Query 022917
Match_columns 290
No_of_seqs 444 out of 3942
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 7.2E-18 2.4E-22 151.7 11.9 131 1-133 103-247 (328)
2 4fcg_A Uncharacterized protein 99.7 6.8E-17 2.3E-21 145.3 12.1 121 3-125 82-216 (328)
3 4ezg_A Putative uncharacterize 99.6 2.9E-15 9.9E-20 124.7 11.2 127 2-132 44-175 (197)
4 3e6j_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 123.5 13.9 125 5-133 22-152 (229)
5 2v9t_B SLIT homolog 2 protein 99.6 1.5E-14 5.3E-19 122.6 13.2 126 5-133 14-145 (220)
6 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 123.5 14.0 130 2-133 35-172 (251)
7 2o6q_A Variable lymphocyte rec 99.6 7E-14 2.4E-18 121.8 16.7 102 3-104 38-143 (270)
8 3rfs_A Internalin B, repeat mo 99.6 6.4E-14 2.2E-18 122.3 16.1 130 1-133 62-198 (272)
9 4ezg_A Putative uncharacterize 99.6 9.1E-15 3.1E-19 121.6 9.9 123 1-126 65-192 (197)
10 1p9a_G Platelet glycoprotein I 99.6 3.8E-14 1.3E-18 125.2 13.8 132 1-136 54-192 (290)
11 3rfs_A Internalin B, repeat mo 99.6 5.9E-14 2E-18 122.5 14.8 127 1-127 84-217 (272)
12 1ogq_A PGIP-2, polygalacturona 99.6 2.9E-15 1E-19 133.6 6.4 127 1-127 75-209 (313)
13 2o6s_A Variable lymphocyte rec 99.6 8.1E-14 2.8E-18 116.6 14.8 117 6-125 11-134 (208)
14 3m19_A Variable lymphocyte rec 99.6 1.3E-13 4.3E-18 118.9 16.3 127 3-133 15-148 (251)
15 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.2E-19 117.5 9.3 128 2-133 24-164 (168)
16 2o6s_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 119.0 12.1 129 2-131 28-164 (208)
17 2v70_A SLIT-2, SLIT homolog 2 99.5 3.3E-14 1.1E-18 120.5 12.1 124 5-131 14-144 (220)
18 1ogq_A PGIP-2, polygalacturona 99.5 1.1E-14 3.8E-19 129.9 9.2 133 1-134 124-263 (313)
19 3rgz_A Protein brassinosteroid 99.5 1.4E-14 4.7E-19 144.2 10.8 137 1-137 489-702 (768)
20 2xwt_C Thyrotropin receptor; s 99.5 3.6E-14 1.2E-18 121.3 11.9 121 3-124 32-165 (239)
21 3rgz_A Protein brassinosteroid 99.5 2.1E-14 7.2E-19 142.9 12.0 138 1-138 465-679 (768)
22 1h6u_A Internalin H; cell adhe 99.5 3.6E-14 1.2E-18 126.3 11.9 118 3-125 42-161 (308)
23 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-13 4.7E-18 120.7 15.2 123 2-125 32-163 (285)
24 3zyi_A Leucine-rich repeat-con 99.5 9.2E-14 3.1E-18 129.9 14.5 130 2-132 75-212 (452)
25 1h6t_A Internalin B; cell adhe 99.5 7.9E-14 2.7E-18 123.1 12.8 119 2-125 46-166 (291)
26 1h6u_A Internalin H; cell adhe 99.5 3.5E-14 1.2E-18 126.4 10.6 127 1-133 62-190 (308)
27 2z66_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 124.2 11.9 124 2-126 78-234 (306)
28 1ozn_A Reticulon 4 receptor; N 99.5 1.2E-13 4E-18 121.2 13.4 126 1-127 55-189 (285)
29 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 119.6 14.1 132 1-134 60-199 (270)
30 3zyi_A Leucine-rich repeat-con 99.5 1.7E-13 5.7E-18 128.1 15.2 132 1-133 122-283 (452)
31 4eco_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 141.3 8.1 133 1-134 205-371 (636)
32 2z62_A TOLL-like receptor 4, v 99.5 7.8E-14 2.7E-18 121.7 12.0 103 3-105 29-135 (276)
33 3zyj_A Leucine-rich repeat-con 99.5 1.5E-13 5E-18 128.0 14.6 130 2-132 64-201 (440)
34 2z80_A TOLL-like receptor 2, v 99.5 6.6E-14 2.3E-18 126.5 11.8 126 2-127 52-186 (353)
35 1wwl_A Monocyte differentiatio 99.5 1.8E-14 6.3E-19 128.2 7.7 132 2-134 121-271 (312)
36 3zyj_A Leucine-rich repeat-con 99.5 2E-13 6.9E-18 127.1 15.1 131 1-132 111-271 (440)
37 4ecn_A Leucine-rich repeat pro 99.5 9E-14 3.1E-18 139.8 13.3 124 1-125 447-605 (876)
38 4g8a_A TOLL-like receptor 4; l 99.5 5.7E-14 2E-18 135.4 11.3 125 2-126 52-184 (635)
39 2je0_A Acidic leucine-rich nuc 99.5 2.9E-14 9.9E-19 113.0 7.5 120 2-124 17-149 (149)
40 1dce_A Protein (RAB geranylger 99.5 7.8E-14 2.7E-18 134.3 11.6 117 3-121 442-566 (567)
41 1h6t_A Internalin B; cell adhe 99.5 8.5E-14 2.9E-18 122.9 10.8 127 1-133 67-195 (291)
42 1xeu_A Internalin C; cellular 99.5 3E-13 1E-17 117.7 13.7 124 1-131 40-165 (263)
43 2wfh_A SLIT homolog 2 protein 99.5 2E-13 6.8E-18 113.4 11.9 118 5-126 13-137 (193)
44 2z66_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 121.8 11.4 126 1-126 125-259 (306)
45 2v70_A SLIT-2, SLIT homolog 2 99.5 1.9E-13 6.6E-18 115.8 11.8 125 2-126 32-164 (220)
46 1p9a_G Platelet glycoprotein I 99.5 3.6E-13 1.2E-17 118.9 13.9 128 2-133 10-165 (290)
47 2id5_A Lingo-1, leucine rich r 99.5 4.2E-13 1.4E-17 125.9 15.2 133 1-133 55-218 (477)
48 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.8E-18 113.0 9.7 121 2-126 19-151 (176)
49 3e6j_A Variable lymphocyte rec 99.5 7.8E-13 2.7E-17 112.6 15.3 124 2-126 40-170 (229)
50 2z62_A TOLL-like receptor 4, v 99.5 2.2E-13 7.6E-18 118.8 12.0 106 1-106 51-161 (276)
51 1w8a_A SLIT protein; signaling 99.5 2.7E-13 9.3E-18 112.4 11.8 120 5-126 11-137 (192)
52 2xot_A Amphoterin-induced prot 99.5 2.6E-13 8.9E-18 123.3 12.5 129 2-132 39-179 (361)
53 4eco_A Uncharacterized protein 99.5 2.9E-13 9.8E-18 132.0 13.4 133 2-136 433-586 (636)
54 3bz5_A Internalin-J, INLJ; leu 99.5 6E-13 2E-17 124.9 14.9 120 2-129 42-162 (457)
55 3vq2_A TLR4, TOLL-like recepto 99.5 4.6E-13 1.6E-17 129.1 14.5 123 3-125 33-163 (606)
56 3o53_A Protein LRIM1, AGAP0063 99.5 1.2E-13 4.2E-18 123.1 9.6 129 2-135 99-233 (317)
57 1m9s_A Internalin B; cell inva 99.5 2.1E-13 7.3E-18 132.2 11.9 120 2-125 65-185 (605)
58 3v47_A TOLL-like receptor 5B a 99.5 3.6E-13 1.2E-17 125.4 12.7 108 25-133 275-388 (455)
59 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 122.9 8.8 112 23-135 143-270 (310)
60 4glp_A Monocyte differentiatio 99.5 8.1E-14 2.8E-18 123.9 7.8 131 1-133 144-289 (310)
61 4b8c_D Glucose-repressible alc 99.5 3E-14 1E-18 141.1 5.3 111 1-112 223-334 (727)
62 1xeu_A Internalin C; cellular 99.5 4.1E-13 1.4E-17 116.8 11.9 120 1-126 62-183 (263)
63 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.6E-18 111.3 8.2 110 1-112 48-164 (168)
64 3o6n_A APL1; leucine-rich repe 99.5 5.6E-13 1.9E-17 122.0 13.3 104 2-105 69-176 (390)
65 3vq2_A TLR4, TOLL-like recepto 99.5 3.5E-13 1.2E-17 130.0 12.6 133 1-134 55-199 (606)
66 1w8a_A SLIT protein; signaling 99.5 3.9E-13 1.3E-17 111.4 11.1 110 2-111 29-143 (192)
67 1wwl_A Monocyte differentiatio 99.4 1.5E-13 5.2E-18 122.3 8.8 130 2-133 149-291 (312)
68 4fmz_A Internalin; leucine ric 99.4 3.3E-13 1.1E-17 121.3 11.1 121 2-126 44-166 (347)
69 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.3E-17 110.1 14.7 124 2-126 32-163 (220)
70 4ecn_A Leucine-rich repeat pro 99.4 8.4E-13 2.9E-17 132.7 15.1 133 2-136 673-826 (876)
71 3v47_A TOLL-like receptor 5B a 99.4 5.7E-13 1.9E-17 124.0 12.7 131 2-132 30-171 (455)
72 3oja_A Leucine-rich immune mol 99.4 2E-13 6.9E-18 129.1 9.7 128 2-134 99-232 (487)
73 2xwt_C Thyrotropin receptor; s 99.4 5.7E-13 2E-17 113.8 11.4 133 1-134 54-198 (239)
74 2z81_A CD282 antigen, TOLL-lik 99.4 4.2E-13 1.4E-17 127.8 11.7 133 2-134 26-167 (549)
75 2id5_A Lingo-1, leucine rich r 99.4 1.8E-12 6.2E-17 121.6 15.6 124 2-125 32-162 (477)
76 3bz5_A Internalin-J, INLJ; leu 99.4 1.7E-12 5.7E-17 121.9 15.2 123 1-132 63-186 (457)
77 2ft3_A Biglycan; proteoglycan, 99.4 1.7E-12 5.7E-17 116.3 14.2 130 2-134 54-190 (332)
78 2xot_A Amphoterin-induced prot 99.4 3.5E-13 1.2E-17 122.4 9.9 125 1-126 63-200 (361)
79 3o6n_A APL1; leucine-rich repe 99.4 6.2E-13 2.1E-17 121.7 11.3 125 2-132 205-334 (390)
80 1m9s_A Internalin B; cell inva 99.4 3.8E-13 1.3E-17 130.4 10.1 126 1-132 42-169 (605)
81 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.9E-17 107.7 12.8 105 2-106 31-138 (193)
82 2z7x_B TOLL-like receptor 1, v 99.4 6.1E-13 2.1E-17 126.1 11.3 133 2-135 21-160 (520)
83 3oja_B Anopheles plasmodium-re 99.4 1.2E-12 4E-17 126.7 13.3 123 1-124 74-201 (597)
84 3t6q_A CD180 antigen; protein- 99.4 1.7E-12 5.7E-17 125.2 14.3 127 1-127 277-412 (606)
85 2o6r_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 106.6 11.4 123 4-129 9-138 (177)
86 3t6q_A CD180 antigen; protein- 99.4 8.4E-13 2.9E-17 127.3 12.1 124 2-125 33-163 (606)
87 2z63_A TOLL-like receptor 4, v 99.4 1.7E-12 5.8E-17 124.0 13.7 123 3-125 29-159 (570)
88 1xku_A Decorin; proteoglycan, 99.4 1.3E-12 4.4E-17 116.9 12.0 129 1-134 144-281 (330)
89 2o6r_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 104.1 13.3 109 2-110 28-140 (177)
90 4fmz_A Internalin; leucine ric 99.4 8.8E-13 3E-17 118.5 10.8 128 1-133 198-328 (347)
91 1xku_A Decorin; proteoglycan, 99.4 6.7E-13 2.3E-17 118.7 9.6 122 1-126 75-203 (330)
92 2r9u_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 105.7 11.5 100 5-106 15-117 (174)
93 2je0_A Acidic leucine-rich nuc 99.4 2.9E-13 9.9E-18 107.2 6.4 102 1-103 41-149 (149)
94 2z80_A TOLL-like receptor 2, v 99.4 1.1E-12 3.8E-17 118.5 11.0 126 1-126 75-209 (353)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.9E-12 6.3E-17 124.2 12.9 125 2-127 52-181 (562)
96 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 104.7 11.4 102 4-107 11-115 (170)
97 2z63_A TOLL-like receptor 4, v 99.4 1.1E-12 3.7E-17 125.3 11.0 130 2-132 373-510 (570)
98 4g8a_A TOLL-like receptor 4; l 99.4 8.8E-13 3E-17 127.0 10.4 112 1-112 75-191 (635)
99 1ziw_A TOLL-like receptor 3; i 99.4 1E-12 3.5E-17 128.5 10.8 125 2-126 25-156 (680)
100 1o6v_A Internalin A; bacterial 99.4 1.8E-12 6.1E-17 121.6 11.9 100 2-105 199-298 (466)
101 2z7x_B TOLL-like receptor 1, v 99.4 1.6E-12 5.4E-17 123.2 11.7 130 1-134 323-462 (520)
102 3oja_B Anopheles plasmodium-re 99.4 1.3E-12 4.5E-17 126.3 11.2 121 4-125 234-355 (597)
103 1jl5_A Outer protein YOPM; leu 99.4 5.9E-12 2E-16 118.0 15.3 124 2-133 131-274 (454)
104 1jl5_A Outer protein YOPM; leu 99.4 6.8E-12 2.3E-16 117.6 15.5 121 3-133 112-232 (454)
105 2z81_A CD282 antigen, TOLL-lik 99.4 1.4E-12 4.7E-17 124.3 11.0 112 1-112 49-166 (549)
106 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.7E-12 1.3E-16 122.1 13.6 114 22-136 350-470 (562)
107 3cvr_A Invasion plasmid antige 99.4 2.6E-12 8.8E-17 123.6 12.4 111 3-125 60-170 (571)
108 3j0a_A TOLL-like receptor 5; m 99.4 2.3E-12 7.7E-17 129.5 12.2 124 2-125 24-158 (844)
109 1o6v_A Internalin A; bacterial 99.4 2.1E-12 7.2E-17 121.1 11.1 84 1-87 67-150 (466)
110 2ft3_A Biglycan; proteoglycan, 99.4 2E-12 6.8E-17 115.8 10.3 121 1-126 77-204 (332)
111 3j0a_A TOLL-like receptor 5; m 99.3 5.6E-12 1.9E-16 126.7 13.7 132 1-132 47-191 (844)
112 4ay9_X Follicle-stimulating ho 99.3 5.2E-12 1.8E-16 114.1 12.2 131 2-133 30-219 (350)
113 3cvr_A Invasion plasmid antige 99.3 8.5E-12 2.9E-16 120.1 13.9 118 2-133 80-197 (571)
114 3o53_A Protein LRIM1, AGAP0063 99.3 3.5E-13 1.2E-17 120.2 3.8 128 2-132 34-185 (317)
115 2ast_B S-phase kinase-associat 99.3 1.8E-13 6.2E-18 122.4 1.5 126 2-127 93-234 (336)
116 1ziw_A TOLL-like receptor 3; i 99.3 1.2E-11 4.1E-16 120.9 14.5 104 2-105 49-156 (680)
117 3oja_A Leucine-rich immune mol 99.3 6.5E-13 2.2E-17 125.6 4.8 129 2-133 34-186 (487)
118 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.6E-17 128.6 6.9 114 12-127 211-328 (727)
119 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7.1E-17 105.3 6.4 103 2-106 42-152 (176)
120 3g06_A SSPH2 (leucine-rich rep 99.3 3.4E-11 1.2E-15 117.0 14.9 118 3-133 41-158 (622)
121 3g06_A SSPH2 (leucine-rich rep 99.3 4.7E-11 1.6E-15 116.0 14.4 110 2-124 61-170 (622)
122 2ast_B S-phase kinase-associat 99.3 1.1E-12 3.7E-17 117.3 2.1 127 1-127 117-259 (336)
123 1ds9_A Outer arm dynein; leuci 99.2 5.3E-14 1.8E-18 117.0 -7.0 120 4-127 25-152 (198)
124 1dce_A Protein (RAB geranylger 99.2 3.3E-11 1.1E-15 116.0 8.9 99 1-101 462-567 (567)
125 2ifg_A High affinity nerve gro 99.2 8.2E-11 2.8E-15 105.8 9.4 101 6-107 12-116 (347)
126 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.6E-15 93.3 9.2 91 2-92 33-126 (174)
127 3g39_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 91.5 9.4 86 2-87 30-118 (170)
128 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.6E-17 108.0 -4.9 101 24-125 17-125 (198)
129 2ca6_A RAN GTPase-activating p 99.1 1.7E-11 5.8E-16 112.0 0.6 125 2-126 94-255 (386)
130 4ay9_X Follicle-stimulating ho 99.0 1.1E-09 3.7E-14 98.8 10.2 133 3-136 105-244 (350)
131 2ca6_A RAN GTPase-activating p 98.9 4.1E-10 1.4E-14 102.7 3.2 126 2-127 159-315 (386)
132 3goz_A Leucine-rich repeat-con 98.9 4.6E-10 1.6E-14 101.7 2.9 103 3-105 23-149 (362)
133 3goz_A Leucine-rich repeat-con 98.8 7.1E-10 2.4E-14 100.4 2.6 124 3-126 52-207 (362)
134 1z7x_W Ribonuclease inhibitor; 98.8 1.9E-10 6.6E-15 106.9 -3.2 126 1-126 226-381 (461)
135 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.3E-13 90.8 9.1 84 1-85 30-117 (347)
136 1z7x_W Ribonuclease inhibitor; 98.7 8.5E-10 2.9E-14 102.5 -0.7 126 1-126 255-409 (461)
137 3un9_A NLR family member X1; l 98.6 1.9E-09 6.7E-14 98.3 -1.8 123 3-125 102-249 (372)
138 2p1m_B Transport inhibitor res 98.6 3.6E-09 1.2E-13 101.3 -1.8 104 2-105 105-222 (594)
139 3ogk_B Coronatine-insensitive 98.6 2.1E-08 7.3E-13 96.0 3.5 101 22-123 217-326 (592)
140 3sb4_A Hypothetical leucine ri 98.5 1.3E-07 4.5E-12 84.3 7.8 60 1-61 48-136 (329)
141 3ogk_B Coronatine-insensitive 98.5 4.6E-08 1.6E-12 93.7 3.6 34 1-34 219-252 (592)
142 3sb4_A Hypothetical leucine ri 98.4 1E-06 3.5E-11 78.4 9.4 97 2-100 226-327 (329)
143 2p1m_B Transport inhibitor res 98.4 3E-08 1E-12 94.9 -1.1 100 1-100 129-241 (594)
144 3un9_A NLR family member X1; l 98.4 5.1E-08 1.7E-12 88.9 0.3 105 2-106 126-251 (372)
145 3e4g_A ATP synthase subunit S, 98.3 3.5E-07 1.2E-11 74.3 3.3 91 17-108 53-153 (176)
146 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.3E-12 76.3 2.0 106 20-125 31-161 (185)
147 3e4g_A ATP synthase subunit S, 98.1 9.9E-07 3.4E-11 71.7 3.1 82 3-85 62-154 (176)
148 3rw6_A Nuclear RNA export fact 98.1 1.6E-06 5.4E-11 75.3 4.4 64 47-111 168-237 (267)
149 2ra8_A Uncharacterized protein 98.1 2.1E-06 7.3E-11 77.8 5.0 121 1-125 138-289 (362)
150 2ra8_A Uncharacterized protein 97.9 5.6E-06 1.9E-10 75.0 2.9 124 1-126 171-318 (362)
151 1io0_A Tropomodulin; LRR prote 97.7 4.6E-06 1.6E-10 68.2 0.4 104 2-105 36-162 (185)
152 3rw6_A Nuclear RNA export fact 97.7 3.1E-05 1.1E-09 67.1 5.5 79 22-100 167-257 (267)
153 4fdw_A Leucine rich hypothetic 97.6 0.00045 1.5E-08 63.3 11.6 101 2-105 180-282 (401)
154 4fdw_A Leucine rich hypothetic 97.3 0.00091 3.1E-08 61.2 9.8 116 2-123 203-331 (401)
155 4h09_A Hypothetical leucine ri 96.3 0.018 6.3E-07 51.5 9.9 105 3-111 218-325 (379)
156 3rfe_A Platelet glycoprotein I 96.3 0.007 2.4E-07 46.2 5.9 53 6-60 12-66 (130)
157 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0044 1.5E-07 50.9 3.1 85 21-105 37-137 (197)
158 4fs7_A Uncharacterized protein 95.6 0.03 1E-06 50.5 7.8 80 21-103 293-375 (394)
159 4gt6_A Cell surface protein; l 95.6 0.075 2.6E-06 47.9 10.3 99 21-123 261-365 (394)
160 4h09_A Hypothetical leucine ri 95.4 0.099 3.4E-06 46.6 10.6 90 20-112 212-303 (379)
161 4gt6_A Cell surface protein; l 95.3 0.038 1.3E-06 49.8 7.5 100 2-105 265-368 (394)
162 3rfe_A Platelet glycoprotein I 94.9 0.022 7.4E-07 43.4 3.9 36 2-37 31-67 (130)
163 4fs7_A Uncharacterized protein 94.9 0.076 2.6E-06 47.8 8.1 98 2-103 71-194 (394)
164 1pgv_A TMD-1, tropomodulin TMD 94.5 0.015 5.2E-07 47.7 2.2 81 45-125 37-136 (197)
165 2lz0_A Uncharacterized protein 40.1 40 0.0014 23.7 4.5 23 12-34 6-29 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=7.2e-18 Score=151.72 Aligned_cols=131 Identities=30% Similarity=0.478 Sum_probs=76.7
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCC---------C
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLS---------S 69 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~---------~ 69 (290)
+++|++|+|++|.++.+|..++.+++|++|++++|.+. .+|..++++++|++|++++|..+. +..++ .
