Query 022918
Match_columns 290
No_of_seqs 338 out of 1954
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 8E-58 1.7E-62 482.3 23.5 242 8-288 4-246 (1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 1.5E-56 3.2E-61 473.2 24.5 232 19-287 2-233 (1021)
3 PF02837 Glyco_hydro_2_N: Glyc 100.0 1.6E-34 3.4E-39 246.0 13.4 166 86-261 1-167 (167)
4 PRK10150 beta-D-glucuronidase; 100.0 6.6E-34 1.4E-38 287.6 19.9 183 86-288 9-207 (604)
5 COG3250 LacZ Beta-galactosidas 100.0 7.4E-29 1.6E-33 255.2 13.4 197 86-288 9-207 (808)
6 KOG2024 Beta-Glucuronidase GUS 99.6 2.5E-15 5.4E-20 135.1 9.7 177 85-282 28-210 (297)
7 KOG2230 Predicted beta-mannosi 99.1 7.5E-10 1.6E-14 108.9 10.2 174 88-283 21-232 (867)
8 PF13364 BetaGal_dom4_5: Beta- 97.9 5.8E-05 1.3E-09 60.6 8.7 71 157-233 33-107 (111)
9 COG3250 LacZ Beta-galactosidas 97.8 3.6E-05 7.8E-10 80.7 6.8 71 159-233 63-133 (808)
10 PLN03059 beta-galactosidase; P 97.7 0.0002 4.3E-09 74.9 10.3 95 157-259 468-571 (840)
11 PF08531 Bac_rhamnosid_N: Alph 97.5 0.0002 4.4E-09 61.7 5.3 52 177-233 5-65 (172)
12 KOG0496 Beta-galactosidase [Ca 95.8 0.041 8.9E-07 56.2 8.5 75 177-260 434-514 (649)
13 PLN03059 beta-galactosidase; P 95.6 0.027 5.7E-07 59.4 6.6 66 158-230 618-711 (840)
14 KOG0496 Beta-galactosidase [Ca 94.3 0.1 2.2E-06 53.4 6.4 67 158-232 556-624 (649)
15 PF07691 PA14: PA14 domain; I 92.3 1.7 3.7E-05 35.1 9.9 72 158-236 45-123 (145)
16 PF14683 CBM-like: Polysacchar 89.0 0.87 1.9E-05 39.2 5.3 69 161-234 63-153 (167)
17 PF03170 BcsB: Bacterial cellu 88.5 1.9 4.1E-05 44.2 8.3 72 161-236 29-113 (605)
18 smart00758 PA14 domain in bact 87.1 6.3 0.00014 31.7 9.2 70 158-234 43-113 (136)
19 PF08308 PEGA: PEGA domain; I 86.9 1.4 3E-05 31.8 4.6 43 180-234 4-46 (71)
20 PF03170 BcsB: Bacterial cellu 86.2 2.3 4.9E-05 43.6 7.3 67 164-234 327-410 (605)
21 PRK11114 cellulose synthase re 82.2 4.9 0.00011 42.6 7.9 69 164-236 84-166 (756)
22 PF06832 BiPBP_C: Penicillin-B 77.9 10 0.00022 28.6 6.5 48 174-229 30-77 (89)
23 PF12733 Cadherin-like: Cadher 70.2 20 0.00043 26.6 6.4 56 166-234 17-73 (88)
24 PF04566 RNA_pol_Rpb2_4: RNA p 61.9 6.7 0.00014 28.2 2.1 13 191-203 1-13 (63)
25 PF11008 DUF2846: Protein of u 59.9 30 0.00065 27.5 5.9 34 186-229 40-74 (117)
26 PF12222 PNGaseA: Peptide N-ac 58.6 21 0.00045 35.4 5.7 51 184-234 218-291 (427)
27 PF14814 UB2H: Bifunctional tr 58.0 23 0.0005 26.7 4.7 41 158-199 38-81 (85)
28 PF14324 PINIT: PINIT domain; 49.4 24 0.00053 29.4 3.9 51 177-233 74-131 (144)
29 PF11824 DUF3344: Protein of u 44.7 57 0.0012 30.2 5.9 21 208-232 112-132 (271)
30 PF07550 DUF1533: Protein of u 41.7 38 0.00082 24.2 3.4 44 188-235 8-59 (65)
31 PRK11114 cellulose synthase re 39.4 61 0.0013 34.4 5.9 37 164-200 379-426 (756)
32 smart00560 LamGL LamG-like jel 37.8 40 0.00086 27.1 3.4 26 177-202 65-90 (133)
33 PF09113 N-glycanase_C: Peptid 37.5 92 0.002 26.1 5.5 67 162-233 11-118 (141)
34 PF11824 DUF3344: Protein of u 34.2 66 0.0014 29.7 4.6 48 180-231 204-254 (271)
35 PF07908 D-aminoacyl_C: D-amin 32.1 36 0.00078 22.9 1.9 12 189-200 21-32 (48)
36 PF10262 Rdx: Rdx family; Int 31.7 62 0.0013 23.7 3.3 24 176-200 33-56 (76)
37 PF05775 AfaD: Enterobacteria 29.3 1.1E+02 0.0025 24.5 4.6 45 179-233 18-62 (111)
38 PF13385 Laminin_G_3: Concanav 29.3 60 0.0013 25.4 3.1 24 177-202 89-112 (157)
39 PF09829 DUF2057: Uncharacteri 29.2 1.2E+02 0.0027 26.1 5.2 38 188-234 9-46 (189)
40 COG0278 Glutaredoxin-related p 27.8 37 0.00081 26.9 1.5 16 186-201 70-85 (105)
41 PF11324 DUF3126: Protein of u 27.3 1.4E+02 0.003 21.6 4.2 30 184-213 25-58 (63)
42 PF00337 Gal-bind_lectin: Gala 26.4 96 0.0021 24.8 3.8 27 174-200 81-107 (133)
43 PF15625 CC2D2AN-C2: CC2D2A N- 25.4 1.1E+02 0.0023 26.1 4.0 41 186-235 38-78 (168)
44 smart00776 NPCBM This novel pu 25.1 1.8E+02 0.004 24.1 5.4 41 188-237 86-131 (145)
45 KOG4342 Alpha-mannosidase [Car 24.4 3E+02 0.0066 29.1 7.5 67 160-233 103-172 (1078)
46 PRK10824 glutaredoxin-4; Provi 24.1 55 0.0012 26.3 1.9 22 180-201 63-84 (115)
47 smart00561 MBT Present in Dros 24.0 62 0.0014 25.1 2.2 20 175-194 55-74 (96)
48 cd00070 GLECT Galectin/galacto 23.3 1.1E+02 0.0025 24.3 3.7 27 174-200 76-102 (127)
49 TIGR02148 Fibro_Slime fibro-sl 22.8 3.7E+02 0.008 20.8 6.6 53 178-234 20-76 (90)
50 PF06439 DUF1080: Domain of Un 21.8 1.3E+02 0.0028 25.0 3.9 19 187-205 139-157 (185)
51 PF13464 DUF4115: Domain of un 21.3 1.7E+02 0.0036 21.2 4.0 25 175-200 37-61 (77)
52 COG4189 Predicted transcriptio 21.1 3.3E+02 0.0071 25.2 6.4 15 187-201 195-209 (308)
53 PRK01904 hypothetical protein; 20.8 1.4E+02 0.003 26.6 4.1 39 188-234 30-68 (219)
54 KOG1752 Glutaredoxin and relat 20.5 74 0.0016 25.2 2.0 23 180-202 60-82 (104)
55 PRK04517 hypothetical protein; 20.5 1.5E+02 0.0032 26.5 4.1 39 188-234 31-70 (216)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=8e-58 Score=482.32 Aligned_cols=242 Identities=43% Similarity=0.793 Sum_probs=222.8
Q ss_pred cccccccCCCCCCCCCccccccccCCCCCCccccCCHHHHhhhhhccccccccccCCccccchhhhhhhhhccccCCCCC
Q 022918 8 LPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLP 87 (290)
Q Consensus 8 ~~~~~~~~~~~~~w~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 87 (290)
+|..|++....++||||+|+++|||||||+|+||++.++|+.. ..|+
T Consensus 4 ~~~~~~~~~~~~~wenp~v~~~nr~~~~a~~~~~~~~~~a~~~---------------------------------~~s~ 50 (1027)
T PRK09525 4 IMDSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDD---------------------------------RPSQ 50 (1027)
T ss_pred chhHHHhhhccCCccCccccCCCCCCCCCCcCCcCCHHHHhhc---------------------------------cCCc
Confidence 3555555444579999999999999999999999999988742 1245
Q ss_pred ceEecCccceEEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEEEEE
Q 022918 88 FVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYF 167 (290)
Q Consensus 88 ~~~sLnG~WkF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYrr~F 167 (290)
..++|||.|+|++.+.+...|++|+..++++ |+.|+||++|+++|++.++|+|+.|||+.+||++|.+|++|||||+|
T Consensus 51 ~~~sLnG~W~F~~~~~~~~~~~~~~~~~~~~--w~~I~VP~~w~~~G~~~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F 128 (1027)
T PRK09525 51 QRQSLNGEWRFSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFVPEENPTGCYSLTF 128 (1027)
T ss_pred ceEecCCCcceeECCChhhCcccccccCCCC--CcEeCCCCcHHhcCCCCCccccccCCCCCCCCCCCCcCCeEEEEEEE
Confidence 8899999999999999988999999988765 99999999999999999999999999999999999889999999999
Q ss_pred EcCCCCCCC-eEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCCCC
Q 022918 168 HIPKEWQGR-RILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHW 246 (290)
Q Consensus 168 ~lp~~~~~~-~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w 246 (290)
++|+.|.++ +++|+|+||++.++|||||++||+|+++|+||+||||++|++ |+ |+|+|+|.+|++|+|+++||+|
T Consensus 129 ~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~---G~-N~L~V~V~~~sdgs~~e~qd~w 204 (1027)
T PRK09525 129 TVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRA---GE-NRLAVMVLRWSDGSYLEDQDMW 204 (1027)
T ss_pred EeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcC---Cc-cEEEEEEEecCCCCccccCCce
Confidence 999999887 999999999999999999999999999999999999999999 95 9999999999999999999999
Q ss_pred ccccccccceeeEecCccEEeEEEEEeecCCceeEEEEEEEe
Q 022918 247 WLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTC 288 (290)
Q Consensus 247 ~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~l~v~v~ 288 (290)
+++||||+|+|+++|++||+|++|+++++.+++.|.|+|++.
