Query 022919
Match_columns 290
No_of_seqs 136 out of 169
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 1.9E-93 4.1E-98 672.5 20.2 265 26-290 5-271 (307)
2 PLN02941 inositol-tetrakisphos 100.0 1.1E-72 2.4E-77 536.4 25.8 270 21-290 14-286 (328)
3 TIGR00768 rimK_fam alpha-L-glu 99.4 1.4E-11 3E-16 111.8 17.1 208 46-290 14-240 (277)
4 TIGR02144 LysX_arch Lysine bio 99.4 1.4E-11 3E-16 112.8 16.9 206 47-290 14-238 (280)
5 PRK10446 ribosomal protein S6 99.1 2.7E-09 5.7E-14 99.9 17.7 207 48-290 18-250 (300)
6 PF08443 RimK: RimK-like ATP-g 99.1 9.2E-10 2E-14 96.8 10.1 144 114-290 3-154 (190)
7 COG0189 RimK Glutathione synth 98.9 2E-08 4.4E-13 95.9 14.5 187 73-290 78-274 (318)
8 PRK01372 ddl D-alanine--D-alan 98.8 1.8E-07 3.9E-12 86.9 15.4 213 47-290 27-254 (304)
9 TIGR01205 D_ala_D_alaTIGR D-al 98.8 1.8E-07 3.9E-12 87.2 14.2 215 48-290 23-269 (315)
10 TIGR01380 glut_syn glutathione 98.8 6.1E-07 1.3E-11 85.0 17.8 176 73-290 78-274 (312)
11 PRK12458 glutathione synthetas 98.7 3.2E-07 7E-12 88.1 14.1 180 73-290 79-287 (338)
12 PRK02471 bifunctional glutamat 98.7 4.3E-07 9.3E-12 95.7 15.9 152 47-230 436-600 (752)
13 PRK05246 glutathione synthetas 98.7 1.4E-06 3.1E-11 82.5 18.0 133 73-224 79-228 (316)
14 TIGR03103 trio_acet_GNAT GNAT- 98.6 1.6E-06 3.5E-11 88.4 15.6 153 43-227 240-402 (547)
15 PRK14016 cyanophycin synthetas 98.5 1.1E-06 2.4E-11 92.3 11.9 149 47-227 164-320 (727)
16 TIGR02068 cya_phycin_syn cyano 98.4 3.9E-06 8.5E-11 89.8 12.9 110 104-228 203-320 (864)
17 PRK12767 carbamoyl phosphate s 98.3 7.8E-06 1.7E-10 76.5 12.2 151 100-290 97-255 (326)
18 PRK14571 D-alanyl-alanine synt 98.3 1.1E-05 2.5E-10 75.2 13.0 146 48-214 24-182 (299)
19 PRK14569 D-alanyl-alanine synt 98.3 4.2E-05 9E-10 71.8 16.4 208 48-290 27-249 (296)
20 PRK06849 hypothetical protein; 98.3 4E-05 8.7E-10 74.1 16.3 152 101-290 103-260 (389)
21 PRK06019 phosphoribosylaminoim 98.2 1.6E-05 3.4E-10 77.0 12.4 206 48-289 17-250 (372)
22 TIGR01161 purK phosphoribosyla 98.2 4.6E-05 1E-09 72.8 14.8 151 47-212 13-188 (352)
23 PF13535 ATP-grasp_4: ATP-gras 98.2 4E-06 8.6E-11 71.1 6.5 148 112-290 2-163 (184)
24 PRK01966 ddl D-alanyl-alanine 98.1 0.00015 3.1E-09 69.2 15.2 128 73-214 81-219 (333)
25 PRK07206 hypothetical protein; 98.0 9.7E-05 2.1E-09 71.7 13.7 106 99-217 93-215 (416)
26 TIGR01142 purT phosphoribosylg 98.0 0.00013 2.9E-09 69.8 13.7 99 100-212 86-196 (380)
27 KOG1057 Arp2/3 complex-interac 97.9 0.00015 3.4E-09 75.8 12.8 233 26-290 38-308 (1018)
28 TIGR01435 glu_cys_lig_rel glut 97.9 7.9E-05 1.7E-09 78.6 10.9 89 133-229 487-586 (737)
29 PRK14572 D-alanyl-alanine synt 97.8 9.5E-05 2.1E-09 70.9 9.4 127 73-214 88-228 (347)
30 PRK14568 vanB D-alanine--D-lac 97.8 0.0001 2.2E-09 70.5 9.3 125 73-215 90-223 (343)
31 PRK05294 carB carbamoyl phosph 97.8 0.00083 1.8E-08 73.6 16.7 101 104-217 659-769 (1066)
32 PRK09288 purT phosphoribosylgl 97.6 0.00048 1E-08 66.3 11.2 148 48-212 27-209 (395)
33 PRK12815 carB carbamoyl phosph 97.6 0.00025 5.5E-09 77.7 9.3 101 99-214 654-762 (1068)
34 TIGR01369 CPSaseII_lrg carbamo 97.6 0.0014 2.9E-08 71.9 14.7 107 99-218 653-770 (1050)
35 PRK14570 D-alanyl-alanine synt 97.5 0.00082 1.8E-08 65.4 11.1 127 73-215 87-229 (364)
36 PLN02948 phosphoribosylaminoim 97.5 0.0017 3.6E-08 67.0 13.3 158 26-202 20-204 (577)
37 PRK08462 biotin carboxylase; V 97.4 0.00071 1.5E-08 66.7 9.0 142 41-214 60-218 (445)
38 PRK05294 carB carbamoyl phosph 97.4 0.0021 4.4E-08 70.6 13.1 162 99-289 112-286 (1066)
39 PF07478 Dala_Dala_lig_C: D-al 97.3 0.00012 2.6E-09 65.7 2.7 134 133-284 6-152 (203)
40 PRK02186 argininosuccinate lya 97.3 0.0014 3.1E-08 70.5 11.1 94 104-212 97-198 (887)
41 PRK05586 biotin carboxylase; V 97.3 0.00043 9.4E-09 68.5 6.6 111 90-214 91-216 (447)
42 TIGR02291 rimK_rel_E_lig alpha 97.1 0.015 3.3E-07 55.9 14.6 169 111-290 34-254 (317)
43 PRK13790 phosphoribosylamine-- 97.1 0.0061 1.3E-07 59.4 11.4 138 46-215 17-164 (379)
44 PLN02735 carbamoyl-phosphate s 97.0 0.0094 2E-07 65.8 14.0 128 73-214 649-797 (1102)
45 PLN02735 carbamoyl-phosphate s 97.0 0.0077 1.7E-07 66.5 13.3 153 48-214 49-240 (1102)
46 PRK00885 phosphoribosylamine-- 97.0 0.0056 1.2E-07 59.9 10.6 109 90-214 78-200 (420)
47 PF02655 ATP-grasp_3: ATP-gras 96.9 0.0024 5.3E-08 54.8 6.7 135 113-290 2-143 (161)
48 TIGR00877 purD phosphoribosyla 96.9 0.0085 1.8E-07 58.5 11.2 107 90-212 80-200 (423)
49 TIGR01369 CPSaseII_lrg carbamo 96.9 0.012 2.7E-07 64.5 13.0 141 48-202 32-211 (1050)
50 PRK06111 acetyl-CoA carboxylas 96.8 0.0039 8.4E-08 61.3 7.4 102 99-213 99-215 (450)
51 PRK08591 acetyl-CoA carboxylas 96.7 0.0041 8.8E-08 61.3 7.1 99 102-214 103-216 (451)
52 PRK06524 biotin carboxylase-li 96.7 0.0055 1.2E-07 62.2 7.9 114 90-214 118-239 (493)
53 PRK12833 acetyl-CoA carboxylas 96.6 0.006 1.3E-07 61.0 7.4 100 102-215 106-220 (467)
54 PRK12815 carB carbamoyl phosph 96.6 0.022 4.7E-07 62.8 12.2 102 99-214 112-223 (1068)
55 PRK14573 bifunctional D-alanyl 96.5 0.026 5.7E-07 60.1 11.8 129 73-215 526-669 (809)
56 PRK07178 pyruvate carboxylase 96.4 0.015 3.2E-07 58.3 9.1 142 41-214 57-215 (472)
57 PF02955 GSH-S_ATP: Prokaryoti 96.3 0.005 1.1E-07 54.4 4.1 128 136-290 12-151 (173)
58 TIGR00514 accC acetyl-CoA carb 96.2 0.012 2.7E-07 58.1 7.3 99 102-214 103-216 (449)
59 PRK08654 pyruvate carboxylase 96.0 0.021 4.6E-07 57.9 7.6 103 99-215 99-217 (499)
60 TIGR01235 pyruv_carbox pyruvat 95.9 0.019 4.1E-07 63.7 7.4 104 99-215 99-217 (1143)
61 PRK13789 phosphoribosylamine-- 95.9 0.067 1.5E-06 53.2 10.6 137 44-214 56-206 (426)
62 PLN02257 phosphoribosylamine-- 95.8 0.08 1.7E-06 52.8 10.9 125 46-202 52-190 (434)
63 PRK06395 phosphoribosylamine-- 95.7 0.091 2E-06 52.4 10.8 141 46-218 55-208 (435)
64 PRK08463 acetyl-CoA carboxylas 95.7 0.036 7.7E-07 55.7 8.0 103 99-214 98-216 (478)
65 PRK12999 pyruvate carboxylase; 95.5 0.015 3.1E-07 64.6 4.7 102 99-214 103-220 (1146)
66 PF15632 ATPgrasp_Ter: ATP-gra 94.7 0.42 9.1E-06 46.3 11.5 116 75-203 68-209 (329)
67 COG1181 DdlA D-alanine-D-alani 94.4 0.81 1.7E-05 44.1 12.6 222 48-290 26-269 (317)
68 COG0026 PurK Phosphoribosylami 94.3 0.41 9E-06 47.1 10.6 140 51-205 19-184 (375)
69 TIGR02712 urea_carbox urea car 93.8 0.16 3.5E-06 56.8 7.4 99 102-214 102-214 (1201)
70 PRK05784 phosphoribosylamine-- 93.7 2.1 4.6E-05 43.5 14.7 133 47-214 60-217 (486)
71 COG0458 CarB Carbamoylphosphat 92.9 0.7 1.5E-05 46.0 9.6 117 100-231 102-228 (400)
72 PRK13278 purP 5-formaminoimida 91.2 0.5 1.1E-05 46.2 6.3 80 102-203 111-202 (358)
73 PRK13277 5-formaminoimidazole- 89.5 0.6 1.3E-05 46.0 5.2 65 133-212 138-218 (366)
74 COG0439 AccC Biotin carboxylas 88.2 1.1 2.5E-05 45.2 6.3 121 88-222 89-228 (449)
75 COG3919 Predicted ATP-grasp en 86.9 0.53 1.1E-05 45.6 2.9 86 108-205 108-204 (415)
76 PF02222 ATP-grasp: ATP-grasp 85.6 0.32 6.9E-06 42.8 0.7 68 133-205 5-77 (172)
77 COG2232 Predicted ATP-dependen 85.2 22 0.00047 35.1 12.9 155 25-214 11-196 (389)
78 COG1821 Predicted ATP-utilizin 84.6 11 0.00024 35.9 10.3 45 162-218 141-187 (307)
79 PF02786 CPSase_L_D2: Carbamoy 74.4 7.2 0.00016 35.2 5.6 54 157-214 36-102 (211)
80 PF03133 TTL: Tubulin-tyrosine 71.3 3.8 8.3E-05 38.0 3.1 51 160-213 66-126 (292)
81 COG0027 PurT Formate-dependent 70.4 9.6 0.00021 37.4 5.6 138 51-203 30-201 (394)
82 TIGR01016 sucCoAbeta succinyl- 67.6 2.8 6.1E-05 40.9 1.4 79 133-215 16-116 (386)
83 PRK00696 sucC succinyl-CoA syn 60.7 7.3 0.00016 38.1 2.9 69 133-204 16-106 (388)
84 PF14397 ATPgrasp_ST: Sugar-tr 54.0 1.9E+02 0.0042 27.1 13.2 29 261-289 213-242 (285)
85 PF14305 ATPgrasp_TupA: TupA-l 52.3 1.9E+02 0.0041 26.5 11.9 65 155-224 52-146 (239)
86 PF02750 Synapsin_C: Synapsin, 48.1 52 0.0011 30.1 5.9 106 157-290 48-162 (203)
87 KOG2356 Transcriptional activa 40.2 26 0.00056 34.1 2.9 41 82-122 169-211 (366)
88 PF02065 Melibiase: Melibiase; 38.9 42 0.0009 33.4 4.3 68 33-102 160-230 (394)
89 PF14398 ATPgrasp_YheCD: YheC/ 38.2 2.7E+02 0.0059 25.7 9.4 174 94-289 3-216 (262)
90 cd01125 repA Hexameric Replica 33.1 82 0.0018 28.2 4.9 78 27-109 40-123 (239)
91 PF13407 Peripla_BP_4: Peripla 32.0 80 0.0017 27.6 4.6 63 31-108 1-66 (257)
92 PF13481 AAA_25: AAA domain; P 31.8 44 0.00096 28.4 2.9 28 85-112 127-156 (193)
93 PF14972 Mito_morph_reg: Mitoc 30.9 72 0.0016 28.2 3.9 33 75-107 4-41 (165)
94 PF13380 CoA_binding_2: CoA bi 30.2 1.7E+02 0.0037 23.6 5.9 74 29-106 4-88 (116)
95 KOG2158 Tubulin-tyrosine ligas 29.3 23 0.00049 36.4 0.7 50 160-213 227-283 (565)
96 cd05565 PTS_IIB_lactose PTS_II 29.0 1.7E+02 0.0038 23.4 5.7 80 42-121 14-96 (99)
97 PRK06067 flagellar accessory p 26.9 1.4E+02 0.003 26.6 5.3 38 86-123 108-146 (234)
98 KOG0555 Asparaginyl-tRNA synth 26.1 44 0.00096 33.8 2.0 40 181-220 256-295 (545)
99 cd06353 PBP1_BmpA_Med_like Per 24.9 2.1E+02 0.0046 26.1 6.2 61 31-106 2-66 (258)
100 PF12058 DUF3539: Protein of u 23.7 79 0.0017 25.2 2.7 19 198-216 4-24 (88)
101 PF06228 ChuX_HutX: Haem utili 23.4 68 0.0015 27.5 2.5 18 196-213 105-123 (141)
102 cd02065 B12-binding_like B12 b 23.1 2.1E+02 0.0045 22.3 5.2 20 48-67 19-38 (125)
103 cd01122 GP4d_helicase GP4d_hel 22.8 1.4E+02 0.0031 26.9 4.7 27 86-112 128-155 (271)
104 TIGR02237 recomb_radB DNA repa 21.5 1.6E+02 0.0034 25.5 4.5 25 87-111 86-111 (209)
105 PF04046 PSP: PSP; InterPro: 21.4 38 0.00083 24.0 0.4 13 271-283 4-16 (48)
106 COG2874 FlaH Predicted ATPases 20.9 84 0.0018 29.3 2.7 90 26-124 54-150 (235)
107 PF01135 PCMT: Protein-L-isoas 20.5 85 0.0019 28.3 2.6 27 55-81 123-149 (209)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=1.9e-93 Score=672.47 Aligned_cols=265 Identities=47% Similarity=0.796 Sum_probs=224.9
Q ss_pred CccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCC
Q 022919 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP 105 (290)
+++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++||+|+++||+++||||
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp 84 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP 84 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCC
Q 022919 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (290)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~ 185 (290)
+++|++|+||.+|++.|++++...+.+.+++|+|++++++.+++.+.++++||+||+||||++||||++||+|+||||++
T Consensus 85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~ 164 (307)
T PF05770_consen 85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE 164 (307)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG
T ss_pred HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH
Confidence 99999999999999999998877777899999999998778889999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCC--CCCCCC
Q 022919 186 SLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--PGIAGE 263 (290)
Q Consensus 186 gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld--~~~~e~ 263 (290)
||++|++|||+||||||||+|||||||||+++|++||||||++.++.....+.|+|+++|++++.++.+.+| ++..++
T Consensus 165 gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~ 244 (307)
T PF05770_consen 165 GLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEM 244 (307)
T ss_dssp GGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS
T ss_pred HHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccC
Confidence 999999999999999999999999999999999999999999998776677899999999999998887777 566789
Q ss_pred CCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 264 NSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 264 p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
|+.++++++|++||++|||+|||||+|
T Consensus 245 p~~~~v~~la~~LR~~lgL~LFgfDvI 271 (307)
T PF05770_consen 245 PPDELVEKLAKELRRALGLTLFGFDVI 271 (307)
T ss_dssp --HHHHHHHHHHHHHHHT-SEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCcceeeeEEE
Confidence 999999999999999999999999997
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=1.1e-72 Score=536.43 Aligned_cols=270 Identities=62% Similarity=0.945 Sum_probs=251.1
Q ss_pred cCCCCCccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCe
Q 022919 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (290)
Q Consensus 21 ~~~~~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v 100 (290)
+.++.+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++||||||||||+|+..|++.+++|..+||++
T Consensus 14 ~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred cccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 44467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE
Q 022919 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (290)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal 180 (290)
+||||+++|+.++||..|++.|.++..+++.+.|++|+++++.+...++...++.++++||+||||++||||+.+|.|++
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~l 173 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSL 173 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEE
Confidence 99999999999999999999999988877788899999999975544455567789999999999999999999999999
Q ss_pred EecCCCCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCC---CC
Q 022919 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD---LD 257 (290)
Q Consensus 181 vf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~---ld 257 (290)
|++++||..+++||++||||||+|++||||||||++.++.|+|+||+..++.....|.++|+++||.++.++.+. ++
T Consensus 174 v~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~ 253 (328)
T PLN02941 174 AYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLD 253 (328)
T ss_pred ecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999876666678999999999998877665 55
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 258 PGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 258 ~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
+...++|+.+.+++||.++|++||++|||||+|
T Consensus 254 ~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI 286 (328)
T PLN02941 254 PEVAELPPRPFLEDLARELRRRLGLRLFNFDMI 286 (328)
T ss_pred cccccCCChHHHHHHHHHHHHHhCCceEEEEEE
Confidence 556688999999999999999999999999997
No 3
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.40 E-value=1.4e-11 Score=111.79 Aligned_cols=208 Identities=15% Similarity=0.223 Sum_probs=138.9
Q ss_pred hHHHHHhhccceEEEEecCCCC---CCC----CCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHH
Q 022919 46 PKLEILARNKGISFVAIDQNRP---LSD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 118 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~p---l~~----Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~ 118 (290)
+.+.+.++++|+++..+|.+.. +.. ...+|+|+=...+......+.+..+.. .+.++.++++++...|+..+
T Consensus 14 ~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~ 92 (277)
T TIGR00768 14 KMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESL-GVPVINSSDAILNAGDKFLT 92 (277)
T ss_pred HHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHC-CCeeeCCHHHHHHHhhHHHH
Confidence 4588889999999988887542 222 336899987773322222344444544 57788899999999999999
Q ss_pred HHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CC
Q 022919 119 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LE 191 (290)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~ 191 (290)
++.+++. .+.+|++..+. +.+++...+ ..+.||+|+||..++|+ ..+.++.+.+.+.. ..
T Consensus 93 ~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~g~~g---~gv~~i~~~~~l~~~~~~~~~~~ 159 (277)
T TIGR00768 93 SQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVFGSWG---RLVSLARDKQAAETLLEHFEQLN 159 (277)
T ss_pred HHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECcCCCC---CceEEEcCHHHHHHHHHHHHHhc
Confidence 9999854 35678888774 222222222 24679999999876654 56778888876642 22
Q ss_pred ---CCeeEEeeeecCe-eEEEEEEEcceEEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCH
Q 022919 192 ---PPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSL 266 (290)
Q Consensus 192 ---~P~V~QeFinH~g-vl~KvYVvGd~v~v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~ 266 (290)
.++++||||++.+ .-+.|+|+|+++..+.++..+ ++... .+..+.. .. ... .