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 35677777777777777776777777777777776554 667667777777777777765433 22222 2
Q ss_pred CCCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917 70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
+++|+.|++++|.++.+|..++++++|+.|++++|.. ..+|.. +++|+.|++++|...+.+|.
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchhhhHH
Confidence 5555555555555555555555555555555555442 233332 24455555555555555444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=6.8e-17 Score=145.30 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=65.1
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n 81 (290)
+++.|+|++|.++.+|+.++.+++|++|++++|.+. .+|..++++++|++|++++|.... +..++.+++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 455556666555555555555566666666555443 555555555666666666554332 234555555666666655
Q ss_pred cC-CccChhhcC---------CccccEEecccCcCCccCCCC---Ccccceeccccc
Q 022917 82 NF-ESLPTGISQ---------LQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 82 ~l-~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c 125 (290)
++ ..+|..+.. +++|+.|++++|. +..+|.. +++|+.|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESS
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCC
Confidence 43 355544433 5556666665554 3355542 245555555554
No 3
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.9e-15 Score=124.67 Aligned_cols=127 Identities=23% Similarity=0.252 Sum_probs=109.6
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
++|+.|++++|.++++| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|.... +..++.+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 57999999999999999 699999999999999843 444 478899999999999998654 7889999999999999
Q ss_pred CccCC-ccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCC
Q 022917 80 GHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 80 ~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~ 132 (290)
+|.++ ..|..+..+++|+.|++++|..++.+|.+ +++|+.|++++|. +..++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH
Confidence 99998 47788999999999999999877878753 5789999999874 55555
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.4e-14 Score=123.53 Aligned_cols=125 Identities=23% Similarity=0.301 Sum_probs=78.5
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCcc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~ 82 (290)
+.++.+++.++.+|..+. ++|++|++++|.+.+..|..+..+++|+.|+|++|....+ ..++.+++|+.|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 356666666766766543 6677777777666665566666777777777777764332 335666777777777777
Q ss_pred CCccChh-hcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917 83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
++.+|.. +..+++|+.|++++|. +..+|.. +++|+.|+++++ .+..++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~ 152 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPH 152 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCT
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCH
Confidence 7666543 4667777777777655 4466643 356677777664 4455543
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.5e-14 Score=122.57 Aligned_cols=126 Identities=26% Similarity=0.318 Sum_probs=80.2
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCcc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~ 82 (290)
+.++++++.++++|..+. ++|+.|++++|.+.+..+..+..+++|+.|+|++|.... +..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 356667777777776554 567777777766555444566677777777777776433 3566777777777777777
Q ss_pred CCccChh-hcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917 83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
++.+|.. +..+++|+.|++++|......|.. +++|+.|++++| .++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 145 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAK 145 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECH
Confidence 7766654 466777777777776643333332 356777777664 3444443
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.4e-14 Score=123.51 Aligned_cols=130 Identities=27% Similarity=0.372 Sum_probs=109.7
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
++|+.|+|++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.... +..++.+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 468999999999999655 58999999999999998887777778999999999999998554 346789999999999
Q ss_pred eCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
++|.++.+|.. +..+++|+.|++++|. ++.+|. . +++|+.|++++| .+..++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 172 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH 172 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCH
Confidence 99999988765 5889999999999986 555654 2 478999999986 4555554
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=7e-14 Score=121.84 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=50.5
Q ss_pred ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
+|++|++++|.++++|. .+..+++|++|++++|.+....+..+.++++|++|++++|.... +..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45666666666666543 35556666666666654432222233455566666665555322 1223444455555555
Q ss_pred CccCCccCh-hhcCCccccEEecccC
Q 022917 80 GHNFESLPT-GISQLQRLKCLHLINC 104 (290)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~c 104 (290)
+|.++.+|. .+..+++|+.|++++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCC
Confidence 555443332 2344444444444444
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=6.4e-14 Score=122.32 Aligned_cols=130 Identities=23% Similarity=0.326 Sum_probs=90.5
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
+++|++|++++|.+++++ .++.+++|++|++++|.+.+..+..+.++++|++|++++|..... ..++.+++|++|++
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 467778888887777764 477778888888888776655555567788888888888774442 33677788888888
Q ss_pred eCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
++|.++.+|.. +..+++|+.|++++|+.. .+|. . +++|+.|++++|. +..++.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVPD 198 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc-CCccCH
Confidence 88888766654 577888888888887644 4443 2 4678888887764 444443
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=9.1e-15 Score=121.62 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=106.7
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
+++|++|++++|.++.++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|.... +..++.+++|+.|++
T Consensus 65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 578999999999888776 58999999999999999887788899999999999999998655 677889999999999
Q ss_pred eCcc-CCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917 79 SGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~ 126 (290)
++|. ++.+| .+..+++|+.|++++|. +..++.+ +++|+.|++++++
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 9998 88888 79999999999999987 5556542 5789999998754
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3.8e-14 Score=125.21 Aligned_cols=132 Identities=27% Similarity=0.275 Sum_probs=112.1
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
+++|++|+|++|.|++++.. +.+++|++|++++|.+ ..+|..+..+++|++|++++|.... +..++.+++|+.|++
T Consensus 54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 57899999999999998774 8899999999999765 5789889999999999999998555 356899999999999
Q ss_pred eCccCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCCCCCC
Q 022917 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
++|.++.+|.. +..+++|+.|++++|. ++.+|.. +++|+.|++++| .++.+|....
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~ 192 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhc
Confidence 99999988765 5789999999999977 5677752 478999999885 5777776544
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=5.9e-14 Score=122.52 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=106.4
Q ss_pred CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++|+. ++.+++|++|++++|.+.+..|..++.+++|++|++++|..... ..++.+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 57899999999999997765 78999999999999988766666688999999999999975543 3478999999999
Q ss_pred eeCccCCccChh-hcCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917 78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR 127 (290)
Q Consensus 78 Ls~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~ 127 (290)
+++|.++.+|.. ++.+++|+.|++++|...+..|.. +++|+.|++++|+.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 999999977754 689999999999998855544432 47899999988743
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=2.9e-15 Score=133.65 Aligned_cols=127 Identities=17% Similarity=0.261 Sum_probs=99.3
Q ss_pred CCceeEEEccc-CCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917 1 MELLQEIDLFL-SGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~-~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L 76 (290)
+++|++|++++ |.+++ +|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.... +..++.+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46788888885 77775 78888888888888888888877888888888888888888887442 5567788888888
Q ss_pred EeeCccCC-ccChhhcCCc-cccEEecccCcCCccCCCCC--cccceeccccccc
Q 022917 77 ELSGHNFE-SLPTGISQLQ-RLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKR 127 (290)
Q Consensus 77 ~Ls~n~l~-~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~~--~~L~~L~l~~c~~ 127 (290)
++++|.++ .+|..+..++ +|+.|++++|...+.+|..+ ..|+.|++++|.-
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l 209 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc
Confidence 88888887 7888888887 88888888887666666542 1277777777643
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=8.1e-14 Score=116.60 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=55.9
Q ss_pred EEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCccC
Q 022917 6 EIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHNF 83 (290)
Q Consensus 6 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~l 83 (290)
.++.+++.++++|..+ .++|++|++++|.+.+..+..+..+++|++|++++|....+ ..++.+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3445555555555433 23555555555544433333344555555555555543322 1244555555555555555
Q ss_pred CccChh-hcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917 84 ESLPTG-ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC 125 (290)
Q Consensus 84 ~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c 125 (290)
+.+|.. +.++++|+.|++++|. +..+|. .+++|+.|+++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 544432 3455555555555544 223332 1245555555553
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=1.3e-13 Score=118.95 Aligned_cols=127 Identities=26% Similarity=0.282 Sum_probs=104.2
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG 80 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~ 80 (290)
+.++++++++.++++|..+. ++|+.|++++|.+.+..|..+.++++|++|++++|.... +..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45789999999999998765 689999999998887777789999999999999998554 34578899999999999
Q ss_pred ccCCccCh-hhcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917 81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 81 n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
|.++.+|. .+..+++|+.|++++|. +..+|. . +++|+.|++++| .++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 148 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCH
Confidence 99997764 56889999999999986 455554 2 578999999886 5666665
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.2e-14 Score=117.52 Aligned_cols=128 Identities=28% Similarity=0.371 Sum_probs=105.0
Q ss_pred CceeEEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCC-CCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSG-LSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~-l~~l~~L~~L~ 77 (290)
++|++|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.... ++. ++.+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57999999999998 7998889999999999999886544 678899999999999998655 333 34589999999
Q ss_pred eeCccCCccC--hhhcCCccccEEecccCcCCccCCC-------CCcccceeccccccccCCCCC
Q 022917 78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 78 Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~-------~~~~L~~L~l~~c~~l~~l~~ 133 (290)
+++|.++.+| ..+..+++|+.|++++|. +..+|. .+++|+.|++++|. +..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 9999999876 688999999999999987 455554 25789999998874 444443
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.3e-14 Score=119.02 Aligned_cols=129 Identities=26% Similarity=0.317 Sum_probs=103.5
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++|.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|....+ ..++.+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 5789999999999997765 68899999999999877655455578899999999999985543 34788999999999
Q ss_pred eCccCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCC
Q 022917 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSL 131 (290)
Q Consensus 79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l 131 (290)
++|.++.+|.. +.++++|+.|++++|.. ..+|.. +++|+.|++++++.....
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCeecCC
Confidence 99999988764 68899999999999874 455542 478999999887544443
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=120.54 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=92.9
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n 81 (290)
+.++++++.++++|..+. ..++.|++++|.+.+..| ..+..+++|+.|++++|.... +..++.+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 478888888888887664 456889999887765544 346788899999998887544 346888889999999999
Q ss_pred cCCccCh-hhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCC
Q 022917 82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL 131 (290)
Q Consensus 82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l 131 (290)
.++.+|. .+..+++|+.|++++|......|.. +++|+.|++++| .++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 144 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTV 144 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence 9887765 4788889999999888755544543 467888888885 44444
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.54 E-value=1.1e-14 Score=129.86 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=94.7
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCC-CCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK-KLQKLCLSQCRCLI--LSGLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~--~~~l~~l~~L~~L 76 (290)
+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.++ +|+.|++++|.... +..++.++ |+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 4688999999999884 888899999999999999888778888888888 89999999887432 44455554 7777
Q ss_pred EeeCccCC-ccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCCCC
Q 022917 77 ELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 77 ~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~~~ 134 (290)
++++|.++ ..|..+..+++|+.|++++|...+.+|. .+++|+.|++++|.-.+.+|..
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 77777665 4555666666777777766665444443 2356666666665544345543
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.54 E-value=1.4e-14 Score=144.23 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=111.9
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----------------
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---------------- 63 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---------------- 63 (290)
+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|....
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 4789999999999985 88889999999999999999988999999999999999999886321
Q ss_pred --------------------------------------------------------cCCCCCCCCCCEEEeeCccCC-cc
Q 022917 64 --------------------------------------------------------LSGLSSLSSLKCLELSGHNFE-SL 86 (290)
Q Consensus 64 --------------------------------------------------------~~~l~~l~~L~~L~Ls~n~l~-~l 86 (290)
+..++.+++|+.|++++|.++ .+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 123455678888888888887 78
Q ss_pred ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCC
Q 022917 87 PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSC 137 (290)
Q Consensus 87 p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~ 137 (290)
|..++++++|+.|++++|...+.+|+. +++|+.|++++|.-.+.+|.....
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 888888888888888888888888864 467888888887766677765543
No 20
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=3.6e-14 Score=121.35 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=66.9
Q ss_pred ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccC-CCCCC--cCCCCCCCCCCEEE
Q 022917 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQ-CRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~-~~~l~--~~~l~~l~~L~~L~ 77 (290)
+|++|++++|.++++|+ .++.+++|++|++++|..++.+| ..+.++++|++|++++ |.... +..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56667777777766655 46666777777777665333333 3556666777777766 44222 23345556666666
Q ss_pred eeCccCCccChhhcCCcccc---EEecccCcCCccCCCC----Ccccc-eecccc
Q 022917 78 LSGHNFESLPTGISQLQRLK---CLHLINCNMIRSLPEL----PFCLN-YLNTSD 124 (290)
Q Consensus 78 Ls~n~l~~lp~~l~~l~~L~---~L~l~~c~~l~~lp~~----~~~L~-~L~l~~ 124 (290)
+++|.++.+|. +..+++|+ .|++++|..++.+|.. +++|+ .|++++
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 66666555554 44555554 5555555234444431 23445 555544
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.54 E-value=2.1e-14 Score=142.90 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=119.8
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.... +..++.+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 4789999999999996 88899999999999999999999999999999999999999998543 67889999999999
Q ss_pred eeCccCC-ccChhh------------------------------------------------------------------
Q 022917 78 LSGHNFE-SLPTGI------------------------------------------------------------------ 90 (290)
Q Consensus 78 Ls~n~l~-~lp~~l------------------------------------------------------------------ 90 (290)
+++|.++ .+|..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 9999976 666543
Q ss_pred ----cCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCC
Q 022917 91 ----SQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL 138 (290)
Q Consensus 91 ----~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~ 138 (290)
+.+++|+.|++++|+..+.+|.. ++.|+.|++++|.-.+.+|.....+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 33577999999999988899975 4789999999988777888766544
No 22
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=3.6e-14 Score=126.28 Aligned_cols=118 Identities=24% Similarity=0.322 Sum_probs=59.2
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
+|++|+++++.++++| .+..+++|++|++++|.+. .++. +..+++|++|++++|....++.++.+++|+.|++++|.
