN-FE-SLPTGISQLQRLKCLHLINCNMIRSLPE------LPFCLNYLNTSDCK 126 (290)
Q Consensus 72 ~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~------~~~~L~~L~l~~c~ 126 (290)
+|.+|||++|. ++ ..-..+.+++.|++|.++.|-.+ +|+ ..++|.+|++.||-
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 99999999997 55 55567889999999999999743 333 24789999999984
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0076 Score=50.45 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=55.0
Q ss_pred CCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChhhcC-CccccEEecccCcCCccCCCC-----Ccccceec
Q 022917 48 LKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPEL-----PFCLNYLN 121 (290)
Q Consensus 48 l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~-l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~ 121 (290)
+.+...+||++|.......+..++.|.+|.+++|+|+.+-..+.. +++|..|.+.+|+ ++.+.++ .+.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 446778888888877778888888899999999988877555544 5678888888865 5444432 24566666
Q ss_pred cccc
Q 022917 122 TSDC 125 (290)
Q Consensus 122 l~~c 125 (290)
+.++
T Consensus 120 ll~N 123 (233)
T KOG1644|consen 120 LLGN 123 (233)
T ss_pred ecCC
Confidence 5554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00043 Score=60.50 Aligned_cols=96 Identities=23% Similarity=0.257 Sum_probs=71.4
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~L 78 (290)
.+.++|++-|+.|.++.- ...++.|+.|.|+-|++..--| +..+++|+.|.|..|.+-.+ .-+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456788999999988754 5678999999999977654433 66889999999999885543 34567889999999
Q ss_pred eCccCC-ccCh-----hhcCCccccEEe
Q 022917 79 SGHNFE-SLPT-----GISQLQRLKCLH 100 (290)
Q Consensus 79 s~n~l~-~lp~-----~l~~l~~L~~L~ 100 (290)
..|... .-+. -+.-|++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 998743 2222 356677777775
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.55 E-value=0.022 Score=49.93 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=21.5
Q ss_pred CCCCCcEEeccCCCCCCcCccc----cCCCCCCcEEeccCCC
Q 022917 23 HIEGLKCLRLNSCTKLGFLPES----LCNLKKLQKLCLSQCR 60 (290)
Q Consensus 23 ~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~Ls~~~ 60 (290)
.+++|+..+||+|.+....|+. |..-+.|.+|.+++|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4566666666666555444433 3445556666666664
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.41 E-value=0.01 Score=51.94 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=84.0
Q ss_pred CCceeEEEcccCCCcc-cCcc----ccCCCCCcEEeccCCCCCCcCccc-------------cCCCCCCcEEeccCCCCC
Q 022917 1 MELLQEIDLFLSGIKE-LPSS----IEHIEGLKCLRLNSCTKLGFLPES-------------LCNLKKLQKLCLSQCRCL 62 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~----i~~L~~L~~L~L~~~~~l~~lp~~-------------i~~l~~L~~L~Ls~~~~l 62 (290)
++.|+..+||.|.+.. .|+. |..-+.|.+|.+++|..-..-... ..+-+.|++.....|+..