T Consensus 160 ~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~~~n-------------~~~g~~~---~~-----~~l--~ 216 (277)
T TIGR00768 160 GPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHWRTN-------------LARGGKA---EP-----CPL--T 216 (277)
T ss_pred ccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCchhhh-------------hhcCCee---ee-----cCC--C
Confidence 3899999999874 899999999998765443311 11111 0000000 00 011 2
Q ss_pred HHHHHHHHHHHHHhCceeeeeecC
Q 022919 267 PALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 267 ~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
+.+.++|..+-++||+..+|+|+|
T Consensus 217 ~~~~~~a~~~~~~l~~~~~~vD~~ 240 (277)
T TIGR00768 217 EEIEELAIKAAKALGLDVVGIDLL 240 (277)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEE
Confidence 358899999999999999999985
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.40 E-value=1.4e-11 Score=112.83 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=135.1
Q ss_pred HHHHHhhccceEEEEecCCCC---CC---CC-CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRP---LS---DQ-GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~p---l~---~Q-gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l 119 (290)
.+.+.++++|++...+|.+.. +. .+ .++|+++=.-....-...+....+.+ .+.++.|+++++...|+..++
T Consensus 14 ~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~-g~~~~n~~~~~~~~~dK~~~~ 92 (280)
T TIGR02144 14 MLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEAL-GVPVINSSHVIEACGDKIFTY 92 (280)
T ss_pred HHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHC-CCcEECcHHHHHHHhhHHHHH
Confidence 377788999999998876642 11 12 36898776522211111233333443 577899999999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC----------
Q 022919 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------- 189 (290)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------- 189 (290)
+.+++. .|.+|+...+. +..++... ...+.||+|+||...+| +..+.++.+.+.+..
T Consensus 93 ~~l~~~-------gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~g~~---g~gv~~v~~~~~l~~~~~~~~~~~~ 159 (280)
T TIGR02144 93 LKLAKA-------GVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVIGSW---GRLVALIRDKDELESLLEHKEVLGG 159 (280)
T ss_pred HHHHHC-------CcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECcCCC---cCCEEEECCHHHHHHHHHHHHhhcC
Confidence 988754 36678887764 22222222 23567999999977544 567888888886542
Q ss_pred -CCCCeeEEeeeecCeeEEEEEEEcceEE-EEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHH
Q 022919 190 -LEPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLP 267 (290)
Q Consensus 190 -l~~P~V~QeFinH~gvl~KvYVvGd~v~-v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~ 267 (290)
...|+++||||.+.|.-+.+||+|+++. .+.|.+ .++.... + .... .. ..+..+
T Consensus 160 ~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~~-------------~-~g~~--~~-------~~~~~~ 215 (280)
T TIGR02144 160 SQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTNT-------------A-RGGK--AE-------PCPLDE 215 (280)
T ss_pred CcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhhh-------------h-cCCc--ee-------ccCCCH
Confidence 2357999999998788899999999865 455554 2222110 0 0000 00 011123
Q ss_pred HHHHHHHHHHHHhCceeeeeecC
Q 022919 268 ALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 268 ~v~~iA~~LR~~LGL~LfGfDli 290 (290)
.+.++|..+-+++|+.++|+|++
T Consensus 216 ~~~~~a~~~~~~lg~~~~~vD~~ 238 (280)
T TIGR02144 216 EVEELAVKAAEAVGGGVVAIDIF 238 (280)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEE
Confidence 57899999999999999999985
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.14 E-value=2.7e-09 Score=99.91 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=134.0
Q ss_pred HHHHhhccceEEEEecCCCC---CC-----------CCCCceEEEecccch--HHHHHHHHHHHhCCCeEEeCChhHHhh
Q 022919 48 LEILARNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPPDAIKH 111 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~p---l~-----------~Qgp~DvILHKltd~--~~~~~l~~y~~~hP~v~ViDP~~~i~~ 111 (290)
+..-++++|++.+.+|.+.. +. ...++|+++=.+... ......++..+.. .+.++.++.+++.
T Consensus 18 ~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~-g~~v~n~~~a~~~ 96 (300)
T PRK10446 18 LREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML-GSYPLNESVAIAR 96 (300)
T ss_pred HHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC-CCceecCHHHHHh
Confidence 66677889999999997752 21 123789998755432 2222233444443 3677888889999
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC---
Q 022919 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS--- 188 (290)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~--- 188 (290)
..|+..+.+.+.+. .|.+|+...+. +.+++.+.+. .-..||+|+||....| |..+.++.+.+.+.
T Consensus 97 ~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~-~~~~~P~VvKP~~g~~---g~GV~~v~~~~~~~~~~ 164 (300)
T PRK10446 97 ARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLID-MVGGAPLVVKLVEGTQ---GIGVVLAETRQAAESVI 164 (300)
T ss_pred hhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHH-HhCCCCEEEEECCCCC---cccEEEEcCHHHHHHHH
Confidence 99999999998854 46678887763 2222222222 2236999999966433 56677777766543
Q ss_pred ----CCCCCeeEEeeeecC-eeEEEEEEEcceEE-EEEecCC-CCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCC
Q 022919 189 ----ELEPPMLLQEFVNHG-GILFKIYIIGETIK-VVRRFSL-PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 261 (290)
Q Consensus 189 ----~l~~P~V~QeFinH~-gvl~KvYVvGd~v~-v~~R~Sl-pn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~ 261 (290)
....++++||||++. |.-+-|+|+|+++. ++.|-+- .++... . +.- ..... .
T Consensus 165 ~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~~n-~------------~~g-~~~~~-------~ 223 (300)
T PRK10446 165 DAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSN-L------------HRG-GAASV-------A 223 (300)
T ss_pred HHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchhhe-e------------ccC-Ceecc-------C
Confidence 345789999999874 89999999998854 4555331 122111 0 000 00000 0
Q ss_pred CCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 262 GENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 262 e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
++ .+.++++|...-++||+.+.|+|+|
T Consensus 224 ~l--~~~~~~~a~~a~~alg~~~~gvD~~ 250 (300)
T PRK10446 224 SI--TPQEREIAIKAARTMALDVAGVDIL 250 (300)
T ss_pred CC--CHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 12 3448899999999999999999985
No 6
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.06 E-value=9.2e-10 Score=96.77 Aligned_cols=144 Identities=24% Similarity=0.374 Sum_probs=74.1
Q ss_pred cHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-----
Q 022919 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS----- 188 (290)
Q Consensus 114 dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~----- 188 (290)
|+..+++.|.+. .+.+|+..+.. +.+++.+.+.+.+ .+|+|.||+..++ ...+.++-+.+.+.
T Consensus 3 dK~~~~~~l~~~-------gipvP~t~~~~-~~~~~~~~~~~~~-~~p~ViKp~~g~~---G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKA-------GIPVPETRVTN-SPEEAKEFIEELG-GFPVVIKPLRGSS---GRGVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHT-------T-----EEEES-SHHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHC-------CcCCCCEEEEC-CHHHHHHHHHHhc-CCCEEEeeCCCCC---CCEEEEecCHHHHHHHHHH
Confidence 566667777643 47789988885 2333444455555 8999999976443 47788898888664
Q ss_pred --CCCCCeeEEeeeecCe-eEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC
Q 022919 189 --ELEPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS 265 (290)
Q Consensus 189 --~l~~P~V~QeFinH~g-vl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~ 265 (290)
....|+++|+||++.+ .-+.|||||+++....+.+-++ ++... +.+. ....+ ..+.
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~--------n~~~------g~~~~--~~~l-- 129 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRT--------NLSR------GGKVE--PYDL-- 129 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------E--E-----
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchh--------hhcc------CceEE--EecC--
Confidence 3468999999999985 9999999999998766655443 11100 0000 00000 0112
Q ss_pred HHHHHHHHHHHHHHhCceeeeeecC
Q 022919 266 LPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 266 ~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
.+.+.++|..+.++|||.+.|+|++
T Consensus 130 ~~e~~~~a~~~~~~lgl~~~giDi~ 154 (190)
T PF08443_consen 130 PEEIKELALKAARALGLDFAGIDIL 154 (190)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 2458899999999999999999974
No 7
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2e-08 Score=95.94 Aligned_cols=187 Identities=18% Similarity=0.218 Sum_probs=124.4
Q ss_pred CceEEEecccchHHH-HHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchh
Q 022919 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD 151 (290)
Q Consensus 73 p~DvILHKltd~~~~-~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~ 151 (290)
.+|+++=.-+...-. -.+-+..+. =.+.||+|+++++...|..-.++.+.. ..+.+|.-+++... .+..
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~-~G~~viN~p~~i~~~~nK~~~~~~l~~-------~~ipvP~T~i~~~~-~~~~- 147 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAER-KGVPVINDPQSIRRCRNKLYTTQLLAK-------AGIPVPPTLITRDP-DEAA- 147 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHH-cCCeEECCHHHHHhhhhHHHHHHHHHh-------cCCCCCCEEEEcCH-HHHH-
Confidence 688888776554222 111122222 379999999999999999988888873 24678888888532 2233
Q ss_pred HHHhcCCccceEeeeccccCCCCceeEEEEecCC-CCCCC--------CCCeeEEeeeecCeeEEEEEEEcceEEEEEec
Q 022919 152 QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRF 222 (290)
Q Consensus 152 ~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~-gL~~l--------~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~ 222 (290)
...+..+.||+|.||+-++|. .....+-+.+ .|.++ .-++++||||+=...=+|.|++||...+..+
T Consensus 148 ~~~~~~~g~pvVlKp~~Gs~G---~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y- 223 (318)
T COG0189 148 EFVAEHLGFPVVLKPLDGSGG---RGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIY- 223 (318)
T ss_pred HHHHHhcCCCEEEeeCCCCCc---cceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEe-
Confidence 333456889999999886665 5677788888 55422 1369999999999999999999999998876
Q ss_pred CCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 223 SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 223 Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
.+.=++... -| -+|.+. .+..+ ..+. .+.+++||......||+.+.|+|+|
T Consensus 224 ~~~R~~~~~------~~----R~N~a~---Gg~~e--~~~l--~~e~~elA~kaa~~lGl~~~GVDii 274 (318)
T COG0189 224 ALARIPASG------DF----RSNLAR---GGRAE--PCEL--TEEEEELAVKAAPALGLGLVGVDII 274 (318)
T ss_pred eeccccCCC------Cc----eeeccc---ccccc--ccCC--CHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 221111110 00 011110 01100 0122 3468999999999999999999986
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.79 E-value=1.8e-07 Score=86.95 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=135.6
Q ss_pred HHHHHhhccceEEEEecCCCCCCC---CCCceEEEecccch-HHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGM-EWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~---Qgp~DvILHKltd~-~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~ 121 (290)
.+....++.|++.+.|+.+..+.+ ...+|+|+=-+.+. .-...++.+.+.+ .+.++-+ ..++....|+..+.+.
T Consensus 27 ~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~~ 105 (304)
T PRK01372 27 AVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKLV 105 (304)
T ss_pred HHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHH
Confidence 477777889999999988876654 34689998654221 0012355566665 7887766 7899999999999888
Q ss_pred HhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCe
Q 022919 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 194 (290)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~ 194 (290)
+.+. .|.+|++..+.+.. +.... ...+.||+|+||....|+ ..+.++.+.+.+.. ...++
T Consensus 106 l~~~-------gIp~p~~~~~~~~~-~~~~~--~~~~~~P~ivKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (304)
T PRK01372 106 WQAA-------GLPTPPWIVLTREE-DLLAA--IDKLGLPLVVKPAREGSS---VGVSKVKEEDELQAALELAFKYDDEV 172 (304)
T ss_pred HHHC-------CCCCCCEEEEeCcc-hHHHH--HhhcCCCEEEeeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCcE
Confidence 8754 47789998885322 11122 246789999999886654 56788999887642 35689
Q ss_pred eEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHH
Q 022919 195 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWK 272 (290)
Q Consensus 195 V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~i 272 (290)
++||||+ |.=|-|.|+|+++.-..+...++ +.+.+.. +.......... + ..+++ ...++++
T Consensus 173 lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~--~~~~g~~~~~~-p--~~~~~~~~~~l~~~ 235 (304)
T PRK01372 173 LVEKYIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEA--KYLAGGTQYIC-P--AGLPAEIEAELQEL 235 (304)
T ss_pred EEEcccC--CEEEEEEEECCCccceEEEEecC----------CEEeeec--cccCCCeEEEe-C--CCCCHHHHHHHHHH
Confidence 9999998 78889999999654221111110 1112211 00000000000 0 01111 3468889
Q ss_pred HHHHHHHhCce-eeeeecC
Q 022919 273 GLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 273 A~~LR~~LGL~-LfGfDli 290 (290)
|..+-++||+. .+++|++
T Consensus 236 a~~~~~~lg~~g~~~iD~~ 254 (304)
T PRK01372 236 ALKAYRALGCRGWGRVDFM 254 (304)
T ss_pred HHHHHHHhCCcceEEEEEE
Confidence 99999999996 6778874
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.76 E-value=1.8e-07 Score=87.21 Aligned_cols=215 Identities=16% Similarity=0.178 Sum_probs=132.6
Q ss_pred HHHHhhccceEEEEecCCCC-------C-------CCC-CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCC-hhHHh
Q 022919 48 LEILARNKGISFVAIDQNRP-------L-------SDQ-GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIK 110 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~p-------l-------~~Q-gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP-~~~i~ 110 (290)
+....++.|++++.+|.+.. + ..+ ..+|+|+-=+.+.. -...++...+.+ ++.++-+ +.++.
T Consensus 23 i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gip~~g~~~~~~~ 101 (315)
T TIGR01205 23 VLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM-GIPYTGSGVLASA 101 (315)
T ss_pred HHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc-CCCccCCCHHHHH
Confidence 56667788999999888761 1 111 47899998543220 011345555554 6777765 88999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchh---HHHhcCCccceEeeeccccCCCCceeEEEEecCCCC
Q 022919 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD---QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (290)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~---~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL 187 (290)
...|+..+.+.+++. .|.+|++..+..+..+..+ ......+.||+|+||....| |..+.++.+.+.|
T Consensus 102 ~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el 171 (315)
T TIGR01205 102 LSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGS---SVGVSKVKSEEEL 171 (315)
T ss_pred HHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC---ccCEEEECCHHHH
Confidence 999999999998853 4778998887522211111 11124689999999977554 4678899998877
Q ss_pred CC-------CCCCeeEEeeeecCeeEEEEEEEc-ceE-EEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCc--CCC
Q 022919 188 SE-------LEPPMLLQEFVNHGGILFKIYIIG-ETI-KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD--ADL 256 (290)
Q Consensus 188 ~~-------l~~P~V~QeFinH~gvl~KvYVvG-d~v-~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~--~~l 256 (290)
.. ...++++||||+ |.-|-|.|+| +.. .++.+..-.. ..+.+..--........ ..+
T Consensus 172 ~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~p~~l 239 (315)
T TIGR01205 172 QAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEIE----------GFYDYEAKYLDGSTEYVIPAPL 239 (315)
T ss_pred HHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCCC----------CeeCcccccCCCCeeEEeCCCC
Confidence 52 356899999995 8899999999 432 2222221100 01111110000000000 011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 257 DPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 257 d~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
++ .-.+.++++|..+-++||+ ..+++|++
T Consensus 240 ~~-----~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 269 (315)
T TIGR01205 240 DE-----ELEEKIKELALKAYKALGCRGLARVDFF 269 (315)
T ss_pred CH-----HHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 10 0135689999999999999 58999974
No 10
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.75 E-value=6.1e-07 Score=85.05 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=104.1
Q ss_pred CceEEEecccc---hHH--HHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC
Q 022919 73 PFDVVLHKLSG---MEW--CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (290)
Q Consensus 73 p~DvILHKltd---~~~--~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~ 147 (290)
.||+|+-+-.. ..+ ...+-++.+.. .+.|+.|+++++...|+..+++... .+|+-++.+ +.+
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~-g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~ 144 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPT-GTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKA 144 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhC-CCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHH
Confidence 67888876421 222 22344444443 5889999999999888766555421 367766543 433
Q ss_pred CchhHHHhcCCccceEeeeccccCCCCceeEEEEec-CCCC-------CCC-CCCeeEEeeeec-CeeEEEEEEEcceEE
Q 022919 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD-RFSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIK 217 (290)
Q Consensus 148 ~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~-~~gL-------~~l-~~P~V~QeFinH-~gvl~KvYVvGd~v~ 217 (290)
++.+-+.+.| |+|+||+...|. ..+..+-. ...+ ..+ ..|+++|+||+. .+--+.|+|||+++.
T Consensus 145 ~~~~~~~~~g---~vVvKPl~G~~G---~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv 218 (312)
T TIGR01380 145 EIRAFLAEHG---DIVLKPLDGMGG---EGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPI 218 (312)
T ss_pred HHHHHHHHcC---CEEEEECCCCCC---ceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEE
Confidence 3444444444 899999887664 44444543 2222 122 469999999985 346899999999973
Q ss_pred --EEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHH---HHhCceeeeeecC
Q 022919 218 --VVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGN---SAIGWAFGCLTLI 290 (290)
Q Consensus 218 --v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR---~~LGL~LfGfDli 290 (290)
+..|.+-+ ++..+- . .+.. .. ..++ +. ...+||..+. +++||.+.|+|+|
T Consensus 219 ~~ai~R~~~~gd~r~N~-------------~-~Gg~--~~-----~~~l-~~-e~~~ia~~~~~~~~~~gl~~agVDii 274 (312)
T TIGR01380 219 GAAVARIPAGGEFRGNL-------------A-VGGR--GE-----ATEL-SE-RDREICADVAPELKRRGLLFVGIDVI 274 (312)
T ss_pred EEEEEecCCCCCccccc-------------c-CCce--ee-----ccCC-CH-HHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 56665544 232221 0 0000 00 0122 22 2456666655 5789999999986
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=98.69 E-value=3.2e-07 Score=88.09 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=106.6
Q ss_pred CceEEEecccc---hHHHHHHHH------HHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc
Q 022919 73 PFDVVLHKLSG---MEWCKIIED------YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 143 (290)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~------y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~ 143 (290)
.||+|++.-.. ......+.. ...+...+.++.++++++...|...+++..+ +.+|+.++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~----------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE----------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc----------CCCCCEEEeC
Confidence 58999997533 222233331 1222347899999999999999886644321 3478877653
Q ss_pred cCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCC--CCC------CCCCeeEEeeeecC-eeEEEEEEEcc
Q 022919 144 KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS--LSE------LEPPMLLQEFVNHG-GILFKIYIIGE 214 (290)
Q Consensus 144 ~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~g--L~~------l~~P~V~QeFinH~-gvl~KvYVvGd 214 (290)
+.+.+.+-+++.| ..|+|+||+...|+ ..+.++.+.+. +.. -..|+++|+||... +--.-|+|+|+
T Consensus 149 -~~~~~~~~~~~~~-~~pvVvKPl~G~gG---~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g 223 (338)
T PRK12458 149 -NKEYIREFLEESP-GDKMILKPLQGSGG---QGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNG 223 (338)
T ss_pred -CHHHHHHHHHHcC-CCeEEEEECCCCCc---cCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECC
Confidence 3322323333332 23599999887665 45555655442 321 14589999999863 45789999999
Q ss_pred eEE-------EEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh---Cce
Q 022919 215 TIK-------VVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI---GWA 283 (290)
Q Consensus 215 ~v~-------v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L---GL~ 283 (290)
++. +..|-+-+ ++..+ ++ ...... ..++ .+...++|..+...| ||.
T Consensus 224 ~~v~~~g~~~a~~R~~~~~d~RsN-------------~~---~Gg~~~-----~~~l--~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 224 EPLERDGHYAAMRRVPAGGDVRSN-------------VH---AGGSVV-----KHTL--TKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEeeccceeEEEEecCCCCeeec-------------cc---CCCccc-----CcCC--CHHHHHHHHHHHHHHhhcCCe
Confidence 988 44543321 11111 00 000000 0122 234677777776666 999
Q ss_pred eeeeecC
Q 022919 284 FGCLTLI 290 (290)
Q Consensus 284 LfGfDli 290 (290)
+.|+|+|
T Consensus 281 ~~gVDli 287 (338)
T PRK12458 281 FVGLDIV 287 (338)
T ss_pred EEeEEEE
Confidence 9999986
No 12
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.68 E-value=4.3e-07 Score=95.73 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=102.0
Q ss_pred HHHHHhhccceEEEEecCCCCCC---CCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHh
Q 022919 47 KLEILARNKGISFVAIDQNRPLS---DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA 123 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~---~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (290)
.++..|.++|+.+..+|.+..+- ..+..+.+..- ...-.|+..+.....|+..+.+.|.
T Consensus 436 ~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~------------------~~t~~~s~~s~~~~~DK~~tk~lL~ 497 (752)
T PRK02471 436 ILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNG------------------NMTSKDNYISPLIMENKVVTKKILA 497 (752)
T ss_pred HHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEec------------------cccCCCHHHHHHHhhCHHHHHHHHH
Confidence 46777899999999999865432 22234443321 2345677777877779998888887
Q ss_pred hcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEec---CCCCC-------CCCCC
Q 022919 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLS-------ELEPP 193 (290)
Q Consensus 124 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~---~~gL~-------~l~~P 193 (290)
+. .|.+|++.++.+ .++...... .-..||+|+||....+ +....++-+ .+.+. .....