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence 4555555555555554 3555555555555555432 2333 55555555555555554444445555555555555555
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC 125 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c 125 (290)
++.+|. +..+++|+.|++++|. +..++.+ +++|+.|++++|
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCC
Confidence 554442 4555555555555543 2223221 234455555443
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1.4e-13 Score=120.70 Aligned_cols=123 Identities=24% Similarity=0.219 Sum_probs=72.0
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~ 77 (290)
++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|..++ +..++.+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 356667777776666553 36666677777776666555556666666666777666665222 34455666666666
Q ss_pred eeCccCCcc-ChhhcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC 125 (290)
Q Consensus 78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c 125 (290)
+++|.++.+ |..+.++++|+.|++++|.. ..+|. .+++|+.|++++|
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCC
Confidence 666666544 34455666666666666543 23332 1345666666554
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.53 E-value=9.2e-14 Score=129.88 Aligned_cols=130 Identities=22% Similarity=0.328 Sum_probs=95.7
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
++|++|+|++|.|+.+ |..+..+++|+.|++++|.+.+..|..+.++++|++|+|++|.... +..++.+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4688899999888885 5568888899999999888777667788888889999998887444 234777888888888
Q ss_pred eCccCCccCh-hhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~ 132 (290)
++|.++.+|. .+.++++|+.|++++|+.++.++.. +++|+.|++++| .+..+|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 212 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP 212 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc
Confidence 8888887765 5677777777777777666666642 355666666554 333343
No 25
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=7.9e-14 Score=123.13 Aligned_cols=119 Identities=29% Similarity=0.316 Sum_probs=72.5
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|+.|++++|.+++++. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|....++.++.+++|+.|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC
Confidence 356667777766666654 6666777777777665543 333 6666667777776666555555666666666666666
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC 125 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c 125 (290)
.++.++ .+..+++|+.|++++|. +..++.+ +++|+.|++++|
T Consensus 123 ~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 123 GISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred cCCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence 666653 45666666666666654 3333322 355666666654
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=3.5e-14 Score=126.36 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=109.2
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.+++++. +..+++|++|++++|.+. .+| .+..+++|+.|++++|....++.++.+++|+.|++++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 5789999999999999988 999999999999998754 455 6889999999999999977777799999999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~~ 133 (290)
|.++.++. +..+++|+.|++++|. +..++. .+++|+.|++++| .+..++.
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~ 190 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP 190 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred CccCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh
Confidence 99998885 8999999999999986 555554 3578999999886 4555554
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=5.9e-14 Score=124.22 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=60.5
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCC-------------------------CCCCcCccccCCCCCCcEEec
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC-------------------------TKLGFLPESLCNLKKLQKLCL 56 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-------------------------~~l~~lp~~i~~l~~L~~L~L 56 (290)
++|++|++++|.++++|..+..+++|++|++++| ...+..|..+..+++|++|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 4455555555555555554555555555555554 443333444444444444444
Q ss_pred cCCCCCC---cCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCC----CCcccceecccccc
Q 022917 57 SQCRCLI---LSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK 126 (290)
Q Consensus 57 s~~~~l~---~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~ 126 (290)
++|.... +..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.. ..++. .+++|+.|++++|.
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCC
Confidence 4444221 33445555555555555555533 34455555555555555442 22222 12455555555543
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.2e-13 Score=121.16 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=100.1
Q ss_pred CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L 76 (290)
+++|++|++++|.++++ |..+..+++|++|++++|..++.+ |..+..+++|++|++++|.... +..++.+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 46899999999999886 667889999999999998744555 6778889999999999987544 3557888899999
Q ss_pred EeeCccCCccCh-hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917 77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR 127 (290)
Q Consensus 77 ~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~ 127 (290)
++++|.++.+|. .++++++|+.|++++|. +..+|. .+++|+.|++++|.-
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc
Confidence 999999887765 47888899999998876 445553 246788888888653
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.6e-13 Score=119.60 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=110.3
Q ss_pred CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.... +..++.+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 57899999999999998877 5889999999999988766555667899999999999998554 34578999999999
Q ss_pred eeCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCCC
Q 022917 78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 78 Ls~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
+++|.++.+|.. +..+++|+.|++++|. +..+|. . +++|+.|++++| .++.++..
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 199 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG 199 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHH
Confidence 999999988765 7899999999999987 455554 2 478999999987 56666653
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=1.7e-13 Score=128.12 Aligned_cols=132 Identities=27% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCC-------------------------CCCCcEE
Q 022917 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCN-------------------------LKKLQKL 54 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~-------------------------l~~L~~L 54 (290)
+++|++|+|++|.++.+|+. +..+++|++|++++|.+....+..+.+ +++|+.|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 35666777777666665554 566666666666665544332333444 4455555
Q ss_pred eccCCCCCCcCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCC
Q 022917 55 CLSQCRCLILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS 130 (290)
Q Consensus 55 ~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~ 130 (290)
++++|....++.+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|......|.. +++|+.|++++| .+..
T Consensus 202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCc
Confidence 55555444445556666666666766666644 556667777777777776644433332 356777777775 4555
Q ss_pred CCC
Q 022917 131 LPK 133 (290)
Q Consensus 131 l~~ 133 (290)
++.
T Consensus 281 ~~~ 283 (452)
T 3zyi_A 281 LPH 283 (452)
T ss_dssp CCT
T ss_pred cCh
Confidence 554
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=1.4e-14 Score=141.29 Aligned_cols=133 Identities=17% Similarity=0.290 Sum_probs=108.8
Q ss_pred CCceeEEEcccCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917 1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 60 (290)
|++|++|+|++|.+++ +|+.++ .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5789999999999999 999999 99999999999999999999999999999999999997
Q ss_pred CCC----cCCCCCC------CCCCEEEeeCccCCccCh--hhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917 61 CLI----LSGLSSL------SSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (290)
Q Consensus 61 ~l~----~~~l~~l------~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~ 126 (290)
.++ |..++.+ ++|+.|++++|.++.+|. .++++++|+.|++++|...+.+|.+ +++|+.|++++|.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 332 3444444 888999999988888888 8888888888888888766577732 3567777777753
Q ss_pred ccCCCCCC
Q 022917 127 RLQSLPKI 134 (290)
Q Consensus 127 ~l~~l~~~ 134 (290)
+..+|..
T Consensus 365 -l~~lp~~ 371 (636)
T 4eco_A 365 -ITEIPAN 371 (636)
T ss_dssp -EEECCTT
T ss_pred -cccccHh
Confidence 3355543
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=7.8e-14 Score=121.71 Aligned_cols=103 Identities=27% Similarity=0.299 Sum_probs=49.9
Q ss_pred ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
+|++|++++|.+++++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.... +..++.+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35566666666655444 45555566666666554443333445555555555555554222 2234444444444444
Q ss_pred CccCCccCh-hhcCCccccEEecccCc
Q 022917 80 GHNFESLPT-GISQLQRLKCLHLINCN 105 (290)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~ 105 (290)
+|.++.++. .++++++|+.|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCc
Confidence 444443332 33444444444444433
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=1.5e-13 Score=128.04 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=86.5
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++++.|+|++|.|+.++ ..+..+++|+.|+|++|.+.+..+..+.++++|++|+|++|....+ ..+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 35777888888887754 4577788888888888776665566777788888888888764442 34677777777777
Q ss_pred eCccCCccCh-hhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~ 132 (290)
++|.++.+|. .+.++++|+.|++++|+.++.++.. +++|+.|++++| .++.+|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 201 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP 201 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc
Confidence 7777776654 4566667777777666656555541 345555555554 334444
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=126.53 Aligned_cols=126 Identities=25% Similarity=0.247 Sum_probs=101.3
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|...... .++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 468899999999988776 5888999999999998777666777888999999999998755432 2778889999999
Q ss_pred eCccCCccCh--hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917 79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR 127 (290)
Q Consensus 79 s~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~ 127 (290)
++|.++.+|. .+.++++|+.|++++|+.++.++. .+++|+.|++++|.-
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 9999888886 678889999999998866666643 246788888888653
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.8e-14 Score=128.24 Aligned_cols=132 Identities=24% Similarity=0.242 Sum_probs=63.0
Q ss_pred CceeEEEcccCCCcccCccccCC-----CCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCC--CCC
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHI-----EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGL--SSL 70 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l--~~l 70 (290)
++|++|++++|.++++|..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|.... +..+ +.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 34444444444444444434333 445555555544444344455555555555555554221 1122 555
Q ss_pred CCCCEEEeeCccCCccC---hh-hcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCC
Q 022917 71 SSLKCLELSGHNFESLP---TG-ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 71 ~~L~~L~Ls~n~l~~lp---~~-l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~ 134 (290)
++|++|++++|.++.+| .. +.++++|+.|++++|...+..|. .+++|+.|++++| .++.+|..
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~ 271 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG 271 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence 55666666666555332 11 23455666666666554333321 1355666666654 24455443
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=127.11 Aligned_cols=131 Identities=22% Similarity=0.317 Sum_probs=70.6
Q ss_pred CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCC-----------------
Q 022917 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----------------- 62 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l----------------- 62 (290)
+++|++|+|++|.|+++|. .+..+++|++|++++|.+....+..+.++++|+.|++++|..+
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 3567777777777777665 3667777777777776654433344555556666666554433
Q ss_pred --------CcCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCC
Q 022917 63 --------ILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS 130 (290)
Q Consensus 63 --------~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~ 130 (290)
.++.+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|......+.. +++|+.|++++| .++.
T Consensus 191 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 269 (440)
T 3zyj_A 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTL 269 (440)
T ss_dssp ECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCC
T ss_pred cCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCc
Confidence 333444444555555555554433 344555555555555554432222221 245666666554 3444
Q ss_pred CC
Q 022917 131 LP 132 (290)
Q Consensus 131 l~ 132 (290)
++
T Consensus 270 ~~ 271 (440)
T 3zyj_A 270 LP 271 (440)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=9e-14 Score=139.76 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCceeEEEcccCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917 1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 60 (290)
|++|++|+|++|.+++ +|+.++ .+++|++|+|++|.+.+.+|..++++++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 999988 99999999999999999999999999999999999997
Q ss_pred CCC----cC-------CCCCCCCCCEEEeeCccCCccCh--hhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917 61 CLI----LS-------GLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC 125 (290)
Q Consensus 61 ~l~----~~-------~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c 125 (290)
.++ |. .+..+++|+.|++++|.++.+|. .++++++|+.|++++|... .+|.+ +++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence 222 11 33344567777777777666666 6666666666666665533 55532 244555555554
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=5.7e-14 Score=135.36 Aligned_cols=125 Identities=28% Similarity=0.292 Sum_probs=104.8
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
+++++|+|++|.|+++|+ +|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.... +..|+++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 368999999999999875 59999999999999988766556678999999999999998544 345899999999999
Q ss_pred eCccCCccCh-hhcCCccccEEecccCcCCc-cCCCC---Ccccceecccccc
Q 022917 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c~ 126 (290)
++|+++.+|. .++++++|+.|++++|.... .+|.. +++|++|++++|.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999998876 58999999999999987433 34543 4789999998863
No 39
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.9e-14 Score=113.00 Aligned_cols=120 Identities=29% Similarity=0.352 Sum_probs=98.0
Q ss_pred CceeEEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-c-CCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-L-SGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~-~~l~~l~~L~~L~ 77 (290)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..++.+++|++|++++|.... + ..++.+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46899999999998 6998889999999999999876554 678899999999999998554 2 3344589999999
Q ss_pred eeCccCCccC--hhhcCCccccEEecccCcCCccCCC----C---Ccccceecccc
Q 022917 78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE----L---PFCLNYLNTSD 124 (290)
Q Consensus 78 Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~----~---~~~L~~L~l~~ 124 (290)
+++|.++.+| ..+..+++|+.|++++|. +..+|. . +++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999765 788999999999999986 555554 1 46788887753
No 40
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=7.8e-14 Score=134.33 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=101.7
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
.|+.|+|++|.|+++|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|....++.++.+++|+.|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 58899999999999998 999999999999998765 8999999999999999999997777789999999999999999
Q ss_pred CCcc--ChhhcCCccccEEecccCcCCccCCCC------Ccccceec
Q 022917 83 FESL--PTGISQLQRLKCLHLINCNMIRSLPEL------PFCLNYLN 121 (290)
Q Consensus 83 l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~------~~~L~~L~ 121 (290)
++.+ |..++.+++|+.|++++|...+..|.. +++|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9987 899999999999999998744433322 35566554
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=8.5e-14 Score=122.94 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.++++++ +..+++|++|++++|.+.+ +| .+..+++|+.|++++|....++.++.+++|+.|++++
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC
Confidence 5789999999999999887 9999999999999987644 44 4899999999999999877778889999999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~~ 133 (290)
|.++.+ ..+..+++|+.|++++|. +..++.+ +++|+.|++++| .++.++.
T Consensus 144 n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 144 NKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred CcCCcc-hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCC-cCCCChh
Confidence 999988 479999999999999987 4444433 478999999986 5566554
No 42
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=3e-13 Score=117.69 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=104.3
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.++++| .+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.....+.+.. ++|+.|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccC
Confidence 468999999999999998 6899999999999998765 4555 8899999999999998666666666 8999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL 131 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l 131 (290)
|.++.+| .+.++++|+.|++++|+ ++.++.+ +++|+.|++++|. +..+
T Consensus 116 N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 116 NELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp SCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC-CCBC
T ss_pred CccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc-Ccch
Confidence 9999887 68999999999999987 5566643 5789999998864 4444
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2e-13 Score=113.42 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=97.4
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCcc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~ 82 (290)
+.++++++.++++|..+. ++|+.|++++|.+ ..+|..+.++++|+.|++++|.... +..+..+++|+.|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578899999999998654 6899999999765 5788889999999999999998555 3458899999999999999
Q ss_pred CCccCh-hhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917 83 FESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK 126 (290)
Q Consensus 83 l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~ 126 (290)
++.+|. .+..+++|+.|+|++|. +..+|.. +++|+.|++++++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 997765 68899999999999977 5566642 4678888888764
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.4e-13 Score=121.84 Aligned_cols=126 Identities=27% Similarity=0.363 Sum_probs=106.2
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC-cCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L 76 (290)
+++|++|++++|.++. .|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.... +..++.+++|+.|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 4689999999999987 45568899999999999988766 578889999999999999998544 4678899999999
Q ss_pred EeeCccCCccCh-hhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917 77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK 126 (290)
Q Consensus 77 ~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~ 126 (290)
++++|.++.++. .+..+++|+.|++++|...+..|.. +++|+.|++++|+
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999999997765 6889999999999999876666643 3578888887754
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=115.77 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=105.7
Q ss_pred CceeEEEcccCCCcccCc--cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+.+++|+|++|.|+.+++ .+..+++|+.|++++|.+.+..+..+.++++|++|++++|.... +..++.+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999999743 38899999999999988877666789999999999999998655 34488999999999
Q ss_pred eeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~ 126 (290)
|++|.++.+ |..+..+++|+.|++++|...+..|.. +++|+.|++++++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999999976 678999999999999998755554654 4678999998864
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=3.6e-13 Score=118.87 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=62.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC----------------
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS---------------- 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~---------------- 65 (290)
+++++++++++.++++|..+. ++++.|++++|.+.+..|..+..+++|+.|++++|....+.
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence 445555555555555554432 45555555555544444444555555555555555433322
Q ss_pred -------CCCCCCCCCEEEeeCccCCccC-hhhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCC
Q 022917 66 -------GLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 66 -------~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~ 133 (290)
.+..+++|+.|++++|.++.+| ..+.++++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|.
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~ 165 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPA 165 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCT
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCH
Confidence 3444555555555555555444 234555555555555544 223332 1245555555553 3444443
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=4.2e-13 Score=125.92 Aligned_cols=133 Identities=26% Similarity=0.301 Sum_probs=71.6
Q ss_pred CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----------------
Q 022917 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---------------- 63 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---------------- 63 (290)
+++|++|+|++|.++++ |..+..+++|++|++++|.+.+..+..+.++++|++|++++|....
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 35566666666666664 4456666666666666655433323335556666666666655322
Q ss_pred ----------cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCcCCccCCC---CCcccceeccccccccC
Q 022917 64 ----------LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQ 129 (290)
Q Consensus 64 ----------~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~ 129 (290)
+..++.+++|+.|++++|.++.+|. .+.++++|+.|++++|......+. .+++|+.|++++|..++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 2344555555555555555555443 355555555555555543222221 13456666666665555
Q ss_pred CCCC
Q 022917 130 SLPK 133 (290)
Q Consensus 130 ~l~~ 133 (290)
.++.