T Consensus 205 ~~sGI~R~V~L~~~p~~~I~d~~v~t~l~~~~~~a~v~v~v~ 246 (1027)
T PRK09525 205 RMSGIFRDVSLLHKPTTQLSDFHITTELDDDFRRAVLEVEAQ 246 (1027)
T ss_pred eeccccceEEEEEcCCcEEeeeEEEeeccCccceEEEEEEEE
Confidence 999999999999999999999999999998887888877653
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-56 Score=473.19 Aligned_cols=232 Identities=38% Similarity=0.758 Sum_probs=217.3
Q ss_pred CCCCCccccccccCCCCCCccccCCHHHHhhhhhccccccccccCCccccchhhhhhhhhccccCCCCCceEecCccceE
Q 022918 19 KVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKF 98 (290)
Q Consensus 19 ~~w~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~WkF 98 (290)
++||||+|+++|||||||+|+||++.++|+... + ..|+..++|||.|+|
T Consensus 2 ~~wen~~~~~~nr~~~~a~~~~~~~~~~a~~~~--~-----------------------------~~~~~~~~LnG~W~F 50 (1021)
T PRK10340 2 NRWENIQLTHENRLAPRAYFFSYDSVAQARTFA--R-----------------------------ETSSLFLLLSGQWNF 50 (1021)
T ss_pred CcccCccccCCCCCCCCCCcCCcCCHHHHhhcc--c-----------------------------ccCCceeecCcceeE
Confidence 689999999999999999999999999887531 0 135689999999999
Q ss_pred EeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEEEEEEcCCCCCCCeE
Q 022918 99 FLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRI 178 (290)
Q Consensus 99 ~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYrr~F~lp~~~~~~~v 178 (290)
++.+.+...|++|+.+++ ++|++|+|||+|+++|++.|+|+|..|||+..||++|..+++|||||+|++|+.|+|+++
T Consensus 51 ~~~~~~~~~~~~f~~~~~--~~W~~I~VP~~w~~~g~~~~~y~n~~y~~~~~~P~vp~~n~~g~Yrr~F~lp~~~~gkrv 128 (1021)
T PRK10340 51 HFFDHPLYVPEAFTSELM--SDWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRTFTLSDGWQGKQT 128 (1021)
T ss_pred EEeCCccccccccccCCC--CCCcEeecCCChhhcCCCCcccccccccCCCCCCCCCCcCCeEEEEEEEEeCcccccCcE
Confidence 999888888999998887 679999999999999999999999999999999999988999999999999999999999
Q ss_pred EEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCccccccccceee
Q 022918 179 LLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLL 258 (290)
Q Consensus 179 ~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~sGI~RdV~L~ 258 (290)
+|+|+||++.++|||||++||+|+|+|+|++||||++|+. |+ |+|+|+|++|++++|+++||+|+++||||+|+|+
T Consensus 129 ~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~---G~-N~LaV~V~~~~d~s~le~qd~w~~sGI~R~V~L~ 204 (1021)
T PRK10340 129 IIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKT---GD-NLLCVRVMQWADSTYLEDQDMWWLAGIFRDVYLV 204 (1021)
T ss_pred EEEECccceEEEEEECCEEeccccCCCccEEEEcchhhCC---Cc-cEEEEEEEecCCCCccccCCccccccccceEEEE
Confidence 9999999999999999999999999999999999999999 95 9999999999999999999999999999999999
Q ss_pred EecCccEEeEEEEEeecCCceeEEEEEEE
Q 022918 259 AKPQVFIADYFFKSNLAEDFSLADIQVNT 287 (290)
Q Consensus 259 ~~p~~~I~D~~v~t~ld~~~~~~~l~v~v 287 (290)
++|++||+|++|+++++.+++.|+|+|++
T Consensus 205 ~~p~~~I~d~~v~t~l~~~~~~a~l~v~v 233 (1021)
T PRK10340 205 GKPLTHINDFTVRTDFDEDYCDATLSCEV 233 (1021)
T ss_pred EeCCceEEeeEEEeeccCccCceEEEEEE
Confidence 99999999999999999888778777664
No 3
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=100.00 E-value=1.6e-34 Score=245.96 Aligned_cols=166 Identities=37% Similarity=0.655 Sum_probs=136.4
Q ss_pred CCceEecCccceEEeecCCCCCCcc-ccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEE
Q 022918 86 LPFVKSLSGHWKFFLASSPPDVPLN-FHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYR 164 (290)
Q Consensus 86 s~~~~sLnG~WkF~~~~~~~~~p~~-~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYr 164 (290)
||..++|||.|+|+........+.. +..+.++++.|..|.||++|+..++......+ ..+......+.+|||
T Consensus 1 ~r~~~~Lng~W~f~~~~~~~~~~~~~~~~~~~~~~~w~~i~VP~~~~~~~~~~~~~~~-------~~~~~~~~~~~~wYr 73 (167)
T PF02837_consen 1 SRQVISLNGQWQFQPDDSPQDRPEGWFSWPDFDDSDWQPISVPGSWEDDLLRAFVPEN-------GDPELWDYSGYAWYR 73 (167)
T ss_dssp TTCEEESSEEEEEEEESSGGGSCTHHCCSTTCCCTTSEEEEESSEGTCCTSSTBTTST-------TGCCTSTCCSEEEEE
T ss_pred CCcEEECCccCCEEEeCCcccCccccccccccCcCCCeEEeCCCEeecCccceecccc-------ccccccccCceEEEE
Confidence 3678999999999999887655555 33446778899999999999987543200000 000111247899999
Q ss_pred EEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCC
Q 022918 165 TYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQD 244 (290)
Q Consensus 165 r~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd 244 (290)
|+|++|+++++++++|+|+||++.++|||||++||.+.++|+|+++|||++|++ |++|+|+|+|.+..++.+++.++
T Consensus 74 ~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~~l~~---g~~N~l~V~v~~~~~~~~~~~~~ 150 (167)
T PF02837_consen 74 RTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITDYLKP---GEENTLAVRVDNWPDGSTIPGFD 150 (167)
T ss_dssp EEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGGGSSS---EEEEEEEEEEESSSGGGCGBSSS
T ss_pred EEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChhhccC---CCCEEEEEEEeecCCCceeecCc
Confidence 999999999999999999999999999999999999999999999999999999 85599999999999888888888
Q ss_pred CCccccccccceeeEec
Q 022918 245 HWWLSGIHRDVLLLAKP 261 (290)
Q Consensus 245 ~w~~sGI~RdV~L~~~p 261 (290)
++..+||||+|+|+++|
T Consensus 151 ~~~~~GI~r~V~L~~~p 167 (167)
T PF02837_consen 151 YFNYAGIWRPVWLEATP 167 (167)
T ss_dssp EEE--EEESEEEEEEEE
T ss_pred CCccCccccEEEEEEEC
Confidence 88999999999999986
No 4
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=6.6e-34 Score=287.63 Aligned_cols=183 Identities=29% Similarity=0.436 Sum_probs=151.9
Q ss_pred CCceEecCccceEEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEEE
Q 022918 86 LPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRT 165 (290)
Q Consensus 86 s~~~~sLnG~WkF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYrr 165 (290)
.+..++|||.|+|+..+.+...+++|+...++. +..|.||++|+.++.+.+.. ...+.+||||
T Consensus 9 ~r~~~~Lng~W~F~~~~~~~~~~~~w~~~~~~~--~~~i~vP~~~~~~~~~~~~~---------------~~~G~~WYrr 71 (604)
T PRK10150 9 TREIKDLSGLWAFKLDRENCGIDQRWWESALPE--SRAMAVPGSFNDQFADADIR---------------NYVGDVWYQR 71 (604)
T ss_pred CeeeeecCCccceEECCccccccccccccCCCC--CcEecCCCchhhcccccccc---------------CCcccEEEEE
Confidence 457899999999999877666667787665543 35799999998776433211 1257899999
Q ss_pred EEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecC------CCCc
Q 022918 166 YFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWS------DGSY 239 (290)
Q Consensus 166 ~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~------dgs~ 239 (290)
+|++|+.|++++++|+|+||++.++|||||++||.|+++|+||+||||++|++ |++|+|+|+|.+.. .|.+
T Consensus 72 ~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~~l~~---G~~n~L~V~v~n~~~~~~~p~g~~ 148 (604)
T PRK10150 72 EVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITPYVYA---GKSVRITVCVNNELNWQTLPPGNV 148 (604)
T ss_pred EEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCchhccC---CCceEEEEEEecCCCcccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999 86569999997642 2444
Q ss_pred ccC----------CCCCccccccccceeeEecCccEEeEEEEEeecCCceeEEEEEEEe
Q 022918 240 LED----------QDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTC 288 (290)
Q Consensus 240 led----------qd~w~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~l~v~v~ 288 (290)
.++ +|+|..+||||+|+|+.+|++||+|++|+++++.+.+.|+|+|++.