T Consensus 498 ~~-------GIpvP~~~~~~~-~e~a~~~~~-~~~g~PvVVKP~~g~~---G~GV~~~~~~~~~eel~~A~~~a~~~~~~ 565 (752)
T PRK02471 498 EA-------GFPVPAGDEFTS-LEEALADYS-LFADKAIVVKPKSTNF---GLGISIFKEPASLEDYEKALEIAFREDSS 565 (752)
T ss_pred HC-------CcCCCCEEEEcC-HHHHHHHHH-HhcCCCEEEEECCCCC---cCCeEEecCcCCHHHHHHHHHHHHhcCCc
Confidence 42 477899988752 222222222 1137999999965444 355555544 33332 23457
Q ss_pred eeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchh
Q 022919 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKR 230 (290)
Q Consensus 194 ~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~ 230 (290)
+++||||. |.-|-|+|||+++..+.+.-.+++.-+
T Consensus 566 vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GD 600 (752)
T PRK02471 566 VLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGD 600 (752)
T ss_pred EEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccC
Confidence 99999995 899999999999988888888887644
No 13
>PRK05246 glutathione synthetase; Provisional
Probab=98.68 E-value=1.4e-06 Score=82.49 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=83.1
Q ss_pred CceEEEecccch-----HHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC
Q 022919 73 PFDVVLHKLSGM-----EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (290)
Q Consensus 73 p~DvILHKltd~-----~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~ 147 (290)
.+|+|+-+-... .+...+-+..+.. .+.++.++++++...|...+++... .+|+..... +.+
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~ 145 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKA 145 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHH
Confidence 379998664221 1222334444444 7999999999999988877665422 367766553 333
Q ss_pred CchhHHHhcCCccceEeeeccccCCCCceeEEEE-ecCCCCC-------CC-CCCeeEEeeeecC-eeEEEEEEEcceEE
Q 022919 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA-YDRFSLS-------EL-EPPMLLQEFVNHG-GILFKIYIIGETIK 217 (290)
Q Consensus 148 ~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malv-f~~~gL~-------~l-~~P~V~QeFinH~-gvl~KvYVvGd~v~ 217 (290)
.+.+-+++.| |+|+||+..+|... ...+ .+...+. .. ..|+++|+||.-. +--..|+|+|+++.
T Consensus 146 ~~~~~~~~~~---~vVlKP~~G~~G~g---V~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv 219 (316)
T PRK05246 146 EIRAFRAEHG---DIILKPLDGMGGAG---IFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPV 219 (316)
T ss_pred HHHHHHHHCC---CEEEEECCCCCccc---eEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEh
Confidence 3334444444 99999988666433 3334 3333322 22 4699999999763 44679999999876
Q ss_pred E--EEecCC
Q 022919 218 V--VRRFSL 224 (290)
Q Consensus 218 v--~~R~Sl 224 (290)
. +.|-+-
T Consensus 220 ~~a~~R~~~ 228 (316)
T PRK05246 220 GYALARIPA 228 (316)
T ss_pred hheeEecCC
Confidence 4 556443
No 14
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.56 E-value=1.6e-06 Score=88.36 Aligned_cols=153 Identities=18% Similarity=0.269 Sum_probs=101.8
Q ss_pred ccc--hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHH
Q 022919 43 FLQ--PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQ 120 (290)
Q Consensus 43 f~~--~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~ 120 (290)
++. ..+++.|+++|+.++.+|-+.. .|.+-- -.+..+++ + ....+.+..+++...|+..+.+
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~-----~~~L~~--g~~~~~~~------~---s~~~~~s~~ai~~~~DK~~tk~ 303 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGG-----LFRLSL--GGRSIRCR------E---SLSELTSAVAMSLCDDKRLTRR 303 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCC-----EEEecC--CceEEEEE------e---ccCCCCCHHHHHHhcCHHHHHH
Confidence 554 4588999999999999774432 221100 00001110 1 1224448889999999999999
Q ss_pred HHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE-EecCCCCC-------CCCC
Q 022919 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLS-------ELEP 192 (290)
Q Consensus 121 ~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal-vf~~~gL~-------~l~~ 192 (290)
.+++. .|.+|+...+. +.+++.+..++.| |+|+||. +|+ .+..|.+ +.+++.|. ....
T Consensus 304 lL~~a-------GIpVP~~~~~~-~~~~~~~~~~~~G---~vVVKP~--~G~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~ 369 (547)
T TIGR03103 304 LVSEA-------GLQVPEQQLAG-NGEAVEAFLAEHG---AVVVKPV--RGE-QGKGISVDVRTPDDLEAAIAKARQFCD 369 (547)
T ss_pred HHHHc-------CcCCCCEEEEC-CHHHHHHHHHHhC---CEEEEEC--CCC-CCcCeEEecCCHHHHHHHHHHHHhcCC
Confidence 98853 46789988875 2222333333434 7999994 454 4577887 78887764 2346
Q ss_pred CeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCC
Q 022919 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (290)
Q Consensus 193 P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~ 227 (290)
++++|+||. |.-|.|+|||+++..+.+.--|++
T Consensus 370 ~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V 402 (547)
T TIGR03103 370 RVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEV 402 (547)
T ss_pred cEEEEEecc--CCeEEEEEECCEEEEEEEecCcEE
Confidence 899999995 789999999999998777655553
No 15
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.47 E-value=1.1e-06 Score=92.26 Aligned_cols=149 Identities=16% Similarity=0.259 Sum_probs=100.9
Q ss_pred HHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcc
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN 126 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~ 126 (290)
.+++.|.++||.+..++-. . ++|=-++.. .+.++.... --++..+++...|+..+.+.+++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~-~---------~v~lgyG~~-~~~i~~~~~------~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDG-S---------LVQLGYGKY-QRRIQAAET------DQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCC-C---------eEecCCcHH-HHHHHHhcC------CCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 4777788888888876531 1 122223331 122222221 156778899999999999988753
Q ss_pred cCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE-EecCCCCC-------CCCCCeeEEe
Q 022919 127 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLS-------ELEPPMLLQE 198 (290)
Q Consensus 127 ~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal-vf~~~gL~-------~l~~P~V~Qe 198 (290)
.|.+|+...+. +.++..+.. ..+.||+|+||.. |+ .+..|.+ +.+++.|. ....++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~--G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLD--GN-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECC--CC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 46778887764 222222222 3578999999965 44 3577887 78877664 2346899999
Q ss_pred eeecCeeEEEEEEEcceEEEEEecCCCCC
Q 022919 199 FVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (290)
Q Consensus 199 FinH~gvl~KvYVvGd~v~v~~R~Slpn~ 227 (290)
||. |.-|.|||+|+++..+.|.--+.+
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v 320 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHV 320 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEE
Confidence 997 778999999999999888877754
No 16
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.36 E-value=3.9e-06 Score=89.76 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=81.4
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE-Ee
Q 022919 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AY 182 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal-vf 182 (290)
|+..+++...|+..+.+.|++. .|.+|+...+.+ .++..+... .+.||+|+||.. |+ .+..+.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~s-~~ea~~~~~--~ig~PvVVKP~~--g~-~G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQS-AEDAWEAAQ--DLGYPVVIKPYD--GN-HGRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECC--CC-CccCEEEEeC
Confidence 6777899999999999998853 467899887742 222222222 467999999975 43 2466777 77
Q ss_pred cCCCCC-------CCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCc
Q 022919 183 DRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 228 (290)
Q Consensus 183 ~~~gL~-------~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~ 228 (290)
+++.|. ....++++|+||. |.-|-|+|+|+++..+.|+-.|++.
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~ 320 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVI 320 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCcee
Confidence 777664 2246899999996 7999999999999999888777753
No 17
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.31 E-value=7.8e-06 Score=76.48 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=95.1
Q ss_pred eEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEE
Q 022919 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (290)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (290)
.++..++++++.+.|+..|.+.+.+.. +.+|++..+.+ .+++.+.+....+.||+|+||....| |..+.
T Consensus 97 ~~~~~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~---s~gv~ 165 (326)
T PRK12767 97 KVLVSSKEVIEICNDKWLTYEFLKENG-------IPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSA---SIGVF 165 (326)
T ss_pred EEEeCCHHHHHHHhcHHHHHHHHHHcC-------CCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCC---ccCeE
Confidence 345778899999999999999998643 56788877642 22222222235789999999965444 57788
Q ss_pred EEecCCCCCC---CCCCeeEEeeeecCeeEEEEEEE----cceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCC
Q 022919 180 LAYDRFSLSE---LEPPMLLQEFVNHGGILFKIYII----GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252 (290)
Q Consensus 180 lvf~~~gL~~---l~~P~V~QeFinH~gvl~KvYVv----Gd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~ 252 (290)
++.+.+.|.. ...++++|||| .|.-|-+-++ |..+.+..+..+.- ..+ ....
T Consensus 166 ~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~-~~g------~~~~------------ 224 (326)
T PRK12767 166 KVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV-RAG------ETSK------------ 224 (326)
T ss_pred EeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee-cCC------ceeE------------
Confidence 9988887642 22499999999 4455554444 33444444433210 000 0000
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 253 DADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 253 ~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
. ...+.+.+.++++.+-++||++ .+++|++
T Consensus 225 --~------~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~ 255 (326)
T PRK12767 225 --G------VTVKDPELFKLAERLAEALGARGPLNIQCF 255 (326)
T ss_pred --E------EEcCCHHHHHHHHHHHHhcCCeeeEEEEEE
Confidence 0 0011345788999999999995 8888874
No 18
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.30 E-value=1.1e-05 Score=75.25 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=103.5
Q ss_pred HHHHhhccceEEEEecCCCCCC----CCCCceEEEecccchH-HHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHH
Q 022919 48 LEILARNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQD 121 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~----~Qgp~DvILHKltd~~-~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~ 121 (290)
+....++.|.+.+.+|.+..+. ....+|+++--+.+.. -...++.+.+.+ ++.++ .++.++...+|+..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHH
Confidence 4555577899999998765432 2357899988775531 012366666666 67777 448899999999988777
Q ss_pred HhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCe
Q 022919 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 194 (290)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~ 194 (290)
++. .+.+|++..+... .....+.||+|+||....| |-.+.++.+.+.|.. -..++
T Consensus 103 l~~--------~ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEech-------hhhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 651 2678998887421 1224689999999965544 466778999888742 13479
Q ss_pred eEEeeeecCeeEEEEEEEcc
Q 022919 195 LLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 195 V~QeFinH~gvl~KvYVvGd 214 (290)
++||||. |.-|=|-|+|+
T Consensus 165 lVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 165 IVQEYIP--GREMTVSILET 182 (299)
T ss_pred EEEcccc--ceEEEEEEEcC
Confidence 9999996 78999999986
No 19
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.28 E-value=4.2e-05 Score=71.79 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=125.7
Q ss_pred HHHHhhccceEEEEecCCC-CCCC---CCCceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHH
Q 022919 48 LEILARNKGISFVAIDQNR-PLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQD 121 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~-pl~~---Qgp~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~ 121 (290)
..+..++.|.+.+.+|.+. .+-. ..++|+++-=+.+..- ...++.+.+.+ ++.++- .+.+....+|+..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 4444567899999998763 2111 2367766654433210 12355566655 566654 56899999999999888
Q ss_pred HhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC----C--CCCee
Q 022919 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L--EPPML 195 (290)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l--~~P~V 195 (290)
+++. .|.+|++..+.... . ....+.||+|+||.. |. .|..+.+|.+++.|.. + ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~--gg-ss~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSS--GG-SSIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCC--CC-CCcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 8754 46678887774211 1 134689999999954 43 2578999999998752 1 24799
Q ss_pred EEeeeecCeeEEEEEEEcceEE--EEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHH
Q 022919 196 LQEFVNHGGILFKIYIIGETIK--VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKG 273 (290)
Q Consensus 196 ~QeFinH~gvl~KvYVvGd~v~--v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA 273 (290)
+||||. |.=|-|.|+|+... +..+|.-..++.. ..+ ..-+.... ...++ ......++++|
T Consensus 170 vEefI~--G~E~tv~vl~~~~~~~~~i~~~~~~~~~~------~k~--~~~~~~~~---P~~l~-----~~~~~~i~~~a 231 (296)
T PRK14569 170 IEQWVT--GKEITVAIVNDEVYSSVWIEPQNEFYDYE------SKY--SGKSIYHS---PSGLC-----EQKELEVRQLA 231 (296)
T ss_pred EEcccc--cEEEEEEEECCcCcceEEEecCCCcCChh------hcc--CCCcEEEe---CCCCC-----HHHHHHHHHHH
Confidence 999995 78899999998642 2222211111000 000 00000000 00111 01145789999
Q ss_pred HHHHHHhCce-eeeeecC
Q 022919 274 LQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 274 ~~LR~~LGL~-LfGfDli 290 (290)
..+-++||+. +.++|++
T Consensus 232 ~~~~~~Lg~~G~~rvD~~ 249 (296)
T PRK14569 232 KKAYDLLGCSGHARVDFI 249 (296)
T ss_pred HHHHHHhCCceEEEEEEE
Confidence 9999999974 7777763
No 20
>PRK06849 hypothetical protein; Provisional
Probab=98.26 E-value=4e-05 Score=74.13 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE
Q 022919 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (290)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal 180 (290)
+..-+++.++.++|+..+.+.++++ .+.+|++..+++ .+++ ..+......||+|+||...+|+ ..+.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l-~~~~~~~~~~P~vlKP~~~~~~---~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAI-RNFMFKTPHTPYVLKPIYSRFV---RRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHH-HHHhhcCCCCcEEEEeCcccCC---CeEEE
Confidence 3467889999999999999999865 467899998852 2222 2222223479999999877665 45666
Q ss_pred EecCCCCCCC----CCCeeEEeeeecCeeEEEEEEEcceEEEE-EecCCCCCchhhhhccceeeeeCCccCCCcCCCcCC
Q 022919 181 AYDRFSLSEL----EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 255 (290)
Q Consensus 181 vf~~~gL~~l----~~P~V~QeFinH~gvl~KvYVvGd~v~v~-~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ 255 (290)
+.+++.+..+ ..|+++||||.-...-.=.++.++++... ... +....+ ......|.
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~--~~~~~~----~~~~~~~~------------- 231 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYK--PEYCAG----SGAQIAFQ------------- 231 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEee--ccccCC----CCceeEeE-------------
Confidence 7777766654 34899999998443222233444554332 110 100000 00000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 256 LDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 256 ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.-..+.+.+++..+-++||++ .++||+|
T Consensus 232 -------~~~~~~l~~~~~~~~~~l~~~G~~~~df~ 260 (389)
T PRK06849 232 -------PINHPRIEEFVTHFVKELNYTGQISFDFI 260 (389)
T ss_pred -------ECCcHHHHHHHHHHHHhcCceeEEEEEEE
Confidence 011345889999999999998 8889975
No 21
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.22 E-value=1.6e-05 Score=76.96 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=118.7
Q ss_pred HHHHhhccceEEEEecCCCCCCCCCCceEEE-ecccchH------------------HHHHHHHHHHhCCCeEEeCChhH
Q 022919 48 LEILARNKGISFVAIDQNRPLSDQGPFDVVL-HKLSGME------------------WCKIIEDYRQKHPEVTILDPPDA 108 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvIL-HKltd~~------------------~~~~l~~y~~~hP~v~ViDP~~~ 108 (290)
+...|++.|+.++-+|.+..-....-.|-.+ --..|.+ +....-++.+++ ..+.-++++
T Consensus 17 l~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~~~~ 94 (372)
T PRK06019 17 LALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPGPDA 94 (372)
T ss_pred HHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcCHHH
Confidence 5556788899999999864222111122211 1222221 111122344454 457789999
Q ss_pred HhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC
Q 022919 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 188 (290)
Q Consensus 109 i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~ 188 (290)
++...||..|-+.++++ .|.+|++..+++ .+++.+.. ..+.||+|+||. .|..+++...++.+++.|.
T Consensus 95 ~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~--~~g~~g~Gv~~v~~~~el~ 162 (372)
T PRK06019 95 LAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTR--RGGYDGKGQWVIRSAEDLE 162 (372)
T ss_pred HHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeC--CCCcCCCCeEEECCHHHHH
Confidence 99999999999998864 467889988852 22222222 357899999995 4444568888999988775
Q ss_pred C----C-CCCeeEEeeeecCeeEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCC
Q 022919 189 E----L-EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 260 (290)
Q Consensus 189 ~----l-~~P~V~QeFinH~gvl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~ 260 (290)
. + ..++++||||+- +.-|=|-++++ .+.+. |-..|... .+.+..+- .++ .+++
T Consensus 163 ~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~~~~G~~~~~--p~~e~~~~------~gi~~~~~---~pa-----~~~~-- 223 (372)
T PRK06019 163 AAWALLGSVPCILEEFVPF-EREVSVIVARGRDGEVVFY--PLVENVHR------NGILRTSI---APA-----RISA-- 223 (372)
T ss_pred HHHHhcCCCCEEEEecCCC-CeEEEEEEEECCCCCEEEe--CCcccEEe------CCEEEEEE---CCC-----CCCH--
Confidence 3 2 358999999984 33344444433 12211 11112111 12222110 000 1110
Q ss_pred CCCCCHHHHHHHHHHHHHHhCce-eeeeec
Q 022919 261 AGENSLPALCWKGLQGNSAIGWA-FGCLTL 289 (290)
Q Consensus 261 ~e~p~~~~v~~iA~~LR~~LGL~-LfGfDl 289 (290)
.-.+.+.++|+.+-++||+. .|++|+
T Consensus 224 ---~~~~~~~~~a~~i~~~L~~~G~~~vEf 250 (372)
T PRK06019 224 ---ELQAQAEEIASRIAEELDYVGVLAVEF 250 (372)
T ss_pred ---HHHHHHHHHHHHHHHHcCccceeEEEE
Confidence 01456889999999999975 566665
No 22
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.19 E-value=4.6e-05 Score=72.76 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=93.1
Q ss_pred HHHHHhhccceEEEEecCCCCCCCCCCce-EEEecccchHH-------------------HHHHHHHHHhCCCeEEeCCh
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEW-------------------CKIIEDYRQKHPEVTILDPP 106 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Qgp~D-vILHKltd~~~-------------------~~~l~~y~~~hP~v~ViDP~ 106 (290)
-|...|++.|+.++-+|.+..-....-.| .++...+|.+. ...+..+.+. .+.+.-++
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~p~~ 90 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLFPSP 90 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeECCCH
Confidence 36667788999999999864211111112 12233344221 1123333333 25566888
Q ss_pred hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCC
Q 022919 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (290)
Q Consensus 107 ~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~g 186 (290)
++++...||..+-+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||.. |...+..+.++.+++.
T Consensus 91 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~--~g~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAA--LQELGFPVVLKART--GGYDGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHH--HHHcCCCEEEEeCC--CCCCCCCEEEECCHHH
Confidence 9999999999999988754 467899988852 2222121 13578999999965 3334567889999887
Q ss_pred CCC----C-CCCeeEEeeeecCeeEEEEEEE
Q 022919 187 LSE----L-EPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 187 L~~----l-~~P~V~QeFinH~gvl~KvYVv 212 (290)
|.. + ..++++||||+.+ .-|=|.++
T Consensus 159 l~~a~~~~~~~~~lvEe~I~~~-~E~sv~~~ 188 (352)
T TIGR01161 159 LPQAAKELGDRECIVEEFVPFE-RELSVIVA 188 (352)
T ss_pred HHHHHHhcCCCcEEEEecCCCC-eEEEEEEE
Confidence 742 2 3489999999853 33334343
No 23
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.18 E-value=4e-06 Score=71.07 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=79.4
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCCC-
Q 022919 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 190 (290)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l- 190 (290)
+.|+..|.+.+.+. .+.+|++..+++ .+++.+.... +.||+|+||....|+ ..+.++.+++.|...
T Consensus 2 ~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~~--~~~p~vvKp~~g~gs---~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 2 CNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAED--LGFPFVVKPVDGSGS---RGVFIVHSPEELEAAL 68 (184)
T ss_dssp TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHHH--SSSSEEEEESS-STT---TT-EEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHHH--cCCCEEEEcCccccC---CCEEEeCCHHHHHHHH
Confidence 56788888888754 356899988853 2223333333 449999999887664 678889999988643
Q ss_pred ----------CCCeeEEeeeecCeeEEEEEEEcceEEE-EEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCC
Q 022919 191 ----------EPPMLLQEFVNHGGILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 259 (290)
Q Consensus 191 ----------~~P~V~QeFinH~gvl~KvYVvGd~v~v-~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~ 259 (290)
..++++||||+-...=+-+++.++.+.+ .......+ +...... + ... .. ...