T Consensus 215 ~~~~ 218 (477)
T 2id5_A 215 TMTP 218 (477)
T ss_dssp EECT
T ss_pred ccCc
Confidence 5544
No 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.1e-13 Score=112.96 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred CceeEEEcccCCCcccCccccCCC-CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-C-CCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-G-LSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~-l~~l~~L~~L~L 78 (290)
.+|+.|++++|.++++|. +..+. +|++|++++|.+.+ + ..+..+++|++|++++|....++ . ++.+++|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 578999999999988865 55554 89999999987654 3 57888999999999999754432 3 377889999999
Q ss_pred eCccCCccCh--hhcCCccccEEecccCcCCccCCCC-------Ccccceecccccc
Q 022917 79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~-------~~~L~~L~l~~c~ 126 (290)
++|.++.+|. .+..+++|+.|++++|. +..+|.. +++|+.|+++++.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999988887 78889999999999877 4566652 3567777776653
No 49
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=7.8e-13 Score=112.63 Aligned_cols=124 Identities=24% Similarity=0.232 Sum_probs=104.1
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|+|++|.|+++ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|....+ ..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5799999999999996 66699999999999999887444445578999999999999985553 34789999999999
Q ss_pred eCccCCccChhhcCCccccEEecccCcCCccCCC-C---Ccccceecccccc
Q 022917 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~ 126 (290)
++|.++.+|..+..+++|+.|++++|. +..+|. . +++|+.|++++++
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999999999999999999999986 556663 2 4678888887753
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=2.2e-13 Score=118.81 Aligned_cols=106 Identities=25% Similarity=0.286 Sum_probs=69.1
Q ss_pred CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.+++++. .+..+++|++|++++|.+.+..|..+.++++|++|++++|..... ..++.+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 3566777777777766544 466677777777777666555556666677777777777664432 2366667777777
Q ss_pred eeCccCCc--cChhhcCCccccEEecccCcC
Q 022917 78 LSGHNFES--LPTGISQLQRLKCLHLINCNM 106 (290)
Q Consensus 78 Ls~n~l~~--lp~~l~~l~~L~~L~l~~c~~ 106 (290)
+++|.++. +|..+.++++|+.|++++|..
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 77777664 566677777777777776653
No 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.7e-13 Score=112.36 Aligned_cols=120 Identities=22% Similarity=0.220 Sum_probs=97.5
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCcc-ccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n 81 (290)
+.++++++.++++|..+.. +|+.|++++|.+.+..+. .++.+++|++|++++|.... +..++.+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5789999999999987654 899999999876554443 37899999999999998554 467889999999999999
Q ss_pred cCCccCh-hhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917 82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~ 126 (290)
.++.++. .+.++++|+.|++++|...+..|.. +++|+.|++++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9997654 4889999999999998866666654 4678888887753
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=2.6e-13 Score=123.31 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=103.7
Q ss_pred CceeEEEcccCCCcccCcc-cc-CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPSS-IE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+.++.|+|++|.|++++.. +. .+++|+.|+|++|.+.+..|..+.++++|+.|+|++|.... +..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578999999999997765 54 88999999999988776666778899999999999998544 34578899999999
Q ss_pred eeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC-------CcccceeccccccccCCCC
Q 022917 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~-------~~~L~~L~l~~c~~l~~l~ 132 (290)
|++|.++.+ |..+..+++|+.|+|++|. +..+|.. +++|+.|+++++ .++.++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 999999866 5678899999999999876 5566642 578899999885 566655
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=2.9e-13 Score=132.04 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=92.3
Q ss_pred CceeEEEcccCCCcccCccc-cCCCCCcEEeccCCCCCCcCccccCCC--------CCCcEEeccCCCCCC-cCCCC--C
Q 022917 2 ELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNL--------KKLQKLCLSQCRCLI-LSGLS--S 69 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~l--------~~L~~L~Ls~~~~l~-~~~l~--~ 69 (290)
++|++|++++|.++++|..+ ..+++|+.|++++|.+. .+|..+... ++|+.|++++|.... +..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 36777777777777776653 34777777777776655 566544332 278888888776444 33444 7
Q ss_pred CCCCCEEEeeCccCCccChhhcCCccccEEecc------cCcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917 70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLI------NCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~------~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
+++|+.|++++|.++.+|..+.++++|+.|+++ +|+..+.+|.. +++|+.|++++|.- +.+|....
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 888888888888888888888888888888884 45556677754 46788888888654 77776543
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=6e-13 Score=124.89 Aligned_cols=120 Identities=22% Similarity=0.229 Sum_probs=77.6
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|++|++++|.++++| .++.+++|++|++++|.+.+ +| ++.+++|++|++++|....+ .++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCC
Confidence 56788888888887776 47778888888888776544 44 66777777777777764444 3667777777777777
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccC
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQ 129 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~ 129 (290)
.++.+| ++++++|+.|++++|... .++- ..++|+.|++++|..++
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N~l~-~l~l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTSCCS-CCCCTTCTTCCEEECTTCSCCC
T ss_pred cCCeec--CCCCCcCCEEECCCCccc-eeccccCCcCCEEECCCCCccc
Confidence 776665 666666676666665532 2331 23445555555543333
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.47 E-value=4.6e-13 Score=129.14 Aligned_cols=123 Identities=26% Similarity=0.246 Sum_probs=61.8
Q ss_pred ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
+|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|.... +..++.+++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 45555555555555433 35555555555555555444444455555555555555554322 3345555555555555
Q ss_pred CccCCccC-hhhcCCccccEEecccCcCCc-cCCCC---Ccccceeccccc
Q 022917 80 GHNFESLP-TGISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 80 ~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c 125 (290)
+|.++.+| ..++++++|++|++++|...+ .+|.. +++|++|++++|
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 55555443 345555555555555544332 33432 244555555543
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=1.2e-13 Score=123.15 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=87.6
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCC-CCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGL-SSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l-~~l~~L~~L~L 78 (290)
++|++|++++|.+++++.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.... +..+ +.+++|+.|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 4566677777777665543 36778888888877766666677778888888888886443 2333 35778888888
Q ss_pred eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCC
Q 022917 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS 135 (290)
Q Consensus 79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~ 135 (290)
++|.++.+|. ...+++|+.|++++|. +..+|.. +++|+.|++++| .++.+|...
T Consensus 177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred CCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence 8888877753 3357788888888866 4445432 367888888775 555666543
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=2.1e-13 Score=132.19 Aligned_cols=120 Identities=24% Similarity=0.265 Sum_probs=64.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|+.|+|++|.|+++|+ +..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|....++.+..+++|+.|+|++|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence 455555555555555544 555555555555555432 233 45555556666666555444455555556666666666
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCC-CCCcccceeccccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDC 125 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~c 125 (290)
.++.+ ..+..+++|+.|+|++|......| ..+++|+.|++++|
T Consensus 142 ~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 142 KITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred ccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC
Confidence 65555 345556666666666554332222 01345666666554
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=3.6e-13 Score=125.35 Aligned_cols=108 Identities=21% Similarity=0.230 Sum_probs=66.8
Q ss_pred CCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEec
Q 022917 25 EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHL 101 (290)
Q Consensus 25 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l 101 (290)
++|+.|++++|.+.+..|..++.+++|+.|++++|.... +..++.+++|+.|++++|.++.+ |..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 466777777766666666666667777777777666433 34566667777777777776644 445666677777777
Q ss_pred ccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917 102 INCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 102 ~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~ 133 (290)
++|...+..|.. +++|+.|++++| .++.++.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence 766644443432 356667777664 3444443
No 59
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=122.90 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCCccChh----hcC
Q 022917 23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFESLPTG----ISQ 92 (290)
Q Consensus 23 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~ 92 (290)
.+++|++|++++|.+.+..|..++.+++|++|++++|.... ...++.+++|++|++++|.++.+|.. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 35555555555555544444555566666666666665322 12234566666666666666655432 356
Q ss_pred CccccEEecccCcCCccCCCC------CcccceeccccccccCCCCCCC
Q 022917 93 LQRLKCLHLINCNMIRSLPEL------PFCLNYLNTSDCKRLQSLPKIS 135 (290)
Q Consensus 93 l~~L~~L~l~~c~~l~~lp~~------~~~L~~L~l~~c~~l~~l~~~~ 135 (290)
+++|++|++++|......|.. +++|+.|++++| .++.+|...
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence 677777777776654444432 246777777664 445555543
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.1e-14 Score=123.87 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=105.4
Q ss_pred CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCc--Cc--cccCCCCCCcEEeccCCCCCCcCC-----CCCC
Q 022917 1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LP--ESLCNLKKLQKLCLSQCRCLILSG-----LSSL 70 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~~~~l~~~~-----l~~l 70 (290)
+++|++|+|++|.++.++ ..++.+++|++|++++|.+.+. ++ ..++.+++|++|++++|....++. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 468999999999999865 5689999999999999987643 32 234689999999999998544322 4678
Q ss_pred CCCCEEEeeCccCCcc-ChhhcCC---ccccEEecccCcCCccCCC-CCcccceeccccccccCCCCC
Q 022917 71 SSLKCLELSGHNFESL-PTGISQL---QRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 71 ~~L~~L~Ls~n~l~~l-p~~l~~l---~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~ 133 (290)
++|++|+|++|.++.+ |..+..+ ++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch
Confidence 9999999999999965 8777776 699999999987 557886 4579999999986 4666554
No 61
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=3e-14 Score=141.07 Aligned_cols=111 Identities=24% Similarity=0.216 Sum_probs=99.8
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS 79 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls 79 (290)
+++|+.|+|++|.++.+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.... |..++.+++|++|+|+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 46799999999999999999999999999999998776 899999999999999999998555 5678899999999999
Q ss_pred CccCCccChhhcCCccccEEecccCcCCccCCC
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
+|.++.+|..++++++|+.|+|++|...+.+|.
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999999999999999999999999987666554
No 62
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=4.1e-13 Score=116.85 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=103.2
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.|+++|+ +..+++|+.|++++|.+. .+|... . ++|+.|++++|....++.++.+++|+.|++++
T Consensus 62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTT
T ss_pred CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCCChhhcCcccccEEECCC
Confidence 5789999999999999988 999999999999998764 466433 3 99999999999877778899999999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~ 126 (290)
|.++.+| .+..+++|+.|++++|.. ..++.+ +++|+.|+++++.
T Consensus 138 N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 138 NKLKSIV-MLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCCBCG-GGGGCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE
T ss_pred CcCCCCh-HHccCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc
Confidence 9999987 799999999999999874 444432 5789999998865
No 63
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.4e-13 Score=111.33 Aligned_cols=110 Identities=24% Similarity=0.242 Sum_probs=97.1
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|..... ..++.+++|+.|+
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 46899999999999999 6799999999999999998777888887899999999999986552 5788999999999
Q ss_pred eeCccCCccCh----hhcCCccccEEecccCcCCccCCC
Q 022917 78 LSGHNFESLPT----GISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 78 Ls~n~l~~lp~----~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
+++|.++.+|. .+..+++|+.|++++|. ...+|.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999998886 78999999999999986 555554
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=5.6e-13 Score=121.98 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=57.2
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|....++ .++.+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 455666666666655443 4555666666666665554444445555666666666665533322 1455566666666
Q ss_pred eCccCCccC-hhhcCCccccEEecccCc
Q 022917 79 SGHNFESLP-TGISQLQRLKCLHLINCN 105 (290)
Q Consensus 79 s~n~l~~lp-~~l~~l~~L~~L~l~~c~ 105 (290)
++|.++.++ ..+.++++|+.|++++|.
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCc
Confidence 666655443 345555666666666554
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=3.5e-13 Score=130.03 Aligned_cols=133 Identities=20% Similarity=0.138 Sum_probs=111.0
Q ss_pred CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++ |..++.+++|++|++++|.+.+..|..++++++|++|++++|.... +..++.+++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 57899999999999996 5569999999999999998877779999999999999999998554 35799999999999
Q ss_pred eeCccCC--ccChhhcCCccccEEecccCcCCccCCCCC---cc----cceeccccccccCCCCCC
Q 022917 78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPELP---FC----LNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 78 Ls~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~----L~~L~l~~c~~l~~l~~~ 134 (290)
+++|.++ .+|..++++++|++|++++|...+..|..+ .+ +..|+++++. ++.++..
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~ 199 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQ 199 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTT
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcc
Confidence 9999997 589999999999999999987655555433 22 4478888864 5555543
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=3.9e-13 Score=111.40 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=96.8
Q ss_pred CceeEEEcccCCCcccCcc--ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
.+|++|++++|.|++++.. ++.+++|++|++++|.+.+..|..+.++++|+.|+|++|.... +..++.+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3789999999999998764 8999999999999999888889999999999999999998554 34588999999999
Q ss_pred eeCccCCcc-ChhhcCCccccEEecccCcCCccCC
Q 022917 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLP 111 (290)
Q Consensus 78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp 111 (290)
|++|.++.+ |..+..+++|+.|++++|......+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999955 7789999999999999988655433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=1.5e-13 Score=122.30 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=106.4
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCc--Ccccc--CCCCCCcEEeccCCCCCCc-----CCCCCCC
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LPESL--CNLKKLQKLCLSQCRCLIL-----SGLSSLS 71 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~l~~-----~~l~~l~ 71 (290)
++|++|++++|.+++++ ..++.+++|++|++++|.+.+. +|..+ ..+++|++|++++|....+ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 78999999999999976 6799999999999999987765 34455 8899999999999985432 1234678
Q ss_pred CCCEEEeeCccCCccC--hhhcCCccccEEecccCcCCccCCCCC-cccceeccccccccCCCCC
Q 022917 72 SLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 72 ~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~~~-~~L~~L~l~~c~~l~~l~~ 133 (290)
+|+.|++++|.++..+ ..+..+++|+.|++++|. ++.+|... ++|+.|++++| .++.+|.
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChh
Confidence 9999999999998654 456778999999999987 45888744 69999999986 5666665
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=3.3e-13 Score=121.32 Aligned_cols=121 Identities=25% Similarity=0.345 Sum_probs=92.9
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|++|+++++.++.+|. +..+++|++|++++|.+. .+|. +..+++|++|++++|....++.++.+++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence 578888888888888875 788888888888887654 4554 7788888888888887666677888888888888888
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~ 126 (290)
.++.+|. +..+++|+.|++++|.....++.. +++|+.|++++|.
T Consensus 121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence 8887775 778888888888888666665543 3567777776653
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=1.6e-12 Score=110.12 Aligned_cols=124 Identities=21% Similarity=0.297 Sum_probs=105.1
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|+.|++++|.|+++|+ .+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|....+ ..+..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 478999999999999876 589999999999999998887799999999999999999986553 33788999999999
Q ss_pred eCccCCcc-ChhhcCCccccEEecccCcCCccCCC-C---Ccccceecccccc
Q 022917 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~ 126 (290)
++|.++.+ |..+..+++|+.|++++|. +..++. . +++|+.|++++++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999976 5678999999999999987 444443 2 4677888887753
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=8.4e-13 Score=132.73 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=105.0
Q ss_pred CceeEEEcccCCCcccCcccc-CCCCCcEEeccCCCCCCcCccccCCCC--------CCcEEeccCCCCCC-cCCCC--C
Q 022917 2 ELLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLK--------KLQKLCLSQCRCLI-LSGLS--S 69 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~--------~L~~L~Ls~~~~l~-~~~l~--~ 69 (290)
++|+.|+|++|.++.+|..+. .+++|+.|++++|.+. .+|..+.... +|+.|+|++|.... +..+. .
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 378888888888888888754 7889999999997665 7776655433 89999999997544 34455 8
Q ss_pred CCCCCEEEeeCccCCccChhhcCCccccEEeccc------CcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917 70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN------CNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~------c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
+++|+.|+|++|.++.+|..+..+++|+.|+|++ |...+.+|.. +++|+.|++++|.- +.+|....
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 8999999999999998999999999999999976 6667778864 47899999998754 88887643
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.44 E-value=5.7e-13 Score=124.00 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=105.4
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
++|++|+|++|.++++ |..++.+++|++|++++|...+.+ |..+.++++|++|++++|.... +..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5789999999999985 667999999999999998877565 4568899999999999998544 56788999999999
Q ss_pred eeCccCCc-cChh--hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917 78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 78 Ls~n~l~~-lp~~--l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~ 132 (290)
+++|.++. +|.. ++++++|+.|++++|...+..|.. +++|+.|++++|.--...+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 99999874 4544 888999999999998866655652 4789999998875443333
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=2e-13 Score=129.08 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=78.4
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCC-CCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLS-SLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~-~l~~L~~L~L 78 (290)
++|++|++++|.++.++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.... +..+. .+++|+.|+|
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 3566666666666665542 35667777777776666666666677777777777776433 33443 5667777777
Q ss_pred eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
++|.++.+|. ...+++|+.|++++|... .+|.. +++|+.|++++| .+..+|..