T Consensus 149 ~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~~~~~i~dv~v~~~~~~~~~~a~v~v~v~ 207 (604)
T PRK10150 149 IEDGNGKKKQKYNFDFFNYAGIHRPVMLYTTPKTHIDDITVVTELAQDLNHASVDWSVE 207 (604)
T ss_pred ccCCccccccccccccccccCCCceEEEEEcCCccCceEEEEeecCCcCceEEEEEEEE
Confidence 432 5777899999999999999999999999999987767777776653
No 5
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.4e-29 Score=255.19 Aligned_cols=197 Identities=41% Similarity=0.629 Sum_probs=180.7
Q ss_pred CCceEecCccceEEeecCCCCCCccccCCCCCCCCCeEecCCccccccc-CCCCcccccccCCCCCCCCCCCCCCeEEEE
Q 022918 86 LPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHG-FDRPIYTNVVYPFPLDPPNVPAENPTGCYR 164 (290)
Q Consensus 86 s~~~~sLnG~WkF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g-~~~p~y~n~~yp~~~~pp~vp~~~~~gwYr 164 (290)
++..++|||.|.|++.+.+...|..|.....+++ ..|.||++|++++ ++.++|+|..||++..+|.++..++++.|.
T Consensus 9 ~~~~~~L~G~W~f~~~~~~~~~~~~w~~~~~s~~--~~i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~f 86 (808)
T COG3250 9 SREIKSLNGLWAFSLDDEPCAVPQRWPESLLSES--RAIAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVPAGNRIGLYF 86 (808)
T ss_pred ccceeccCCceeEEecCCccccccccchhhhhhc--cCccCCccHhhcCccCcceecceeeeecccCCccccCCceEEEE
Confidence 3467999999999999888888999977665544 3899999999999 999999999999999999998889999999
Q ss_pred EEEEcCCCC-CCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCC
Q 022918 165 TYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQ 243 (290)
Q Consensus 165 r~F~lp~~~-~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledq 243 (290)
+.|++.++| .+..+.|.|+|+.+.++|||||+.||++.+++.++++|||+++++ |. |.+++.|.+|+++++.++|
T Consensus 87 ~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~~~~~~~~~~~~dis~~~~~---~~-~~~~~~v~~~~~~~~~~~~ 162 (808)
T COG3250 87 DAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVGGGKDSRITVEFDISPNLQT---GP-NGLVVTVENWSKGSYYEDQ 162 (808)
T ss_pred eccccceeEEeCCeEEEEecCceeEEEEeeccceecCCcceEEEEeecccccccc---CC-ccCceEEeccCCCCCcccc
Confidence 999998876 577999999999999999999999999999999999999999999 85 9999999999999999999
Q ss_pred CCCccccccccceeeEecCccEEeEEEEEeecCCceeEEEEEEEe
Q 022918 244 DHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTC 288 (290)
Q Consensus 244 d~w~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~l~v~v~ 288 (290)
||||++||+|||+|+.+|.+||.|++|.|+++.....+.+.+++.
T Consensus 163 d~~r~aGi~RdV~l~i~p~~~~~di~V~t~~~~~~~~~~~~~~~~ 207 (808)
T COG3250 163 DFFRYAGIHRDVMLYITPNTHVDDITVVTHLAEDCNHASLDVKIQ 207 (808)
T ss_pred CeeecccccceeEEEEccceeEeeeEEEEecchhhhhhheeehee
Confidence 999999999999999999999999999999998888888774443
No 6
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.5e-15 Score=135.14 Aligned_cols=177 Identities=25% Similarity=0.397 Sum_probs=135.1
Q ss_pred CCCceEecCccceEEeecCCCCC---CccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeE
Q 022918 85 GLPFVKSLSGHWKFFLASSPPDV---PLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTG 161 (290)
Q Consensus 85 ~s~~~~sLnG~WkF~~~~~~~~~---p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~g 161 (290)
.++...+|+|-|.|..+.+.... -+.|+.... ..-..++||++++..|.+.+.. . .-+..
T Consensus 28 pire~~~ldgLw~f~r~~~~~~~~g~~~~w~~~~~--~~t~~mpvpss~nDi~~d~~lr-----------d----fv~~~ 90 (297)
T KOG2024|consen 28 PIREVKSLDGLWSFVRDSNQNRLQGILEQWENKES--GPTQDMPVPSSFNDIGQDWRLR-----------D----FVGLV 90 (297)
T ss_pred cchhhhhhCcchhcccCcccccchhHHhhhccccc--ccccccccccchhccccCCccc-----------c----ceeee
Confidence 56788899999999987664332 245554322 1224689999998877654321 1 24678
Q ss_pred EEEEEEEcCCCC---CCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCC
Q 022918 162 CYRTYFHIPKEW---QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGS 238 (290)
Q Consensus 162 wYrr~F~lp~~~---~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs 238 (290)
||.|++.+|+.| .++++.|||..+++.+.|||||..+-.|++++.|++-+|...++. |..|.+--....+ .+.
T Consensus 91 wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~---g~~~~~dn~L~~~-t~~ 166 (297)
T KOG2024|consen 91 WYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFF---GPLPAIDNNLLSW-TGP 166 (297)
T ss_pred EEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhc---cccccccCccccc-ccC
Confidence 999999999998 478999999999999999999999999999999999999998888 7656222222222 122
Q ss_pred cccCCCCCccccccccceeeEecCccEEeEEEEEeecCCceeEE
Q 022918 239 YLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLAD 282 (290)
Q Consensus 239 ~ledqd~w~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~ 282 (290)
-..+.|++.++||.|.|-|+.+|.++|+|+.|.+.+..+...|.
T Consensus 167 ~~~~~dffnYag~~~sv~l~t~p~vyi~~~~v~t~l~~~~~~a~ 210 (297)
T KOG2024|consen 167 NSFCFDFFNYAGEQRSVCLYTTPVVYIEDITVTTGLPHDSGCAS 210 (297)
T ss_pred CcccccCCCchhhheeeeeccCCeEEecCcceeeccccCCccee
Confidence 23466899999999999999999999999999998876654443
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=7.5e-10 Score=108.88 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=118.6
Q ss_pred ceEecCccceEEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCC-CCCCCCCCCCCCeEEEEEE
Q 022918 88 FVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPF-PLDPPNVPAENPTGCYRTY 166 (290)
Q Consensus 88 ~~~sLnG~WkF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~-~~~pp~vp~~~~~gwYrr~ 166 (290)
..++|.|.|+|.-....-. .+-.|||+.....|..-+..|-.|-+ ..+-.+|. ...+.|.|+
T Consensus 21 ~t~~l~gnw~~~~~n~t~~---------------~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia--~d~wtysr~ 83 (867)
T KOG2230|consen 21 NTLVLAGNWEFSSSNKTVN---------------GTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIA--EDDWTYSRK 83 (867)
T ss_pred eeEEEecceEEecCCCcee---------------cCCCCCchHhHHHHhcccccCccccccccceeEEe--ccCccceee
Confidence 5678999999986543211 23479998866543222222211111 12222332 234779999
Q ss_pred EEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecC-------C---
Q 022918 167 FHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWS-------D--- 236 (290)
Q Consensus 167 F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~-------d--- 236 (290)
|.|=+--+-..++|.+|+||+.+.||+||+.|+.+.++|.|+.|+||..+. | +|.|+++..... +
T Consensus 84 frl~dl~~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~ii~----~-~n~i~~~f~ssv~yA~~~~~~~~ 158 (867)
T KOG2230|consen 84 FRLIDLDDTVGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTDIIA----G-ENDITIKFKSSVKYAEKRADEYK 158 (867)
T ss_pred eEEEEccccccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEEEec----C-CcceEEEeehhHHHHHHHHHhhh
Confidence 998443344678999999999999999999999999999999999999765 5 599999887521 0
Q ss_pred -CC---------c-ccC--------CC--CC------ccccccccceeeEecCccEEeEEEEEeecCCceeEEE
Q 022918 237 -GS---------Y-LED--------QD--HW------WLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADI 283 (290)
Q Consensus 237 -gs---------~-led--------qd--~w------~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~l 283 (290)
-+ | -|| |. .| ...||+.+|.|.+..-.++.|+.+++..+....+..+
T Consensus 159 k~svPPdC~p~iyhGECH~NfiRK~Q~SFsWDWGPsfPt~GI~k~v~i~iY~~~~~~~f~~~~~~~~g~w~~~~ 232 (867)
T KOG2230|consen 159 KHSLPPDCNPDIYHGECHQNFIRKAQYSFAWDWGPSFPTVGIPSTITINIYRGQYFHDFNWKTRFAHGKWKVAF 232 (867)
T ss_pred ccCCCCCCCchhhccchHHHHHHHhhcceecccCCCCccCCCCcceEEEEEeeeEEEeeceeeeeecceeeEEE
Confidence 00 0 011 32 23 2599999999999999999999998887765444333
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.94 E-value=5.8e-05 Score=60.61 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCCeEEEEEEEEcCCCCCCCeEE-EEe-CCccceeEEEEcCEEeeecc-CCCCceeecccc-ccccCCCCCceEEEEEEE
Q 022918 157 ENPTGCYRTYFHIPKEWQGRRIL-LHF-EAVDSAFCAWINGVPVGYSQ-DSRLPAEFEISD-YCYPHGSDKKNVLAVQVF 232 (290)
Q Consensus 157 ~~~~gwYrr~F~lp~~~~~~~v~-L~f-egv~s~~~VwvNG~~VG~~~-~~~~p~efDIT~-~Lk~~~~G~eN~L~V~V~ 232 (290)
..+..|||.+|..... ...+. |.. .|-...+.|||||+++|... +.-....|.|+. .|+. + .|.|+|.+.