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 5789999999998865 4443 566789999999997653221111 234578999998888733
Q ss_pred C------cCCCCCCCCCCEEEeeCccCC--cc----ChhhcCCccccEEecccCcCCc--------cCCCCCcccceecc
Q 022917 63 I------LSGLSSLSSLKCLELSGHNFE--SL----PTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNT 122 (290)
Q Consensus 63 ~------~~~l~~l~~L~~L~Ls~n~l~--~l----p~~l~~l~~L~~L~l~~c~~l~--------~lp~~~~~L~~L~l 122 (290)
. ...+..-..|+.+.+..|.|. .+ -..+.++.+|+.|++++|.... .+|+++ .|+.|.+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~l 249 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRL 249 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccc
Confidence 3 122333467888889888876 11 1245677889999999876432 233333 3788888
Q ss_pred cccc
Q 022917 123 SDCK 126 (290)
Q Consensus 123 ~~c~ 126 (290)
.+|-
T Consensus 250 nDCl 253 (388)
T COG5238 250 NDCL 253 (388)
T ss_pred cchh
Confidence 8873
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.33 E-value=0.0093 Score=29.30 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=8.6
Q ss_pred CceeEEEcccCCCcccC
Q 022917 2 ELLQEIDLFLSGIKELP 18 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp 18 (290)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35677777777766655
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.29 E-value=0.012 Score=28.89 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=7.3
Q ss_pred CCCEEEeeCccCCccC
Q 022917 72 SLKCLELSGHNFESLP 87 (290)
Q Consensus 72 ~L~~L~Ls~n~l~~lp 87 (290)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.74 E-value=0.15 Score=39.03 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccc
Q 022917 21 IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRL 96 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 96 (290)
+...++|+.+.+.. .. ..++ ..+.++++|+.+.+.++ ... -..+..+.+|+.+.+.+ .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44455555555553 22 2222 23445555666665543 111 23345555566666644 3333332 34445666
Q ss_pred cEEeccc
Q 022917 97 KCLHLIN 103 (290)
Q Consensus 97 ~~L~l~~ 103 (290)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 6666643
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.67 E-value=0.0054 Score=57.94 Aligned_cols=106 Identities=26% Similarity=0.342 Sum_probs=54.4
Q ss_pred CceeEEEcccC-CCcc--cCccccCCCCCcEEeccCC-CCCCcCc----cccCCCCCCcEEeccCCCCCCcCC---CC-C
Q 022917 2 ELLQEIDLFLS-GIKE--LPSSIEHIEGLKCLRLNSC-TKLGFLP----ESLCNLKKLQKLCLSQCRCLILSG---LS-S 69 (290)
Q Consensus 2 ~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~Ls~~~~l~~~~---l~-~ 69 (290)
++|+.|.+.++ .++. +-......+.|+.|++++| ......+ .....+.+|+.|+++++..++... +. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 34555555553 4443 2233455666777776652 2222111 122334666677776666433111 11 2
Q ss_pred CCCCCEEEeeCcc-CC--ccChhhcCCccccEEecccCcCC
Q 022917 70 LSSLKCLELSGHN-FE--SLPTGISQLQRLKCLHLINCNMI 107 (290)
Q Consensus 70 l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~l~~c~~l 107 (290)
+++|+.|.+.++. ++ .+-.....++.|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5567777766565 44 33334455666777777766654
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.036 Score=49.27 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred ceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCC
Q 022917 3 LLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTK 37 (290)
Q Consensus 3 ~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~ 37 (290)
.+++|||.+|.|++ +-.-+.+++.|+.|+++.|.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 34566666666654 323345566666666666544
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.014 Score=51.85 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC-cCCC-CCCCCCCEEEeeCccCC--ccChhhcCCcccc
Q 022917 24 IEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI-LSGL-SSLSSLKCLELSGHNFE--SLPTGISQLQRLK 97 (290)
Q Consensus 24 L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l-~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 97 (290)