T Consensus 177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CCCccccccc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCC-cCcccchh
Confidence 7777766653 335677777777776533 33332 356777777664 34455544
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=5.7e-13 Score=113.79 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=108.4
Q ss_pred CCceeEEEcccCC-CcccCc-cccCCCCCcEEeccC-CCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCC---
Q 022917 1 MELLQEIDLFLSG-IKELPS-SIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLK--- 74 (290)
Q Consensus 1 l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~--- 74 (290)
+++|++|++++|. ++.+|+ .+..+++|++|++++ |.+.+..+..+.++++|++|++++|....++.++.+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence 4789999999996 999876 588999999999998 5554444467889999999999999866666688888888
Q ss_pred EEEeeCc-cCCccCh-hhcCCcccc-EEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917 75 CLELSGH-NFESLPT-GISQLQRLK-CLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 75 ~L~Ls~n-~l~~lp~-~l~~l~~L~-~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
.|++++| .++.+|. .+.++++|+ .|++++|. +..+|.. .++|+.|++++|..++.++..
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 9999999 8998876 488899999 99999876 4477753 257999999998777777653
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=4.2e-13 Score=127.85 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=104.5
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++ |..+..+++|++|++++|.+.+..|..++++++|++|++++|..... ..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4688999999999885 45688899999999999888777777888999999999999875442 33788899999999
Q ss_pred eCccCC--ccChhhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCC
Q 022917 79 SGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 79 s~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~ 134 (290)
++|.++ .+|..++++++|+.|++++|..++.+|. .+++|++|++++|.--+..|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 999887 4567788899999999998887777763 2467888888887544444443
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.8e-12 Score=121.58 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=102.9
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++++.|+|++|.|++++ ..+..+++|++|++++|.+.+..|..+.++++|++|+|++|....+ ..++.+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 47899999999999974 5699999999999999988877789999999999999999985543 34788999999999
Q ss_pred eCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceeccccc
Q 022917 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c 125 (290)
++|.++.+ |..+.++++|+.|++++|......|.. +++|+.|++++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 99998855 667888999999999987754443432 467788888775
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=1.7e-12 Score=121.85 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=95.4
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.++++| ++.+++|++|++++|.+.+ +| ++++++|++|++++|....+ .++.+++|+.|++++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCAR 136 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCC
Confidence 578999999999999986 8899999999999987655 44 88899999999999975554 488889999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~ 132 (290)
|.++.++ ++++++|+.|++++|..++.++- .+++|+.|++++| .++.+|
T Consensus 137 N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 137 NTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC
T ss_pred Cccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec
Confidence 9988875 77788888888888866666542 2456677776664 333343
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.43 E-value=1.7e-12 Score=116.29 Aligned_cols=130 Identities=25% Similarity=0.317 Sum_probs=95.8
Q ss_pred CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc-CCCCCCCCCCEEEee
Q 022917 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~-~~l~~l~~L~~L~Ls 79 (290)
++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|....+ ..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 468889999988888654 688889999999998887777788888899999999998875442 2222 788899998
Q ss_pred CccCCccCh-hhcCCccccEEecccCcCCc--cCCCCCc--ccceeccccccccCCCCCC
Q 022917 80 GHNFESLPT-GISQLQRLKCLHLINCNMIR--SLPELPF--CLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~--~lp~~~~--~L~~L~l~~c~~l~~l~~~ 134 (290)
+|.++.+|. .+.++++|+.|++++|.... ..|.... +|+.|++++| .++.+|..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n-~l~~l~~~ 190 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKD 190 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS-BCSSCCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC-CCCccCcc
Confidence 888887765 47888889999998876531 3333221 6777777775 35555543
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=3.5e-13 Score=122.45 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=102.7
Q ss_pred CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
+++|++|+|++|.|+++++ .+..+++|++|+|++|.+....+..+.++++|+.|+|++|.... +..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 4789999999999999775 59999999999999988766656678999999999999998554 46789999999999
Q ss_pred eeCccCCccChhh----cCCccccEEecccCcCCccCCC-C---Ccc--cceecccccc
Q 022917 78 LSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPE-L---PFC--LNYLNTSDCK 126 (290)
Q Consensus 78 Ls~n~l~~lp~~l----~~l~~L~~L~l~~c~~l~~lp~-~---~~~--L~~L~l~~c~ 126 (290)
|++|.++.+|..+ ..+++|+.|+|++|+ +..+|. . ++. ++.|++++++
T Consensus 143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999999875 679999999999976 566663 1 222 4677877653
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=6.2e-13 Score=121.67 Aligned_cols=125 Identities=18% Similarity=0.094 Sum_probs=96.9
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
++|++|++++|.++.+|.. ..++|+.|++++|.+.+. ..+..+++|+.|++++|.... +..++.+++|+.|+++
T Consensus 205 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp SSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 3567777777777776553 357899999999877543 467889999999999997444 4678889999999999
Q ss_pred CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~ 132 (290)
+|.++.+|..+..+++|+.|++++|. +..+|.. +++|+.|++++|. +..++
T Consensus 281 ~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 281 NNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp SSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence 99999888888888999999999986 5566653 4789999998864 55554
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=3.8e-13 Score=130.43 Aligned_cols=126 Identities=27% Similarity=0.316 Sum_probs=107.7
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
|++|+.|++++|.|+.+|. +..+++|+.|+|++|.+.+ +|. +..+++|+.|+|++|....++.++.+++|+.|+|++
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 4679999999999999985 9999999999999987755 444 889999999999999977788999999999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~ 132 (290)
|.++.+| .+..+++|+.|+|++|. +..++.+ +++|+.|++++|. +..++
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~~~ 169 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIV 169 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSC-CCCCG
T ss_pred CCCCCCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCc-CCCch
Confidence 9999886 68999999999999987 4455543 5789999999874 44443
No 81
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.7e-12 Score=107.69 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=92.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
++|++|++++|.|+.+|..+..+++|+.|++++|.+.+..+..+.++++|+.|+|++|.... +..++.+++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 47899999999999999889999999999999988877767789999999999999998555 3468899999999999
Q ss_pred CccCCccCh-hhcCCccccEEecccCcC
Q 022917 80 GHNFESLPT-GISQLQRLKCLHLINCNM 106 (290)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~ 106 (290)
+|.++.+|. .+..+++|+.|++++|..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999998886 478899999999999864
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=6.1e-13 Score=126.05 Aligned_cols=133 Identities=19% Similarity=0.090 Sum_probs=100.4
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
++|++|++++|.+++++ ..+..+++|++|++++|.+.+..|..++++++|++|++++|....++.. .+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 46888899988888866 4588888999999998887776688888899999999998875554444 788899999999
Q ss_pred ccCCc--cChhhcCCccccEEecccCcCCccCCCCCccc--ceeccccccc--cCCCCCCC
Q 022917 81 HNFES--LPTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR--LQSLPKIS 135 (290)
Q Consensus 81 n~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L--~~L~l~~c~~--l~~l~~~~ 135 (290)
|.++. +|..++++++|++|++++|...+.-...+++| +.|++++|.. ....|...
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred CccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccc
Confidence 98874 57888889999999998877544222234556 8888888755 34444433
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.2e-12 Score=126.71 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
+++|++|+|++|.++++|+ .++.+++|++|+|++|.+.+..|..++++++|++|+|++|....+ ..++.+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 4567778888777777554 577777888888887776665566667777888888887764442 2256777788888
Q ss_pred eeCccCCccC-hhhcCCccccEEecccCcCCccCC-CCCcccceecccc
Q 022917 78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD 124 (290)
Q Consensus 78 Ls~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~ 124 (290)
+++|.++.++ ..++++++|+.|++++|.... ++ ..+++|+.|++++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSY 201 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCS
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhccc
Confidence 8887777554 357777778888877765332 22 2234444444433
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=1.7e-12 Score=125.24 Aligned_cols=127 Identities=24% Similarity=0.248 Sum_probs=88.5
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++|+.++.+++|++|++++|.+.+..|..+..+++|++|++++|.... ...++.+++|+.|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 356777888887777777777777888888888777666666677777777777777776332 23467777788888
Q ss_pred eeCccCCcc---ChhhcCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917 78 LSGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR 127 (290)
Q Consensus 78 Ls~n~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~ 127 (290)
+++|.++.+ |..+..+++|+.|++++|......|.. +++|+.|++++|..
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 887777644 556777777777777777654444432 35677777776643
No 85
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.3e-12 Score=106.56 Aligned_cols=123 Identities=26% Similarity=0.271 Sum_probs=98.3
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGH 81 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n 81 (290)
.+.+++++++++++|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|....+ ..++.+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357889999999998765 37999999999887655555678899999999999985543 33788999999999999
Q ss_pred cCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccC
Q 022917 82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQ 129 (290)
Q Consensus 82 ~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~ 129 (290)
.++.+|.. +..+++|+.|++++|. ++.+|.. +++|+.|++++++-..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99988764 6889999999999986 4566642 4789999998875433
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=8.4e-13 Score=127.32 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=95.7
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
+++++|++++|.|+++ |..++.+++|++|++++|.+.+..|..++++++|++|++++|.... +..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3578888888888886 5568888888899988888777778888888888888888887443 456788888888888
Q ss_pred eCccCCcc-ChhhcCCccccEEecccCcCCc-cCCCC--Ccccceeccccc
Q 022917 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIR-SLPEL--PFCLNYLNTSDC 125 (290)
Q Consensus 79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~-~lp~~--~~~L~~L~l~~c 125 (290)
++|.++.+ |..++++++|++|++++|...+ .+|.. .++|+.|++++|
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 88888866 5567888888888888876443 23443 467777877765
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=124.01 Aligned_cols=123 Identities=28% Similarity=0.299 Sum_probs=84.5
Q ss_pred ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS 79 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls 79 (290)
+++.|++++|.++++++ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.... +..++.+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 57778888887777544 47777888888888776655555667777788888887776433 3457777777777777
Q ss_pred CccCCccCh-hhcCCccccEEecccCcCCc-cCCCC---Ccccceeccccc
Q 022917 80 GHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c 125 (290)
+|.++.+|. .++++++|++|++++|.... .+|.. +++|+.|++++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 777776654 46777777777777766443 35543 356777777665
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.41 E-value=1.3e-12 Score=116.86 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=105.4
Q ss_pred CCceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCE
Q 022917 1 MELLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKC 75 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~ 75 (290)
+++|++|++++|.++. .+..+..+++|+.|++++|.+ ..+|..+. ++|+.|++++|.... +..++.+++|+.
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 5789999999999874 566689999999999999775 45776654 899999999998544 467889999999
Q ss_pred EEeeCccCCccCh-hhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917 76 LELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 76 L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
|++++|.++.++. .+..+++|+.|++++|. +..+|.. .++|+.|++++| .++.++..
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 9999999997654 78999999999999986 5578764 478999999886 46666553
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=3.2e-12 Score=104.11 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=78.5
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++|.. ++.+++|++|++++|.+.+..+..+..+++|+.|++++|..... ..++.+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4678888888888876654 57788888888888766544444567788888888888874442 33677788888888
Q ss_pred eCccCCccChh-hcCCccccEEecccCcCCccC
Q 022917 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSL 110 (290)
Q Consensus 79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l 110 (290)
++|.++.+|.. +..+++|+.|++++|......
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888877765 467788888888887654433
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=8.8e-13 Score=118.49 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=106.0
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|+.|++++|.+++++. +..+++|+.|++++|...+ ++. +..+++|+.|++++|....++.+..+++|+.|++++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence 4689999999999998776 8889999999999987654 444 889999999999999876677788999999999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCC---CCcccceeccccccccCCCCC
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~~l~~ 133 (290)
|.++.+| .+..+++|+.|++++|......|. .+++|+.|++++|. +..++.
T Consensus 275 n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 275 NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 9999885 588899999999999886555544 25789999999986 444443
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=6.7e-13 Score=118.70 Aligned_cols=122 Identities=22% Similarity=0.332 Sum_probs=88.2
Q ss_pred CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++ |..++.+++|++|++++|.+ ..+|..+. ++|+.|++++|..... ..++.+++|+.|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 47899999999999986 77799999999999999765 46776554 6788888888764432 2366777777777
Q ss_pred eeCccCC---ccChhhcCCccccEEecccCcCCccCCC-CCcccceecccccc
Q 022917 78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCK 126 (290)
Q Consensus 78 Ls~n~l~---~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~ 126 (290)
+++|.++ ..+..+.++++|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc
Confidence 7777765 345567777777777777765 445554 34667777776653
No 92
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.9e-12 Score=105.69 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=87.4
Q ss_pred eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCcc
Q 022917 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~ 82 (290)
+.++++++.++++|..+. ++|+.|++++|.+.+..|..+.++++|+.|+|++|....+ ..++.+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 578999999999998775 8999999999988777788899999999999999985553 236889999999999999
Q ss_pred CCccChh-hcCCccccEEecccCcC
Q 022917 83 FESLPTG-ISQLQRLKCLHLINCNM 106 (290)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~c~~ 106 (290)
++.+|.. +..+++|+.|++++|..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 9988875 88999999999999863
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=2.9e-13 Score=107.17 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=91.4
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|..... ..++.+++|+.|+
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 47899999999999999 6699999999999999998777888888899999999999986552 7789999999999
Q ss_pred eeCccCCccCh----hhcCCccccEEeccc
Q 022917 78 LSGHNFESLPT----GISQLQRLKCLHLIN 103 (290)
Q Consensus 78 Ls~n~l~~lp~----~l~~l~~L~~L~l~~ 103 (290)
+++|.++.+|. .+..+++|+.|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998876 689999999999864
No 94
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=118.46 Aligned_cols=126 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---CCCCCCCCCEE
Q 022917 1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS---GLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~---~l~~l~~L~~L 76 (290)
+++|++|++++|.+++++ ..++.+++|++|++++|.+.+..+..++++++|++|++++|....++ .++.+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 478999999999999864 55889999999999998765443444888999999999999755533 47888999999
Q ss_pred EeeCcc-CCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917 77 ELSGHN-FESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 77 ~Ls~n~-l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~ 126 (290)
++++|+ ++.+ |..+.++++|+.|++++|...+..|.. +++|++|++++|.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 999984 7765 457888899999999988765555543 3567778887754
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=1.9e-12 Score=124.19 Aligned_cols=125 Identities=21% Similarity=0.165 Sum_probs=81.6
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
++|++|++++|.|+++| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|....++.. .+++|++|++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 45677777777777765 3577777777777777766655566677777777777777764444333 677777777777
Q ss_pred ccCCcc--ChhhcCCccccEEecccCcCCccCCCCCccc--ceeccccccc
Q 022917 81 HNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR 127 (290)
Q Consensus 81 n~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L--~~L~l~~c~~ 127 (290)
|.++.+ |..++++++|++|++++|.....-...+++| +.|++++|..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 777654 3567777777777777765433211122344 7777766543
No 96
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.3e-12 Score=104.75 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=89.1
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGH 81 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n 81 (290)
.+.|+++++.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|....+ ..+..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4689999999999998764 8999999999988877788899999999999999985553 34689999999999999
Q ss_pred cCCccCh-hhcCCccccEEecccCcCC
Q 022917 82 NFESLPT-GISQLQRLKCLHLINCNMI 107 (290)
Q Consensus 82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l 107 (290)
.++.+|. .+.++++|+.|++++|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9998876 4889999999999998744
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=125.32 Aligned_cols=130 Identities=25% Similarity=0.385 Sum_probs=80.1
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++|+.+..+++|+.|++++|...+..| ..+.++++|++|++++|.... +..++.+++|+.|++
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 45556666666555555556666666666666655544433 345566667777776665332 345666777777777
Q ss_pred eCccCC--ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917 79 SGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 79 s~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~ 132 (290)
++|.++ .+|..+..+++|+.|++++|...+..|.. +++|+.|++++| .+..++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 777765 46777777777777777777655544543 356777777775 344443
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=8.8e-13 Score=127.03 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=95.3
Q ss_pred CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
|++|++|+|++|.|+++|+ .|+.+++|++|+|++|.+.+..+..+.++++|++|++++|....+ ..++.+++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 5789999999999999876 489999999999999876554456789999999999999985553 4589999999999
Q ss_pred eeCccCC--ccChhhcCCccccEEecccCcCCccCCC
Q 022917 78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 78 Ls~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
+++|.++ .+|..++.+++|++|++++|+..+..|.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9999987 5678899999999999999875444343
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=1e-12 Score=128.50 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=102.8
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++|+. ++.+++|++|++++|.+.+..|..++++++|++|++++|....++ .++.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4688999999999997764 889999999999998888777888888999999999998755533 4888999999999
Q ss_pred eCccCCccC-hhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917 79 SGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 79 s~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~ 126 (290)
++|.++.+| ..++++++|++|++++|...+..|.. +++|+.|++++|.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 999988776 57889999999999998766555543 4678888888763
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.39 E-value=1.8e-12 Score=121.58 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=48.7
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|++|++++|.++++++ ++.+++|+.|++++|...+ ++ .+..+++|+.|++++|.......++.+++|+.|++++|
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred CCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence 456666666666555443 4555555555555544322 22 34445555555555554333333444444444444444
Q ss_pred cCCccChhhcCCccccEEecccCc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~ 105 (290)
.++.+|. +..+++|+.|++++|.
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSC
T ss_pred ccCcccc-ccCCCccCeEEcCCCc
Confidence 4444433 4444444444444443
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=123.23 Aligned_cols=130 Identities=23% Similarity=0.253 Sum_probs=110.3
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC-c--CCCCCCCCCC
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI-L--SGLSSLSSLK 74 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~-~--~~l~~l~~L~ 74 (290)
+++|++|++++|.+++ +|..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.... + ..+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4789999999999998 88889999999999999998875 667789999999999999998654 2 2478899999
Q ss_pred EEEeeCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917 75 CLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (290)
Q Consensus 75 ~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~ 134 (290)
.|++++|.++ .+|..+. ++|+.|++++|+ +..+|.. +++|+.|++++| .++.+|..