T Consensus 69 ~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~--~-~~~-------~~--~~~---- 131 (184)
T PF13535_consen 69 AEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQ-SPGHFSG--G-VPT-------GY--SVP---- 131 (184)
T ss_dssp HHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEE-ETCCCSS--S-EEE-------EE--EES----
T ss_pred HHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEecc-ccccccc--c-eee-------ee--ecc----
Confidence 3579999999943444555555555433 22222211 0000000 0 000 00 000
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCc--eeeeeecC
Q 022919 260 IAGENSLPALCWKGLQGNSAIGW--AFGCLTLI 290 (290)
Q Consensus 260 ~~e~p~~~~v~~iA~~LR~~LGL--~LfGfDli 290 (290)
.+.+..+.+.+.+..+-+.+|+ -.|++|+|
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~ 163 (184)
T PF13535_consen 132 -SEPPLPEELRDLARKLLRALGYRNGFFHIDFI 163 (184)
T ss_dssp ---CEHHHHHHHHHHHHHHHHT--SEEEEEEEE
T ss_pred -cccccHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 0111236788889999999998 88899875
No 24
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.05 E-value=0.00015 Score=69.24 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=88.7
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCC--
Q 022919 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 148 (290)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~-- 148 (290)
.+|+++-=+.+..= ...+|.+.+.+ ++..+=+ ..+....+|+..+-+.+++. .|.+|+++.+......
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELL-GIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 57888765543210 11356666654 6666654 67888899999999998854 4678888888533221
Q ss_pred chhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 149 ~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..... ...+.||+|+||....| |-.+.++.+.+.|.. ...++++|+||. |.=|-|.|+|+
T Consensus 153 ~~~~~-~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 153 SLAEI-EAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred hHHHH-HHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 11122 24689999999966544 456889999987752 457899999998 68899999996
No 25
>PRK07206 hypothetical protein; Provisional
Probab=98.02 E-value=9.7e-05 Score=71.75 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=69.2
Q ss_pred CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCC-ccceEeeeccccCCCCcee
Q 022919 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.++.-.+++.+....|+..|.+.+++. .+.+|++..++ +.+++.+.++..|. .+|+|+||....| |..
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~g---s~g 161 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAG---SDG 161 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCC---CCC
Confidence 333456678888889999999998864 46678888774 22223333333332 4499999977665 467
Q ss_pred EEEEecCCCCCC--------------CCCCeeEEeeeecCeeEEEEEEE--cceEE
Q 022919 178 LFLAYDRFSLSE--------------LEPPMLLQEFVNHGGILFKIYII--GETIK 217 (290)
Q Consensus 178 Malvf~~~gL~~--------------l~~P~V~QeFinH~gvl~KvYVv--Gd~v~ 217 (290)
+.++.+.+.|.. -..++++||||. |.-|=|-++ +..+.
T Consensus 162 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~ 215 (416)
T PRK07206 162 VFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHL 215 (416)
T ss_pred EEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEE
Confidence 889999887632 125799999997 455554433 44443
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.99 E-value=0.00013 Score=69.82 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=67.7
Q ss_pred eEEeCChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeE
Q 022919 100 VTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (290)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~M 178 (290)
+.+.-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.... ..+.||+|+||....| |-.+
T Consensus 86 ~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~~---s~gv 152 (380)
T TIGR01142 86 YFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSSS---GKGQ 152 (380)
T ss_pred CeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCcC---CCCe
Confidence 44556788888889998877764 433 467899888853 22222222 3678999999964433 5678
Q ss_pred EEEecCCCCCC-----------CCCCeeEEeeeecCeeEEEEEEE
Q 022919 179 FLAYDRFSLSE-----------LEPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 179 alvf~~~gL~~-----------l~~P~V~QeFinH~gvl~KvYVv 212 (290)
.++.+++.|.. ...++++||||.. +.-+-|.++
T Consensus 153 ~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 153 SVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred EEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 89999987742 1358999999974 455555555
No 27
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=97.89 E-value=0.00015 Score=75.78 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=142.0
Q ss_pred CccEEEEEEechhhhhhccchH-HHHHhhccceEEE----EecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCe
Q 022919 26 PERLVVGYALTSKKKKSFLQPK-LEILARNKGISFV----AIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~~~~-l~~~~~~~gi~~v----~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v 100 (290)
....+||.|.-+||.++==-.. +-.++.-.=|+.| .+=++.|.+.=--.||.|-=.+.--=-+..++|.+.. +-
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLR-nP 116 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-NP 116 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhc-CC
Confidence 3446999999999865531111 3333333333333 2234556665556777765444322234578899854 33
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCC-chh-H------HHhcCC--ccceEeeecccc
Q 022919 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-IPD-Q------VFEAGL--KLPLVAKPLVVD 170 (290)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~-~~~-~------l~~agl--~fP~I~Kp~vA~ 170 (290)
.||.-++-++.|+||...|+.|+.- .|.+|++..++.+..+ -.. . ++-.|- .=|+|-||+-|
T Consensus 117 FviNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~- 188 (1018)
T KOG1057|consen 117 FVINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA- 188 (1018)
T ss_pred eeeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc-
Confidence 5677788899999999999999842 5677888777543321 111 1 111233 44999999753
Q ss_pred CCCCceeEEEEecCC---CCC-----------CCC--------CCeeEEeeeecCeeEEEEEEEcceE-EEEEecCCCCC
Q 022919 171 GSAKSHELFLAYDRF---SLS-----------ELE--------PPMLLQEFVNHGGILFKIYIIGETI-KVVRRFSLPNV 227 (290)
Q Consensus 171 Gs~~SH~Malvf~~~---gL~-----------~l~--------~P~V~QeFinH~gvl~KvYVvGd~v-~v~~R~Slpn~ 227 (290)
+-|.++|-|--. |-. ... --.+.-||.+-+|.--|||-||-.+ +.-.|+|.--
T Consensus 189 ---EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvv- 264 (1018)
T KOG1057|consen 189 ---EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVV- 264 (1018)
T ss_pred ---ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccc-
Confidence 459999988655 221 111 2389999999999999999999655 4466777532
Q ss_pred chhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 228 SKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 228 ~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
+|... ..++.++.-- .+.+.+.+ +.+|+.+--+|+-+.+||||+
T Consensus 265 --------DGkV~--------Rns~GKEvRY-pv~Ls~~E--K~iA~KVciAF~Q~VCGFDLL 308 (1018)
T KOG1057|consen 265 --------DGKVE--------RNSDGKEVRY-PVILNSSE--KQIARKVCIAFKQTVCGFDLL 308 (1018)
T ss_pred --------cceee--------ecCCCceeec-eeecChhh--HHHHhHHHhhccccccchHHh
Confidence 11110 0001111100 01121222 669999999999999999985
No 28
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.89 E-value=7.9e-05 Score=78.56 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=60.7
Q ss_pred ceecCceEEEccCCCCchhHHHhcCC-ccceEeeeccccCCCCceeEEEEecC---CCCC-------CCCCCeeEEeeee
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHELFLAYDR---FSLS-------ELEPPMLLQEFVN 201 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA~Gs~~SH~Malvf~~---~gL~-------~l~~P~V~QeFin 201 (290)
.|.+|.+.++.... +...... .+ .||+|+||.-..++ -...++.+. +.+. .....+++|+||.
T Consensus 487 GIPVP~g~~~~~~~-~a~~~~~--~~~g~PVVVKP~~g~~G---~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~ 560 (737)
T TIGR01435 487 GFRVPFGDEFSSQA-LALEAFS--LFENKAIVVKPKSTNYG---LGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP 560 (737)
T ss_pred CcCCCCEEEECCHH-HHHHHHH--HhcCCCEEEeeCCCCCc---CCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 58899999885321 1111111 23 58999999654433 455666553 3232 2244699999996
Q ss_pred cCeeEEEEEEEcceEEEEEecCCCCCch
Q 022919 202 HGGILFKIYIIGETIKVVRRFSLPNVSK 229 (290)
Q Consensus 202 H~gvl~KvYVvGd~v~v~~R~Slpn~~~ 229 (290)
|.-|-|+|||+++..+.+.-.+|+.-
T Consensus 561 --G~EyRv~VIg~kvvaa~~R~Pa~ViG 586 (737)
T TIGR01435 561 --GTEYRFFVLNDKVEAVLLRVPANVTG 586 (737)
T ss_pred --CCEEEEEEECCeEEEEEEECCCCEEE
Confidence 89999999999999988888888853
No 29
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.81 E-value=9.5e-05 Score=70.95 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=85.9
Q ss_pred CceE---EEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCC--
Q 022919 73 PFDV---VLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (290)
Q Consensus 73 p~Dv---ILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 146 (290)
.+|+ .+|.-.+++ ..+|.+.+.. ++.++ -+..++...+|+..+-+.+++. .|.+|+++.+....
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~~-gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDTL-GIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHHc-CcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 3677 455554442 1245555543 46665 5688999999999999998753 47789998885321
Q ss_pred CCchhHH-HhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 147 LSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 147 ~~~~~~l-~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
....+.. ....+.||+|+||.. |+ .|....++.+++.|.. ...++++||||. |.=|=|-|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~--gg-sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVE--GG-SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCC--CC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 1111111 123589999999955 43 2477889999887742 346899999995 78999999974
No 30
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.80 E-value=0.0001 Score=70.53 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=85.2
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCch
Q 022919 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (290)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (290)
.+|+++--+.+..= .-.+|.+.+.. ++..+- ++.+....+|+..+.+.+++. .|.+|++..+.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 47877655543210 23466666654 566664 466778889999998888754 46778888885322 11
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
....+.||+|+||....| |..+.++.+.+.|. ....++++||||. |.=|=|-|+|+.
T Consensus 160 ---~~~~l~~P~iVKP~~~gs---S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~ 223 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSGS---SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNG 223 (343)
T ss_pred ---hhhhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCC
Confidence 134688999999955432 57788899999875 2356899999997 566677888763
No 31
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.76 E-value=0.00083 Score=73.61 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=70.4
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 022919 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~ 183 (290)
-++++++...||..+.+.++++ .|.+|++..+.+ .++..+.. ..+.||+|+||.-.. .+..|.++.+
T Consensus 659 ~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~~~~---Gg~Gv~iv~~ 725 (1066)
T PRK05294 659 TSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPSYVL---GGRAMEIVYD 725 (1066)
T ss_pred CCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeCCCC---CCCcEEEECC
Confidence 5688999999999999998865 366788888752 22222222 357899999995543 4578999999
Q ss_pred CCCCCC---------CCCCeeEEeeeecC-eeEEEEEEEcceEE
Q 022919 184 RFSLSE---------LEPPMLLQEFVNHG-GILFKIYIIGETIK 217 (290)
Q Consensus 184 ~~gL~~---------l~~P~V~QeFinH~-gvl~KvYVvGd~v~ 217 (290)
++.|.. -..|+++||||... ..-.=+++-|+.+.
T Consensus 726 ~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~ 769 (1066)
T PRK05294 726 EEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVL 769 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEE
Confidence 988752 24689999999755 34444445455333
No 32
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.63 E-value=0.00048 Score=66.34 Aligned_cols=148 Identities=13% Similarity=0.240 Sum_probs=90.9
Q ss_pred HHHHhhccceEEEEecCCCCCCC-----------------------CCCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022919 48 LEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~~-----------------------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (290)
+...+++.|+.++.+|.+..-.. ...+|+|+--..+.. ...+.+. .+. .+.+.-
T Consensus 27 ~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l-~~~-g~~~~~ 103 (395)
T PRK09288 27 VAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVEL-EKE-GFNVVP 103 (395)
T ss_pred HHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHH-Hhc-CCeeCC
Confidence 45557778999888887542110 013444443222211 1223333 333 455667
Q ss_pred ChhHHhhhccHHHHHHHHh-hcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 022919 105 PPDAIKHLHNRQSMLQDVA-DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (290)
Q Consensus 105 P~~~i~~l~dR~~~l~~l~-~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~ 183 (290)
++++++...||..+-+.+. ++ .|.+|++..+++ .+++.+.. ..+.||+|+||.... .|..+.++.+
T Consensus 104 ~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~---~s~Gv~~v~~ 170 (395)
T PRK09288 104 TARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSS---SGKGQSVVRS 170 (395)
T ss_pred CHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCc---CCCCeEEECC
Confidence 7899999999998888773 33 467889988852 22222222 368899999996433 3567889999
Q ss_pred CCCCCC----C-------CCCeeEEeeeecCeeEEEEEEE
Q 022919 184 RFSLSE----L-------EPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 184 ~~gL~~----l-------~~P~V~QeFinH~gvl~KvYVv 212 (290)
++.|.+ + ..++++||||.. +.=+-|.++
T Consensus 171 ~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~ 209 (395)
T PRK09288 171 PEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTV 209 (395)
T ss_pred HHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEE
Confidence 987742 1 268999999984 444455544
No 33
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.57 E-value=0.00025 Score=77.66 Aligned_cols=101 Identities=22% Similarity=0.363 Sum_probs=71.5
Q ss_pred CeEE-eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~V-iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.+ --++++++.+.||..+.+.+.++ .|.+|++..+.+ .+++.+. ...+.||+|+||....| +..
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~G---g~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVIG---GQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCC
Confidence 4443 35689999999999999998865 356788887742 1112111 23678999999966544 578
Q ss_pred EEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 178 LFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 178 Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
|.++.+++.|.. -..|+++|+|| .|.-|=|.++.|
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~d 762 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISD 762 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEc
Confidence 999999988752 35789999999 345566666654
No 34
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.57 E-value=0.0014 Score=71.90 Aligned_cols=107 Identities=19% Similarity=0.360 Sum_probs=75.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++.+.||..+.+.++++ .|.+|++..+.+ .++..+. ...+.||+|+||....| +..
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~--~~~igyPvIVKP~~~~G---g~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEF--ASEIGYPVLVRPSYVLG---GRA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHH--HHhcCCCEEEEECCCCC---CCC
Confidence 35444 6789999999999999998865 356788888752 2222222 23678999999966555 478
Q ss_pred EEEEecCCCCCC---------CCCCeeEEeeeecC-eeEEEEEEEcceEEE
Q 022919 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHG-GILFKIYIIGETIKV 218 (290)
Q Consensus 178 Malvf~~~gL~~---------l~~P~V~QeFinH~-gvl~KvYVvGd~v~v 218 (290)
|.++.|++.|.. -..|+++||||..| .+-.=+++-|+.+.+
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i 770 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLI 770 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEE
Confidence 999999998752 24689999999754 333445555666554
No 35
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.52 E-value=0.00082 Score=65.39 Aligned_cols=127 Identities=14% Similarity=0.223 Sum_probs=89.1
Q ss_pred CceEEEecc---cchHHHHHHHHHHHhCCCeEEeCCh-hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccC---
Q 022919 73 PFDVVLHKL---SGMEWCKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD--- 145 (290)
Q Consensus 73 p~DvILHKl---td~~~~~~l~~y~~~hP~v~ViDP~-~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~--- 145 (290)
.+|+++-=+ .+++ ..+|.+.+.. ++..+=+- .+....+|+..+-+.+++. .|.+|++..+...
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~~-giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKVM-DIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 588876555 3332 3466777665 66776665 5888999999998888753 4667888777421
Q ss_pred --CCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 146 --SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 146 --~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
.++..+.+ ...+.||+|+||. +|.+ |..+.++.+.+.|.. .+.++++||||. |.=+-|-|+|+.
T Consensus 157 ~~~~~~~~~~-~~~lg~PviVKP~--~~Gs-S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDI-KEVLGYPVIVKPA--VLGS-SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHH-HHhcCCCEEEEeC--CCCC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 11111122 2468999999994 3332 578999999987752 346799999998 788999999984
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.48 E-value=0.0017 Score=67.02 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=99.3
Q ss_pred CccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCce-EEEecccchHH------------------
Q 022919 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEW------------------ 86 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~D-vILHKltd~~~------------------ 86 (290)
....+||....- ....-+...|++.|++++.+|.+..-....-.| .++...+|.+.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345578887776 222336667888999999999865311100011 12222333210
Q ss_pred -HHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEee
Q 022919 87 -CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAK 165 (290)
Q Consensus 87 -~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~K 165 (290)
...+ ++.+++ .+.+.-++++++...||..+-+.+.+. .|.+|+|..+++ .+++.+. ...+.||+|+|
T Consensus 95 ~~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~--~~~ig~P~VvK 162 (577)
T PLN02948 95 DVDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKA--GDLFGYPLMLK 162 (577)
T ss_pred CHHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHH--HHhcCCcEEEE
Confidence 1223 233333 233567789999999999999988754 467899988852 2222222 23678999999
Q ss_pred eccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeec
Q 022919 166 PLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNH 202 (290)
Q Consensus 166 p~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH 202 (290)
| .+|++++..+.++.+++.|.. ...++++++||+.
T Consensus 163 P--~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 163 S--RRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred e--CCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 9 445555678889999987742 2468999999976
No 37
>PRK08462 biotin carboxylase; Validated
Probab=97.39 E-value=0.00071 Score=66.71 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=90.9
Q ss_pred hhcc-chHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeE-EeCChhHHhhhccHHHH
Q 022919 41 KSFL-QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT-ILDPPDAIKHLHNRQSM 118 (290)
Q Consensus 41 ~~f~-~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~-ViDP~~~i~~l~dR~~~ 118 (290)
+++. .+.++.+|++.+++.+--=.. . ++.. ..+.+..+++ ++. +--++++++.+.|+..|
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g-~-------------lse~---~~~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG-F-------------LSEN---QNFVEICSHH-NIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC-c-------------cccC---HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHH
Confidence 3554 467899999988876643221 1 1211 1244444555 454 45788999999999999
Q ss_pred HHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCCC------
Q 022919 119 LQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (290)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l------ 190 (290)
.+.+++.. |.+|+.. .++ +.++.... ...+.||+|+||....| |..|.++.+++.|...
T Consensus 122 r~~l~~~g-------Ip~pp~~~~~~~-~~~~~~~~--~~~~g~PvvvKP~~g~g---s~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRAG-------VPVIPGSDGALK-SYEEAKKI--AKEIGYPVILKAAAGGG---GRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHCC-------CCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHH
Confidence 99988643 4555543 232 21112122 23578999999955443 6889999999987531
Q ss_pred -------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 191 -------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 191 -------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..++++||||..+ .-|-|.++||
T Consensus 189 ~~~~~~~~~~vlvEe~i~g~-~e~~v~v~~~ 218 (445)
T PRK08462 189 EALSAFGDGTMYMEKFINNP-RHIEVQILGD 218 (445)
T ss_pred HHHhccCCCcEEEeccCCCC-eEEEEEEEEC
Confidence 2469999999753 4477777755
No 38
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.37 E-value=0.0021 Score=70.58 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=93.4
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
++.++ =++++++...||..+.+.++++ .+.+|++..+++ .+++.+. ...+.||+|+||.... ++..
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEV--AEEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHH--HHHcCCCeEEEcCCCC---CCCC
Confidence 35444 4688999999999999988864 366799988852 2222222 2357899999996433 4577
Q ss_pred EEEEecCCCCCC-----C----CCCeeEEeeeecCeeEEEEEEEcce-EEEEEecCCCCCchhhhhccceeeeeCCccCC
Q 022919 178 LFLAYDRFSLSE-----L----EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (290)
Q Consensus 178 Malvf~~~gL~~-----l----~~P~V~QeFinH~gvl~KvYVvGd~-v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~ 247 (290)
+.++.+++.|.. + ..++++||||+.. .=|-+-|+.|. -.+..-++.-|++....... +. .+-.
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~-~Eisv~v~rd~~g~~~~~~~~e~~dp~gih~g-~~-----~~~~ 251 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGW-KEYEYEVMRDKNDNCIIVCSIENIDPMGVHTG-DS-----ITVA 251 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCc-eEEEEEEEEcCCCCEEEEeeeeeccccceecC-Ce-----EEEe
Confidence 889999998753 1 2479999999743 23333344331 11222233333321110000 00 0000
Q ss_pred CcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce--eeeeec
Q 022919 248 AASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA--FGCLTL 289 (290)
Q Consensus 248 ~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~--LfGfDl 289 (290)
++ ..+++ .....+.++|..+-++||+. .+.+|+
T Consensus 252 Pa----~~l~~-----~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 252 PA----QTLTD-----KEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred CC----CCCCH-----HHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 00 01110 11456889999999999998 555664
No 39
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.35 E-value=0.00012 Score=65.66 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=76.4
Q ss_pred ceecCceEEEccCCCCchh-HHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeeeecCe
Q 022919 133 KVRVPRQMVITKDSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGG 204 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~-~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFinH~g 204 (290)
.|.+|++++++........ ......+.||+|+||.. .|| |-.+.+|.+.+.|. ....+++++||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~-~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPAS-EGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESS-TST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECC-CCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 5889999999643211111 12245799999999963 333 56688999999875 456789999999 99
Q ss_pred eEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCC--CHHHHHHHHHHHHHH
Q 022919 205 ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGEN--SLPALCWKGLQGNSA 279 (290)
Q Consensus 205 vl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p--~~~~v~~iA~~LR~~ 279 (290)
.=|-|-|+|+ .+.-...-..++ .+++|+.=-........... + +.++ -.+.++++|..+-+.