T Consensus 33 ~~g~~~Yrg~F~~~~~--~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~---~-n~v~~vl~~ 106 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQ--DTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKY---G-NNVLVVLWD 106 (111)
T ss_dssp SSCEEEEEEEEETTTE--EEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTT---C-EEEEEEEEE
T ss_pred CCCCEEEEEEEeCCCc--ceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecC---C-CEEEEEEEe
Confidence 3789999999964221 13444 444 36677899999999999866 333336777777 6776 6 467777766
Q ss_pred e
Q 022918 233 R 233 (290)
Q Consensus 233 ~ 233 (290)
+
T Consensus 107 ~ 107 (111)
T PF13364_consen 107 N 107 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 9
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=3.6e-05 Score=80.70 Aligned_cols=71 Identities=27% Similarity=0.242 Sum_probs=63.5
Q ss_pred CeEEEEEEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEe
Q 022918 159 PTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 159 ~~gwYrr~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
...+|.++|.+|....++++.|.|++++.-++||+||+.++.++|+|++|+++|+..+.. | +|.+.+.+..
T Consensus 63 ~~~~y~~~~~~~~~~~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~---~-~~~~~~~~~~ 133 (808)
T COG3250 63 TNVWYPREVFPPKVPAGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVG---G-GKDSRITVEF 133 (808)
T ss_pred cceeeeecccCCccccCCceEEEEeccccceeEEeCCeEEEEecCceeEEEEeeccceec---C-CcceEEEEee
Confidence 347899999999888899999999999999999999999999999999999999976655 5 4888888775
No 10
>PLN03059 beta-galactosidase; Provisional
Probab=97.71 E-value=0.0002 Score=74.95 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCCeEEEEEEEEcCCCC----CCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeecccc--ccccCCCCCceEEEEE
Q 022918 157 ENPTGCYRTYFHIPKEW----QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISD--YCYPHGSDKKNVLAVQ 230 (290)
Q Consensus 157 ~~~~gwYrr~F~lp~~~----~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~--~Lk~~~~G~eN~L~V~ 230 (290)
..+..|||++|.++..- .+....|++..+...+.|||||+++|...+...-..|.+.. -|+. |. |+|.|.
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~---g~-n~L~iL 543 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTV---GI-NKISLL 543 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCC---Cc-eEEEEE
Confidence 36789999999997642 24567899999999999999999999865544443444432 3667 85 999999
Q ss_pred EEecC---CCCcccCCCCCccccccccceeeE
Q 022918 231 VFRWS---DGSYLEDQDHWWLSGIHRDVLLLA 259 (290)
Q Consensus 231 V~~~~---dgs~ledqd~w~~sGI~RdV~L~~ 259 (290)
|.+-. -|.+++++ ..||.++|.|..
T Consensus 544 se~vG~~NyG~~le~~----~kGI~g~V~i~g 571 (840)
T PLN03059 544 SVAVGLPNVGLHFETW----NAGVLGPVTLKG 571 (840)
T ss_pred EEeCCCCccCcccccc----cccccccEEEec
Confidence 99753 25666643 399999999965
No 11
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=97.45 E-value=0.0002 Score=61.73 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=34.7
Q ss_pred eEEEEeCCccceeEEEEcCEEeeecc---C--CCCc----eeeccccccccCCCCCceEEEEEEEe
Q 022918 177 RILLHFEAVDSAFCAWINGVPVGYSQ---D--SRLP----AEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 177 ~v~L~fegv~s~~~VwvNG~~VG~~~---~--~~~p----~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
+..|++-+ +..+++||||+.||... + .|.- -.||||++|+. | +|.|+|.|.+
T Consensus 5 ~A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~---G-~N~iav~lg~ 65 (172)
T PF08531_consen 5 SARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRP---G-ENVIAVWLGN 65 (172)
T ss_dssp --EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--T---T-EEEEEEEEEE
T ss_pred EEEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCC---C-CCEEEEEEeC
Confidence 45666655 45799999999999754 1 1111 37899999999 9 5999999976
No 12
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.041 Score=56.15 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=57.9
Q ss_pred eEEEEeC-CccceeEEEEcCEEeeeccCCCCceeecccc--ccccCCCCCceEEEEEEEecC---CCCcccCCCCCcccc
Q 022918 177 RILLHFE-AVDSAFCAWINGVPVGYSQDSRLPAEFEISD--YCYPHGSDKKNVLAVQVFRWS---DGSYLEDQDHWWLSG 250 (290)
Q Consensus 177 ~v~L~fe-gv~s~~~VwvNG~~VG~~~~~~~p~efDIT~--~Lk~~~~G~eN~L~V~V~~~~---dgs~ledqd~w~~sG 250 (290)
...|.+. ++..+.+|||||+++|...+.+.-..+.+.. -|+. | +|.|++.+.+-. -| +.+. +..|
T Consensus 434 ~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~---g-~n~l~iL~~~~G~~n~G-~~e~----~~~G 504 (649)
T KOG0496|consen 434 TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKA---G-ENKLALLSENVGLPNYG-HFEN----DFKG 504 (649)
T ss_pred CceEeecccccceEEEEECCEEeeeEeccccceeEEeeccccccc---C-cceEEEEEEecCCCCcC-cccc----cccc
Confidence 5567777 9999999999999999988887666666554 3566 8 599999998753 23 3443 3599
Q ss_pred ccccceeeEe
Q 022918 251 IHRDVLLLAK 260 (290)
Q Consensus 251 I~RdV~L~~~ 260 (290)
|.++|+|...
T Consensus 505 i~g~v~l~g~ 514 (649)
T KOG0496|consen 505 ILGPVYLNGL 514 (649)
T ss_pred cccceEEeee
Confidence 9999999876
No 13
>PLN03059 beta-galactosidase; Provisional
Probab=95.57 E-value=0.027 Score=59.43 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=48.7
Q ss_pred CCeEEEEEEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccC---------------CC----------Cc--eee
Q 022918 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQD---------------SR----------LP--AEF 210 (290)
Q Consensus 158 ~~~gwYrr~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~---------------~~----------~p--~ef 210 (290)
.+..||+.+|++|+. +.-++|.+.|- .-..|||||+-||.--. .| -| .-+
T Consensus 618 ~p~twYK~~Fd~p~g--~Dpv~LDm~gm-GKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lY 694 (840)
T PLN03059 618 QPLTWYKTTFDAPGG--NDPLALDMSSM-GKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWY 694 (840)
T ss_pred CCceEEEEEEeCCCC--CCCEEEecccC-CCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEE
Confidence 458999999999873 33499999995 56889999999996431 11 22 335
Q ss_pred cccc-ccccCCCCCceEEEEE
Q 022918 211 EISD-YCYPHGSDKKNVLAVQ 230 (290)
Q Consensus 211 DIT~-~Lk~~~~G~eN~L~V~ 230 (290)
-|+. +||+ |+ |+|+|-
T Consensus 695 HVPr~~Lk~---g~-N~lViF 711 (840)
T PLN03059 695 HVPRSWLKP---SG-NLLIVF 711 (840)
T ss_pred eCcHHHhcc---CC-ceEEEE
Confidence 6775 8999 85 988765
No 14
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.1 Score=53.42 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=51.6
Q ss_pred CCeEEEEEEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCc-eeecccc-ccccCCCCCceEEEEEEE
Q 022918 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP-AEFEISD-YCYPHGSDKKNVLAVQVF 232 (290)
Q Consensus 158 ~~~gwYrr~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p-~efDIT~-~Lk~~~~G~eN~L~V~V~ 232 (290)
.|..||. .|++|+. ...++|.+.| -.-..|||||+-||..--++-| ..+-|+. +||+ |+ |.|+|-=.
T Consensus 556 ~P~~w~k-~f~~p~g--~~~t~Ldm~g-~GKG~vwVNG~niGRYW~~~G~Q~~yhvPr~~Lk~---~~-N~lvvfEe 624 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSG--SEPTALDMNG-WGKGQVWVNGQNIGRYWPSFGPQRTYHVPRSWLKP---SG-NLLVVFEE 624 (649)
T ss_pred CCeEEEE-EecCCCC--CCCeEEecCC-CcceEEEECCcccccccCCCCCceEEECcHHHhCc---CC-ceEEEEEe
Confidence 4667887 9999986 4579999999 4678999999999976554444 4566776 8998 85 98877544
No 15
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=92.32 E-value=1.7 Score=35.13 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCeEEEEEEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCC-------ceeeccccccccCCCCCceEEEEE
Q 022918 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRL-------PAEFEISDYCYPHGSDKKNVLAVQ 230 (290)
Q Consensus 158 ~~~gwYrr~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~-------p~efDIT~~Lk~~~~G~eN~L~V~ 230 (290)
+-..-++-.|.+|.. ..+.+.+. .+..++|||||+.|..+.+... +....-+-.|.. |+...|.|.
