Query 022919
Match_columns 290
No_of_seqs 136 out of 169
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.2E-50 3.9E-55 385.9 26.8 262 26-290 16-294 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.9 4.1E-26 1.4E-30 209.9 22.2 252 24-290 7-282 (324)
3 3t7a_A Inositol pyrophosphate 99.4 2.8E-12 9.7E-17 120.6 17.5 236 23-290 2-275 (330)
4 1uc8_A LYSX, lysine biosynthes 99.2 4.2E-11 1.4E-15 106.2 11.9 206 47-290 15-239 (280)
5 3r5x_A D-alanine--D-alanine li 99.1 5.2E-10 1.8E-14 101.6 10.3 211 47-290 26-253 (307)
6 1i7n_A Synapsin II; synapse, p 99.0 1.1E-09 3.7E-14 102.8 11.7 178 73-290 68-264 (309)
7 1iow_A DD-ligase, DDLB, D-ALA\ 99.0 3.7E-09 1.3E-13 95.2 14.5 212 47-290 25-259 (306)
8 3se7_A VANA; alpha-beta struct 99.0 7.9E-10 2.7E-14 103.3 10.0 212 48-290 27-294 (346)
9 2p0a_A Synapsin-3, synapsin II 99.0 3.4E-09 1.2E-13 100.9 12.6 178 73-290 85-281 (344)
10 1pk8_A RAT synapsin I; ATP bin 98.9 2.9E-09 1E-13 103.8 10.7 178 73-290 180-376 (422)
11 4eg0_A D-alanine--D-alanine li 98.9 7.1E-09 2.4E-13 95.3 12.6 214 48-290 37-268 (317)
12 1gsa_A Glutathione synthetase; 98.7 6.3E-08 2.1E-12 87.0 10.5 153 47-218 23-220 (316)
13 3ln6_A Glutathione biosynthesi 98.6 1.3E-07 4.4E-12 98.1 10.7 149 47-227 432-593 (750)
14 3q2o_A Phosphoribosylaminoimid 98.6 5.4E-07 1.9E-11 85.0 13.6 221 29-290 15-263 (389)
15 3orq_A N5-carboxyaminoimidazol 98.5 6.6E-06 2.2E-10 77.7 17.8 205 47-290 26-259 (377)
16 2i87_A D-alanine-D-alanine lig 98.5 8.7E-07 3E-11 83.0 11.1 187 72-290 86-295 (364)
17 1ehi_A LMDDL2, D-alanine:D-lac 98.4 4.4E-06 1.5E-10 79.0 15.0 196 72-290 92-305 (377)
18 3k5i_A Phosphoribosyl-aminoimi 98.4 1.4E-06 4.8E-11 83.3 10.8 224 27-290 23-276 (403)
19 3ln7_A Glutathione biosynthesi 98.4 1.5E-06 5.3E-11 90.2 11.5 152 46-227 436-599 (757)
20 3e5n_A D-alanine-D-alanine lig 98.4 4.4E-06 1.5E-10 79.7 13.6 238 23-290 17-323 (386)
21 1e4e_A Vancomycin/teicoplanin 98.3 3.3E-06 1.1E-10 78.3 12.0 183 73-290 90-294 (343)
22 3tqt_A D-alanine--D-alanine li 98.3 5.6E-06 1.9E-10 78.7 13.3 193 73-290 98-305 (372)
23 3k3p_A D-alanine--D-alanine li 98.3 3.3E-06 1.1E-10 80.7 10.7 238 28-290 37-325 (383)
24 3ax6_A Phosphoribosylaminoimid 98.3 1E-05 3.5E-10 75.6 13.4 206 47-290 15-246 (380)
25 2fb9_A D-alanine:D-alanine lig 98.2 9.6E-06 3.3E-10 74.9 12.1 184 71-290 74-275 (322)
26 4ffl_A PYLC; amino acid, biosy 98.2 5.1E-05 1.8E-09 70.5 16.0 192 47-290 15-229 (363)
27 4fu0_A D-alanine--D-alanine li 98.2 1.4E-06 4.8E-11 81.8 5.2 192 73-290 97-301 (357)
28 3vot_A L-amino acid ligase, BL 98.1 9.6E-05 3.3E-09 70.2 17.6 156 48-218 20-219 (425)
29 3lwb_A D-alanine--D-alanine li 98.1 1.5E-05 5.3E-10 75.5 11.5 126 73-215 109-246 (373)
30 3i12_A D-alanine-D-alanine lig 98.1 4.4E-05 1.5E-09 71.8 14.4 186 72-290 97-304 (364)
31 2pvp_A D-alanine-D-alanine lig 98.1 0.00011 3.8E-09 69.5 17.0 188 73-290 107-310 (367)