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 9999999986 6665554 799999999986 5588863 578999999997 57778765
No 102
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=1.3e-12 Score=126.33 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=55.3
Q ss_pred eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~ 82 (290)
|+.|+|++|.+++. +.++.+++|+.|++++|.+.+..|..++.+++|+.|+|++|.... +..++.+++|+.|+|++|.
T Consensus 234 L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 234 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 34444444444432 224445555555555554444444445555555555555544222 2223344555555555555
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccc
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDC 125 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c 125 (290)
++.+|..+..+++|+.|++++|.....-+..+++|+.|++++|
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence 5555544555555555555554422221122344555555443
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=5.9e-12 Score=117.99 Aligned_cols=124 Identities=25% Similarity=0.359 Sum_probs=73.2
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCC----------
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLS---------- 71 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~---------- 71 (290)
++|++|++++|.++++| .++.+++|++|++++|.+.+ +|..+ .+|++|++++|....++.++.++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 46777777777777777 47777777777777765433 44321 24445555444433332333333
Q ss_pred ----------CCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917 72 ----------SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 72 ----------~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~ 133 (290)
+|+.|++++|.++.+| .++.+++|+.|++++|. +..+|..+++|+.|++++|. ++.+|.
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSC-CSCCCC
T ss_pred cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCc-ccccCc
Confidence 5555555555555566 36677777777777765 44566666677777776653 444444
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=6.8e-12 Score=117.56 Aligned_cols=121 Identities=22% Similarity=0.286 Sum_probs=89.4
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
+|++|++++|.++++|.. .++|++|++++|.+.+ +| .++++++|++|++++|....++. ...+|++|++++|.
T Consensus 112 ~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQ 184 (454)
T ss_dssp TCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC
T ss_pred CCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCc
Confidence 444555555555444431 1578888888876654 77 58889999999999987444332 23589999999999
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~ 133 (290)
++.+| .++++++|+.|++++|. +..+|..+++|+.|++++| .++.+|.
T Consensus 185 l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~ 232 (454)
T 1jl5_A 185 LEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELPE 232 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred CCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCcccc
Confidence 99888 68999999999999976 5568888888999998886 4556664
No 105
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=1.4e-12 Score=124.26 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEE
Q 022917 1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L 76 (290)
+++|++|++++|.+++++ ..++.+++|++|++++|.+.+..|..++++++|++|++++|.... +..++.+++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 578999999999999965 569999999999999988877666679999999999999998543 3568899999999
Q ss_pred EeeCcc-CCccC-hhhcCCccccEEecccCcCCccCCC
Q 022917 77 ELSGHN-FESLP-TGISQLQRLKCLHLINCNMIRSLPE 112 (290)
Q Consensus 77 ~Ls~n~-l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~ 112 (290)
++++|. +..+| ..+.++++|+.|++++|...+.+|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 999998 66776 4788999999999999886665554
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=3.7e-12 Score=122.10 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=82.2
Q ss_pred cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc----CCCCCCCCCCEEEeeCccCCc-cChh-hcCCcc
Q 022917 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL----SGLSSLSSLKCLELSGHNFES-LPTG-ISQLQR 95 (290)
Q Consensus 22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~----~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~ 95 (290)
+.+++|++|++++|.+.+..|..++++++|+.|++++|....+ ..++.+++|+.|++++|.++. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5677888888888877777777788888888888888764432 346777888888888888775 7654 667778
Q ss_pred ccEEecccCcCCccCCCCC-cccceeccccccccCCCCCCCC
Q 022917 96 LKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 96 L~~L~l~~c~~l~~lp~~~-~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
|+.|++++|...+.+|..+ ++|+.|++++| .++.+|....
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~ 470 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT 470 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc
Confidence 8888888877666666544 57778887776 5666665443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2.6e-12 Score=123.64 Aligned_cols=111 Identities=24% Similarity=0.334 Sum_probs=59.1
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
+|+.|++++|.|+++|..+. ++|+.|++++|.+. .+| ..+++|++|++++|....++.++. +|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence 45666666666666665542 56666666665443 455 335566666666665333322222 55555555555
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccc
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDC 125 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c 125 (290)
++.+|. .+++|+.|++++|. +..+|..+++|+.|++++|
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN 170 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence 555554 34555555555544 3334544445555555543
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.37 E-value=2.3e-12 Score=129.55 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=78.3
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~ 77 (290)
++|++|+|++|.|+++ |..+..+++|++|++++|...+.+ |..+.++++|++|+|++|.... +..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5677778887777774 555777777777777777555555 5567777777777777776433 45566666666666
Q ss_pred eeCccCCc-cChh--hcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917 78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC 125 (290)
Q Consensus 78 Ls~n~l~~-lp~~--l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c 125 (290)
|++|.++. +|.. ++++++|++|++++|...+..+. .+++|+.|++++|
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66666653 4443 66666666666666654333221 1355666666654
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.37 E-value=2.1e-12 Score=121.05 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=55.4
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+++|++|++++|.++++|+ ++.+++|++|++++|...+. +. ++++++|++|++++|.....+.++.+++|++|++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCC
Confidence 3567777777777777665 66777777777777655433 33 667777777777777655444566777777777777
Q ss_pred ccCCccC
Q 022917 81 HNFESLP 87 (290)
Q Consensus 81 n~l~~lp 87 (290)
|.++.+|
T Consensus 144 n~l~~~~ 150 (466)
T 1o6v_A 144 NTISDIS 150 (466)
T ss_dssp EEECCCG
T ss_pred CccCCCh
Confidence 7666554
No 110
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=2e-12 Score=115.82 Aligned_cols=121 Identities=22% Similarity=0.364 Sum_probs=92.4
Q ss_pred CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~ 77 (290)
+++|++|++++|.++++ |..++.+++|++|++++|.+ ..+|..+. ++|++|++++|..... ..++.+++|+.|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 47899999999999996 66799999999999999765 46777664 7899999999875543 3377888999999
Q ss_pred eeCccCC---ccChhhcCCccccEEecccCcCCccCCC-CCcccceecccccc
Q 022917 78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCK 126 (290)
Q Consensus 78 Ls~n~l~---~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~ 126 (290)
+++|.++ ..|..+..+ +|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNK 204 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCc
Confidence 9998876 345566666 78888888866 445664 34677777777753
No 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=5.6e-12 Score=126.68 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=106.4
Q ss_pred CCceeEEEcccCC-Cccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCC--CCCCCCCC
Q 022917 1 MELLQEIDLFLSG-IKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSG--LSSLSSLK 74 (290)
Q Consensus 1 l~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~--l~~l~~L~ 74 (290)
+++|++|+|++|. +..+ |..++++++|++|+|++|.+.+..|..++++++|++|+|++|.... +.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999984 4556 6679999999999999999888889999999999999999998554 443 88999999
Q ss_pred EEEeeCccCCcc--ChhhcCCccccEEecccCcCCccCCCCC-----cccceeccccccccCCCC
Q 022917 75 CLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELP-----FCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 75 ~L~Ls~n~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~~-----~~L~~L~l~~c~~l~~l~ 132 (290)
+|++++|.++.+ +..++++++|+.|++++|......|..+ ++|+.|++++|......+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 999999999855 3578999999999999987655555432 567777777765444333
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=5.2e-12 Score=114.15 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=83.9
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc--------------------------ccCCCCCCcEE
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE--------------------------SLCNLKKLQKL 54 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--------------------------~i~~l~~L~~L 54 (290)
+++++|+|++|.|+++|+. |..+++|++|+|++|...+.+|. .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4688999999999998864 78899999999998876554442 23445555666
Q ss_pred eccCCCCCCc---------------------------CCCCCC-CCCCEEEeeCccCCccChhhcCCccccEEecccCcC
Q 022917 55 CLSQCRCLIL---------------------------SGLSSL-SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNM 106 (290)
Q Consensus 55 ~Ls~~~~l~~---------------------------~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~ 106 (290)
++++|..... ..+..+ ..++.|++++|.++.+|..+....+|+.|++.+|+.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 5555542220 112222 245666666666666666655566666777766666
Q ss_pred CccCCCC----CcccceeccccccccCCCCC
Q 022917 107 IRSLPEL----PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 107 l~~lp~~----~~~L~~L~l~~c~~l~~l~~ 133 (290)
++.+|.. +++|+.|+++++ .++.+|.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~ 219 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRT-RIHSLPS 219 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred ccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence 6666642 356777777664 5666665
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=8.5e-12 Score=120.06 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=78.5
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|++|+|++|.|+.+| ..+++|+.|++++|.+.+ +|. +.+ +|+.|++++|....++. .+++|+.|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCC
Confidence 46778888888887777 346778888888776544 666 544 77777777776444443 5667777777777
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~ 133 (290)
.++.+|. .+++|+.|++++|. ++.+|.+.++|+.|++++| .++.+|.
T Consensus 151 ~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 151 QLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred ccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC-CCCchhh
Confidence 7777665 45677777777765 4446664466777777664 4555555
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=3.5e-13 Score=120.19 Aligned_cols=128 Identities=19% Similarity=0.096 Sum_probs=85.2
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---------------
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--------------- 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--------------- 65 (290)
++|++|++++|.+++++ ..+..+++|++|++++|.+.+..| +..+++|++|++++|......
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 57899999999999976 468999999999999988765443 888999999999988632210
Q ss_pred ---CCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCC
Q 022917 66 ---GLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLP 132 (290)
Q Consensus 66 ---~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~ 132 (290)
....+++|+.|++++|.++.++. .+..+++|+.|++++|......+. .+++|+.|++++|. ++.++
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 185 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence 01234556666666666665433 556666777777777654433222 13566677776643 44443
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=1.8e-13 Score=122.36 Aligned_cols=126 Identities=25% Similarity=0.237 Sum_probs=73.0
Q ss_pred CceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCE
Q 022917 2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKC 75 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~ 75 (290)
++|++|++++|.++. +|..+..+++|++|++++|...+..|..++.+++|++|++++|..++ +..++.+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 456666666666553 55556666666666666665555555566666666666666664333 122445666666
Q ss_pred EEeeCc-cCCc--cChhhcCCc-cccEEecccCc-CC--ccCCCC---Ccccceeccccccc
Q 022917 76 LELSGH-NFES--LPTGISQLQ-RLKCLHLINCN-MI--RSLPEL---PFCLNYLNTSDCKR 127 (290)
Q Consensus 76 L~Ls~n-~l~~--lp~~l~~l~-~L~~L~l~~c~-~l--~~lp~~---~~~L~~L~l~~c~~ 127 (290)
|++++| .++. ++..+..++ +|+.|++++|. .+ ..+|.. .++|+.|++++|..
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 666666 5652 555566666 66666666663 12 223321 35566666666653
No 116
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.33 E-value=1.2e-11 Score=120.88 Aligned_cols=104 Identities=22% Similarity=0.202 Sum_probs=49.7
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L 78 (290)
++|++|++++|.++++ |..++.+++|++|++++|.+.+..+..++++++|++|++++|.... +..++.+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 3455555555555553 3335555555555555544332222235555555555555554322 123445555555555
Q ss_pred eCccCCcc-ChhhcCCccccEEecccCc
Q 022917 79 SGHNFESL-PTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~ 105 (290)
++|.++.+ |..++++++|+.|++++|.
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCCcccccCchhhcccccCCEEEccCCc
Confidence 55554422 3334445555555555443
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=6.5e-13 Score=125.59 Aligned_cols=129 Identities=19% Similarity=0.088 Sum_probs=90.9
Q ss_pred CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---------------
Q 022917 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--------------- 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--------------- 65 (290)
++|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..| ++.+++|++|++++|....++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 47999999999999965 569999999999999988766554 889999999999988632211
Q ss_pred ---CCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCCC
Q 022917 66 ---GLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 66 ---~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~~ 133 (290)
....+++|+.|++++|.++.+ |..++.+++|+.|++++|...+..|.. +++|+.|++++|. +..++.
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~ 186 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG 186 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc
Confidence 012345677777777777644 446677777777777777655544432 3567777777653 444433
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=1.6e-12 Score=128.60 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCccCCccChhh
Q 022917 12 SGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHNFESLPTGI 90 (290)
Q Consensus 12 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~l~~lp~~l 90 (290)
|.+...|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.... +..++.+++|+.|+|++|.|+.+|..+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 333334666889999999999998765 889889999999999999998555 456889999999999999999999999
Q ss_pred cCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917 91 SQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR 127 (290)
Q Consensus 91 ~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~ 127 (290)
+++++|++|+|++|. ++.+|.. +++|+.|++++|.-
T Consensus 290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 999999999999986 6788874 46899999988753
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.1e-12 Score=105.31 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=89.7
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccc-cCCCCCCcEEeccCCCCCCcC---CCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILS---GLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~l~~~---~l~~l~~L~~L~ 77 (290)
++|++|++++|.|+++ +.++.+++|++|++++|.+. .+|.. +..+++|++|++++|.....+ .++.+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 4899999999999999 56999999999999998765 45544 488999999999999865533 578899999999
Q ss_pred eeCccCCccChh----hcCCccccEEecccCcC
Q 022917 78 LSGHNFESLPTG----ISQLQRLKCLHLINCNM 106 (290)
Q Consensus 78 Ls~n~l~~lp~~----l~~l~~L~~L~l~~c~~ 106 (290)
+++|.++.+|.. +..+++|+.|++++|..
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999985 89999999999998763
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=3.4e-11 Score=116.99 Aligned_cols=118 Identities=25% Similarity=0.260 Sum_probs=77.5
Q ss_pred ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~ 82 (290)
+++.|+++++.++.+|..+. ++|+.|++++|.+ ..+|. .+++|++|++++|....++. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCc
Confidence 46777888777777777665 6777888877654 35665 56777777777776444333 56677777777777
Q ss_pred CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (290)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~ 133 (290)
++.+|. .+++|+.|++++|+ +..+|..+++|++|++++| .++.+|.
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCC-cCCCcCC
Confidence 777665 45666667766654 5556666666666666665 3444443
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=4.7e-11 Score=116.02 Aligned_cols=110 Identities=23% Similarity=0.196 Sum_probs=77.1
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n 81 (290)
++|++|++++|.|+.+|. .+++|++|++++|.+ ..+|. .+++|++|++++|....++. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCC
Confidence 468888888888888887 568888888888764 45665 67888888888887544333 5567777777777
Q ss_pred cCCccChhhcCCccccEEecccCcCCccCCCCCcccceecccc
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~ 124 (290)
.++.+|.. +++|+.|++++|. +..+|..+.+|+.|++++
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYN 170 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred CCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCC
Confidence 77777653 3667777777664 445565555555555554
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=1.1e-12 Score=117.30 Aligned_cols=127 Identities=23% Similarity=0.297 Sum_probs=103.2
Q ss_pred CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC----cCCCCCCC-C
Q 022917 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLS-S 72 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~-~ 72 (290)
+++|++|++++|.+++ .|..++.+++|++|++++|..+. .++..+.++++|++|++++|..++ +..++.++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 4789999999999986 77789999999999999994444 367778889999999999994344 33466788 9
Q ss_pred CCEEEeeCcc--CC--ccChhhcCCccccEEecccCcCC-ccCCC---CCcccceeccccccc
Q 022917 73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMI-RSLPE---LPFCLNYLNTSDCKR 127 (290)
Q Consensus 73 L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~~l-~~lp~---~~~~L~~L~l~~c~~ 127 (290)
|++|++++|. ++ .+|..+.++++|+.|++++|..+ ...+. ..++|+.|++++|..
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 9999999994 54 67888899999999999999843 33332 247899999999973
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5.3e-14 Score=117.04 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=87.5
Q ss_pred eeEEEcccC--CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-CCCCCCCCCEEEeeC
Q 022917 4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-GLSSLSSLKCLELSG 80 (290)
Q Consensus 4 L~~L~L~~~--~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~l~~l~~L~~L~Ls~ 80 (290)
|+.+.+.+. .++++|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|....++ .+..+++|+.|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 445555553 555666688888999999998876544 77 7888889999999988744332 233457889999999
Q ss_pred ccCCccChhhcCCccccEEecccCcCCccCCC-----CCcccceeccccccc
Q 022917 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKR 127 (290)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~~ 127 (290)
|.++.+| .+..+++|+.|++++|. +..+|. .+++|+.|++++|.-
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9888887 68888899999998876 444332 246788888888754
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=3.3e-11 Score=116.03 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=86.9
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE 77 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~ 77 (290)
|++|+.|+|++|.|+.+|..++.+++|+.|+|++|.+.+ +| .++++++|+.|+|++|.... |..++.+++|+.|+
T Consensus 462 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred cccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999987765 78 89999999999999998544 46788999999999
Q ss_pred eeCccCCccChhh----cCCccccEEec
Q 022917 78 LSGHNFESLPTGI----SQLQRLKCLHL 101 (290)
Q Consensus 78 Ls~n~l~~lp~~l----~~l~~L~~L~l 101 (290)
|++|.++.+|..+ ..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999877644 34788998864
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=8.2e-11 Score=105.79 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=84.6
Q ss_pred EEEcccC-CCcccCccccCCCCCcEEeccC-CCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917 6 EIDLFLS-GIKELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH 81 (290)
Q Consensus 6 ~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n 81 (290)
.++++++ .|+++|. +..+++|+.|+|++ |.+.+..|..+.++++|+.|+|++|.... +..|+.+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688887 9999999 99999999999997 66655555789999999999999997444 456789999999999999
Q ss_pred cCCccChhhcCCccccEEecccCcCC
Q 022917 82 NFESLPTGISQLQRLKCLHLINCNMI 107 (290)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~c~~l 107 (290)
.|+.+|..+.....|+.|+|.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 99999876554445999999997743
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2.2e-10 Score=93.32 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=75.3
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|+|++|.|+++ |..++.+++|++|+|++|.+.+..+..+.++++|++|+|++|....+ ..++.+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5789999999999997 55699999999999999876554344468999999999999985553 34889999999999
Q ss_pred eCccCCccChhhcC
Q 022917 79 SGHNFESLPTGISQ 92 (290)
Q Consensus 79 s~n~l~~lp~~l~~ 92 (290)
++|.+...+..+..