.+.++.|||.+|.+.. .+...+.+|+.|++|+++.|+.-. +..+ ..+.+|+.|-|.|..+. ..-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4678888888876532 223345689999999999987433 3333 25568999999998854 6666788888889
Q ss_pred EEecccCc
Q 022917 98 CLHLINCN 105 (290)
Q Consensus 98 ~L~l~~c~ 105 (290)
.|.++.|+
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 88888874
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.71 E-value=0.041 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.5
Q ss_pred CCceeEEEcccCCCcccCccc
Q 022917 1 MELLQEIDLFLSGIKELPSSI 21 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i 21 (290)
|++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 567888888888888887753
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.71 E-value=0.041 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.5
Q ss_pred CCceeEEEcccCCCcccCccc
Q 022917 1 MELLQEIDLFLSGIKELPSSI 21 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i 21 (290)
|++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 567888888888888887753
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.19 E-value=0.079 Score=28.81 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=16.4
Q ss_pred CCCCCEEEeeCccCCccChhh
Q 022917 70 LSSLKCLELSGHNFESLPTGI 90 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~lp~~l 90 (290)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.19 E-value=0.079 Score=28.81 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=16.4
Q ss_pred CCCCCEEEeeCccCCccChhh
Q 022917 70 LSSLKCLELSGHNFESLPTGI 90 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~lp~~l 90 (290)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=0.045 Score=45.89 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=39.4
Q ss_pred CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCC-CCCCCCEEEeeCcc-CC-ccChhhcCCccccEE
Q 022917 26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLS-SLSSLKCLELSGHN-FE-SLPTGISQLQRLKCL 99 (290)
Q Consensus 26 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~-~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L 99 (290)
.++.++-+++.+...--+.+.++++++.|.+.+|..+. ++.++ -.++|+.|++++|. |+ .--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555655544433333345556666666666665444 12222 23456666666664 55 222345555555555
Q ss_pred eccc
Q 022917 100 HLIN 103 (290)
Q Consensus 100 ~l~~ 103 (290)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.17 E-value=0.73 Score=35.08 Aligned_cols=97 Identities=16% Similarity=0.263 Sum_probs=56.5
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L 78 (290)
++|+.+.+.. .++.++.. +..+++|+.+.+.++ +..++ ..+.++++|+.+.+.++- .+....+..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 4788888875 67777665 778889999999873 34444 456677789999997532 122455777899999999
Q ss_pred eCccCCccCh-hhcCCccccEEeccc
Q 022917 79 SGHNFESLPT-GISQLQRLKCLHLIN 103 (290)
Q Consensus 79 s~n~l~~lp~-~l~~l~~L~~L~l~~ 103 (290)
..+ +..++. .+.+. .|+.+.+..
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC
Confidence 775 665543 45665 888887764
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.93 E-value=0.11 Score=48.24 Aligned_cols=84 Identities=26% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCCcEEeccCCCCCCcCcc--ccCCCCCCcEEeccCCCCCCcCCC---C-CCCCCCEEEeeCccCC---ccChhhcCCc
Q 022917 24 IEGLKCLRLNSCTKLGFLPE--SLCNLKKLQKLCLSQCRCLILSGL---S-SLSSLKCLELSGHNFE---SLPTGISQLQ 94 (290)
Q Consensus 24 L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~~l---~-~l~~L~~L~Ls~n~l~---~lp~~l~~l~ 94 (290)
+..|+.|+.++|...+..+- -..+..+|++|-+++|+.++-..+ + +...|+.+++.++... ++-.--.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45666666666655443321 112345666666666664442111 1 3345666666655421 2322233455
Q ss_pred cccEEecccCcCC
Q 022917 95 RLKCLHLINCNMI 107 (290)
Q Consensus 95 ~L~~L~l~~c~~l 107 (290)
.|+.|.+++|..+
T Consensus 373 ~lr~lslshce~i 385 (483)
T KOG4341|consen 373 RLRVLSLSHCELI 385 (483)
T ss_pred hhccCChhhhhhh
Confidence 5666666555433
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.80 E-value=0.09 Score=49.60 Aligned_cols=106 Identities=33% Similarity=0.385 Sum_probs=74.4