32 3eth_A Phosphoribosylaminoimid 98.1 6.8E-05 2.3E-09 71.0 15.0 148 48-213 16-168 (355)
33 3aw8_A PURK, phosphoribosylami 98.1 1E-05 3.5E-10 75.4 8.8 156 101-290 83-248 (369)
34 4e4t_A Phosphoribosylaminoimid 98.0 1E-05 3.6E-10 77.8 7.3 208 46-290 48-288 (419)
35 1kjq_A GART 2, phosphoribosylg 98.0 5.4E-05 1.9E-09 70.6 11.8 208 47-290 25-268 (391)
36 2z04_A Phosphoribosylaminoimid 97.8 6.5E-05 2.2E-09 69.7 8.6 147 47-214 15-184 (365)
37 3df7_A Putative ATP-grAsp supe 97.7 0.00029 9.9E-09 64.8 11.8 163 72-290 68-235 (305)
38 4dim_A Phosphoribosylglycinami 97.7 3.4E-05 1.2E-09 72.4 5.4 210 47-290 21-265 (403)
39 2pn1_A Carbamoylphosphate synt 97.6 0.00019 6.5E-09 65.3 9.6 150 99-290 98-257 (331)
40 1a9x_A Carbamoyl phosphate syn 97.6 0.00036 1.2E-08 74.8 11.8 158 99-290 658-831 (1073)
41 2dwc_A PH0318, 433AA long hypo 97.5 0.00018 6.3E-09 68.4 8.1 150 47-213 33-217 (433)
42 1a9x_A Carbamoyl phosphate syn 97.5 0.00024 8.3E-09 76.1 9.7 210 48-290 33-287 (1073)
43 3mjf_A Phosphoribosylamine--gl 97.4 0.00049 1.7E-08 66.2 8.9 110 89-214 82-205 (431)
44 1vkz_A Phosphoribosylamine--gl 97.3 0.00041 1.4E-08 65.9 7.9 99 101-214 93-204 (412)
45 3vmm_A Alanine-anticapsin liga 97.3 0.0022 7.6E-08 62.7 13.1 88 103-203 128-234 (474)
46 2yw2_A Phosphoribosylamine--gl 97.3 0.00041 1.4E-08 65.7 7.3 104 99-217 86-205 (424)
47 2ip4_A PURD, phosphoribosylami 97.3 0.00042 1.4E-08 65.6 7.1 101 99-214 85-195 (417)
48 2xcl_A Phosphoribosylamine--gl 97.2 0.00029 9.8E-09 66.7 5.7 100 99-213 86-199 (422)
49 2yrx_A Phosphoribosylglycinami 97.2 0.00053 1.8E-08 65.8 6.6 99 99-212 107-219 (451)
50 2qk4_A Trifunctional purine bi 97.1 0.0007 2.4E-08 64.9 6.8 100 99-213 112-226 (452)
51 3lp8_A Phosphoribosylamine-gly 97.1 0.00095 3.2E-08 64.5 7.4 101 99-214 107-221 (442)
52 3ouz_A Biotin carboxylase; str 97.0 0.00059 2E-08 65.3 5.2 102 99-214 103-220 (446)
53 3glk_A Acetyl-COA carboxylase 97.0 0.0029 9.8E-08 63.1 10.1 165 93-290 143-349 (540)
54 2dzd_A Pyruvate carboxylase; b 96.7 0.0032 1.1E-07 60.3 8.1 102 99-214 104-221 (461)
55 3u9t_A MCC alpha, methylcroton 96.7 0.005 1.7E-07 63.0 9.5 158 99-290 125-303 (675)
56 2pbz_A Hypothetical protein; N 96.6 0.0019 6.5E-08 60.5 5.3 130 48-201 16-167 (320)
57 2w70_A Biotin carboxylase; lig 96.5 0.0023 7.9E-08 61.0 5.3 101 99-213 99-216 (449)
58 2r85_A PURP protein PF1517; AT 96.3 0.0026 9.1E-08 57.4 4.2 130 47-202 15-178 (334)
59 1ulz_A Pyruvate carboxylase N- 96.1 0.0021 7.1E-08 61.4 2.7 102 99-214 98-215 (451)
60 3jrx_A Acetyl-COA carboxylase 96.1 0.013 4.6E-07 59.1 8.6 111 92-214 158-304 (587)
61 2vpq_A Acetyl-COA carboxylase; 96.0 0.0039 1.3E-07 59.5 3.8 102 99-214 98-215 (451)
62 3n6r_A Propionyl-COA carboxyla 95.9 0.0095 3.2E-07 61.0 6.6 108 92-214 93-216 (681)
63 1w96_A ACC, acetyl-coenzyme A 95.9 0.0073 2.5E-07 59.8 5.2 100 104-214 163-294 (554)
64 3va7_A KLLA0E08119P; carboxyla 95.6 0.045 1.5E-06 59.8 10.5 102 99-214 128-244 (1236)