T Consensus 45 ~~~~~~~G~~~~~~~---G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~---g~~y~i~i~ 117 (145)
T PF07691_consen 45 NFSVRWTGYFKPPET---GTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEA---GGKYPIRIE 117 (145)
T ss_dssp SEEEEEEEEEEESSS---EEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-T---T-EEEEEEE
T ss_pred eEEEEEEEEEecccC---ceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeC---CeeEEEEEE
Confidence 556779999999874 56777777 4667999999999987765433 222222224555 656889998
Q ss_pred EEecCC
Q 022918 231 VFRWSD 236 (290)
Q Consensus 231 V~~~~d 236 (290)
..+...
T Consensus 118 y~~~~~ 123 (145)
T PF07691_consen 118 YFNRGG 123 (145)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 887643
No 16
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=89.02 E-value=0.87 Score=39.16 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=38.2
Q ss_pred EEEEEEEEcCCCCCCC--eEEEEeCCc--cceeEEEEcCEEeee-----------------ccCCCCceeecccc-cccc
Q 022918 161 GCYRTYFHIPKEWQGR--RILLHFEAV--DSAFCAWINGVPVGY-----------------SQDSRLPAEFEISD-YCYP 218 (290)
Q Consensus 161 gwYrr~F~lp~~~~~~--~v~L~fegv--~s~~~VwvNG~~VG~-----------------~~~~~~p~efDIT~-~Lk~ 218 (290)
+-.+-.|.+++...++ .+.|.+-++ .....|.||| .++. +.|-+.-++|+|+. .|+.
T Consensus 63 ~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~ 141 (167)
T PF14683_consen 63 GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKA 141 (167)
T ss_dssp --EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-S
T ss_pred CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEe
Confidence 5567778887665333 333444333 3467899999 4432 22566778999987 8898
Q ss_pred CCCCCceEEEEEEEec
Q 022918 219 HGSDKKNVLAVQVFRW 234 (290)
Q Consensus 219 ~~~G~eN~L~V~V~~~ 234 (290)
|. |+|.+.+.+-
T Consensus 142 ---G~-Nti~lt~~~g 153 (167)
T PF14683_consen 142 ---GE-NTITLTVPSG 153 (167)
T ss_dssp ---EE-EEEEEEEE-S
T ss_pred ---cc-EEEEEEEccC
Confidence 94 9999999874
No 17
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=88.54 E-value=1.9 Score=44.24 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=50.8
Q ss_pred EEEEEEEEcCCCCCCCeEE--EEeC------CccceeEEEEcCEEeeec----cCC-CCceeeccccccccCCCCCceEE
Q 022918 161 GCYRTYFHIPKEWQGRRIL--LHFE------AVDSAFCAWINGVPVGYS----QDS-RLPAEFEISDYCYPHGSDKKNVL 227 (290)
Q Consensus 161 gwYrr~F~lp~~~~~~~v~--L~fe------gv~s~~~VwvNG~~VG~~----~~~-~~p~efDIT~~Lk~~~~G~eN~L 227 (290)
+-..-.|.+|..|.-+... |+|. .-.+...|+|||+.||.- .+. ....+++|...+.. | .|+|
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~---g-~N~l 104 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIK---G-FNRL 104 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcC---C-ceEE
Confidence 3445567888887544444 4432 223678999999999973 233 56788999987877 8 4999
Q ss_pred EEEEEecCC
Q 022918 228 AVQVFRWSD 236 (290)
Q Consensus 228 ~V~V~~~~d 236 (290)
.|++.....
T Consensus 105 ~~~~~~~~~ 113 (605)
T PF03170_consen 105 TFEFIGHYT 113 (605)
T ss_pred EEEEEeccc
Confidence 999987643
No 18
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=87.13 E-value=6.3 Score=31.71 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCeEEEEEEEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCC-ceeeccccccccCCCCCceEEEEEEEec
Q 022918 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRL-PAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 158 ~~~gwYrr~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~-p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
+-...+.-.|.+|+. ....+.+.+ +..+++||||+.|-.+.+... ..+.-.+-.|.. |+...|.|.....
T Consensus 43 ~f~~~~~g~i~~~~~---G~y~f~~~~-~~~~~l~Idg~~vid~~~~~~~~~~~~~~v~l~~---g~~~~i~v~y~~~ 113 (136)
T smart00758 43 NFSVRWTGYLKPPED---GEYTFSITS-DDGARLWIDGKLVIDNWGKHEARPSTSSTLYLLA---GGTYPIRIEYFEA 113 (136)
T ss_pred cEEEEEEEEEECCCC---ccEEEEEEc-CCcEEEEECCcEEEcCCccCCCccccceeEEEeC---CcEEEEEEEEEeC
Confidence 445778888988874 457778855 667999999999987543322 111111223455 6568888877654
No 19
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=86.93 E-value=1.4 Score=31.78 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=29.1
Q ss_pred EEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEec
Q 022918 180 LHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 180 L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
|.+...-..+.|||||+++|. +|.++. .|.+ |. +.|.|+-..+
T Consensus 4 l~V~s~p~gA~V~vdg~~~G~-----tp~~~~---~l~~---G~-~~v~v~~~Gy 46 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIGT-----TPLTLK---DLPP---GE-HTVTVEKPGY 46 (71)
T ss_pred EEEEEECCCCEEEECCEEecc-----Ccceee---ecCC---cc-EEEEEEECCC
Confidence 455555567999999999994 444333 1456 84 8888887543
No 20
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=86.20 E-value=2.3 Score=43.64 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=50.0
Q ss_pred EEEEEcCCC---CCCCeEEEEeCC--------ccceeEEEEcCEEeeec------cCCCCceeeccccccccCCCCCceE
Q 022918 164 RTYFHIPKE---WQGRRILLHFEA--------VDSAFCAWINGVPVGYS------QDSRLPAEFEISDYCYPHGSDKKNV 226 (290)
Q Consensus 164 rr~F~lp~~---~~~~~v~L~feg--------v~s~~~VwvNG~~VG~~------~~~~~p~efDIT~~Lk~~~~G~eN~ 226 (290)
+-.|.+|.+ |.++.+.|++.. -.+...|+|||++|+.- ......+++.|+.++.. |. |+
T Consensus 327 ~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~---~~-N~ 402 (605)
T PF03170_consen 327 SFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLP---GR-NQ 402 (605)
T ss_pred eeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcC---CC-cE
Confidence 446788885 566776666543 25678899999999862 35566788999988888 84 99
Q ss_pred EEEEEEec
Q 022918 227 LAVQVFRW 234 (290)
Q Consensus 227 L~V~V~~~ 234 (290)
|.|++.-.
T Consensus 403 l~~~f~l~ 410 (605)
T PF03170_consen 403 LQFEFDLP 410 (605)
T ss_pred EEEEEEee
Confidence 99999754
No 21
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=82.25 E-value=4.9 Score=42.57 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred EEEEEcCCCCCCC--eEEEEeC------CccceeEEEEcCEEeeecc------CCCCceeeccccccccCCCCCceEEEE
Q 022918 164 RTYFHIPKEWQGR--RILLHFE------AVDSAFCAWINGVPVGYSQ------DSRLPAEFEISDYCYPHGSDKKNVLAV 229 (290)
Q Consensus 164 rr~F~lp~~~~~~--~v~L~fe------gv~s~~~VwvNG~~VG~~~------~~~~p~efDIT~~Lk~~~~G~eN~L~V 229 (290)
+-.|.+|.+|.-. ++.|++. .-.+...|.|||+.||.-. +.....+++|...+.. | .|+|.+
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~---g-~N~L~~ 159 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFIT---D-FNRLRL 159 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcC---C-CceEEE
Confidence 5567788777433 4444422 2247889999999998631 3345678999887667 8 499999
Q ss_pred EEEecCC
Q 022918 230 QVFRWSD 236 (290)
Q Consensus 230 ~V~~~~d 236 (290)
++.....
T Consensus 160 ~~~~~~~ 166 (756)
T PRK11114 160 EFIGHYT 166 (756)
T ss_pred EEecCCC
Confidence 9886544
No 22
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.90 E-value=10 Score=28.56 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEE
Q 022918 174 QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAV 229 (290)
Q Consensus 174 ~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V 229 (290)
+...+.|...|-....+-||||+++|...... +..+.. ..+ |+ ++|+|
T Consensus 30 ~~~~l~l~a~~~~~~~~W~vdg~~~g~~~~~~-~~~~~~---~~~---G~-h~l~v 77 (89)
T PF06832_consen 30 ERQPLVLKAAGGRGPVYWFVDGEPLGTTQPGH-QLFWQP---DRP---GE-HTLTV 77 (89)
T ss_pred ccceEEEEEeCCCCcEEEEECCEEcccCCCCC-eEEeCC---CCC---ee-EEEEE
Confidence 46788888888877899999999998765432 222222 245 84 88888
No 23
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=70.17 E-value=20 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceE-EEEEEEec
Q 022918 166 YFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNV-LAVQVFRW 234 (290)
Q Consensus 166 ~F~lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~-L~V~V~~~ 234 (290)
++.+|.. -..+.|.....+..+.|.|||..+... -.+..+.| .. |. |. |.|.|...