T Consensus 81 ~E~tv~vl~~~~~~~~~~~ei~~~~----------~~~d~~~Ky~~~~~~~~~~~-p--a~l~~~~~~~i~~~a~~a~~~ 147 (203)
T PF07478_consen 81 REFTVGVLGNGEPRVLPPVEIVFPS----------EFYDYEAKYQPADSETEYII-P--ADLSEELQEKIKEIAKKAFKA 147 (203)
T ss_dssp EEEEEEEEESSSTEEEEEEEEEESS----------SEEEHHHHHSGCCSCEEEES-S---SS-HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCcccCceEEEEcCC----------CceehhheeccCCCceEEEe-c--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999993 333222222222 23333221100000000000 0 1111 146799999999999
Q ss_pred hCcee
Q 022919 280 IGWAF 284 (290)
Q Consensus 280 LGL~L 284 (290)
||+.=
T Consensus 148 lg~~~ 152 (203)
T PF07478_consen 148 LGCRG 152 (203)
T ss_dssp TTTCS
T ss_pred HcCCC
Confidence 99853
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.33 E-value=0.0014 Score=70.48 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=65.8
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 022919 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~ 183 (290)
.++++++.+.|+..|-+.+++. .|.+|++..+++. ++..+.. ..+.||+|+||.-..| |..+.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~~-~e~~~~~--~~~~~PvVVKP~~g~g---S~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALALR-AVALDAL--DGLTYPVVVKPRMGSG---SVGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHHHH--HhCCCCEEEEeCCCCC---CCCeEEECC
Confidence 3578888899999988888753 4668999988532 1222222 3678999999976555 466788999
Q ss_pred CCCCCC--------CCCCeeEEeeeecCeeEEEEEEE
Q 022919 184 RFSLSE--------LEPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 184 ~~gL~~--------l~~P~V~QeFinH~gvl~KvYVv 212 (290)
.+.|.. -..++++||||.- .-|=|-++
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~G--~E~sVe~i 198 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVEG--DEYSVETL 198 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeecccC--CcEEEEEE
Confidence 887642 2568999999973 45555444
No 41
>PRK05586 biotin carboxylase; Validated
Probab=97.32 E-value=0.00043 Score=68.48 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=74.7
Q ss_pred HHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeec
Q 022919 90 IEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 167 (290)
Q Consensus 90 l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~ 167 (290)
+.+..+..-=..+--++++++.+.||..+-+.+++. .|.+|++. .++ +.+++.+. ...+.||+|+||.
T Consensus 91 ~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~ 160 (447)
T PRK05586 91 FAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKAS 160 (447)
T ss_pred HHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEEC
Confidence 333334432223557889999999999999988754 36677663 333 22222222 2368899999995
Q ss_pred cccCCCCceeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 168 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
. |+ .|..|.++.+++.|.+. ..++++||||... .-|-|.|++|
T Consensus 161 ~--gg-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d 216 (447)
T PRK05586 161 A--GG-GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGD 216 (447)
T ss_pred C--CC-CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEEC
Confidence 5 54 57899999999987431 3589999999854 4477777775
No 42
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.12 E-value=0.015 Score=55.93 Aligned_cols=169 Identities=10% Similarity=0.026 Sum_probs=89.3
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCcc-ceEeeeccccCCCCceeEEEEecCCCCC-
Q 022919 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFSLS- 188 (290)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~Kp~vA~Gs~~SH~Malvf~~~gL~- 188 (290)
.+-|.......+++ ..|.+|....+.+...+ .+.+.+.--.+ |+|+||+..++ . ..+.++-+.+...
T Consensus 34 ~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~Gs~--G-rGI~~i~~~~~~~~ 102 (317)
T TIGR02291 34 LVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQGSG--G-KGILVITSRKDGRY 102 (317)
T ss_pred ccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCCCC--c-cCeEEEEecccccc
Confidence 33444545455442 35788997766422222 22222221245 69999977444 3 4566665543211
Q ss_pred -------------------------CCCCC--eeEEeee--ecCe---------eEEEEEEEcceEEE-EEecCCC----
Q 022919 189 -------------------------ELEPP--MLLQEFV--NHGG---------ILFKIYIIGETIKV-VRRFSLP---- 225 (290)
Q Consensus 189 -------------------------~l~~P--~V~QeFi--nH~g---------vl~KvYVvGd~v~v-~~R~Slp---- 225 (290)
.+..+ ..+|||+ .|.. --..|+|+|+.... ..|.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~~~~~~~ 182 (317)
T TIGR02291 103 RKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLPTRASDG 182 (317)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEccCccCCc
Confidence 22222 5677886 4422 47999999999875 4454432
Q ss_pred --CCchhhhhc----cceeeeeCCcc-CCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 226 --NVSKRELAK----VVSVFRFPRVS-SAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 226 --n~~~~~~~~----~~~~~~f~~vS-~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
|+..+.... .+|.+...-.. +..+....+...-...+.|..+.+.++|....+.+|+.++|.|+|
T Consensus 183 ~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvDii 254 (317)
T TIGR02291 183 KANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVDMV 254 (317)
T ss_pred ccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 333332110 11111111000 111111111111112356777889999999999999999999985
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.06 E-value=0.0061 Score=59.37 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=89.5
Q ss_pred hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022919 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (290)
..+.++|++.++++|-+..+.|+. ..+.++.+++ .+.++ -+.++++...|+..+-+.+++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l~------------------~~~~d~l~~~-Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPLI------------------DGLADILRAN-GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHHH------------------HHHHHHHHhC-CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 347788888888888766654432 2344444443 45445 566888999999999888875
Q ss_pred cccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC---------CCCCee
Q 022919 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPML 195 (290)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------l~~P~V 195 (290)
. .|.+|++..+.+ .++..+.+ ..+.||+|+||.- | +.+..+.++.+.+.+.. ...+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~--~-~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDG--L-AAGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCC--C-CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 4 466788887742 22222222 2578999999963 3 34678999999887631 134799
Q ss_pred EEeeeecCeeEEEEEEEcce
Q 022919 196 LQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 196 ~QeFinH~gvl~KvYVvGd~ 215 (290)
+|||+.--.+=.=+++-|+.
T Consensus 145 vEe~i~G~E~sv~~~~~g~~ 164 (379)
T PRK13790 145 FETFLEGEEFSLMTFVNGDL 164 (379)
T ss_pred EEEcccCceEEEEEEeeCCE
Confidence 99999643333334444553
No 44
>PLN02735 carbamoyl-phosphate synthase
Probab=97.05 E-value=0.0094 Score=65.82 Aligned_cols=128 Identities=17% Similarity=0.309 Sum_probs=86.0
Q ss_pred CceEEEecccch---HHHHHHHHHHHhCC--------Ce-EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE
Q 022919 73 PFDVVLHKLSGM---EWCKIIEDYRQKHP--------EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM 140 (290)
Q Consensus 73 p~DvILHKltd~---~~~~~l~~y~~~hP--------~v-~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v 140 (290)
..|.|+=-.-++ .+...+.++..+++ .+ ++--++++++...||..+-+.+.++ .|.+|++.
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~ 721 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGG 721 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCee
Confidence 345554333332 23455666655554 33 4567899999999999999998865 36678887
Q ss_pred EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEE
Q 022919 141 VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYI 211 (290)
Q Consensus 141 ~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYV 211 (290)
.+++ .++..+. ...+.||+|+||.. |. .+..|.+|.+++.|.. -..|+++|+||.+ |.=+=|-+
T Consensus 722 ~v~s-~eea~~~--a~~iGyPvvVKP~~--g~-gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~v 794 (1102)
T PLN02735 722 IARS-EADALAI--AKRIGYPVVVRPSY--VL-GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDA 794 (1102)
T ss_pred EeCC-HHHHHHH--HHhcCCCeEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEE
Confidence 7742 1112111 23689999999955 33 3568999999998752 1358999999974 56677777
Q ss_pred Ecc
Q 022919 212 IGE 214 (290)
Q Consensus 212 vGd 214 (290)
++|
T Consensus 795 l~D 797 (1102)
T PLN02735 795 LAD 797 (1102)
T ss_pred EEC
Confidence 775
No 45
>PLN02735 carbamoyl-phosphate synthase
Probab=97.05 E-value=0.0077 Score=66.52 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=93.0
Q ss_pred HHHHhhccceEEEEecCCCCCC------------------------CCCCceEEEecccch---HHHHHHH--HHHHhCC
Q 022919 48 LEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGM---EWCKIIE--DYRQKHP 98 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~------------------------~Qgp~DvILHKltd~---~~~~~l~--~y~~~hP 98 (290)
+...+++.|++.+-+|.+-... .+..+|.|+-=+-++ .....+. ...+++-
T Consensus 49 ~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G 128 (1102)
T PLN02735 49 ACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG 128 (1102)
T ss_pred HHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC
Confidence 5667788999999999864211 012455555433221 1111121 1223332
Q ss_pred CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCc-cceEeeeccccCCCCcee
Q 022919 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~Kp~vA~Gs~~SH~ 177 (290)
=-++--++++++...||..+-+.++++ .+.+|++..+++. ++..+.. ..+. ||+|+||....|+ ..
T Consensus 129 I~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s~-eea~~~~--~~iG~yPvVVKP~~~~GG---~G 195 (1102)
T PLN02735 129 VELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATTL-DECFEIA--EDIGEFPLIIRPAFTLGG---TG 195 (1102)
T ss_pred CEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCCH-HHHHHHH--HHhCCCCEEEEeCCCCCC---Cc
Confidence 123335778888999999888888754 4677888887521 1121222 2454 9999999664454 46
Q ss_pred EEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 178 Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.++.|++.|.. ...++++||||.. ..=|=|=|++|
T Consensus 196 v~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 196 GGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 789999998752 2357999999963 34455666665
No 46
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=96.99 E-value=0.0056 Score=59.93 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeecc
Q 022919 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (290)
Q Consensus 90 l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~v 168 (290)
+.+..+++ .+.++ -++++++...|+..|-+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||..
T Consensus 78 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~~~P~VvKP~~ 146 (420)
T PRK00885 78 IVDAFRAA-GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYL--DEKGAPIVVKADG 146 (420)
T ss_pred HHHHHHHC-CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEeCC
Confidence 33333433 45555 5677889999999999998854 356888888742 22222222 3578999999965
Q ss_pred ccCCCCceeEEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 169 VDGSAKSHELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 169 A~Gs~~SH~Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..| |..+.++.+++.|.+ ...++++|||+. |.=|=|.++.|
T Consensus 147 ~~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 147 LAA---GKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred CCC---CCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 444 567889999886531 235799999997 45666666544
No 47
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.95 E-value=0.0024 Score=54.76 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=58.3
Q ss_pred ccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCCC-C
Q 022919 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-E 191 (290)
Q Consensus 113 ~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l-~ 191 (290)
.|...+++.|.++ .|.+|..+.... .....+|+|+||.-.+|+ ..+.++.+.+.+... .
T Consensus 2 ~dK~~~~~~L~~~-------gi~~P~~~~~~~----------~~~~~~~~viKp~~G~Gg---~~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-------GIPVPTTLRDSE----------PEPIDGPWVIKPRDGAGG---EGIRIVDSEDELEEFLN 61 (161)
T ss_dssp TSHHHHHHHHTTT--------S--------EE----------SS--SSSEEEEESS----------B--SS--TTE----
T ss_pred CCHHHHHHHHHcc-------CCCCCCcccccc----------ccccCCcEEEEeCCCCCC---CCeEEECCchhhccccc
Confidence 4677788888754 355673333211 123489999999887775 667788888766643 2
Q ss_pred CCeeEEeeeecCeeEEEEEEEcce----EEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHH
Q 022919 192 PPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLP 267 (290)
Q Consensus 192 ~P~V~QeFinH~gvl~KvYVvGd~----v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~ 267 (290)
.-.++||||. |.=+=+.++.+. +..+.|--+-+-... |.+.- .... ...+..+
T Consensus 62 ~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~--------~~~~G-----~~~~--------~~~~~~~ 118 (161)
T PF02655_consen 62 KLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGR--------FRYCG-----GIVP--------ADTPLKE 118 (161)
T ss_dssp ---EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEEE-----EEES------------HHH
T ss_pred cceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccce--------eeecc-----cccc--------cCCchHH
Confidence 2249999996 455555555432 222233222110000 00000 0000 1122367
Q ss_pred HHHHHHHHHHHHh-Cce-eeeeecC
Q 022919 268 ALCWKGLQGNSAI-GWA-FGCLTLI 290 (290)
Q Consensus 268 ~v~~iA~~LR~~L-GL~-LfGfDli 290 (290)
.+.++|+.+-++| ||. ++|+|+|
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I 143 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFI 143 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEE
Confidence 8999999999999 875 8999987
No 48
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=96.93 E-value=0.0085 Score=58.51 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=71.8
Q ss_pred HHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccc-eEeeec
Q 022919 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPL 167 (290)
Q Consensus 90 l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~ 167 (290)
+.+..+++ .+.++ -++++++...||..|.+.+.+. .|.+|++..+++ .+++.+.+ ..+.|| +|+||.
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEEC
Confidence 34444444 44444 6778999999999999999864 356788888852 22222222 357899 999996
Q ss_pred cccCCCCceeEEEEecCCCCCC------------CCCCeeEEeeeecCeeEEEEEEE
Q 022919 168 VVDGSAKSHELFLAYDRFSLSE------------LEPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~gL~~------------l~~P~V~QeFinH~gvl~KvYVv 212 (290)
...| |..+.++.+.+.+.. -..++++|||++. .-|=|-++
T Consensus 149 ~~~g---g~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G--~E~sv~~~ 200 (423)
T TIGR00877 149 GLAA---GKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG--EEVSLLAF 200 (423)
T ss_pred CCCC---CCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC--ceEEEEEE
Confidence 5444 467889988876532 1247999999983 45555555
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.87 E-value=0.012 Score=64.53 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHhhccceEEEEecCCCCCC------------------------CCCCceEEEecccch--HHH-HHH--HHHHHhCC
Q 022919 48 LEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGM--EWC-KII--EDYRQKHP 98 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~------------------------~Qgp~DvILHKltd~--~~~-~~l--~~y~~~hP 98 (290)
....+++.|++.|-+|.+-... .+..+|.|+-=+.++ .+. ..+ +...+++
T Consensus 32 ~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~- 110 (1050)
T TIGR01369 32 ACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY- 110 (1050)
T ss_pred HHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC-
Confidence 5556778899988888765210 123456665433222 111 111 1223333
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
++.++ -++++++...||..+.+.+.++ .+.+|++..+++. ++..+. ...+.||+|+||.... .+..
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~-~e~~~~--~~~igyPvIVKP~~g~---gg~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHSV-EEALAA--AKEIGYPVIVRPAFTL---GGTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCCH-HHHHHH--HHHhCCCeEEECCCCC---CCCC
Confidence 45444 7789999999999999998864 3567888877522 112121 2357899999996433 4577
Q ss_pred EEEEecCCCCCCC-------C--CCeeEEeeeec
Q 022919 178 LFLAYDRFSLSEL-------E--PPMLLQEFVNH 202 (290)
Q Consensus 178 Malvf~~~gL~~l-------~--~P~V~QeFinH 202 (290)
+.++.|++.|... . .++++||||+.
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 8899998877532 1 47999999984
No 50
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.76 E-value=0.0039 Score=61.31 Aligned_cols=102 Identities=12% Similarity=0.195 Sum_probs=66.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc-cCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (290)
.+.++ -++++++...|+..|.+.+.+.. |.+|++.... .+.+++.+.. ..+.||+|+||.. |+ .|+
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~g-------Ip~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~--g~-gs~ 166 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAAG-------VPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASA--GG-GGI 166 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCC--CC-CCc
Confidence 34444 55888999999999999988643 4456542111 1222222222 3578999999954 44 468
Q ss_pred eEEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEc
Q 022919 177 ELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIG 213 (290)
Q Consensus 177 ~Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvG 213 (290)
.+.++.+.+.|.. -..++++||||... .-+-+.+++
T Consensus 167 Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~ 215 (450)
T PRK06111 167 GMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP-RHIEIQLLA 215 (450)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC-cEEEEEEEE
Confidence 8999999988742 13589999999843 335554444
No 51
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.70 E-value=0.0041 Score=61.32 Aligned_cols=99 Identities=11% Similarity=0.230 Sum_probs=66.3
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (290)
+--++++++.+.|+..|.+.+++.. |.+|++. .++ +.+++.+. .+.+.||+|+||.. |+ .|..+.
T Consensus 103 ~g~~~~~~~~~~DK~~~r~~l~~~g-------Ip~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP~~--g~-gs~Gv~ 169 (451)
T PRK08591 103 IGPSAETIRLMGDKVTAKATMKKAG-------VPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKATA--GG-GGRGMR 169 (451)
T ss_pred ECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCceEE
Confidence 3468899999999999999988653 4455542 332 22112122 23678999999955 43 467899
Q ss_pred EEecCCCCCC------------C-CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 180 LAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 180 lvf~~~gL~~------------l-~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
++.+++.|.. . .+++++||||.. +.-|=|-|+||
T Consensus 170 iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 170 VVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 9999987742 1 356999999974 44455556654
No 52
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.68 E-value=0.0055 Score=62.19 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=75.2
Q ss_pred HHHHHHhCCCeEE-eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc-cCCCCchhHHHhcCCccceEeeec
Q 022919 90 IEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPL 167 (290)
Q Consensus 90 l~~y~~~hP~v~V-iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~ 167 (290)
+|...+.. .+.+ .=+..++...+||..+-+.++++ .|.+|++..+. .+.+++......+++.||+++||.
T Consensus 118 iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 44445444 3444 55667788899999888887643 46677877652 122222222233359999999996
Q ss_pred cccCCCCceeEEEEecCCCCCCC-----C-CCeeEEeeeecCeeEEEEEEEcc
Q 022919 168 VVDGSAKSHELFLAYDRFSLSEL-----E-PPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~gL~~l-----~-~P~V~QeFinH~gvl~KvYVvGd 214 (290)
.|+ .|+.+.+|.+++.|... + ..+++|+||++.-+-.=+++-++
T Consensus 190 --~GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd~d 239 (493)
T PRK06524 190 --YGD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVTRH 239 (493)
T ss_pred --CCC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEeCC
Confidence 455 47999999999987532 2 45899999987665555666654
No 53
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.58 E-value=0.006 Score=60.98 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=68.0
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (290)
+--++++++.+.|+..+-+.+.+.. |.+|++. .+. +.++..+. ...+.||+|+||.. |+ .+..|.
T Consensus 106 igps~~ai~~~~DK~~~r~~l~~~G-------Ip~~p~~~~~v~-~~~e~~~~--~~~igyPvvvKp~~--gg-gg~Gv~ 172 (467)
T PRK12833 106 VGPDAQTIRTMGDKARARRTARRAG-------VPTVPGSDGVVA-SLDAALEV--AARIGYPLMIKAAA--GG-GGRGIR 172 (467)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcCcCcC-CHHHHHHH--HHHhCCCEEEEECC--CC-CCCeEE
Confidence 4456789999999999999988653 4445443 332 22222222 23578999999955 44 468899
Q ss_pred EEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 180 LAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 180 lvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
++.+++.|.. -..++++|+||..+ .=+=|-|+||.
T Consensus 173 ~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~-~ei~v~v~~dg 220 (467)
T PRK12833 173 VAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA-RHIEVQILGDG 220 (467)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEeCC
Confidence 9999988753 14579999999863 55556667763
No 54
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.57 E-value=0.022 Score=62.75 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=68.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
++.++ -++++++...||..+-+.++++ .+.+|++..+++ .++..+. ...+.||+|+||....| +..
T Consensus 112 gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~igyPvVVKP~~g~g---G~G 178 (1068)
T PRK12815 112 GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAF--AEKIGFPIIVRPAYTLG---GTG 178 (1068)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHH--HHHcCCCEEEEECcCCC---CCc
Confidence 45444 5778999999999998888765 356788888852 2222122 23578999999975444 466
Q ss_pred EEEEecCCCCCC-----C----CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 178 LFLAYDRFSLSE-----L----EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 178 Malvf~~~gL~~-----l----~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.++.+++.|.. + ..++++||||+.. .=|=|=|++|
T Consensus 179 v~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~-~E~sv~v~rD 223 (1068)
T PRK12815 179 GGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW-KEIEYEVMRD 223 (1068)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-eEEEEEEEEc
Confidence 779999887742 1 2479999999753 2233445544
No 55
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.46 E-value=0.026 Score=60.11 Aligned_cols=129 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred CceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCC--
Q 022919 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (290)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 146 (290)
.+|+++-=+.+ ++ ..+|.+.+.. +++.+ -+..+....+|+..+-+.+++. .|.+|++..+....