65 3hbl_A Pyruvate carboxylase; T 95.5 0.031 1.1E-06 60.6 8.5 102 99-214 102-219 (1150)
66 2qf7_A Pyruvate carboxylase pr 94.9 0.047 1.6E-06 59.2 8.0 102 99-214 118-235 (1165)
67 2cqy_A Propionyl-COA carboxyla 94.9 0.0025 8.5E-08 48.4 -1.5 65 133-203 20-99 (108)
68 1wr2_A Hypothetical protein PH 91.1 0.079 2.7E-06 46.5 1.9 93 112-215 19-130 (238)
69 2r7k_A 5-formaminoimidazole-4- 91.1 0.29 9.9E-06 46.2 5.9 132 48-201 32-203 (361)
70 2io8_A Bifunctional glutathion 79.3 23 0.00078 35.8 13.0 159 46-224 397-601 (619)
71 3ufx_B Succinyl-COA synthetase 78.7 0.75 2.6E-05 44.0 1.8 79 133-215 16-108 (397)
72 3tig_A TTL protein; ATP-grAsp, 74.7 1 3.5E-05 43.2 1.5 56 155-213 143-210 (380)
73 2nu8_B SCS-beta, succinyl-COA 69.5 1.5 5E-05 41.8 1.3 80 133-216 16-117 (388)
74 1sn9_A BBAT, tetrameric beta-B 68.5 2.8 9.4E-05 24.6 1.8 22 262-283 3-24 (26)
75 3s99_A Basic membrane lipoprot 53.8 20 0.00068 33.3 6.0 94 21-116 19-132 (356)
76 2fp4_B Succinyl-COA ligase [GD 53.4 5.4 0.00018 38.1 2.0 95 133-231 16-142 (395)
77 3l49_A ABC sugar (ribose) tran 36.3 95 0.0033 26.1 7.2 65 27-107 4-71 (291)
78 3gyb_A Transcriptional regulat 33.1 85 0.0029 26.3 6.3 74 26-106 3-88 (280)
79 3uug_A Multiple sugar-binding 31.4 1.3E+02 0.0044 25.9 7.3 66 27-107 2-69 (330)
80 3jwg_A HEN1, methyltransferase 31.1 94 0.0032 25.3 6.1 77 28-105 54-141 (219)
81 3ou2_A SAM-dependent methyltra 26.8 1.4E+02 0.0047 23.8 6.3 68 28-105 69-147 (218)
82 3dp7_A SAM-dependent methyltra 25.3 99 0.0034 28.0 5.6 49 56-106 230-289 (363)
83 3o1i_D Periplasmic protein TOR 25.0 1.3E+02 0.0043 25.4 6.0 69 25-107 2-73 (304)
84 3i53_A O-methyltransferase; CO 24.7 1.6E+02 0.0055 25.9 6.8 50 55-106 219-276 (332)
85 2l2q_A PTS system, cellobiose- 24.3 1.5E+02 0.005 22.4 5.7 80 43-124 19-101 (109)
86 3jy6_A Transcriptional regulat 24.3 1.4E+02 0.0048 24.9 6.1 42 25-66 4-47 (276)
87 3jwh_A HEN1; methyltransferase 23.8 1.5E+02 0.0052 24.0 6.1 77 28-105 54-141 (217)
88 1vbf_A 231AA long hypothetical 21.6 53 0.0018 27.1 2.8 48 28-80 93-141 (231)
89 2xko_C PIPX, global nitrogen r 21.0 48 0.0017 25.3 2.1 18 198-215 5-24 (89)
90 3l6u_A ABC-type sugar transpor 20.9 1.2E+02 0.004 25.5 4.9 66 26-106 6-73 (293)
91 3rot_A ABC sugar transporter, 20.3 1.3E+02 0.0043 25.6 5.0 67 27-106 2-70 (297)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.2e-50 Score=385.85 Aligned_cols=262 Identities=28% Similarity=0.465 Sum_probs=227.0
Q ss_pred CccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccc------------hHHHHHHHHH
Q 022919 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCKIIEDY 93 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd------------~~~~~~l~~y 93 (290)
+++++|||||++||+++|+++.|.+.++++|+++++||++.++.+|++||+||||+++ ..|.+.|++|
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~ 95 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEY 95 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999988 3688999999