T Consensus 17 ~~~V~~~--~~~v~v~a~~~~~~a~v~vng~~~~~~---~~~~~i~L----~~---G~-n~~i~i~Vta~ 73 (88)
T PF12733_consen 17 TVTVPND--VDSVTVTATPEDSGATVTVNGVPVNSG---GYSATIPL----NE---GE-NTVITITVTAE 73 (88)
T ss_pred EEEECCC--ceEEEEEEEECCCCEEEEEcCEEccCC---CcceeeEc----cC---CC-ceEEEEEEEcC
Confidence 3456654 356888887778999999999987543 12233444 46 84 98 99999653
No 24
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=61.88 E-value=6.7 Score=28.23 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=11.8
Q ss_pred EEEcCEEeeeccC
Q 022918 191 AWINGVPVGYSQD 203 (290)
Q Consensus 191 VwvNG~~VG~~~~ 203 (290)
|+|||..+|.+++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999999874
No 25
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=59.91 E-value=30 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred cceeEEEEcCEEeeecc-CCCCceeeccccccccCCCCCceEEEE
Q 022918 186 DSAFCAWINGVPVGYSQ-DSRLPAEFEISDYCYPHGSDKKNVLAV 229 (290)
Q Consensus 186 ~s~~~VwvNG~~VG~~~-~~~~p~efDIT~~Lk~~~~G~eN~L~V 229 (290)
.....|||||+.||... +.| +.++++ + |+ ++|..
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y--~~~~v~----p---G~-h~i~~ 74 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGY--FYVEVP----P---GK-HTISA 74 (117)
T ss_pred cccceEEECCEEEEEeCCCeE--EEEEEC----C---Cc-EEEEE
Confidence 45788999999999864 333 334444 4 74 77666
No 26
>PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc). PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage.
Probab=58.63 E-value=21 Score=35.36 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=35.6
Q ss_pred CccceeEEEEcCEEeeec--------cC---------------CCCceeeccccccccCCCCCceEEEEEEEec
Q 022918 184 AVDSAFCAWINGVPVGYS--------QD---------------SRLPAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 184 gv~s~~~VwvNG~~VG~~--------~~---------------~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
|.-....|+|||+.+|.- .| ...++++|||++|-.=-+|+.+.|.|+|.+-
T Consensus 218 gpfReV~V~iDg~lag~~~PfPvIfTGGI~P~lWrPI~~i~aFdl~~y~iDlTPfLp~L~dg~~h~~~i~V~~~ 291 (427)
T PF12222_consen 218 GPFREVQVYIDGQLAGVVWPFPVIFTGGINPFLWRPIVGIGAFDLPSYDIDLTPFLPLLWDGKPHTFEIRVVNA 291 (427)
T ss_pred CCcEEEEEEECCEEEEEECCCCeEEeCCcCcccccccCCCcccCCCceeEEeccchhcccCCCccEEEEEEEcc
Confidence 455567899999999852 11 2345899999976210127778999999974
No 27
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=58.04 E-value=23 Score=26.73 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=27.5
Q ss_pred CCeEEEEEEEEcCCCC-CCCeEEEEeCCccceeEEEE--cCEEee
Q 022918 158 NPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWI--NGVPVG 199 (290)
Q Consensus 158 ~~~gwYrr~F~lp~~~-~~~~v~L~fegv~s~~~Vwv--NG~~VG 199 (290)
+..-.|+|.|..|+.. ..+++.|+|.+ +....|-- ||..++
T Consensus 38 ~~i~i~~R~F~F~Dg~e~~~~~~l~f~~-~~V~~i~~~~~g~~l~ 81 (85)
T PF14814_consen 38 NRIEIYTRGFDFPDGQEPARRVRLTFSG-GRVSSIQDLDNGRDLG 81 (85)
T ss_dssp TEEEEEE--EEETTCEE--EEEEEEEET-TEEEEEEETTTTEE-S
T ss_pred CEEEEEECCCCCCCCCccCEEEEEEECC-CEEEEEEEcCCCCccC
Confidence 5678899999999865 46789999998 55666655 576665
No 28
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A.
Probab=49.40 E-value=24 Score=29.35 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=24.8
Q ss_pred eEEEEeCCccceeEEEEcCEEeeec-------cCCCCceeeccccccccCCCCCceEEEEEEEe
Q 022918 177 RILLHFEAVDSAFCAWINGVPVGYS-------QDSRLPAEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 177 ~v~L~fegv~s~~~VwvNG~~VG~~-------~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
..-+.|. ...+|+|||+.|-.. .|.- --+|||++|+.. ++..|.|.|.=..
T Consensus 74 ~q~i~FP---~~~evkvN~~~v~~~~~glknKpGt~--rPvdIT~~l~~~-~~~~N~i~v~y~~ 131 (144)
T PF14324_consen 74 NQPIEFP---PPCEVKVNGKQVKLNNRGLKNKPGTA--RPVDITPYLRLS-PPQTNRIEVTYAN 131 (144)
T ss_dssp GB--------SSEEEEETTEE--S--SS-TTS-GGG--S-EE-GGG---S--SS-EEEEEEEEE
T ss_pred ccccccC---CCeEEEEeCEEcccCccCCCCCCCCC--CCcccchhhccc-CCCCeEEEEEEeC
Confidence 4445555 368999999999531 2443 347999999762 1446988887554
No 29
>PF11824 DUF3344: Protein of unknown function (DUF3344); InterPro: IPR021779 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 367 to 1857 amino acids in length.
Probab=44.70 E-value=57 Score=30.19 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=17.0
Q ss_pred eeeccccccccCCCCCceEEEEEEE
Q 022918 208 AEFEISDYCYPHGSDKKNVLAVQVF 232 (290)
Q Consensus 208 ~efDIT~~Lk~~~~G~eN~L~V~V~ 232 (290)
+-+|||++++. | +|.+.|.-.
T Consensus 112 ~vYDVT~~i~~---g-~n~~~v~~~ 132 (271)
T PF11824_consen 112 WVYDVTDLIKS---G-ENTVTVTTG 132 (271)
T ss_pred EEEECcccccC---C-ceEEEEEeC
Confidence 44899999998 8 499888773
No 30
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=41.72 E-value=38 Score=24.17 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=24.5
Q ss_pred eeEEEEcCEEe-----eeccCCC-Cceeecccc-cc-ccCCCCCceEEEEEEEecC
Q 022918 188 AFCAWINGVPV-----GYSQDSR-LPAEFEISD-YC-YPHGSDKKNVLAVQVFRWS 235 (290)
Q Consensus 188 ~~~VwvNG~~V-----G~~~~~~-~p~efDIT~-~L-k~~~~G~eN~L~V~V~~~~ 235 (290)
-..|.|||+.. +..+... ..-.+.|.. .+ +. | +|+|+|...-+.
T Consensus 8 I~~V~VNg~~y~~~~~~~~~y~~~~~~~l~i~~~~f~~~---G-~~~I~I~A~GY~ 59 (65)
T PF07550_consen 8 ITSVTVNGKEYNKSLKGNDKYSISSKGSLKIKASAFNKD---G-ENTIVIKATGYK 59 (65)
T ss_pred CCEEEECCEEeeccccccccEEeccCCcEEEcHHHcCcC---C-ceEEEEEeCCcc
Confidence 35689999998 3221111 111144443 34 55 7 599999886543
No 31
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=39.35 E-value=61 Score=34.44 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=23.8
Q ss_pred EEEEEcCCC---CCCCeEE--EEeC------CccceeEEEEcCEEeee
Q 022918 164 RTYFHIPKE---WQGRRIL--LHFE------AVDSAFCAWINGVPVGY 200 (290)
Q Consensus 164 rr~F~lp~~---~~~~~v~--L~fe------gv~s~~~VwvNG~~VG~ 200 (290)
+-.|.+|.+ |+++.+- |++. .-++...|+|||++|+.
T Consensus 379 ~~~~~lPpDl~~~~~~~i~l~L~yryt~~~~~~~S~l~V~vN~~~i~S 426 (756)
T PRK11114 379 RVNLRLPPDLFLWRGDGIPLDLNYRYTAPPVRDDSRLNISLNDQFVQS 426 (756)
T ss_pred eEcccCCccccccCCCCCceEEEEeCCCCCCCCCcEEEEEECCEEEee
Confidence 455666765 4555543 4431 12367899999999985
No 32
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=37.83 E-value=40 Score=27.15 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=19.9
Q ss_pred eEEEEeCCccceeEEEEcCEEeeecc
Q 022918 177 RILLHFEAVDSAFCAWINGVPVGYSQ 202 (290)
Q Consensus 177 ~v~L~fegv~s~~~VwvNG~~VG~~~ 202 (290)
+|.+.+++......+||||++++...
T Consensus 65 hva~v~d~~~g~~~lYvnG~~~~~~~ 90 (133)
T smart00560 65 HLAGVYDGGAGKLSLYVNGVEVATSE 90 (133)
T ss_pred EEEEEEECCCCeEEEEECCEEccccc
Confidence 56666777667789999999997543
No 33
>PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 1PNF_A 1PNG_A 1PGS_A 3KS7_D 3PMS_A.