T Consensus 526 ~~d~vf~~lhG~~ged--g~iq~~le~~-gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~ 595 (809)
T PRK14573 526 KVDVVLPILHGPFGED--GTMQGFLEII-GKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWK 595 (809)
T ss_pred cCCEEEEcCCCCCCCC--hHHHHHHHHc-CCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcc
Confidence 46776544433 32 3466666654 35544 3667788889999988888753 47789998885311
Q ss_pred CCchhHH--HhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 147 LSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 147 ~~~~~~l--~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
.+....+ ....+.||+|+||.- |.+ |..+.+|.+++.|.. .+.+++++|||. +|.=|=|.|+|+.
T Consensus 596 ~~~~~~~~~~~~~lg~P~iVKP~~--~Gs-S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 596 REPELCLAHIVEAFSFPMFVKTAH--LGS-SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred cChHHHHHHHHHhcCCCEEEeeCC--CCC-CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 1111111 124789999999955 332 578889999998752 356899999986 5677889999885
No 56
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=96.43 E-value=0.015 Score=58.29 Aligned_cols=142 Identities=13% Similarity=0.201 Sum_probs=85.0
Q ss_pred hhccc-hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHH
Q 022919 41 KSFLQ-PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSM 118 (290)
Q Consensus 41 ~~f~~-~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~ 118 (290)
.++.. ..+.++|++.|++.|--=- | .++... .+.+..+++ ++.++ -++++++.+.|+..+
T Consensus 57 ~~y~d~~~i~~~a~~~~~D~I~pg~-------g-------~lse~~---~~a~~~e~~-Gi~~igps~~~i~~~~DK~~~ 118 (472)
T PRK07178 57 AGYLNPRRLVNLAVETGCDALHPGY-------G-------FLSENA---ELAEICAER-GIKFIGPSAEVIRRMGDKTEA 118 (472)
T ss_pred hhhcCHHHHHHHHHHHCCCEEEeCC-------C-------CcccCH---HHHHHHHHc-CCCccCCCHHHHHHhcCHHHH
Confidence 44443 3578888887776543211 0 112211 133444444 45544 568999999999999
Q ss_pred HHHHhhcccCCCCCceecCceEE--EccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------
Q 022919 119 LQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------- 189 (290)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~------- 189 (290)
.+.+.+.. |.+|++.. ++ +.++..+. ...+.||+|+||.. |+ .+..|.++.+++.|..
T Consensus 119 r~~l~~~G-------Ip~pp~~~~~~~-~~~e~~~~--~~~igyPvvvKp~~--gg-Gg~Gv~~v~~~~eL~~a~~~~~~ 185 (472)
T PRK07178 119 RRAMIKAG-------VPVTPGSEGNLA-DLDEALAE--AERIGYPVMLKATS--GG-GGRGIRRCNSREELEQNFPRVIS 185 (472)
T ss_pred HHHHHHCC-------CCCCCCcCcCCC-CHHHHHHH--HHHcCCcEEEEeCC--CC-CCCCceEeCCHHHHHHHHHHHHH
Confidence 99988643 44444432 22 21111111 24678999999955 44 4688999999998853
Q ss_pred ------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 190 ------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 190 ------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
-..++++|+||.. +.=+=|-|+||
T Consensus 186 ~~~~~~~~~~v~iE~~i~~-~~eiev~v~~d 215 (472)
T PRK07178 186 EATKAFGSAEVFLEKCIVN-PKHIEVQILAD 215 (472)
T ss_pred HHHHhcCCCCEEEEEcCCC-CeEEEEEEEEE
Confidence 1357999999965 33344555543
No 57
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=96.26 E-value=0.005 Score=54.37 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=60.4
Q ss_pred cCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC--------CCCCCeeEEeeeecC--ee
Q 022919 136 VPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS--------ELEPPMLLQEFVNHG--GI 205 (290)
Q Consensus 136 ~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~--------~l~~P~V~QeFinH~--gv 205 (290)
+|..++-. +.+.+.+-+++.|= +|+||+.+.|..+-+++.- +...++ .-..|+++|+|+.-- |
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~~~---~VlKPl~g~gG~gV~~i~~--~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~G- 84 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEHGD---IVLKPLDGMGGRGVFRISR--DDPNLNSILETLTKNGERPVMVQPFLPEIKEG- 84 (173)
T ss_dssp S--EEEES--HHHHHHHHHHHSS---EEEEESS--TTTT-EEE-T--T-TTHHHHHHHHTTTTTS-EEEEE--GGGGG--
T ss_pred CcCEEEEC-CHHHHHHHHHHCCC---EEEEECCCCCCcCEEEEcC--CCCCHHHHHHHHHhcCCccEEEEeccccccCC-
Confidence 36666553 44445555555543 9999999999766555443 222222 234689999999853 3
Q ss_pred EEEEEEEcc-eEEEEEe-cCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce
Q 022919 206 LFKIYIIGE-TIKVVRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA 283 (290)
Q Consensus 206 l~KvYVvGd-~v~v~~R-~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~ 283 (290)
-.-+.+++. .++++.| |+-.++..+.. ..+.. ....+.+ -..++++.++..|++. ||-
T Consensus 85 DkRii~~nG~~~~av~R~P~~gd~R~N~~--~Gg~~------------~~~~lt~-----~e~~i~~~i~~~L~~~-Gl~ 144 (173)
T PF02955_consen 85 DKRIILFNGEPSHAVRRIPAKGDFRSNLA--AGGSA------------EPAELTE-----REREICEQIGPKLRED-GLL 144 (173)
T ss_dssp EEEEEEETTEE-SEEEEE--SS-S---GG--GTSCE------------EEEE--H-----HHHHHHHHHHHHHHHT-T--
T ss_pred CEEEEEECCEEhHHeecCCCCCCceeeec--cCCce------------eecCCCH-----HHHHHHHHHHHHHhhc-CcE
Confidence 445555554 4444444 33333333210 11110 1111110 0156888888888887 999
Q ss_pred eeeeecC
Q 022919 284 FGCLTLI 290 (290)
Q Consensus 284 LfGfDli 290 (290)
+-|+|+|
T Consensus 145 f~GiDvi 151 (173)
T PF02955_consen 145 FVGIDVI 151 (173)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9999986
No 58
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.24 E-value=0.012 Score=58.15 Aligned_cols=99 Identities=10% Similarity=0.197 Sum_probs=65.3
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (290)
+--++++++.+.|+..+.+.+.+.. |.+|++. .++ +.++..+.. ..+.||+|+||....| |..+.
T Consensus 103 ~g~~~~~~~~~~DK~~~r~~l~~~g-------ip~pp~~~~~~~-~~~e~~~~~--~~ig~PvvvKP~~g~g---s~Gv~ 169 (449)
T TIGR00514 103 IGPSAESIRLMGDKVSAIETMKKAG-------VPCVPGSDGLVE-DEEENVRIA--KRIGYPVIIKATAGGG---GRGMR 169 (449)
T ss_pred ECcCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCcC-CHHHHHHHH--HHhCCCEEEEeCCCCC---CCccE
Confidence 3467899999999999999988643 4455443 222 222221222 3578999999966544 57888
Q ss_pred EEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 180 LAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 180 lvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
++.+++.|... ..++++||||.. +.-|=|-|++|
T Consensus 170 ~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 170 VVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred EECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 99999877421 357999999964 33344545543
No 59
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=95.96 E-value=0.021 Score=57.87 Aligned_cols=103 Identities=12% Similarity=0.228 Sum_probs=69.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE--EccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+-+.+++.. |.+|++.. ++ +.++..+. ...+.||+|+||.... .+
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~G-------Vpv~p~~~~~v~-~~~e~~~~--a~~igyPvvIKp~~Gg---GG 165 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKAG-------VPVLPGTEEGIE-DIEEAKEI--AEEIGYPVIIKASAGG---GG 165 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHcC-------cCCCCCcCcCCC-CHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 46555 46899999999999999988643 44444432 22 22222222 2357899999995544 46
Q ss_pred eeEEEEecCCCCCC------------C-CCCeeEEeeeecCeeEEEEEEEcce
Q 022919 176 HELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 176 H~Malvf~~~gL~~------------l-~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
..|.++.+++.|.. . ..++++|+||.. +.-+-|-|+||.
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 89999999998742 1 357999999975 444777777664
No 60
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=95.90 E-value=0.019 Score=63.71 Aligned_cols=104 Identities=9% Similarity=0.178 Sum_probs=69.4
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE-EccCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~-i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (290)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++.. .-.+.++..+.. ..+.||+|+||. +|. .+.
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~G-------VPvpp~t~~~v~~~eea~~~a--e~iGyPvIVKP~--~GG-GGr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKAG-------VPVVPGTDGPPETMEEVLDFA--AAIGYPVIIKAS--WGG-GGR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccCcCCHHHHHHHH--HHcCCCEEEEEC--CCC-CCC
Confidence 45444 55889999999999988887643 44555431 111222222222 357899999994 454 468
Q ss_pred eEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcce
Q 022919 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 177 ~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
.|.+|.+++.|... ..++++|+||.. +.=+-|-|+||.
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~ 217 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDK 217 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeC
Confidence 89999998877421 357999999964 455778888775
No 61
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=95.89 E-value=0.067 Score=53.15 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=83.6
Q ss_pred cchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChh-HHhhhccHHHHHHHH
Q 022919 44 LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDV 122 (290)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~-~i~~l~dR~~~l~~l 122 (290)
....+.++|++.++++|-+..+.| ..+-+-+..++. .+.++-|-. +.+...||..+-+.+
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~------------------l~~glad~~~~~-Gip~~Gp~~~aa~le~dK~~~K~~l 116 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDP------------------LVAGFADWAAEL-GIPCFGPDSYCAQVEGSKHFAKSLM 116 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchH------------------HHHHHHHHHHHc-CCCcCCCHHHHHHHHcCHHHHHHHH
Confidence 334566777777777766544333 222233333332 455665543 556667888888888
Q ss_pred hhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC----C--------
Q 022919 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L-------- 190 (290)
Q Consensus 123 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l-------- 190 (290)
.+. .|.+|+|..++ +.++..+.+ ..+.||+|+||.- .+.+..+.++.+.+.+.+ +
T Consensus 117 ~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp~~---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~ 183 (426)
T PRK13789 117 KEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKADG---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQ 183 (426)
T ss_pred HHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEeCC---CCCCCcEEEECCHHHHHHHHHHHHhhccccC
Confidence 754 46678887774 222222222 2468999999953 345688999999886531 1
Q ss_pred -CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 191 -EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 191 -~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
...+++|||+.- .=|=|.+++|
T Consensus 184 ~~~~vlIEEfl~G--~E~Sv~~~~d 206 (426)
T PRK13789 184 SGNQVVIEEFMEG--QEASIFAISD 206 (426)
T ss_pred CCCeEEEEECcCC--eEEEEEEEEC
Confidence 136999999973 5555555544
No 62
>PLN02257 phosphoribosylamine--glycine ligase
Probab=95.83 E-value=0.08 Score=52.81 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=81.6
Q ss_pred hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022919 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (290)
+.+.++|++.++++|-+..+.|+ ...+.++.+++ .+.++ -+.++++...||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 34777777777777666544432 22343344443 45555 556788888999999888875
Q ss_pred cccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------------CC
Q 022919 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------------LE 191 (290)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------------l~ 191 (290)
. .|.+|++..+++ .++..+.+ ..+.||+|+||.- | ..+..+.++.+.+.+.+ ..
T Consensus 113 ~-------GIptp~~~~~~~-~~e~~~~~--~~~g~PvVVKp~~--~-~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFTD-PAAAKKYI--KEQGAPIVVKADG--L-AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEcCC--C-CCCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 4 466788887742 22222222 3578999999963 3 35678999999886531 13
Q ss_pred CCeeEEeeeec
Q 022919 192 PPMLLQEFVNH 202 (290)
Q Consensus 192 ~P~V~QeFinH 202 (290)
.++++||||.-
T Consensus 180 ~~vlIEefi~G 190 (434)
T PLN02257 180 SEVVVEEFLDG 190 (434)
T ss_pred CeEEEEECCCC
Confidence 57999999973
No 63
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.73 E-value=0.091 Score=52.36 Aligned_cols=141 Identities=9% Similarity=0.113 Sum_probs=81.9
Q ss_pred hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022919 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (290)
+.+.++|++.++++|-.-.+.+|. .....++.+. .+.++ .+.++++...|+.-|.+.+.+
T Consensus 55 e~l~~~~~~~~id~Vi~~~d~~l~-----------------~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l~~ 115 (435)
T PRK06395 55 DLIEDFALKNNVDIVFVGPDPVLA-----------------TPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLMER 115 (435)
T ss_pred HHHHHHHHHhCCCEEEECCChHHH-----------------HHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHHHH
Confidence 346667777776665544333321 1122233333 46665 778899999999999998875
Q ss_pred cccCCCCCceecC-ceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecC-CCCC----------CCCC
Q 022919 125 LNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSLS----------ELEP 192 (290)
Q Consensus 125 l~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~-~gL~----------~l~~ 192 (290)
. .|.+| .|....++ ++..... ..+.||+|+||.-..| |-.|.++.+. +.+. +-..
T Consensus 116 ~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~sg---gkGV~v~~~~~~~~~ea~~~~~~~~~~~~ 182 (435)
T PRK06395 116 H-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLTG---GKGVKVTGEQLNSVDEAIRYAIEILDRDG 182 (435)
T ss_pred C-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCCC---CCCeEEecCchhhHHHHHHHHHHHhCCCC
Confidence 3 35565 44344222 1121221 2458999999965554 4567787643 1221 2235
Q ss_pred CeeEEeeeecCeeEEEEEEEcceEEE
Q 022919 193 PMLLQEFVNHGGILFKIYIIGETIKV 218 (290)
Q Consensus 193 P~V~QeFinH~gvl~KvYVvGd~v~v 218 (290)
++|+|||+.---+=.=+|+=|+.+++
T Consensus 183 ~viIEEfl~G~E~Svd~~~dg~~~~~ 208 (435)
T PRK06395 183 VVLIEKKMTGEEFSLQAFSDGKHLSF 208 (435)
T ss_pred cEEEEeecCCceEEEEEEEcCCeEEE
Confidence 79999999643444445566777644
No 64
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.73 E-value=0.036 Score=55.71 Aligned_cols=103 Identities=9% Similarity=0.136 Sum_probs=67.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCc-eEEEc-cCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~-~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+.+.+.+.. |.+|+ +..+. .+.+++.+. ...+.||+|+||.... .+
T Consensus 98 Gi~~iGps~~~i~~~~DK~~~k~~l~~~g-------Ipvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~~gg---Gg 165 (478)
T PRK08463 98 GIIFIGPKSEVIRKMGNKNIARYLMKKNG-------IPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKASGGG---GG 165 (478)
T ss_pred CCceecCCHHHHHhhCcHHHHHHHHHHcC-------CCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 45555 55899999999999999988653 44444 33221 121112122 2367899999995543 46
Q ss_pred eeEEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..|.++.+++.|.. -+.++++|+||..+ .-+-+-|+||
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~-~~iev~v~~d 216 (478)
T PRK08463 166 RGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP-RHIEFQILGD 216 (478)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-eEEEEEEEEc
Confidence 78999999998743 13579999999753 3234445655
No 65
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.52 E-value=0.015 Score=64.62 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=66.9
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+.+.+.+.. |.+|+.. .+. +.+++.+. ...+.||+|+||.... .+
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~G-------VPv~P~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~Gg---GG 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKAG-------VPVIPGSEGPID-DIEEALEF--AEEIGYPIMLKASAGG---GG 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCC---CC
Confidence 45444 56889999999999999988643 3343332 222 22222222 2367899999995544 46
Q ss_pred eeEEEEecCCCCCC------------C-CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~------------l-~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.|.+|.+++.|.. . ..++++|+||.. +.-+=|-|+||
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D 220 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGD 220 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEE
Confidence 88999999988742 1 357999999974 33355656654
No 66
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=94.69 E-value=0.42 Score=46.34 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=75.4
Q ss_pred eEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHH
Q 022919 75 DVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF 154 (290)
Q Consensus 75 DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~ 154 (290)
|+|+-..+.+...+.-++|.+.-=.+.+-...+.++.+.|...+++.+++. .+.+|.+..+++ .+++...
T Consensus 68 dv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-------~ipvp~~~~v~t-~~el~~a-- 137 (329)
T PF15632_consen 68 DVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEAN-------GIPVPPYWRVRT-ADELKAA-- 137 (329)
T ss_pred eEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhC-------CCCCCCEEEeCC-HHHHHHH--
Confidence 444444444444555667776654555545689999999999999999852 457899998852 2222222
Q ss_pred hcCCccc---eEeeeccccCCCCceeEEEEe-cCCCCCC----------------------CCCCeeEEeeeecC
Q 022919 155 EAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSE----------------------LEPPMLLQEFVNHG 203 (290)
Q Consensus 155 ~agl~fP---~I~Kp~vA~Gs~~SH~Malvf-~~~gL~~----------------------l~~P~V~QeFinH~ 203 (290)
-+.+++| +.+||.+..|+. ..-++. +...+.. --+|+++|||..--
T Consensus 138 ~~~l~~~~~~~CvKP~~g~gg~---GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 138 YEELRFPGQPLCVKPAVGIGGR---GFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred HHhcCCCCceEEEecccCCCcc---eEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCC
Confidence 2356666 999998888763 455555 3333321 23689999999755
No 67
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.37 E-value=0.81 Score=44.07 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=128.7
Q ss_pred HHHHhhccceEEEEecCCCCCCC---C-------CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCChhHHhhhccHH
Q 022919 48 LEILARNKGISFVAIDQNRPLSD---Q-------GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~~---Q-------gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~ 116 (290)
+...-+..|.+..++|.+....- + ..+|+++-.+.+.. -...+|.|.+.+-=-.|.=|+.+-.--+|..
T Consensus 26 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~ 105 (317)
T COG1181 26 VLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKI 105 (317)
T ss_pred HHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHH
Confidence 33344447888888888773321 1 46777665554431 1234667776654345556665555556655
Q ss_pred HHHHHHhhcccCCCCCceecCceEEEccCC-CCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC------
Q 022919 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------ 189 (290)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~------ 189 (290)
.+-..... ..+.++.++.+..+. .+..-.-...++.||++|||-- -|| |=.+..+.+.+.+..
T Consensus 106 ~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~-~gS--Svg~~~v~~~~d~~~~~e~a~ 175 (317)
T COG1181 106 VTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR-EGS--SVGRSPVNVEGDLQSALELAF 175 (317)
T ss_pred HHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCC-ccc--eeeEEEeeeccchHHHHHHHH
Confidence 44333332 245567777775432 3333333457999999999944 343 567888999888863
Q ss_pred -CCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--H
Q 022919 190 -LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--L 266 (290)
Q Consensus 190 -l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~ 266 (290)
.+...++++|++ |.=+.|=++|+......- ++--+.. +...++.+.. +...+.. +..+. .+..++ .
T Consensus 176 ~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l-~~~eI~~----~~~~fydye~-Ky~~~gg--~~~~~-pa~lt~~~~ 244 (317)
T COG1181 176 KYDRDVLREQGIT--GREIEVGVLGNDYEEQAL-PLGEIPP----KGEEFYDYEA-KYLSTGG--AQYDI-PAGLTDEIH 244 (317)
T ss_pred HhCCceeeccCCC--cceEEEEecCCcccceec-CceEEec----CCCeEEeeec-cccCCCC--ceeeC-CCCCCHHHH
Confidence 356799999999 888999999996622111 1111110 1112332222 1111110 01000 001111 5
Q ss_pred HHHHHHHHHHHHHhC-ceeeeeecC
Q 022919 267 PALCWKGLQGNSAIG-WAFGCLTLI 290 (290)
Q Consensus 267 ~~v~~iA~~LR~~LG-L~LfGfDli 290 (290)
+.++++|.+.-++|| +.+.|+|+|
T Consensus 245 ~~i~~lA~~a~~alg~~g~~rvDf~ 269 (317)
T COG1181 245 EEIKELALRAYKALGCLGLARVDFF 269 (317)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 689999999999999 999999985
No 68
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.41 Score=47.12 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=93.5
Q ss_pred HhhccceEEEEecCCCCCCC-CCCceEEEecccchH------------------HHHHHHHHHHhCCCeEEeCChhHHhh
Q 022919 51 LARNKGISFVAIDQNRPLSD-QGPFDVVLHKLSGME------------------WCKIIEDYRQKHPEVTILDPPDAIKH 111 (290)
Q Consensus 51 ~~~~~gi~~v~lD~~~pl~~-Qgp~DvILHKltd~~------------------~~~~l~~y~~~hP~v~ViDP~~~i~~ 111 (290)
-++..|+.++.+|++.+=.. |--=++|....+|.+ |-...-++..++ +.|-=++++++.