Q ss_pred HHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccC-CCCchhHHHhcCCccceEeeeccccCC
Q 022919 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (290)
Q Consensus 94 ~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~-~~~~~~~l~~agl~fP~I~Kp~vA~Gs 172 (290)
...||.++||||+.+++++.||..|++.|.+.....+.+.|.+|+++++.+. .+++.+.+...++.||+|+||+.++||
T Consensus 96 ~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs 175 (346)
T 2q7d_A 96 IDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT 175 (346)
T ss_dssp HHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSST
T ss_pred HHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcc
Confidence 9999999999999999999999999999998644334567999999999643 355666777789999999999999999
Q ss_pred CCceeEEEEecCCCCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCC--ccCCCcC
Q 022919 173 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VSSAAAS 250 (290)
Q Consensus 173 ~~SH~Malvf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~--vS~~~s~ 250 (290)
+ ||.|++|++.++|..++.|+++||||||+|+.|||||||+++.++.|+|+||+..+.. ..+.+.|++ +++.+++
T Consensus 176 ~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~~--~~~~~~f~s~~~~~~g~~ 252 (346)
T 2q7d_A 176 N-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTS--DRESIFFNSHNVSKPESS 252 (346)
T ss_dssp T-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCC
T ss_pred e-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCcc--ccccccccceeeccCCcc
Confidence 8 9999999999999999999999999999999999999999999999999999876642 345777775 7777766
Q ss_pred CCcCCCCC--CCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 251 ADDADLDP--GIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 251 ~~~~~ld~--~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
+....++. ..+++|+.+.++++|..++++||+++||+|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii 294 (346)
T 2q7d_A 253 SVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDII 294 (346)
T ss_dssp CGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred ccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEE
Confidence 55544432 23467788999999999999999999999986
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.95 E-value=4.1e-26 Score=209.93 Aligned_cols=252 Identities=17% Similarity=0.257 Sum_probs=194.3
Q ss_pred CCCccEEEEEEechhhhhhccchHHHHHhhccceEE--EEecCCCCCCCCC-CceEEEecccch--HHHHHHHHHHHhCC
Q 022919 24 LQPERLVVGYALTSKKKKSFLQPKLEILARNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIEDYRQKHP 98 (290)
Q Consensus 24 ~~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~--v~lD~~~pl~~Qg-p~DvILHKltd~--~~~~~l~~y~~~hP 98 (290)
..++..+||+++.++++ ++ .+...++++|+++ +.+|.+.|+..++ ++|+|+|+++++ .+.+.++.+...++
T Consensus 7 ~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~ 82 (324)