T Consensus 113 ~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 113 YNNPWDCECRDIMY 126 (174)
T ss_dssp CSSCBCTTBGGGHH
T ss_pred CCCCcccccccHHH
Confidence 99999877654443
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.8e-10 Score=91.50 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=73.2
Q ss_pred CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L 78 (290)
++|++|+|++|.|+++ |..+..+++|++|+|++|.+.+..+..+..+++|++|+|++|....+ ..++.+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5789999999999997 55699999999999999887655555578999999999999985553 34889999999999
Q ss_pred eCccCCccC
Q 022917 79 SGHNFESLP 87 (290)
Q Consensus 79 s~n~l~~lp 87 (290)
++|.++..+
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 999987444
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1.6e-12 Score=107.96 Aligned_cols=101 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred CCCCcEEeccCCCCCCcCcc------ccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChhhcCCcccc
Q 022917 24 IEGLKCLRLNSCTKLGFLPE------SLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLK 97 (290)
Q Consensus 24 L~~L~~L~L~~~~~l~~lp~------~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 97 (290)
...++.++++.+.+.+..|. .+..+++|++|++++|....++.++.+++|+.|++++|.++.+|..+..+++|+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 33444444444444333333 566666677777766664444455566667777777776666666666666677
Q ss_pred EEecccCcCCccCCCC--Ccccceeccccc
Q 022917 98 CLHLINCNMIRSLPEL--PFCLNYLNTSDC 125 (290)
Q Consensus 98 ~L~l~~c~~l~~lp~~--~~~L~~L~l~~c 125 (290)
.|++++|. +..+|.+ +++|+.|++++|
T Consensus 97 ~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 97 ELWISYNQ-IASLSGIEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEEEEEEE-CCCHHHHHHHHHSSEEEESEE
T ss_pred EEECcCCc-CCcCCccccCCCCCEEECCCC
Confidence 77776654 3344432 245666666664
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=1.7e-11 Score=111.96 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=72.4
Q ss_pred CceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCCcCc----cccCCC---------CCCcEEeccCCCCCC
Q 022917 2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGFLP----ESLCNL---------KKLQKLCLSQCRCLI 63 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~l---------~~L~~L~Ls~~~~l~ 63 (290)
++|++|+|++|.++. +|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|....
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 445555555555544 44445555555555555554422111 112222 556666666655221
Q ss_pred --c----CCCCCCCCCCEEEeeCccCC------ccChhhcCCccccEEecccCcCC----ccCCCC---Ccccceecccc
Q 022917 64 --L----SGLSSLSSLKCLELSGHNFE------SLPTGISQLQRLKCLHLINCNMI----RSLPEL---PFCLNYLNTSD 124 (290)
Q Consensus 64 --~----~~l~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~l~~c~~l----~~lp~~---~~~L~~L~l~~ 124 (290)
. ..+..+++|+.|++++|.++ -+|..+.++++|+.|+|++|... ..+|.. .++|+.|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 1 23445678888888888876 23336778888888888887742 445532 36788888888
Q ss_pred cc
Q 022917 125 CK 126 (290)
Q Consensus 125 c~ 126 (290)
|.
T Consensus 254 n~ 255 (386)
T 2ca6_A 254 CL 255 (386)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.01 E-value=1.1e-09 Score=98.83 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=86.0
Q ss_pred ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc-ccCCC-CCCcEEeccCCCCCC-cCCCCCCCCCCEEEe
Q 022917 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNL-KKLQKLCLSQCRCLI-LSGLSSLSSLKCLEL 78 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l-~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~L 78 (290)
+|++|++++|.++.+|+. +....++..|++.++..+..+|. .+..+ ..++.|++++|.... +.......+|+.|++
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 344444444444443321 22223333444433333333332 23333 357788888887444 344556678999999
Q ss_pred eC-ccCCccCh-hhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCCCCCC
Q 022917 79 SG-HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPKISS 136 (290)
Q Consensus 79 s~-n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~~~~ 136 (290)
++ |.++.+|. .++.+++|+.|++++|+ ++.+|. .+.+|+.|.+.++..++.+|....
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchh
Confidence 86 56889986 46899999999999976 778886 478899999999999999996433
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.91 E-value=4.1e-10 Score=102.72 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=100.5
Q ss_pred CceeEEEcccCCCcc--cC---ccccCCCCCcEEeccCCCCCC-----cCccccCCCCCCcEEeccCCCCC----C--cC
Q 022917 2 ELLQEIDLFLSGIKE--LP---SSIEHIEGLKCLRLNSCTKLG-----FLPESLCNLKKLQKLCLSQCRCL----I--LS 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~--lp---~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~~~~l----~--~~ 65 (290)
++|++|++++|.++. +| ..+..+++|+.|++++|.+.. ..|..+..+++|+.|+|++|... . +.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 689999999999973 55 467789999999999987652 24447888999999999999842 1 45
Q ss_pred CCCCCCCCCEEEeeCccCCc-----cChhhcC--CccccEEecccCcCCc----cCCCC----Ccccceeccccccc
Q 022917 66 GLSSLSSLKCLELSGHNFES-----LPTGISQ--LQRLKCLHLINCNMIR----SLPEL----PFCLNYLNTSDCKR 127 (290)
Q Consensus 66 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~--l~~L~~L~l~~c~~l~----~lp~~----~~~L~~L~l~~c~~ 127 (290)
.+..+++|+.|+|++|.++. +|..+.. +++|+.|+|++|.... .+|.. +++|+.|++++|.-
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 67788999999999999874 4667744 8999999999988655 37753 47899999998753
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=4.6e-10 Score=101.69 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred ceeEEEcccCCCcccC-----ccccCCC-CCcEEeccCCCCCCcCccccCCC-----CCCcEEeccCCCCCCc--C----
Q 022917 3 LLQEIDLFLSGIKELP-----SSIEHIE-GLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCLIL--S---- 65 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~Ls~~~~l~~--~---- 65 (290)
+|++|+|++|.+++.+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|..... .
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4777777777777655 3456666 67777777766655545444443 6677777777663221 1
Q ss_pred CCCCC-CCCCEEEeeCccCCccCh-h----hcC-CccccEEecccCc
Q 022917 66 GLSSL-SSLKCLELSGHNFESLPT-G----ISQ-LQRLKCLHLINCN 105 (290)
Q Consensus 66 ~l~~l-~~L~~L~Ls~n~l~~lp~-~----l~~-l~~L~~L~l~~c~ 105 (290)
.+..+ ++|+.|++++|.++..+. . +.. .++|++|++++|.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 12223 456666666666553332 1 222 1355555555554
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.85 E-value=7.1e-10 Score=100.45 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred ceeEEEcccCCCccc-CccccCC-----CCCcEEeccCCCCCCcCcccc----CCC-CCCcEEeccCCCCCCc------C
Q 022917 3 LLQEIDLFLSGIKEL-PSSIEHI-----EGLKCLRLNSCTKLGFLPESL----CNL-KKLQKLCLSQCRCLIL------S 65 (290)
Q Consensus 3 ~L~~L~L~~~~l~~l-p~~i~~L-----~~L~~L~L~~~~~l~~lp~~i----~~l-~~L~~L~Ls~~~~l~~------~ 65 (290)
+|++|+|++|.+++. +..+..+ ++|++|++++|.+.+..+..+ ..+ ++|++|++++|..... .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 789999999988874 4445554 889999999988765555533 344 7899999999873321 1
Q ss_pred CCCC-CCCCCEEEeeCccCC-----ccChhhcCCc-cccEEecccCcCCccCCC--------CCcccceecccccc
Q 022917 66 GLSS-LSSLKCLELSGHNFE-----SLPTGISQLQ-RLKCLHLINCNMIRSLPE--------LPFCLNYLNTSDCK 126 (290)
Q Consensus 66 ~l~~-l~~L~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~l~~c~~l~~lp~--------~~~~L~~L~l~~c~ 126 (290)
.+.. .++|++|++++|.++ .++..+..++ +|+.|++++|......+. .+++|+.|++++|.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 1333 368999999999887 4555666665 899999999874433321 12589999998874
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.79 E-value=1.9e-10 Score=106.88 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCceeEEEcccCCCccc------CccccCCCCCcEEeccCCCCCCc----CccccCCCCCCcEEeccCCCCCC--cCC--
Q 022917 1 MELLQEIDLFLSGIKEL------PSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCLI--LSG-- 66 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~l------p~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~--~~~-- 66 (290)
+++|++|++++|.+++. +..+..+++|+.|++++|.+... ++..+..+++|++|++++|.... +..
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 47899999999988762 22234688999999999876543 67777789999999999996322 111
Q ss_pred ---CCCCCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcCCccCC----C----CCcccceecccccc
Q 022917 67 ---LSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIRSLP----E----LPFCLNYLNTSDCK 126 (290)
Q Consensus 67 ---l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~lp----~----~~~~L~~L~l~~c~ 126 (290)
....++|+.|++++|.++. +|..+..+++|+.|++++|.....-+ + ..++|+.|++++|.
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 1233689999999999873 56777888999999999986432211 1 13589999998874
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.5e-08 Score=90.80 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCceeEEEccc-CCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cC-CCCCCCCCCEE
Q 022917 1 MELLQEIDLFL-SGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LS-GLSSLSSLKCL 76 (290)
Q Consensus 1 l~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~-~l~~l~~L~~L 76 (290)
+++|++|+|++ |.|+.+|+ .|+.|++|+.|+|++|.+.+..|..|.++++|+.|+|++|.... +. .+..+. |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 35799999997 99999875 59999999999999998888778888999999999999998554 23 344444 9999
Q ss_pred EeeCccCCc
Q 022917 77 ELSGHNFES 85 (290)
Q Consensus 77 ~Ls~n~l~~ 85 (290)
+|.+|.+..
T Consensus 109 ~l~~N~~~c 117 (347)
T 2ifg_A 109 VLSGNPLHC 117 (347)
T ss_dssp ECCSSCCCC
T ss_pred EeeCCCccC
Confidence 999999873
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.74 E-value=8.5e-10 Score=102.53 Aligned_cols=126 Identities=24% Similarity=0.236 Sum_probs=95.0
Q ss_pred CCceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCCcCccccC-----CCCCCcEEeccCCCCCC------c
Q 022917 1 MELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGFLPESLC-----NLKKLQKLCLSQCRCLI------L 64 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~l~~L~~L~Ls~~~~l~------~ 64 (290)
+++|++|++++|.++. ++..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.... +
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 3689999999999988 788888899999999999876443222222 33699999999998432 2
Q ss_pred CCCCCCCCCCEEEeeCccCCcc-Chhhc----C-CccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917 65 SGLSSLSSLKCLELSGHNFESL-PTGIS----Q-LQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 65 ~~l~~l~~L~~L~Ls~n~l~~l-p~~l~----~-l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~ 126 (290)
..+..+++|+.|++++|.++.. +..+. . .++|+.|++++|.... .+|.. .++|+.|++++|.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3355678999999999998743 33333 2 6799999999987543 56643 4789999999874
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=1.9e-09 Score=98.32 Aligned_cols=123 Identities=17% Similarity=0.119 Sum_probs=62.3
Q ss_pred ceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCcccc-----CCCCCCcEEeccCCCCCC------cCCCCC
Q 022917 3 LLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESL-----CNLKKLQKLCLSQCRCLI------LSGLSS 69 (290)
Q Consensus 3 ~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~Ls~~~~l~------~~~l~~ 69 (290)
+|++|+|++|.+++ +..-...+++|+.|+|++|.+...-...+ ...++|+.|+|++|.... ...+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 55666666665543 22212234456666666654432211121 234566666666665211 122344
Q ss_pred CCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcCCc----cCCCC---Ccccceeccccc
Q 022917 70 LSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 70 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c 125 (290)
.++|++|+|++|.++. ++..+...++|+.|+|++|.... .+... .++|+.|++++|
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 5667777777776552 34455566667777777665321 11111 245677777665
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=3.6e-09 Score=101.31 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=49.5
Q ss_pred CceeEEEcccCCCcc-cCcccc-CCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCCCCCC-----c-CCCCCCC
Q 022917 2 ELLQEIDLFLSGIKE-LPSSIE-HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLI-----L-SGLSSLS 71 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~-lp~~i~-~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~-----~-~~l~~l~ 71 (290)
++|++|+|+++.+++ .+..+. .+++|+.|++++|...+. ++..+.++++|++|++++|.... + .....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 355566666555544 222232 455666666665533222 23333345566666666654111 1 1122445
Q ss_pred CCCEEEeeCcc--CC--ccChhhcCCccccEEecccCc
Q 022917 72 SLKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 72 ~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~ 105 (290)
+|+.|++++|. +. .++..+.++++|+.|++++|.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 66666666654 21 222223445666666666553
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.57 E-value=2.1e-08 Score=95.99 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=54.5
Q ss_pred cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCC-----CcCCCCCCCCCCEEEeeCccCCccChhhcCCccc
Q 022917 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-----ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRL 96 (290)
Q Consensus 22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l-----~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 96 (290)
..+++|+.|++++|... .+|..+..+++|+.|+++++... ....++.+++|+.|+++++....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 33444444444443322 23334444444444444432211 0234566777777777776666777777778888
Q ss_pred cEEecccCcCCcc-CC---CCCcccceeccc
Q 022917 97 KCLHLINCNMIRS-LP---ELPFCLNYLNTS 123 (290)
Q Consensus 97 ~~L~l~~c~~l~~-lp---~~~~~L~~L~l~ 123 (290)
+.|++++|..... ++ ...++|+.|++.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 8888888762211 11 234566666664
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=1.3e-07 Score=84.28 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.2
Q ss_pred CCceeEEEcccCCCc--------------------ccCcc-ccC--------CCCCcEEeccCCCCCCcCccccCCCCCC
Q 022917 1 MELLQEIDLFLSGIK--------------------ELPSS-IEH--------IEGLKCLRLNSCTKLGFLPESLCNLKKL 51 (290)
Q Consensus 1 l~~L~~L~L~~~~l~--------------------~lp~~-i~~--------L~~L~~L~L~~~~~l~~lp~~i~~l~~L 51 (290)
+++|+.|+|++|.|+ .+|+. |.. +++|+.|++.+ .....-+..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 468999999998888 34443 556 89999999987 4443334567889999
Q ss_pred cEEeccCCCC
Q 022917 52 QKLCLSQCRC 61 (290)
Q Consensus 52 ~~L~Ls~~~~ 61 (290)
+.|++++|..
T Consensus 127 ~~l~l~~n~i 136 (329)
T 3sb4_A 127 KICQIRKKTA 136 (329)
T ss_dssp CEEEBCCSSC
T ss_pred ceEEcCCCCc
Confidence 9999988863
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.49 E-value=4.6e-08 Score=93.67 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=26.8
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccC
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNS 34 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 34 (290)
+++|+.|+++++.+.++|..+..+++|+.|+++.