T Consensus 19 aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~ 96 (375)
T COG0026 19 AAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRI 96 (375)
T ss_pred HHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHH
Confidence 45668999999998764333 322344444444331 112222344443 666778999999
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC--
Q 022919 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-- 189 (290)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-- 189 (290)
..||...=+.|.++ .+.+|.|..++ +.+++...+..- .||.|.|. ..|-=+-+.=.+|.+++++..
T Consensus 97 ~qdR~~eK~~l~~~-------Gi~va~~~~v~-~~~el~~~~~~~--g~p~VlKt--r~gGYDGkGQ~~i~~~~~~~~~~ 164 (375)
T COG0026 97 AQDRLVEKQFLDKA-------GLPVAPFQVVD-SAEELDAAAADL--GFPAVLKT--RRGGYDGKGQWRIRSDADLELRA 164 (375)
T ss_pred HhhHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHHHHc--CCceEEEe--ccccccCCCeEEeeCcccchhhH
Confidence 99999888888754 46789999996 333455555544 49999999 446666788889998887763
Q ss_pred -----CCCCeeEEeeeecCee
Q 022919 190 -----LEPPMLLQEFVNHGGI 205 (290)
Q Consensus 190 -----l~~P~V~QeFinH~gv 205 (290)
...| |+-+||+=..-
T Consensus 165 ~~~~~~~~~-vlE~fV~F~~E 184 (375)
T COG0026 165 AGLAEGGVP-VLEEFVPFERE 184 (375)
T ss_pred hhhhccCce-eEEeecccceE
Confidence 1334 99999987643
No 69
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=93.77 E-value=0.16 Score=56.80 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=65.2
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceec-CceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~-P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal 180 (290)
+--++++++.+.|+..+-+.+.+.. |.+ |.+..++ +.++..+. ...+.||+|+||.... .+..|.+
T Consensus 102 iGps~ea~~~~~DK~~ar~ll~~~G-------VPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~gg---GG~GV~i 168 (1201)
T TIGR02712 102 VGPTPEQIRKFGLKHTARELAEAAG-------VPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGG---GGIGMQK 168 (1201)
T ss_pred ECCCHHHHHHhcCHHHHHHHHHHCC-------CCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCC---CCCCEEE
Confidence 3456899999999998888887543 444 3344443 22222121 2467899999996544 4678999
Q ss_pred EecCCCCCC----C---------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 181 AYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 181 vf~~~gL~~----l---------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.+++.|.. + ..++++||||..+ .=+=|.|+||
T Consensus 169 v~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~-~eveV~v~~D 214 (1201)
T TIGR02712 169 CDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA-RHVEVQIFGD 214 (1201)
T ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEEC
Confidence 999988741 1 3469999999853 4455555554
No 70
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=93.71 E-value=2.1 Score=43.51 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=77.5
Q ss_pred HHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhc
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADL 125 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l 125 (290)
.+.+.|++.++++|-+..+.| ....+.+..++. .+.++ -+.++++...|+..|-+.+.+.
T Consensus 60 ~l~~~a~~~~id~Vi~g~E~~------------------l~~glad~l~~~-Gi~v~Gps~~aa~le~dK~~~K~~l~~~ 120 (486)
T PRK05784 60 EVKKVAKEVNPDLVVIGPEEP------------------LFAGVADVLREE-GFPVFGASSKCARIEKSKVWARELMWKY 120 (486)
T ss_pred HHHHHHHHhCCCEEEECCchH------------------HHHHHHHHHHhC-CCCEECCcHHHHHHhcCHHHHHHHHHHc
Confidence 477777777777666533222 222233333333 45444 5667778888888777777753
Q ss_pred ccCCCCCceecC-ceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCC-----------------
Q 022919 126 NLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL----------------- 187 (290)
Q Consensus 126 ~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL----------------- 187 (290)
.|.+| ++..++ +.++..+.+ + ..+|+|+||.-.. .|..|.++.+.+.+
T Consensus 121 -------gIpt~~~~~~~~-~~~ea~~~~-~--~~~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~ 186 (486)
T PRK05784 121 -------SIPGRLRYKVFY-DVEEAAKFI-E--YGGSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVNDIK 186 (486)
T ss_pred -------CcCCCccceEeC-CHHHHHHHH-h--hcCCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHHHH
Confidence 35554 566664 222222222 1 2379999995543 46788999986521
Q ss_pred ---C---CCCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 188 ---S---ELEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 188 ---~---~l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
. +-..++|+|||+. |.=|=|.++.|
T Consensus 187 ~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 187 EGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 1 1135799999998 44455555543
No 71
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=92.93 E-value=0.7 Score=45.95 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=71.4
Q ss_pred eEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEE
Q 022919 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (290)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (290)
=+|.=++++|+.--||....+.+++++ +.+|..+.-. .++..+. ...+.||+|+||-..-|++ .-.
T Consensus 102 ~vvgs~~eaI~iaeDr~~fke~m~eig-------i~~P~~~~~~--~~e~~~~--~~~ig~PvIVrP~~~lGG~---G~~ 167 (400)
T COG0458 102 EVVGSDPEAIEIAEDKKLFKEAMREIG-------IPVPSRIAHS--VEEADEI--ADEIGYPVIVKPSFGLGGS---GGG 167 (400)
T ss_pred EEEecCHHHhhhhhhHHHHHHHHHHcC-------CCCCcccccc--HHHHhhh--HhhcCCCEEEecCcCCCCC---cee
Confidence 456789999999999999999999764 4566332111 1111122 2356799999997766654 457
Q ss_pred EEecCCCCCC--------C-CCCeeEEeeeecCeeEEEEEEEcc-eEEEEEecCCCCCchhh
Q 022919 180 LAYDRFSLSE--------L-EPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSLPNVSKRE 231 (290)
Q Consensus 180 lvf~~~gL~~--------l-~~P~V~QeFinH~gvl~KvYVvGd-~v~v~~R~Slpn~~~~~ 231 (290)
+++|++.|.. . -.+|+++|+|- |...|..=|+-| +..|..--++-|+.+..
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~g 228 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPMG 228 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCcccccc
Confidence 8899876642 2 13577777765 444454444433 23344445556655543
No 72
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=91.15 E-value=0.5 Score=46.25 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=53.8
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malv 181 (290)
+.=..++++...||..+-+.+++. .|.+|+++ + +. ..+.||+|+||..+. .+....++
T Consensus 111 ~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~g~---ggkGv~i~ 168 (358)
T PRK13278 111 MFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPGAK---GGRGYFIA 168 (358)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCCCC---CCCCeEEe
Confidence 334556677777888777777643 46667763 2 11 135699999995444 46778899
Q ss_pred ecCCCCCC----C--------CCCeeEEeeeecC
Q 022919 182 YDRFSLSE----L--------EPPMLLQEFVNHG 203 (290)
Q Consensus 182 f~~~gL~~----l--------~~P~V~QeFinH~ 203 (290)
.+++.+.+ + ...+++||||..-
T Consensus 169 ~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 169 KSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred CCHHHHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 99886531 1 4679999999744
No 73
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=89.51 E-value=0.6 Score=45.95 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=42.4
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCccceEeeeccccC--CCCceeEEEEecCCCCCC----CC----------CCeeE
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG--SAKSHELFLAYDRFSLSE----LE----------PPMLL 196 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G--s~~SH~Malvf~~~gL~~----l~----------~P~V~ 196 (290)
.|.+|+.+. +. ..+.+|+|+||..|.| +.. ..++.+.+.|.. +. ..+++
T Consensus 138 GI~~Pk~~~---~p---------~eId~PVIVKp~~asG~~srG---~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 138 GIPYPKLFK---DP---------EEIDRPVIVKLPEAKRRLERG---FFTASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CCCCceeec---Cc---------cccCccEEEEECCCCCccccC---eEeeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 577788775 11 3679999999999998 654 447778776531 11 34689
Q ss_pred EeeeecCeeEEEEEEE
Q 022919 197 QEFVNHGGILFKIYII 212 (290)
Q Consensus 197 QeFinH~gvl~KvYVv 212 (290)
||||.---.=+=+|+-
T Consensus 203 QEyI~G~ey~~d~F~s 218 (366)
T PRK13277 203 EEYVIGAHFNFNYFYS 218 (366)
T ss_pred EeccCCCEEEEEEEEe
Confidence 9999743333334443
No 74
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=88.18 E-value=1.1 Score=45.17 Aligned_cols=121 Identities=15% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCeEEeCChh-HHhhhccHHHHHHHHhhcccCCCCCceecCceE-EEccCCCCchhHHHhcCCccceEee
Q 022919 88 KIIEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAK 165 (290)
Q Consensus 88 ~~l~~y~~~hP~v~ViDP~~-~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v-~i~~~~~~~~~~l~~agl~fP~I~K 165 (290)
..+.+-.+++ .+..+=|.. +++.+-|..+|-+.+++... .+|+.. -.-.+.++.....++.| ||+|+|
T Consensus 89 ~~fae~~~~~-gl~fiGP~~~~i~~mgdK~~ar~~~~~aGV-------P~vpgs~~~~~~~ee~~~~a~~iG--yPVivK 158 (449)
T COG0439 89 AAFAEACAEA-GLTFIGPSAEAIRRMGDKITARRLMAKAGV-------PVVPGSDGAVADNEEALAIAEEIG--YPVIVK 158 (449)
T ss_pred HHHHHHHHHc-CCeeeCcCHHHHHHhhhHHHHHHHHHHcCC-------CcCCCCCCCcCCHHHHHHHHHHcC--CCEEEE
Confidence 3455555555 388888754 55555588888888875322 222222 00012223344555566 999999
Q ss_pred eccccCCCCceeEEEEecCCCCCC------------CCCC-eeEEeeeecCeeEEEEEEEcceE----EEEEec
Q 022919 166 PLVVDGSAKSHELFLAYDRFSLSE------------LEPP-MLLQEFVNHGGILFKIYIIGETI----KVVRRF 222 (290)
Q Consensus 166 p~vA~Gs~~SH~Malvf~~~gL~~------------l~~P-~V~QeFinH~gvl~KvYVvGd~v----~v~~R~ 222 (290)
|...-| +-.|-+|.+.+.|.+ ...| +.+++||+.- .=.=|-|+||.. +..+|-
T Consensus 159 a~~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i~l~eRd 228 (449)
T COG0439 159 AAAGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVIHLGERD 228 (449)
T ss_pred ECCCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEEEEEecc
Confidence 955444 577999999998852 2345 9999999876 223345677654 445554
No 75
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=86.88 E-value=0.53 Score=45.55 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=45.9
Q ss_pred HHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCC-CCceeE-EEEecCC
Q 022919 108 AIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS-AKSHEL-FLAYDRF 185 (290)
Q Consensus 108 ~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs-~~SH~M-alvf~~~ 185 (290)
..+.|.+.-.+|+.-.++ .+..|+-+.+++..+ . .-..|+||+|.||=..-|. ..+.+= ..+-+.+
T Consensus 108 ~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d----~-~~~el~FPvILKP~mgg~~~~~araKa~~a~d~e 175 (415)
T COG3919 108 LLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID----T-LVDELTFPVILKPGMGGSVHFEARAKAFTAADNE 175 (415)
T ss_pred HHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh----h-hhhheeeeEEecCCCCCcceeehhhheeeccCHH
Confidence 344444444444444444 356788888863321 1 1347999999999554321 111111 1222222
Q ss_pred CCC----CC---CCC--eeEEeeeecCee
Q 022919 186 SLS----EL---EPP--MLLQEFVNHGGI 205 (290)
Q Consensus 186 gL~----~l---~~P--~V~QeFinH~gv 205 (290)
.++ .+ -.| +|+||||.-||-
T Consensus 176 e~k~a~~~a~eeigpDnvvvQe~IPGGgE 204 (415)
T COG3919 176 EMKLALHRAYEEIGPDNVVVQEFIPGGGE 204 (415)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCc
Confidence 222 11 133 999999999864
No 76
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=85.60 E-value=0.32 Score=42.81 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=42.9
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC----C-CCCeeEEeeeecCee
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L-EPPMLLQEFVNHGGI 205 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l-~~P~V~QeFinH~gv 205 (290)
.+.+|+|..+.+ .+++.+.+ ..+.||+|.|+.. |.-+-+.-.+|.+++.+.. + ..||++++||+...-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 477899999952 22232332 3579999999733 4445577779999998864 3 579999999998743
No 77
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=85.21 E-value=22 Score=35.11 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=94.1
Q ss_pred CCccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccch----------HH-HHHHHHH
Q 022919 25 QPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM----------EW-CKIIEDY 93 (290)
Q Consensus 25 ~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~----------~~-~~~l~~y 93 (290)
+.+.++||. +.+.+...|.+.|++...++.=.|..-++..+.++--.+.. +| .+.++++
T Consensus 11 ~~kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~ 80 (389)
T COG2232 11 SCKILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDL 80 (389)
T ss_pred cceEEEEee----------cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhh
Confidence 456777774 55668888999999999988888877677788887665553 34 2334444
Q ss_pred HHhCC--------------------CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHH
Q 022919 94 RQKHP--------------------EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV 153 (290)
Q Consensus 94 ~~~hP--------------------~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l 153 (290)
....= ++.=.+|-..+..+-||...++.+..+... .|..-. ++.+
T Consensus 81 ~~dvD~~ii~~sg~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp-------~p~~~~--------~e~~ 145 (389)
T COG2232 81 AEDVDAPIIPFSGFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMP-------EPSEKK--------IEPL 145 (389)
T ss_pred hhhcceeeeeccccccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCC-------CChhhh--------hhhh
Confidence 33220 111225555777778888888877765432 111111 1222
Q ss_pred HhcCCccceEeeeccccCCCCceeEEEEecCCCCCCCCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 154 FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 154 ~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
. --..++|.||+...|.. .-++--.+++. -+++++||||. |+=+-|-+|++
T Consensus 146 ~--~gekt~IlKPv~GaGG~----~el~~~~Ee~~--~~~~i~Qefi~--G~p~Svs~is~ 196 (389)
T COG2232 146 E--EGEKTLILKPVSGAGGL----VELVKFDEEDP--PPGFIFQEFIE--GRPVSVSFISN 196 (389)
T ss_pred h--hcceeeEEeeccCCCce----eeecccccccC--CcceehhhhcC--CceeEEEEEec
Confidence 2 23678999999877753 22222222222 37899999995 45555666654
No 78
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=84.59 E-value=11 Score=35.92 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=29.9
Q ss_pred eEeeeccccCCCCceeEEEEecCCCCCCCCCCeeEEeeeecC--eeEEEEEEEcceEEE
Q 022919 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG--GILFKIYIIGETIKV 218 (290)
Q Consensus 162 ~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l~~P~V~QeFinH~--gvl~KvYVvGd~v~v 218 (290)
.|.||.-+||... +-|. ++.+++ +++||||.-- +|. ..+|+++.+
T Consensus 141 ~ViKp~dgCgge~-----i~~~-~~~pd~---~i~qEfIeG~~lSVS---L~~GEkv~p 187 (307)
T COG1821 141 YVIKPADGCGGEG-----ILFG-RDFPDI---EIAQEFIEGEHLSVS---LSVGEKVLP 187 (307)
T ss_pred EEecccccCCcce-----eecc-CCCcch---hhHHHhcCCcceEEE---EecCCcccc
Confidence 6999999998743 2222 233333 9999999744 444 577887754
No 79
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=74.40 E-value=7.2 Score=35.24 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=36.7
Q ss_pred CCccceEeeeccccCCCCceeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 157 gl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
++.||+++||...-|. ..|.+++|++.|.+. ..||++.+|+. +..=+-|=|++|
T Consensus 36 ~iGyPVliKas~ggGG---~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D 102 (211)
T PF02786_consen 36 EIGYPVLIKASAGGGG---RGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRD 102 (211)
T ss_dssp HH-SSEEEEETTSSTT---TSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEE
T ss_pred hcCCceEEeecccccc---cccccccchhhhhhhhhhccccCccccccceEEEeeehh-hhhhhhhhhhhc
Confidence 5789999999665553 779999999988621 57899999998 444455555554
No 80
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=71.28 E-value=3.8 Score=38.02 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=27.2
Q ss_pred cceEeeeccccCCCCceeEEEEecCCCCCC----CCCCeeEEeeeec-----C-eeEEEEEEEc
Q 022919 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNH-----G-GILFKIYIIG 213 (290)
Q Consensus 160 fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l~~P~V~QeFinH-----~-gvl~KvYVvG 213 (290)
-.||+||-. |+ ....+.|+-+.+.+.+ ...+.|+|+||.. | -.-+.+||+=
T Consensus 66 ~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 66 NLWIVKPSN--GS-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp --EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred CEEEEeccc--cC-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 569999955 43 3467777777666664 5678999999974 3 4556677763
No 81
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=70.38 E-value=9.6 Score=37.36 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=79.1
Q ss_pred HhhccceEEEEecCCCCCCC-C-CCceEEEecccchHH--------------------HHHHHHHHHhCCCeEEeCChhH
Q 022919 51 LARNKGISFVAIDQNRPLSD-Q-GPFDVVLHKLSGMEW--------------------CKIIEDYRQKHPEVTILDPPDA 108 (290)
Q Consensus 51 ~~~~~gi~~v~lD~~~pl~~-Q-gp~DvILHKltd~~~--------------------~~~l~~y~~~hP~v~ViDP~~~ 108 (290)
-|...|++.+.+|-=..-.. | -....++.-+..+.. .+.|.++.+. ...||=.-.+
T Consensus 30 e~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VVP~ArA 107 (394)
T COG0027 30 EAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVVPNARA 107 (394)
T ss_pred HHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEccchHH
Confidence 35567999999996322111 1 122333333333322 2234444443 4457777788
Q ss_pred HhhhccHHHHHHHHhh-cccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCC
Q 022919 109 IKHLHNRQSMLQDVAD-LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (290)
Q Consensus 109 i~~l~dR~~~l~~l~~-l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL 187 (290)
.+.-+||..+-+.-.+ |.+. +-+|-..+ ..+++.+. -..+-||+++||+. |+.-|.=++|-+++.+
T Consensus 108 t~ltMnRegiRrlAAeeLglp-------Ts~Y~fa~-s~~e~~~a--~~~iGfPcvvKPvM---SSSGkGqsvv~~~e~v 174 (394)
T COG0027 108 TKLTMNREGIRRLAAEELGLP-------TSKYRFAD-SLEELRAA--VEKIGFPCVVKPVM---SSSGKGQSVVRSPEDV 174 (394)
T ss_pred HHhhhcHHHHHHHHHHHhCCC-------Cccccccc-cHHHHHHH--HHHcCCCeeccccc---ccCCCCceeecCHHHH
Confidence 8888999876554432 4322 22222221 11112222 24789999999988 3334888999999987
Q ss_pred CC-----------CCCCeeEEeeeecC
Q 022919 188 SE-----------LEPPMLLQEFVNHG 203 (290)
Q Consensus 188 ~~-----------l~~P~V~QeFinH~ 203 (290)
.. -..-+++-+||+-+
T Consensus 175 e~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 175 EKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred HHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 52 24558999999876
No 82
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=67.63 E-value=2.8 Score=40.91 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=46.9
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCc-cceEeeeccccC-CCCceeEEEEecCCCCCC-----CC--------------
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDG-SAKSHELFLAYDRFSLSE-----LE-------------- 191 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~Kp~vA~G-s~~SH~Malvf~~~gL~~-----l~-------------- 191 (290)
.|.+|++..+.+ .++..+.. ..+. ||+++||.+-.| ..++-...++.+++.+.+ +.
T Consensus 16 GIpvp~~~~~~~-~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~ 92 (386)
T TIGR01016 16 GIPVPRGYVATS-VEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQP 92 (386)
T ss_pred CCCCCCceeeCC-HHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCE
Confidence 578888888742 22222222 2356 999999975333 344457778877655421 11
Q ss_pred -CCeeEEeeeecCeeEEEEEEEcce
Q 022919 192 -PPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 192 -~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
..+++|+|++|+--+| |-+++|.
T Consensus 93 ~~~vlVEe~v~~g~E~~-v~i~~d~ 116 (386)
T TIGR01016 93 VNKILIEEATDIDKEYY-LSIVIDR 116 (386)
T ss_pred eeEEEEEECccCCceEE-EEEEEcC
Confidence 1489999998764332 4445553
No 83
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=60.65 E-value=7.3 Score=38.05 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=42.7
Q ss_pred ceecCceEEEccCCCCchhHHHhcCC-ccceEeeeccc-cCCCCceeEEEEecCCCCCC---------C--------CC-
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSE---------L--------EP- 192 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA-~Gs~~SH~Malvf~~~gL~~---------l--------~~- 192 (290)
.|.+|++.++.+ .++..+.. ..+ .||+++||..- -|.++++.+.+..+++.+.. + ..