T 1z2n_X 7 TTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHP 82 (324)
T ss_dssp ---CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCT
T ss_pred ccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCC
Confidence 33456799999998887 55 5667788999999 9999987888777 899999999886 57788899988888
Q ss_pred CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeE
Q 022919 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (290)
Q Consensus 99 ~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~M 178 (290)
.+.+++++++++...||..+.+.+++. .|.+|+++.++. .+++.+.+...|+.||+|+||..++|+..||.|
T Consensus 83 g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv 154 (324)
T 1z2n_X 83 KVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQM 154 (324)
T ss_dssp TSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEE
T ss_pred CCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceee
Confidence 999999999999999999999999863 367899998852 223333444557889999999998888788999
Q ss_pred EEEecCCCCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCc------------cC
Q 022919 179 FLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV------------SS 246 (290)
Q Consensus 179 alvf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~v------------S~ 246 (290)
.++.+++.|..+..|+++||||++.|.-++|||+|+.+..+.|++++|+..+... ....|+.. ++
T Consensus 155 ~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~p~~~~~k 231 (324)
T 1z2n_X 155 KIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIK---SVDFNNQHLEDILSWPEGVIDK 231 (324)
T ss_dssp EEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCC---EEEEETTBGGGGGGSCTTSSCH
T ss_pred EEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCcc---ceeeccccchhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999988665321 12233322 22
Q ss_pred CC----cCCCcC-CC--CCCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 247 AA----ASADDA-DL--DPGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 247 ~~----s~~~~~-~l--d~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
.. +..++. .+ .......++.+.+.++|..+.++||+.++|+|+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~ 282 (324)
T 1z2n_X 232 QDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFI 282 (324)
T ss_dssp HHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEE
Confidence 11 001110 00 1111122334689999999999999999999985
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.44 E-value=2.8e-12 Score=120.64 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=150.8
Q ss_pred CCCCccEEEEEEechhhhhhccchH-HHHHhhccceEEEEec----CCCCCCCCCCceEEEecccchHHHHHHHHHHHhC
Q 022919 23 VLQPERLVVGYALTSKKKKSFLQPK-LEILARNKGISFVAID----QNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (290)
Q Consensus 23 ~~~~~~~~VGy~l~~kK~~~f~~~~-l~~~~~~~gi~~v~lD----~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~h 97 (290)
+++.+..+||.|--+||-+|=--+. |-++.+..-++.+--. ++.|.++=--+|++|--.++-==-+...+|.+..