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 4678888888888877777777788888888764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=1e-06 Score=78.42 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=52.8
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCc-EEeccCCC-CCCcCCCCCCCCCCEEE
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQ-KLCLSQCR-CLILSGLSSLSSLKCLE 77 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~-~L~Ls~~~-~l~~~~l~~l~~L~~L~ 77 (290)
++|+.|+|++|.++.+|+. |..+++|+.|++.++ +..++ ..|.++++|+ .+++.+.- .+....|..+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence 4566666666666665554 556666666666654 23332 3455566666 66665511 11134455666666666
Q ss_pred eeCccCCccCh-hhcCCccccEEe
Q 022917 78 LSGHNFESLPT-GISQLQRLKCLH 100 (290)
Q Consensus 78 Ls~n~l~~lp~-~l~~l~~L~~L~ 100 (290)
+++|.++.++. .+.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 66666665543 455555555554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.37 E-value=3e-08 Score=94.92 Aligned_cols=100 Identities=20% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCceeEEEcccC-CCcc--cCccccCCCCCcEEeccCCCCCCcCc----cccCCCCCCcEEeccCCC-CCCcCC----CC
Q 022917 1 MELLQEIDLFLS-GIKE--LPSSIEHIEGLKCLRLNSCTKLGFLP----ESLCNLKKLQKLCLSQCR-CLILSG----LS 68 (290)
Q Consensus 1 l~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~Ls~~~-~l~~~~----l~ 68 (290)
+++|++|+|++| .++. ++..+..+++|++|++++|.+.+..+ .....+++|+.|++++|. .+.... +.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 467888888887 5555 55555678888888888877443322 223366788888888875 222111 12
Q ss_pred CCCCCCEEEeeCc-cCCccChhhcCCccccEEe
Q 022917 69 SLSSLKCLELSGH-NFESLPTGISQLQRLKCLH 100 (290)
Q Consensus 69 ~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 100 (290)
.+++|+.|++++| .++.+|..+.++++|+.|+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 3577777777776 2334444444444444444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=5.1e-08 Score=88.87 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=80.9
Q ss_pred CceeEEEcccCCCccc-----Cccc-cCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cC
Q 022917 2 ELLQEIDLFLSGIKEL-----PSSI-EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LS 65 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~l-----p~~i-~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~ 65 (290)
++|++|+|++|.|++. ...+ ...++|+.|+|++|.+.. .++..+...++|++|+|++|.... ..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 4799999999999762 2222 346889999999987643 345556788999999999998332 23
Q ss_pred CCCCCCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcC
Q 022917 66 GLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNM 106 (290)
Q Consensus 66 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~ 106 (290)
.+...++|+.|+|++|.++. +...+...++|+.|+|++|..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 45667899999999999873 455667789999999999873
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=3.5e-07 Score=74.33 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=53.6
Q ss_pred cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCC----CCCCEEEeeCcc-CC--cc
Q 022917 17 LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSL----SSLKCLELSGHN-FE--SL 86 (290)
Q Consensus 17 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l----~~L~~L~Ls~n~-l~--~l 86 (290)
+|.....--+|+.||+++|.....--..+..+++|+.|+|++|..++ ...++.+ ++|++|+|++|. ++ .+
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45432222467777887776543333445677777777777776555 2223332 357777777764 65 23
Q ss_pred ChhhcCCccccEEecccCcCCc
Q 022917 87 PTGISQLQRLKCLHLINCNMIR 108 (290)
Q Consensus 87 p~~l~~l~~L~~L~l~~c~~l~ 108 (290)
..+.++++|+.|++++|..++
T Consensus 133 -~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCC
T ss_pred -HHHhcCCCCCEEECCCCCCCC
Confidence 245566777777777766443
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.1e-07 Score=76.25 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=61.8
Q ss_pred cccCCCCCcEEeccCC-CCCC----cCccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCCc---
Q 022917 20 SIEHIEGLKCLRLNSC-TKLG----FLPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFES--- 85 (290)
Q Consensus 20 ~i~~L~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~~--- 85 (290)
.+...++|+.|+|++| .+.. .+...+...++|++|+|++|..-. ...+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455677777777776 4322 133445566777777777776222 1223344677778887777762
Q ss_pred --cChhhcCCccccEEec--ccCcCCcc----CCCC---Ccccceeccccc
Q 022917 86 --LPTGISQLQRLKCLHL--INCNMIRS----LPEL---PFCLNYLNTSDC 125 (290)
Q Consensus 86 --lp~~l~~l~~L~~L~l--~~c~~l~~----lp~~---~~~L~~L~l~~c 125 (290)
+...+...++|+.|++ ++|..-.. +.+. -++|++|++++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4556666677888887 55543211 1111 245777777664
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=9.9e-07 Score=71.67 Aligned_cols=82 Identities=24% Similarity=0.295 Sum_probs=64.6
Q ss_pred ceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcC-ccccCCC----CCCcEEeccCCCCCC---cCCCCCCCC
Q 022917 3 LLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFL-PESLCNL----KKLQKLCLSQCRCLI---LSGLSSLSS 72 (290)
Q Consensus 3 ~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l----~~L~~L~Ls~~~~l~---~~~l~~l~~ 72 (290)
+|+.||++++.|+. +. .+..+++|+.|+|++|..++.- -..+..+ ++|+.|+|++|..++ +..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 58999999999877 43 3788999999999999865442 1234444 379999999998777 445678899
Q ss_pred CCEEEeeCcc-CCc
Q 022917 73 LKCLELSGHN-FES 85 (290)
Q Consensus 73 L~~L~Ls~n~-l~~ 85 (290)
|+.|++++|. ++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999996 653
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.6e-06 Score=75.32 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCCCCcEEeccCCCCCCcCCC----CCCCCCCEEEeeCccCCccChhhcCCc--cccEEecccCcCCccCC
Q 022917 47 NLKKLQKLCLSQCRCLILSGL----SSLSSLKCLELSGHNFESLPTGISQLQ--RLKCLHLINCNMIRSLP 111 (290)
Q Consensus 47 ~l~~L~~L~Ls~~~~l~~~~l----~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~l~~c~~l~~lp 111 (290)
++++|+.|+|++|....+..+ +.+++|+.|+|++|.++.+. .+..+. +|+.|+|++|...+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 345555555555553332222 24555666666666555442 233333 56666666655444444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2.1e-06 Score=77.83 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCceeEEEcccCCCc----------ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCC
Q 022917 1 MELLQEIDLFLSGIK----------ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGL 67 (290)
Q Consensus 1 l~~L~~L~L~~~~l~----------~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l 67 (290)
+++|+.|.+.+.... .++..+..+++|+.|++++|... .++. + .+++|+.|++..|. +.. ..+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHH
Confidence 468999988764321 24444677899999999987433 3443 4 38899999999876 331 122
Q ss_pred --CCCCCCCEEEeeCc--c------CCccChhh--cCCccccEEecccCcCCccCC------CCCcccceeccccc
Q 022917 68 --SSLSSLKCLELSGH--N------FESLPTGI--SQLQRLKCLHLINCNMIRSLP------ELPFCLNYLNTSDC 125 (290)
Q Consensus 68 --~~l~~L~~L~Ls~n--~------l~~lp~~l--~~l~~L~~L~l~~c~~l~~lp------~~~~~L~~L~l~~c 125 (290)
..+++|+.|+|+.+ . +..+...+ ..+++|+.|++.+|......+ ..+++|+.|+++.|
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 36889999998632 1 22222222 357899999999877542211 13578999999764
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=5.6e-06 Score=75.04 Aligned_cols=124 Identities=17% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCcccc--CCCCCCcEEeccCCCCC---C--c----CCC--
Q 022917 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESL--CNLKKLQKLCLSQCRCL---I--L----SGL-- 67 (290)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i--~~l~~L~~L~Ls~~~~l---~--~----~~l-- 67 (290)
+++|+.|+|+++.-..++. +. +++|+.|++..|.........+ ..+++|+.|+|+.+... . + ..+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 4789999999873224555 43 8999999999876543322233 37899999998642110 0 1 112
Q ss_pred CCCCCCCEEEeeCccCC-ccChhh---cCCccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917 68 SSLSSLKCLELSGHNFE-SLPTGI---SQLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK 126 (290)
Q Consensus 68 ~~l~~L~~L~Ls~n~l~-~lp~~l---~~l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~ 126 (290)
..+++|+.|+|.+|.+. ..+..+ ..+++|+.|+|+.|.... .++.. +++|+.|++++|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35789999999999886 233333 357899999999876432 23332 4689999998763
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=4.6e-06 Score=68.17 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=59.8
Q ss_pred CceeEEEcccC-CCcc-----cCccccCCCCCcEEeccCCCCCCc----CccccCCCCCCcEEeccCCCCCC------cC
Q 022917 2 ELLQEIDLFLS-GIKE-----LPSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCLI------LS 65 (290)
Q Consensus 2 ~~L~~L~L~~~-~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~------~~ 65 (290)
++|++|+|++| .|.. +...+...++|++|+|++|.+... +...+...++|++|+|++|..-. ..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45667777776 6653 344455566677777777654321 22334445667777777765222 23
Q ss_pred CCCCCCCCCEEEe--eCccCCc-----cChhhcCCccccEEecccCc
Q 022917 66 GLSSLSSLKCLEL--SGHNFES-----LPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 66 ~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~l~~c~ 105 (290)
.+...++|+.|+| ++|.+.. +...+...++|+.|++++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3445566777777 6666652 33445555667777776654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=3.1e-05 Score=67.14 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=57.1
Q ss_pred cCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCCcCCCCCCC--CCCEEEeeCccCC-ccCh-------h
Q 022917 22 EHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLILSGLSSLS--SLKCLELSGHNFE-SLPT-------G 89 (290)
Q Consensus 22 ~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~--~L~~L~Ls~n~l~-~lp~-------~ 89 (290)
..+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|......++..+. +|+.|+|++|.+. .+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 457888888888887765 45556667888888888888865554555555 8888888888876 4552 3
Q ss_pred hcCCccccEEe
Q 022917 90 ISQLQRLKCLH 100 (290)
Q Consensus 90 l~~l~~L~~L~ 100 (290)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777776
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=0.00045 Score=63.26 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=54.3
Q ss_pred CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeC
Q 022917 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~ 80 (290)
++|+.+++.+|.++.+|.......+|+.+.+..+ ....-...+.++++|+.+++..+- .+....|.. .+|+.+.+ .
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p 256 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-P 256 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-E
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-C
Confidence 4566666666666665555333455666665532 222222345566667776665531 011233444 56666666 3
Q ss_pred ccCCccC-hhhcCCccccEEecccCc
Q 022917 81 HNFESLP-TGISQLQRLKCLHLINCN 105 (290)
Q Consensus 81 n~l~~lp-~~l~~l~~L~~L~l~~c~ 105 (290)
+.++.++ ..+.++++|+.+.+.++.
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CCccEEChhHhhCCCCCCEEEeCCcc
Confidence 3455553 356777788888777643
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.33 E-value=0.00091 Score=61.22 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=75.2
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc-ccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L 78 (290)
.+|+.+.+.. .++.++.. |..+++|+.+++..+ +..++. .+.+ .+|+.+.+..+- .+....|..+++|+.+++
T Consensus 203 ~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence 4677888874 47777665 778889999998763 334443 3434 678888885431 112456777888888888
Q ss_pred eCccCC-----ccC-hhhcCCccccEEecccCcCCccCCCC----Ccccceeccc
Q 022917 79 SGHNFE-----SLP-TGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTS 123 (290)
Q Consensus 79 s~n~l~-----~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~ 123 (290)
.+|.+. .++ ..+.++++|+.+.+.+ .+..++.. ..+|+.+.+.
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence 877654 343 4667778888888773 25556542 2556666664
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.33 E-value=0.018 Score=51.49 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=66.8
Q ss_pred ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeC
Q 022917 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSG 80 (290)
Q Consensus 3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~ 80 (290)
+|+.+.+.. .++.+... +..+..|+.+.+..+ ....-...+.++.+|+.+.+..+- .+....+..+.+|+.+.+.+
T Consensus 218 ~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 218 NLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC
T ss_pred ccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccc
Confidence 455555543 34444433 667788888888663 222223456677888888886542 11134577788899998888
Q ss_pred ccCCccCh-hhcCCccccEEecccCcCCccCC
Q 022917 81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLP 111 (290)
Q Consensus 81 n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp 111 (290)
+.++.++. ++.++.+|+.+.+..+ ++.|+
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~ 325 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQ 325 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred cccceehhhhhcCCCCCCEEEcCcc--ccEEH
Confidence 88887754 6778888888888532 44444
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.007 Score=46.19 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=28.7
Q ss_pred EEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917 6 EIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (290)
Q Consensus 6 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 60 (290)
.++.++++++ .+|..+. .+|+.|+|++|.+...-+..+..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4566666776 6665432 356777777755433222334445555555555543
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.89 E-value=0.0044 Score=50.94 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=56.4
Q ss_pred ccCCCCCcEEeccCCCCCCc-----CccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCC-----
Q 022917 21 IEHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFE----- 84 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~----- 84 (290)
+..-+.|+.|+|++++.++. +-+.+..-+.|+.|+|++|..-. -..+..=+.|+.|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34457888899987534432 33455667789999999887322 011223467999999999887
Q ss_pred ccChhhcCCccccEEecccCc
Q 022917 85 SLPTGISQLQRLKCLHLINCN 105 (290)
Q Consensus 85 ~lp~~l~~l~~L~~L~l~~c~ 105 (290)
.+-..+..-+.|+.|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 234456666789999998653
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.59 E-value=0.03 Score=50.50 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=59.3
Q ss_pred ccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccCh-hhcCCcccc
Q 022917 21 IEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLK 97 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 97 (290)
+..+.+|+.+.+.++ +..+ ...+.++++|+.+++..+- .+....|.++.+|+.+++..+ ++.++. ++.++++|+
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 667889999998763 3333 3457788999999997541 122466888999999999766 776644 678899999
Q ss_pred EEeccc
Q 022917 98 CLHLIN 103 (290)
Q Consensus 98 ~L~l~~ 103 (290)
.+.+..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 998865
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.56 E-value=0.075 Score=47.87 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccC-hhhcCCccccE
Q 022917 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC 98 (290)
Q Consensus 21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~ 98 (290)
|..+.+|+.+.+.+. ....-...+.++++|+.+.+...- .+....|..+.+|+.+++..+ ++.+. .++.++.+|+.
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 556677777777652 222223445667778877775421 111345667778888877643 55553 35677777877
Q ss_pred EecccCcCCccCCCC----Ccccceeccc
Q 022917 99 LHLINCNMIRSLPEL----PFCLNYLNTS 123 (290)
Q Consensus 99 L~l~~c~~l~~lp~~----~~~L~~L~l~ 123 (290)
+.+..+ ++.+++. ..+|+.+++.
T Consensus 339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 339 IAIPSS--VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EEECTT--CCBCCGGGGTTCTTCCEEEES
T ss_pred EEECcc--cCEEhHhHhhCCCCCCEEEEC
Confidence 777532 4555532 2344544443
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.42 E-value=0.099 Score=46.62 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=61.0
Q ss_pred cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccCh-hhcCCcccc
Q 022917 20 SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLK 97 (290)
Q Consensus 20 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 97 (290)
.+....+|+.+.+..+ ....-...+.++..|+.+.+..+- .+....+..+.+|+.+.+..+ ++.++. .+.++++|+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 3556778888888652 222233456778899999987652 122456778889999998654 665554 578889999
Q ss_pred EEecccCcCCccCCC
Q 022917 98 CLHLINCNMIRSLPE 112 (290)
Q Consensus 98 ~L~l~~c~~l~~lp~ 112 (290)
.+.+.++. ++.|++
T Consensus 290 ~i~l~~~~-i~~I~~ 303 (379)
T 4h09_A 290 KVVMDNSA-IETLEP 303 (379)
T ss_dssp EEEECCTT-CCEECT
T ss_pred cccccccc-cceehh
Confidence 99987643 555554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.30 E-value=0.038 Score=49.83 Aligned_cols=100 Identities=11% Similarity=0.210 Sum_probs=71.5
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL 78 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L 78 (290)
.+|+.+.+..+ ++.+... +.++++|+.+.+.. . +..++ ..+.++.+|+.+.+..+- .+....|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEE
Confidence 45667776543 3444443 77889999999974 3 33444 457789999999997641 122466889999999999
Q ss_pred eCccCCccCh-hhcCCccccEEecccCc
Q 022917 79 SGHNFESLPT-GISQLQRLKCLHLINCN 105 (290)
Q Consensus 79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~ 105 (290)
..+ ++.+.. ++.++++|+.+.+.++.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 654 777754 68899999999998753
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.92 E-value=0.022 Score=43.39 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCC
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTK 37 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~ 37 (290)
++|++|+|++|.|+.+|.. +..+++|+.|+|++|..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3799999999999999876 78899999999999765
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.88 E-value=0.076 Score=47.83 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC------------CCC----
Q 022917 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR------------CLI---- 63 (290)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~------------~l~---- 63 (290)
.+|+.+.+.. .++.+++. |.++++|+.+++.++ +..++ ..+.++++|+.+.+..+- ...
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 5677777753 46666554 667777887777642 22222 334455555555443221 000
Q ss_pred -------cCCCCCCCCCCEEEeeCccCCccC-hhhcCCccccEEeccc
Q 022917 64 -------LSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLIN 103 (290)
Q Consensus 64 -------~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~l~~ 103 (290)
...|..+++|+.+.+.++ +..++ ..+.++.+|+.+.+..
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 233556667777776543 23332 2455566666666543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.50 E-value=0.015 Score=47.73 Aligned_cols=81 Identities=9% Similarity=0.105 Sum_probs=52.2
Q ss_pred cCCCCCCcEEeccCCCCCC-------cCCCCCCCCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc----
Q 022917 45 LCNLKKLQKLCLSQCRCLI-------LSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR---- 108 (290)
Q Consensus 45 i~~l~~L~~L~Ls~~~~l~-------~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~---- 108 (290)
+.+-+.|+.|+|+++..+. ...+..=+.|+.|+|++|.+. .+-..+..-+.|+.|+|+.|..-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 3456778889998763344 123445578899999998876 344455666789999998876321
Q ss_pred cCCC---CCcccceeccccc
Q 022917 109 SLPE---LPFCLNYLNTSDC 125 (290)
Q Consensus 109 ~lp~---~~~~L~~L~l~~c 125 (290)
.+-+ .-..|+.|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 1111 1246888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.07 E-value=40 Score=23.66 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=11.7
Q ss_pred CCCcccCcc-ccCCCCCcEEeccC
Q 022917 12 SGIKELPSS-IEHIEGLKCLRLNS 34 (290)
Q Consensus 12 ~~l~~lp~~-i~~L~~L~~L~L~~ 34 (290)
..++.+... |..+++|+.+.+-.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT
T ss_pred CccCEecHHHhcCCCCCcEEEcCC
Confidence 344444443 55555665555543
Done!