T Consensus 16 gIpvp~~~~~~~-~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~ 92 (388)
T PRK00696 16 GVPVPRGIVATT-PEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQP 92 (388)
T ss_pred CCCCCCCeeeCC-HHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCE
Confidence 577888887752 22222222 246 89999999753 34567778888766554421 1 01
Q ss_pred --CeeEEeeeecCe
Q 022919 193 --PMLLQEFVNHGG 204 (290)
Q Consensus 193 --P~V~QeFinH~g 204 (290)
.+++|+|+.|+-
T Consensus 93 ~~gvlVe~~~~~~~ 106 (388)
T PRK00696 93 VNKVLVEEGADIAK 106 (388)
T ss_pred EeEEEEEeccCCCc
Confidence 289999998763
No 84
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=54.05 E-value=1.9e+02 Score=27.14 Aligned_cols=29 Identities=3% Similarity=-0.045 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHHh-Cceeeeeec
Q 022919 261 AGENSLPALCWKGLQGNSAI-GWAFGCLTL 289 (290)
Q Consensus 261 ~e~p~~~~v~~iA~~LR~~L-GL~LfGfDl 289 (290)
...|.-+.+.++|....+++ ++...|.|+
T Consensus 213 ~~IP~w~~~~~l~~~~~~~~p~~~~iGWDv 242 (285)
T PF14397_consen 213 FQIPNWDEILELAKEAHRKFPGLGYIGWDV 242 (285)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCeEEEEE
Confidence 46788888888888887655 899999997
No 85
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=52.29 E-value=1.9e+02 Score=26.53 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=42.9
Q ss_pred hcCCccceEeeeccccCCCCceeEEEEecCCCCC--------------------------CCCCCeeEEeeeecC-e---
Q 022919 155 EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS--------------------------ELEPPMLLQEFVNHG-G--- 204 (290)
Q Consensus 155 ~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~--------------------------~l~~P~V~QeFinH~-g--- 204 (290)
-..|.-++|.||--+||+ ..|+.+...+. .+++-+++-+|+... +
T Consensus 52 ~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~ 126 (239)
T PF14305_consen 52 FDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIP 126 (239)
T ss_pred hhcCCCCEEEEEecCCCc-----EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCc
Confidence 446778999999555552 23444333221 334568999999887 3
Q ss_pred eEEEEEEEcceEEEEEecCC
Q 022919 205 ILFKIYIIGETIKVVRRFSL 224 (290)
Q Consensus 205 vl~KvYVvGd~v~v~~R~Sl 224 (290)
.-||+||...++.+...-+=
T Consensus 127 ~DYKf~cF~G~~~~i~v~~~ 146 (239)
T PF14305_consen 127 RDYKFFCFNGKPKFIQVDSD 146 (239)
T ss_pred ceEEEEEECCEEEEEEEEeC
Confidence 58999999997666555443
No 86
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=48.12 E-value=52 Score=30.06 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=58.8
Q ss_pred CCccceEeeeccccCCCCceeEEEEecCCCCCCC-------CCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCC-CCc
Q 022919 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLP-NVS 228 (290)
Q Consensus 157 gl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l-------~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slp-n~~ 228 (290)
--+||+|+|-=-|||.- =++ .|-|+..+.++ +.=+.+-.||+ ....+-|=-||+.+.+..|.|+- |--
T Consensus 48 ~~~fPvVvKvG~~h~G~--GKv-kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~nWK 123 (203)
T PF02750_consen 48 APRFPVVVKVGHAHAGM--GKV-KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISGNWK 123 (203)
T ss_dssp -SSSSEEEEESS-STTT--TEE-EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSSTSS
T ss_pred CCCCCEEEEEccccCce--eEE-EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEcccccccc
Confidence 36899999986666543 344 66666665543 23356667773 35556666799999999999984 221
Q ss_pred hhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CceeeeeecC
Q 022919 229 KRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI-GWAFGCLTLI 290 (290)
Q Consensus 229 ~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L-GL~LfGfDli 290 (290)
.+ .|. +... +.+..+..+.=+....+.+ ||.+||+|.|
T Consensus 124 ~N-----~gs------------a~lE-------qi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai 162 (203)
T PF02750_consen 124 AN-----TGS------------AMLE-------QIAMTERYKLWVDECSELFGGLDICAVDAI 162 (203)
T ss_dssp TT-----SSS------------EEEE-------EE---HHHHHHHHHHGGGGG--SEEEEEEE
T ss_pred cc-----ccc------------hhee-------ecCCChHHHHHHHHHHHHcCCccEEEEEEE
Confidence 11 111 1111 1122334455566667778 9999999875
No 87
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=40.21 E-value=26 Score=34.10 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHhCCCeEEeCChhHHhhh--ccHHHHHHHH
Q 022919 82 SGMEWCKIIEDYRQKHPEVTILDPPDAIKHL--HNRQSMLQDV 122 (290)
Q Consensus 82 td~~~~~~l~~y~~~hP~v~ViDP~~~i~~l--~dR~~~l~~l 122 (290)
.|....+++-++.+..|+++|||||=-=..+ -+|++|+..+
T Consensus 169 gDv~~~~qll~~H~llpdlIIiDPPW~NKSVkRs~~Ysmlsnl 211 (366)
T KOG2356|consen 169 GDVKDIEQLLRAHDLLPDLIIIDPPWFNKSVKRSRTYSMLSNL 211 (366)
T ss_pred ccHHHHHHHhHHHhhcCCeEEeCCCCCCcccccccceecccch
Confidence 3445667777999999999999998433221 1234555444
No 88
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=38.86 E-value=42 Score=33.41 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=39.9
Q ss_pred EEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccch---HHHHHHHHHHHhCCCeEE
Q 022919 33 YALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM---EWCKIIEDYRQKHPEVTI 102 (290)
Q Consensus 33 y~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~---~~~~~l~~y~~~hP~v~V 102 (290)
..++....+.++...+.++.++.||+++++|++..+.+-+.-..= ..... -.-+.+++-.++||++++
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~--~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP--EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS---GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch--HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 344445567777777888889999999999999988764411100 11000 012346677789999876
No 89
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=38.16 E-value=2.7e+02 Score=25.74 Aligned_cols=174 Identities=11% Similarity=0.107 Sum_probs=97.9
Q ss_pred HHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCC
Q 022919 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (290)
Q Consensus 94 ~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~ 173 (290)
.++++.+.+..| ...|...+++.|..-. .-.=..|.-..+. +.+++.+-|..-+ =++.|| +.|+-
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP--~~Gs~ 67 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKP--DNGSK 67 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEe--CCCCC
Confidence 356678888887 5689999999987421 1112246665553 2233444444332 478999 55766
Q ss_pred CceeEEEEecCCCCC--------------------------CC-CCCeeEEeeee-----cCeeEEEEEEEcc------e
Q 022919 174 KSHELFLAYDRFSLS--------------------------EL-EPPMLLQEFVN-----HGGILFKIYIIGE------T 215 (290)
Q Consensus 174 ~SH~Malvf~~~gL~--------------------------~l-~~P~V~QeFin-----H~gvl~KvYVvGd------~ 215 (290)
.-+-|.|-....+.. .+ +-+.++|+.|+ ...+.|.|.|-=+ .
T Consensus 68 G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 68 GKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred CccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 666666665555431 01 23799999985 3478888888722 2
Q ss_pred EEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc--eeeeeec
Q 022919 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGW--AFGCLTL 289 (290)
Q Consensus 216 v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL--~LfGfDl 289 (290)
+-++.|-.-++--............+.++-... .....+ ..++ ..+...+|+.|-+.+|. -=+|+|+
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~--~~~~~~---~~~l--~~~a~~ia~~le~~~~~~~gElGiDl 216 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQS--EEAEKI---REEL--EDLALEIAQALEKHFGGHLGELGIDL 216 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhh--hhHHHH---HHHH--HHHHHHHHHHHHHhcCCceeEEEEEE
Confidence 335667666653222222222233333332111 000000 0011 35677888999999995 6789997
No 90
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=33.05 E-value=82 Score=28.25 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=38.8
Q ss_pred ccEEEEEEechhhhhhccchHHHHHhhccceEE----EEecCCCCCCCCCCceEEEec-ccchHHHHHHHHHH-HhCCCe
Q 022919 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISF----VAIDQNRPLSDQGPFDVVLHK-LSGMEWCKIIEDYR-QKHPEV 100 (290)
Q Consensus 27 ~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~----v~lD~~~pl~~Qgp~DvILHK-ltd~~~~~~l~~y~-~~hP~v 100 (290)
+...|-|+-.|-....+. +.+..++...|..- ..++ + . ...++...-=+ .....+.+.+.++. ...|++
T Consensus 40 ~~~~Vlyi~~Ed~~~~i~-~Rl~~i~~~~~~~~~~~rl~~~-~--g-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l 114 (239)
T cd01125 40 EPGRVVYLSAEDPREEIH-RRLEAILQHLEPDDAGDRLFID-S--G-RIQPISIAREGRIIVVPEFERIIEQLLIRRIDL 114 (239)
T ss_pred CCceEEEEECCCCHHHHH-HHHHHHHhhcCCcCcccceEEe-c--c-CCCceecccCCcccccHHHHHHHHHHHhcCCCE
Confidence 567788888887655444 34555555443210 0011 0 0 01122211100 11223444444443 568999
Q ss_pred EEeCChhHH
Q 022919 101 TILDPPDAI 109 (290)
Q Consensus 101 ~ViDP~~~i 109 (290)
+||||+.++
T Consensus 115 vviDpl~~~ 123 (239)
T cd01125 115 VVIDPLVSF 123 (239)
T ss_pred EEECChHHh
Confidence 999999876
No 91
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.96 E-value=80 Score=27.63 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=43.2
Q ss_pred EEEEechhhhh--hccchHHHHHhhccceEEEEe-cCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChh
Q 022919 31 VGYALTSKKKK--SFLQPKLEILARNKGISFVAI-DQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD 107 (290)
Q Consensus 31 VGy~l~~kK~~--~f~~~~l~~~~~~~gi~~v~l-D~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~ 107 (290)
||+.++...-. .-.+.++...|++.|+++.-+ |-.. +.....+.+++.++++|+.+++-|.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---------------d~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQN---------------DPEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTT---------------THHHHHHHHHHHHHTTESEEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCC---------------CHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45555555433 222346888899999998886 3322 23456778999999999999988876
Q ss_pred H
Q 022919 108 A 108 (290)
Q Consensus 108 ~ 108 (290)
.
T Consensus 66 ~ 66 (257)
T PF13407_consen 66 P 66 (257)
T ss_dssp T
T ss_pred H
Confidence 5
No 92
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=31.84 E-value=44 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHh--CCCeEEeCChhHHhhh
Q 022919 85 EWCKIIEDYRQK--HPEVTILDPPDAIKHL 112 (290)
Q Consensus 85 ~~~~~l~~y~~~--hP~v~ViDP~~~i~~l 112 (290)
...+.+.++.++ .|+++||||+.++..-
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 345667777776 4899999999998875
No 93
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=30.88 E-value=72 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred eEEEecccchH-----HHHHHHHHHHhCCCeEEeCChh
Q 022919 75 DVVLHKLSGME-----WCKIIEDYRQKHPEVTILDPPD 107 (290)
Q Consensus 75 DvILHKltd~~-----~~~~l~~y~~~hP~v~ViDP~~ 107 (290)
-+|||-++|-+ +...|++..++..+++||+|..
T Consensus 4 ~~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 4 CAVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred EEEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 36899999854 5567999999999999999963
No 94
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.18 E-value=1.7e+02 Score=23.61 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=43.9
Q ss_pred EEEEEEechhhhhhccchHHHHHhhccceEEEEecCCC----------CCCCC-CCceEEEecccchHHHHHHHHHHHhC
Q 022919 29 LVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNR----------PLSDQ-GPFDVVLHKLSGMEWCKIIEDYRQKH 97 (290)
Q Consensus 29 ~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~----------pl~~Q-gp~DvILHKltd~~~~~~l~~y~~~h 97 (290)
.+||.--.+.|.-......| .++|++.++++++. .+.+. ++.|+++-=+.-..+.+.+++-.+..
T Consensus 4 AVvGaS~~~~~~g~~v~~~l----~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 4 AVVGASDNPGKFGYRVLRNL----KAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp EEET--SSTTSHHHHHHHHH----HHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred EEEcccCCCCChHHHHHHHH----HhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 46666655555433333323 33999999999987 34433 68888888777777777788887777
Q ss_pred CCeEEeCCh
Q 022919 98 PEVTILDPP 106 (290)
Q Consensus 98 P~v~ViDP~ 106 (290)
...+++=|=
T Consensus 80 ~~~v~~~~g 88 (116)
T PF13380_consen 80 VKAVWLQPG 88 (116)
T ss_dssp -SEEEE-TT
T ss_pred CCEEEEEcc
Confidence 776666654
No 95
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=23 Score=36.36 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred cceEeeeccccCCCCceeEEEEecCCCCCCCCCCeeEEeee-------ecCeeEEEEEEEc
Q 022919 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFV-------NHGGILFKIYIIG 213 (290)
Q Consensus 160 fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l~~P~V~QeFi-------nH~gvl~KvYVvG 213 (290)
=|+||||.-. +.+-...++.+..-....+. .++|||| ||=-.++.||++=
T Consensus 227 rtfivkpDsg---aqg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~li 283 (565)
T KOG2158|consen 227 RTFIVKPDSG---AQGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSLI 283 (565)
T ss_pred ccEEECCCCC---CCCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeeee
Confidence 3999999653 33445677733332222222 7888887 5556777888773
No 96
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.03 E-value=1.7e+02 Score=23.38 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=46.4
Q ss_pred hccchHHHHHhhccceEEE--EecCCCCCCCCCCceEEEecccchHHHHHHHHHHH-hCCCeEEeCChhHHhhhccHHHH
Q 022919 42 SFLQPKLEILARNKGISFV--AIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ-KHPEVTILDPPDAIKHLHNRQSM 118 (290)
Q Consensus 42 ~f~~~~l~~~~~~~gi~~v--~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~-~hP~v~ViDP~~~i~~l~dR~~~ 118 (290)
++.-.++.++|+++|+++- ......--+....+|+||-=-.-.-..+.+++..+ .+-.|.+|||-+-....+|=...
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHH
Confidence 3444567788899998742 22222111123478999853222223445665554 45789999998776556776555
Q ss_pred HHH
Q 022919 119 LQD 121 (290)
Q Consensus 119 l~~ 121 (290)
++.
T Consensus 94 l~~ 96 (99)
T cd05565 94 LKF 96 (99)
T ss_pred HHH
Confidence 543
No 97
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=26.94 E-value=1.4e+02 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHHHh-CCCeEEeCChhHHhhhccHHHHHHHHh
Q 022919 86 WCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQSMLQDVA 123 (290)
Q Consensus 86 ~~~~l~~y~~~-hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (290)
..+.+.+.+++ .|+++|||++.+.....++..+.+.+.
T Consensus 108 ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 108 LLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 44555555554 889999999998876667665555544
No 98
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=44 Score=33.83 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=32.2
Q ss_pred EecCCCCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEE
Q 022919 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVR 220 (290)
Q Consensus 181 vf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~ 220 (290)
.|.+.|+....|||.+|.=|.-|+.|||.=--|+....++
T Consensus 256 ~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQ 295 (545)
T KOG0555|consen 256 HYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQ 295 (545)
T ss_pred HHHhcCceecCCCceEEEEecCcceEEeecccCchhhccc
Confidence 3455566788999999999999999999877777666554
No 99
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.92 E-value=2.1e+02 Score=26.06 Aligned_cols=61 Identities=5% Similarity=0.070 Sum_probs=35.4
Q ss_pred EEEEechhh----hhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCCh
Q 022919 31 VGYALTSKK----KKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP 106 (290)
Q Consensus 31 VGy~l~~kK----~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~ 106 (290)
||+.++-.. +....+.++.+.+++.|+++..++...+ ...|.+.++++.++-++++|.+..
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~---------------~~~~~~~i~~~~~~g~dlIi~~g~ 66 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPE---------------GADAERVLRELAAQGYDLIFGTSF 66 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCc---------------hHhHHHHHHHHHHcCCCEEEECch
Confidence 566665333 3334445677878888998887765422 234555555555555565555443
No 100
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=23.75 E-value=79 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=16.2
Q ss_pred eeeecC--eeEEEEEEEcceE
Q 022919 198 EFVNHG--GILFKIYIIGETI 216 (290)
Q Consensus 198 eFinH~--gvl~KvYVvGd~v 216 (290)
.|+||- |-||.|..+||.=
T Consensus 4 ~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp -EEEETTTEEEEEEEEECTTE
T ss_pred ccccCCccchheeeeeCCCcc
Confidence 599998 9999999999753
No 101
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=23.37 E-value=68 Score=27.50 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=12.9
Q ss_pred EEeeeecC-eeEEEEEEEc
Q 022919 196 LQEFVNHG-GILFKIYIIG 213 (290)
Q Consensus 196 ~QeFinH~-gvl~KvYVvG 213 (290)
-=.|+|++ ..+||||+=-
T Consensus 105 sv~F~~~~G~~~fKvflgR 123 (141)
T PF06228_consen 105 SVQFFDADGEAMFKVFLGR 123 (141)
T ss_dssp EEEEEETTSSEEEEEEE-B
T ss_pred EEEEECCCCCEEEEEEeec
Confidence 34577776 8999999853
No 102
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.15 E-value=2.1e+02 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.518 Sum_probs=15.0
Q ss_pred HHHHhhccceEEEEecCCCC
Q 022919 48 LEILARNKGISFVAIDQNRP 67 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~p 67 (290)
+..+.++.|++.+.++.+.|
T Consensus 19 ~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 19 VAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred HHHHHHHCCCEEEEcCCCCC
Confidence 55667888999888876544
No 103
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=22.83 E-value=1.4e+02 Score=26.88 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=20.4
Q ss_pred HHHHHHHHHHh-CCCeEEeCChhHHhhh
Q 022919 86 WCKIIEDYRQK-HPEVTILDPPDAIKHL 112 (290)
Q Consensus 86 ~~~~l~~y~~~-hP~v~ViDP~~~i~~l 112 (290)
..+.++++... .|+++|||++..+...
T Consensus 128 i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 128 VLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 44556666655 4999999999998764
No 104
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=21.47 E-value=1.6e+02 Score=25.47 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHh-CCCeEEeCChhHHhh
Q 022919 87 CKIIEDYRQK-HPEVTILDPPDAIKH 111 (290)
Q Consensus 87 ~~~l~~y~~~-hP~v~ViDP~~~i~~ 111 (290)
.+.+.++.++ .|+++|||++.++..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 4445555554 699999999998743
No 105
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=21.45 E-value=38 Score=24.03 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCce
Q 022919 271 WKGLQGNSAIGWA 283 (290)
Q Consensus 271 ~iA~~LR~~LGL~ 283 (290)
.|+..||++|||.
T Consensus 4 ~lS~~LR~ALg~~ 16 (48)
T PF04046_consen 4 KLSDELREALGMQ 16 (48)
T ss_pred ccCHHHHHHcCCC
Confidence 4678999999985
No 106
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.88 E-value=84 Score=29.31 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=54.4
Q ss_pred CccEEEEEEechhhhhhccchH------HHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHH-hCC
Q 022919 26 PERLVVGYALTSKKKKSFLQPK------LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ-KHP 98 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~~~~------l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~-~hP 98 (290)
...++|-|.-++.=.+.|+.+. +.++--.--+.|+++|++--...-++-..+| +.+-++.+ ..-
T Consensus 54 ~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L---------~~l~~~~k~~~~ 124 (235)
T COG2874 54 MNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLL---------DLLLEFIKRWEK 124 (235)
T ss_pred hCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHH---------HHHHhhHHhhcC
Confidence 5688999999999888887652 2222223357788888773322222222222 22333333 456
Q ss_pred CeEEeCChhHHhhhccHHHHHHHHhh
Q 022919 99 EVTILDPPDAIKHLHNRQSMLQDVAD 124 (290)
Q Consensus 99 ~v~ViDP~~~i~~l~dR~~~l~~l~~ 124 (290)
+|++||.+.++-.--++...++.+..
T Consensus 125 dViIIDSls~~~~~~~~~~vl~fm~~ 150 (235)
T COG2874 125 DVIIIDSLSAFATYDSEDAVLNFMTF 150 (235)
T ss_pred CEEEEecccHHhhcccHHHHHHHHHH
Confidence 89999999988775556666666554
No 107
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=20.55 E-value=85 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=21.2
Q ss_pred cceEEEEecCCCCCCCCCCceEEEecc
Q 022919 55 KGISFVAIDQNRPLSDQGPFDVVLHKL 81 (290)
Q Consensus 55 ~gi~~v~lD~~~pl~~Qgp~DvILHKl 81 (290)
.++.++.-|-...+++++|||+|+==.
T Consensus 123 ~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 123 DNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp HSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred CceeEEEcchhhccccCCCcCEEEEee
Confidence 378999999999999999999998543
Done!