Probab=37.54 E-value=92 Score=26.07 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=37.7
Q ss_pred EEEEEEEcCCCCCCCeEEEEeCC-----------ccceeEEEEcCEEeeecc-----------------C----------
Q 022918 162 CYRTYFHIPKEWQGRRILLHFEA-----------VDSAFCAWINGVPVGYSQ-----------------D---------- 203 (290)
Q Consensus 162 wYrr~F~lp~~~~~~~v~L~feg-----------v~s~~~VwvNG~~VG~~~-----------------~---------- 203 (290)
.-..+|++|+..+.-++.+.+-| +...-.|+|||+++-... |
T Consensus 11 ~~~~~f~lp~~~k~~~L~~iiTGHG~~~~gc~EFc~~~h~~~vnG~~~f~~~~~~~~Ca~~~~~n~~p~G~w~~~Rs~WC 90 (141)
T PF09113_consen 11 RLPVNFTLPANAKNARLRYIITGHGSGNNGCDEFCPKSHHFYVNGKEVFSFAPWRDDCASNRLYNPAPSGTWLYSRSNWC 90 (141)
T ss_dssp SEEEEEEE-TT-SEEEEEEEEEEEEETTEEEETTS-EEEEEEETTEEEEEEEE-BS-GGGGSGG-TTT-SCESS-BSS--
T ss_pred ceeEEEECCcccceEEEEEEEecCCCCCCCcceecccccEEEECCeEeeecCCCccchhhccccCccccceEecCCCCCC
Confidence 44568999987544444433322 223457999999993211 1
Q ss_pred --C-CCceeeccccccccCCCCCceEEEEEEEe
Q 022918 204 --S-RLPAEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 204 --~-~~p~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
+ -.|.++||++++. |+ +++.|.|.-
T Consensus 91 PG~~v~p~~~dl~~~~~----g~-ht~~~~i~~ 118 (141)
T PF09113_consen 91 PGMVVDPWRIDLTDAVA----GG-HTFSVDIPY 118 (141)
T ss_dssp TTEEE--EEEEEE-GGG----TT-SEEEEEEET
T ss_pred CCCCCCceEeccccccC----CC-ceEEEEecc
Confidence 1 1278899998775 54 878777763
No 34
>PF11824 DUF3344: Protein of unknown function (DUF3344); InterPro: IPR021779 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 367 to 1857 amino acids in length.
Probab=34.20 E-value=66 Score=29.75 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=33.9
Q ss_pred EEeCCccceeEEEEcCEEeeecc--CCCCc-eeeccccccccCCCCCceEEEEEE
Q 022918 180 LHFEAVDSAFCAWINGVPVGYSQ--DSRLP-AEFEISDYCYPHGSDKKNVLAVQV 231 (290)
Q Consensus 180 L~fegv~s~~~VwvNG~~VG~~~--~~~~p-~efDIT~~Lk~~~~G~eN~L~V~V 231 (290)
+...+-+....+.+||+-+.... +++.. ..+|||++|+. |. |.+.++-
T Consensus 204 ~~~s~~~~~g~~~FNg~~l~~~~~~~~~~~~~~~DVt~~l~~---~~-n~~~~~~ 254 (271)
T PF11824_consen 204 VALSGGDGEGNLTFNGTNLWNGTPSGSYFGYDTWDVTDYLKS---GN-NSAFIQS 254 (271)
T ss_pred EEEeccCCCCEEEECCcccCCCCCCccceeeEeeeccccccC---CC-ceEEEEe
Confidence 44555554588999997775442 34433 36999999998 84 9988886
No 35
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=32.14 E-value=36 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=10.0
Q ss_pred eEEEEcCEEeee
Q 022918 189 FCAWINGVPVGY 200 (290)
Q Consensus 189 ~~VwvNG~~VG~ 200 (290)
.+|||||+.+-.
T Consensus 21 ~~V~VNG~~vv~ 32 (48)
T PF07908_consen 21 DYVFVNGQIVVE 32 (48)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEEE
Confidence 579999999854
No 36
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=31.71 E-value=62 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=17.0
Q ss_pred CeEEEEeCCccceeEEEEcCEEeee
Q 022918 176 RRILLHFEAVDSAFCAWINGVPVGY 200 (290)
Q Consensus 176 ~~v~L~fegv~s~~~VwvNG~~VG~ 200 (290)
..+.|.. +-..+++|+|||+.|-.
T Consensus 33 ~~v~~~~-~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 33 AEVELSP-GSTGAFEVTVNGELIFS 56 (76)
T ss_dssp SEEEEEE-ESTT-EEEEETTEEEEE
T ss_pred eEEEEEe-ccCCEEEEEEccEEEEE
Confidence 3455555 44788999999999854
No 37
>PF05775 AfaD: Enterobacteria AfaD invasin protein; InterPro: IPR008394 This family consists of several AfaD and related proteins from Escherichia coli and Salmonella bacteria. The afa gene clusters encode an afimbrial adhesive sheath produced by E. coli. The adhesive sheath is composed of two proteins, AfaD and AfaE, which are independently exposed at the bacterial cell surface. AfaE is required for bacterial adhesion to HeLa cells and AfaD for the uptake of adherent bacteria into these cells [].; GO: 0009289 pilus; PDB: 3UIZ_F 3UIY_A 2AXW_A 2IXQ_A 2FVN_A.
Probab=29.34 E-value=1.1e+02 Score=24.54 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred EEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEe
Q 022918 179 LLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 179 ~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
.|.-.+..+.+.||.|.+.++- .|-.+-|... . +..|+|.|++..
T Consensus 18 rI~~~~~htGF~Vw~na~~~~g-----~p~~Yil~G~--~---~~~h~LrVRlgg 62 (111)
T PF05775_consen 18 RIICREAHTGFHVWSNARQVGG-----RPGRYILQGK--R---NSQHELRVRLGG 62 (111)
T ss_dssp EEES-SSSSEEEEEESSEESTT-----STTEEEEEBC--S---SSS-EEEEEEET
T ss_pred EEEeCCCceEEEEEeechhcCC-----CccEEEEeCC--C---CCCceEEEEeCC
Confidence 4667788999999999999765 3455555542 2 224999999974
No 38
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=29.25 E-value=60 Score=25.36 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=17.0
Q ss_pred eEEEEeCCccceeEEEEcCEEeeecc
Q 022918 177 RILLHFEAVDSAFCAWINGVPVGYSQ 202 (290)
Q Consensus 177 ~v~L~fegv~s~~~VwvNG~~VG~~~ 202 (290)
.+.+.++ ....++||||+.++...
T Consensus 89 ~l~~~~~--~~~~~lyvnG~~~~~~~ 112 (157)
T PF13385_consen 89 HLALTYD--GSTVTLYVNGELVGSST 112 (157)
T ss_dssp EEEEEEE--TTEEEEEETTEEETTCT
T ss_pred EEEEEEE--CCeEEEEECCEEEEeEe
Confidence 4445555 34589999999998754
No 39
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=29.19 E-value=1.2e+02 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=24.1
Q ss_pred eeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEec
Q 022918 188 AFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 188 ~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
.--+-|||+.|+.+--+.. ..+.| .+ | +|+|+|++...
T Consensus 9 i~~l~vnG~~v~~~~~~~~-~~l~L----~~---G-~~Qiv~ry~~~ 46 (189)
T PF09829_consen 9 IELLAVNGQEVSGSLFSSK-DSLEL----PP---G-ENQIVFRYSKI 46 (189)
T ss_pred EEEEEEcCeeccCccccCC-ceEEe----CC---C-cEEEEEEEeEe
Confidence 3456899999965432111 11444 45 8 59999999864
No 40
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=37 Score=26.94 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=12.9
Q ss_pred cceeEEEEcCEEeeec
Q 022918 186 DSAFCAWINGVPVGYS 201 (290)
Q Consensus 186 ~s~~~VwvNG~~VG~~ 201 (290)
-+.-.+||||++||-+
T Consensus 70 PT~PQLyi~GEfvGG~ 85 (105)
T COG0278 70 PTFPQLYVNGEFVGGC 85 (105)
T ss_pred CCCceeeECCEEeccH
Confidence 3456789999999976
No 41
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=27.33 E-value=1.4e+02 Score=21.64 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=20.1
Q ss_pred CccceeEEEEcCEEeeec----cCCCCceeeccc
Q 022918 184 AVDSAFCAWINGVPVGYS----QDSRLPAEFEIS 213 (290)
Q Consensus 184 gv~s~~~VwvNG~~VG~~----~~~~~p~efDIT 213 (290)
..+..++||+++.+||.- ..+-+.|.|.++
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 345689999999999962 233455555543
No 42
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=26.42 E-value=96 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCccceeEEEEcCEEeee
Q 022918 174 QGRRILLHFEAVDSAFCAWINGVPVGY 200 (290)
Q Consensus 174 ~~~~v~L~fegv~s~~~VwvNG~~VG~ 200 (290)
.|+...|.|.--...+.|+|||+.+..
T Consensus 81 ~g~~F~i~I~~~~~~f~I~vng~~~~~ 107 (133)
T PF00337_consen 81 PGQPFEIRIRVEEDGFKIYVNGKHFCS 107 (133)
T ss_dssp TTSEEEEEEEEESSEEEEEETTEEEEE
T ss_pred CCceEEEEEEEecCeeEEEECCeEEEE
Confidence 477777777777899999999999865
No 43
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=25.36 E-value=1.1e+02 Score=26.14 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=24.7
Q ss_pred cceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecC
Q 022918 186 DSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWS 235 (290)
Q Consensus 186 ~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~ 235 (290)
.....|++||++|+.++.......|- +.. |+ .+.|+|.+|.