Q ss_pred CCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCC-CCCC------cCCCCCCCCCCEEEeeCcc-CC--ccChhh
Q 022917 23 HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQC-RCLI------LSGLSSLSSLKCLELSGHN-FE--SLPTGI 90 (290)
Q Consensus 23 ~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~-~~l~------~~~l~~l~~L~~L~Ls~n~-l~--~lp~~l 90 (290)
..+.|+.|.+.+|..+.. +-......+.|+.|++++| .... ......+.+|+.|+++++. ++ .+..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478899999999877765 3345567899999999984 2222 2234456889999999998 66 233222
Q ss_pred cCCccccEEecccCcCCc-----cCCCCCcccceecccccccc
Q 022917 91 SQLQRLKCLHLINCNMIR-----SLPELPFCLNYLNTSDCKRL 128 (290)
Q Consensus 91 ~~l~~L~~L~l~~c~~l~-----~lp~~~~~L~~L~l~~c~~l 128 (290)
..+++|+.|.+.+|..+. .+-...+.|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 347899999988887532 12223467999999988776
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.044 Score=45.92 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=53.5
Q ss_pred eeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCc-cccC-CCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917 4 LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLP-ESLC-NLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE 77 (290)
Q Consensus 4 L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~-~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~ 77 (290)
++.++-+++.|...- +.+.+++.++.|.+.+|...+..- +.++ -.++|+.|+|++|..++- ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 566677776664411 227788999999999998765421 1122 467999999999998773 3455677888887
Q ss_pred eeCc
Q 022917 78 LSGH 81 (290)
Q Consensus 78 Ls~n 81 (290)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 7653
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.60 E-value=0.57 Score=25.67 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=13.1
Q ss_pred CCCCEEEeeCccCCccCh
Q 022917 71 SSLKCLELSGHNFESLPT 88 (290)
Q Consensus 71 ~~L~~L~Ls~n~l~~lp~ 88 (290)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777774
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.63 E-value=0.92 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=11.8
Q ss_pred CCceeEEEcccCCCccc
Q 022917 1 MELLQEIDLFLSGIKEL 17 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l 17 (290)
+++|+.|+|+.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46777777777777554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.88 E-value=0.018 Score=49.36 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCccCCccChhhcCCccccEE
Q 022917 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCL 99 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 99 (290)
+......+.||++.|.. ..+-..+..++.|..|+++.|..-. +.+++....+..+++..|+.+..|.+.+.++.++.+
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 55566777777777443 3444455566777777777665222 567777777778888888888888888888888888
Q ss_pred ecccCcC
Q 022917 100 HLINCNM 106 (290)
Q Consensus 100 ~l~~c~~ 106 (290)
++-++..
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 7776553
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.99 E-value=0.86 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=6.5
Q ss_pred CceeEEEcccCCCc
Q 022917 2 ELLQEIDLFLSGIK 15 (290)
Q Consensus 2 ~~L~~L~L~~~~l~ 15 (290)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=75.72 E-value=1.1 Score=41.74 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=74.7
Q ss_pred CceeEEEcccC-CCcc--cCccccCCCCCcEEeccCCCCCCcC--ccccCCCCCCcEEeccCCCCCCcCC-------CCC
Q 022917 2 ELLQEIDLFLS-GIKE--LPSSIEHIEGLKCLRLNSCTKLGFL--PESLCNLKKLQKLCLSQCRCLILSG-------LSS 69 (290)
Q Consensus 2 ~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~Ls~~~~l~~~~-------l~~ 69 (290)
.+|+.|.++++ .++. +..-=.+.+.|+.+++..|..+... -.--.+.+.|+.|.++.|...+-++ -..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 57899999986 4554 2222346789999999988765432 2222468899999999998655322 234
Q ss_pred CCCCCEEEeeCccCC--ccChhhcCCccccEEecccCcCCc
Q 022917 70 LSSLKCLELSGHNFE--SLPTGISQLQRLKCLHLINCNMIR 108 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~ 108 (290)
+..|+.+.|+++... ..-..+..+++|+.+++-+|....