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~----v~f---~~--~f~v~i~~~P 78 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFR----VHF---NE--IFNVQITRWP 78 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeE----Eec---cC--EEEEEEecCC
Confidence 34567899999999876544422222 223 43 6666666654
No 44
>smart00776 NPCBM This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
Probab=25.14 E-value=1.8e+02 Score=24.14 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=28.5
Q ss_pred eeEEEEcCEEeeeccC---CC--CceeeccccccccCCCCCceEEEEEEEecCCC
Q 022918 188 AFCAWINGVPVGYSQD---SR--LPAEFEISDYCYPHGSDKKNVLAVQVFRWSDG 237 (290)
Q Consensus 188 ~~~VwvNG~~VG~~~~---~~--~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dg 237 (290)
.+.|+.+|+.+-.+.. .. .+.++||+ |. ++|.++|....+|
T Consensus 86 ~F~V~~Dg~~l~~s~~~~~~~~~~~~~vdv~--------G~-~~L~L~v~~~g~g 131 (145)
T smart00776 86 VFEVYADGTKLYNSGVLRGADPAKAVDVDVS--------GA-KELRLVVTDAGDG 131 (145)
T ss_pred EEEEEeCCEeEEEcccccCCCCCeEEEEEcC--------CC-eEEEEEEEeCCCC
Confidence 5789999999987743 22 23455554 74 8999999876544
No 45
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=24.36 E-value=3e+02 Score=29.10 Aligned_cols=67 Identities=21% Similarity=0.408 Sum_probs=47.1
Q ss_pred eEEEEEEEEcCCCCCC-CeEEEEeCCccceeEEEE-cCEEeee-ccCCCCceeeccccccccCCCCCceEEEEEEEe
Q 022918 160 TGCYRTYFHIPKEWQG-RRILLHFEAVDSAFCAWI-NGVPVGY-SQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFR 233 (290)
Q Consensus 160 ~gwYrr~F~lp~~~~~-~~v~L~fegv~s~~~Vwv-NG~~VG~-~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~ 233 (290)
+.|||-+++||++|.+ +++.+.-+- +...-||= +|..|-. +.|.++ +|-+++-++. .+.++-|+|..
T Consensus 103 T~WF~V~i~lPe~Wvk~eqv~fqW~c-dnEGlV~~kdg~PvqafsggErT--~yvLpd~~~~----~~~tfYiE~ac 172 (1078)
T KOG4342|consen 103 TCWFRVEITLPEAWVKNEQVHFQWEC-DNEGLVWRKDGEPVQAFSGGERT--SYVLPDRLGE----RSLTFYIEVAC 172 (1078)
T ss_pred eEEEEEEEECchhhcCceeEEEEEec-CCCeeEEecCCceeeeccCCccc--eeEcccccCC----cceEEEEEeec
Confidence 5799999999999965 788888776 45566777 9998854 444443 3456665543 24777777764
No 46
>PRK10824 glutaredoxin-4; Provisional
Probab=24.10 E-value=55 Score=26.34 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.5
Q ss_pred EEeCCccceeEEEEcCEEeeec
Q 022918 180 LHFEAVDSAFCAWINGVPVGYS 201 (290)
Q Consensus 180 L~fegv~s~~~VwvNG~~VG~~ 201 (290)
..+.|-.+.-.|||||++||-+
T Consensus 63 ~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 63 PKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred HHHhCCCCCCeEEECCEEEcCh
Confidence 3345667888999999999875
No 47
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=23.99 E-value=62 Score=25.09 Aligned_cols=20 Identities=40% Similarity=0.893 Sum_probs=17.5
Q ss_pred CCeEEEEeCCccceeEEEEc
Q 022918 175 GRRILLHFEAVDSAFCAWIN 194 (290)
Q Consensus 175 ~~~v~L~fegv~s~~~VwvN 194 (290)
|+++.|+|+|-+..+..|++
T Consensus 55 g~~l~v~~dg~~~~~D~W~~ 74 (96)
T smart00561 55 GYRLLLHFDGWDDKYDFWCD 74 (96)
T ss_pred CCEEEEEEccCCCcCCEEEE
Confidence 78999999999888777775
No 48
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=23.28 E-value=1.1e+02 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCccceeEEEEcCEEeee
Q 022918 174 QGRRILLHFEAVDSAFCAWINGVPVGY 200 (290)
Q Consensus 174 ~~~~v~L~fegv~s~~~VwvNG~~VG~ 200 (290)
.|+...|.|---...+.|+|||+++..
T Consensus 76 ~g~~F~l~i~~~~~~f~i~vng~~~~~ 102 (127)
T cd00070 76 PGQPFELTILVEEDKFQIFVNGQHFFS 102 (127)
T ss_pred CCCeEEEEEEEcCCEEEEEECCEeEEE
Confidence 477778888888889999999998865
No 49
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=22.77 E-value=3.7e+02 Score=20.84 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=32.8
Q ss_pred EEEEeCCccceeEEEEcCEEeeeccCCCCc--eeecccc-ccccCCCCCceEEEE-EEEec
Q 022918 178 ILLHFEAVDSAFCAWINGVPVGYSQDSRLP--AEFEISD-YCYPHGSDKKNVLAV-QVFRW 234 (290)
Q Consensus 178 v~L~fegv~s~~~VwvNG~~VG~~~~~~~p--~efDIT~-~Lk~~~~G~eN~L~V-~V~~~ 234 (290)
-.+.|-| +...-|+|||++|..-.|-+.| ..+|+.. =|.+ |+.-.+.+ .+.|.
T Consensus 20 e~F~F~G-DDDvWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~---g~~Y~~d~F~~ERh 76 (90)
T TIGR02148 20 QYFEFRG-DDDVWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKE---GKTYPFDIFYCERH 76 (90)
T ss_pred cEEEEEc-CCeEEEEECCEEEEEccCcCCCcccEEEhhhcCCcc---CcEeeEEEEEEeec
Confidence 3778888 5568899999999665444433 3556554 2445 65445555 33443
No 50
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=21.85 E-value=1.3e+02 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=14.4
Q ss_pred ceeEEEEcCEEeeeccCCC
Q 022918 187 SAFCAWINGVPVGYSQDSR 205 (290)
Q Consensus 187 s~~~VwvNG~~VG~~~~~~ 205 (290)
....|||||+.|....+..
T Consensus 139 ~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 139 NRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp TEEEEEETTEEEEEEETTS
T ss_pred CEEEEEECCEEEEEEEcCC
Confidence 3478999999998766533
No 51
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=21.26 E-value=1.7e+02 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCeEEEEeCCccceeEEEEcCEEeee
Q 022918 175 GRRILLHFEAVDSAFCAWINGVPVGY 200 (290)
Q Consensus 175 ~~~v~L~fegv~s~~~VwvNG~~VG~ 200 (290)
.+.+.|+++... +.+|.+||+.++.
T Consensus 37 ~~~~~i~iGna~-~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 37 KEPFRIRIGNAG-AVEVTVNGKPVDL 61 (77)
T ss_pred CCCEEEEEeCCC-cEEEEECCEECCC
Confidence 567889998864 7899999999987
No 52
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=21.14 E-value=3.3e+02 Score=25.15 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.1
Q ss_pred ceeEEEEcCEEeeec
Q 022918 187 SAFCAWINGVPVGYS 201 (290)
Q Consensus 187 s~~~VwvNG~~VG~~ 201 (290)
+...+||||+++|+-
T Consensus 195 SDIs~~iNg~kig~W 209 (308)
T COG4189 195 SDISFYINGVKIGIW 209 (308)
T ss_pred cceEEEECCEEEeee
Confidence 456789999999973
No 53
>PRK01904 hypothetical protein; Provisional
Probab=20.82 E-value=1.4e+02 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=24.4
Q ss_pred eeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEec
Q 022918 188 AFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 188 ~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
.-.+-|||+.+..+-.. ..-.+.++ . |++|+|+|++...
T Consensus 30 i~lL~vnG~kv~~s~~~-~~~~l~L~----d---gg~hQIv~ry~~~ 68 (219)
T PRK01904 30 IDFLAIDGQKASKSLLK-EAKSFNIN----D---TQVHQVVVRVSEI 68 (219)
T ss_pred eEEEEECCEECcccccc-CCcceEeC----C---CCceEEEEEEeec
Confidence 34568999998543221 12334444 3 5359999999875
No 54
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=74 Score=25.16 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.8
Q ss_pred EEeCCccceeEEEEcCEEeeecc
Q 022918 180 LHFEAVDSAFCAWINGVPVGYSQ 202 (290)
Q Consensus 180 L~fegv~s~~~VwvNG~~VG~~~ 202 (290)
..+.|..+.-.|||||++||...
T Consensus 60 ~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 60 KKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHhcCCCCCCEEEECCEEEcCHH
Confidence 34556668889999999998754
No 55
>PRK04517 hypothetical protein; Provisional
Probab=20.45 E-value=1.5e+02 Score=26.49 Aligned_cols=39 Identities=13% Similarity=-0.025 Sum_probs=24.4
Q ss_pred eeEEEEcCEEeeeccCCCC-ceeeccccccccCCCCCceEEEEEEEec
Q 022918 188 AFCAWINGVPVGYSQDSRL-PAEFEISDYCYPHGSDKKNVLAVQVFRW 234 (290)
Q Consensus 188 ~~~VwvNG~~VG~~~~~~~-p~efDIT~~Lk~~~~G~eN~L~V~V~~~ 234 (290)
.--+-|||+.+..+.+-+. ...+. |.. |. |+|+|++...
T Consensus 31 i~lL~vnG~k~~~s~~l~~~~~~l~----L~~---G~-nQIvfry~~~ 70 (216)
T PRK04517 31 VDLLVANGSKPKLSGGFFASTKTLE----LPD---GE-NQIVFRYSPY 70 (216)
T ss_pred eEEEEECCEecccccccccCCceeE----eCC---Cc-eEEEEEEeEe
Confidence 3457899999854433222 12233 345 85 9999999864
Done!