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 567999999999843 444466778899999998887554
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.51 E-value=0.11 Score=44.67 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=65.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~ 80 (290)
+..+.||++.|.+..+-..+..++.|..|+++.| .+..+|..++.+..+..+++..|.... |.+++..+.++++++.+
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 3457788888888777777888888999999874 457788888888888888887776433 77888899999999998
Q ss_pred ccCC
Q 022917 81 HNFE 84 (290)
Q Consensus 81 n~l~ 84 (290)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 8865
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.69 E-value=4.7 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.6
Q ss_pred CCCcEEeccCCCC
Q 022917 49 KKLQKLCLSQCRC 61 (290)
Q Consensus 49 ~~L~~L~Ls~~~~ 61 (290)
++|+.|+|++|..
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 3455555555543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.76 E-value=4.8 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=8.2
Q ss_pred CceeEEEcccCCCc
Q 022917 2 ELLQEIDLFLSGIK 15 (290)
Q Consensus 2 ~~L~~L~L~~~~l~ 15 (290)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.55 E-value=4.3 Score=39.20 Aligned_cols=61 Identities=31% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCCCCcEEeccCCCCCCcCCCCC----CCCCCEEEeeCc--cCCccChhhcCC--ccccEEecccCcCCc
Q 022917 47 NLKKLQKLCLSQCRCLILSGLSS----LSSLKCLELSGH--NFESLPTGISQL--QRLKCLHLINCNMIR 108 (290)
Q Consensus 47 ~l~~L~~L~Ls~~~~l~~~~l~~----l~~L~~L~Ls~n--~l~~lp~~l~~l--~~L~~L~l~~c~~l~ 108 (290)
+.+.+..++|++|+...++.+.. .++|+.|+|++| .+...+ ++.++ ..|++|.+.+|+..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 44556666677776555444333 356777777777 333222 22222 246677777766544
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.62 E-value=0.75 Score=44.11 Aligned_cols=105 Identities=27% Similarity=0.338 Sum_probs=58.6
Q ss_pred eeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCC----cCccc----cCCCCCCcEEeccCCCCCC------c
Q 022917 4 LQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLG----FLPES----LCNLKKLQKLCLSQCRCLI------L 64 (290)
Q Consensus 4 L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~----i~~l~~L~~L~Ls~~~~l~------~ 64 (290)
+++|++..+.++. +...+.....++.++++.|.+.. .++.. +....++++|.+++|.... -
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 3445555555543 44445556777777777766531 11222 2246678888888876433 1
Q ss_pred CCCCCCCC-CCEEEeeCccCC-----ccChhhcCC-ccccEEecccCcCCc
Q 022917 65 SGLSSLSS-LKCLELSGHNFE-----SLPTGISQL-QRLKCLHLINCNMIR 108 (290)
Q Consensus 65 ~~l~~l~~-L~~L~Ls~n~l~-----~lp~~l~~l-~~L~~L~l~~c~~l~ 108 (290)
..+...++ +..|++..|.+. .+...+..+ ..++.++++.|....
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 22334444 555777777654 233344555 566777777766543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.78 E-value=14 Score=35.76 Aligned_cols=61 Identities=25% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCCcEEeccCCCCC--CcCccccCCCCCCcEEeccCC--CCCCcCCCCCC--CCCCEEEeeCccCC
Q 022917 24 IEGLKCLRLNSCTKL--GFLPESLCNLKKLQKLCLSQC--RCLILSGLSSL--SSLKCLELSGHNFE 84 (290)
Q Consensus 24 L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~--~~l~~~~l~~l--~~L~~L~Ls~n~l~ 84 (290)
.+.+..++|++|.+. ..+..--...++|+.|+|++| ..-...++..+ ..|++|-+.||.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 345555666665442 111111223566777777777 21122233333 24778888888764
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.90 E-value=57 Score=37.98 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.7
Q ss_pred EcccCCCcccCcc-ccCCCCCcEEeccCCCC
Q 022917 8 DLFLSGIKELPSS-IEHIEGLKCLRLNSCTK 37 (290)
Q Consensus 8 ~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~ 37 (290)
||++|+|+.||.. |..+.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 5889999998886 78899999999998754
Done!