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr 81 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR 81 (330)
T ss_dssp ----CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh
Confidence 3556789999999999966544334 5555544455555332 3445555567788887776632123456666653
Q ss_pred CCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC-----C---chhHHH--hcCCccceEeeec
Q 022919 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-----S---IPDQVF--EAGLKLPLVAKPL 167 (290)
Q Consensus 98 P~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-----~---~~~~l~--~agl~fP~I~Kp~ 167 (290)
...+|..+.++..+.||...++.|++ ..|.+|+.++++.+.. + ..+.++ ...+.+|+|.||+
T Consensus 82 -~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv 153 (330)
T 3t7a_A 82 -NPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV 153 (330)
T ss_dssp -CCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEES
T ss_pred -CCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccc
Confidence 56789999999999999999999985 3578899999865431 0 011122 2346799999997
Q ss_pred cccCCCCceeEEEEecCC----------------------CCCCCCCCeeEEeeeecCeeEEEEEEEcceE-EEEEecCC
Q 022919 168 VVDGSAKSHELFLAYDRF----------------------SLSELEPPMLLQEFVNHGGILFKIYIIGETI-KVVRRFSL 224 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~----------------------gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v-~v~~R~Sl 224 (290)
- |+ -|...|-|... ..-.-+...++||||..+|.-+||||||+.+ ....|.|-
T Consensus 154 ~--Gs--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp 229 (330)
T 3t7a_A 154 S--AE--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP 229 (330)
T ss_dssp B--TT--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECT
T ss_pred c--cc--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCC
Confidence 6 43 25555555322 1122345799999999999999999999877 56888773
Q ss_pred CCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCceeeeeecC
Q 022919 225 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 225 pn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~LfGfDli 290 (290)
. ..++ |. +|.+ .+... ...++ .+..+++|....+++|+...||||+
T Consensus 230 -~-~~G~-------~r----~N~~----gG~~~-~~v~L--t~eek~iA~kaa~a~G~~v~GVDlL 275 (330)
T 3t7a_A 230 -A-LDGK-------VE----RDSE----GKEVR-YPVIL--NAREKLIAWKVCLAFKQTVCGFDLL 275 (330)
T ss_dssp -T-SSCB-------CC----BCTT----SCBCC-EECCC--CHHHHHHHHHHHHHTTBSEEEEEEE
T ss_pred -C-CCCc-------EE----EcCC----CCcee-eeecC--CHHHHHHHHHHHHHhCCceEEEEEE
Confidence 1 1111 11 0111 01100 01122 2356999999999999999999984
No 4
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.25 E-value=4.2e-11 Score=106.24 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=132.2
Q ss_pred HHHHHhhccceEEEEecCCCCCCC-------CCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~-------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l 119 (290)
.+...+++.|++++.+|.+..... ...+|++++..........++++.++. .+.++.|+++++...|+..+.
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~ 93 (280)
T 1uc8_A 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWATS 93 (280)
T ss_dssp HHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHHHH
T ss_pred HHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHHHH
Confidence 367778889999999987654311 236895555543322223455555555 566778999999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------C--
Q 022919 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------L-- 190 (290)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l-- 190 (290)
+.+++. .+.+|++..+++ .+++.+.+. .+.||+|+||....| +..+.++.+++.|.. +
T Consensus 94 ~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~---~~gv~~v~~~~el~~~~~~~~~~~~ 160 (280)
T 1uc8_A 94 VALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSW---GRLLAXXXXXXXXXXXXXXKEVLGG 160 (280)
T ss_dssp HHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCB---CSHHHHHHHHHC------------C
T ss_pred HHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCC---cccceecccccccchhhhhHhhhcc
Confidence 998864 356799988852 222222222 356999999977665 455666766665542 1
Q ss_pred --CCCeeEEeeeecCeeEEEEEEEcceEEEE-EecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHH
Q 022919 191 --EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLP 267 (290)
Q Consensus 191 --~~P~V~QeFinH~gvl~KvYVvGd~v~v~-~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~ 267 (290)
..++++||||+..+.-+.++++|+.+... .|.+ .++... .+.-. . .. + ... .+
T Consensus 161 ~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~-~~~~~~----------~~~g~---~---~~---p--~~l--~~ 216 (280)
T 1uc8_A 161 FQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS-AHWITN----------TARGG---Q---AE---N--CPL--TE 216 (280)
T ss_dssp TTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC-------------------------------CE---E--CCC--CH
T ss_pred cCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-CCcccc----------ccCCc---c---cc---C--CCC--CH
Confidence 46899999999878899999999987543 3322 111110 00000 0 00 0 011 23
Q ss_pred HHHHHHHHHHHHhCceeeeeecC
Q 022919 268 ALCWKGLQGNSAIGWAFGCLTLI 290 (290)
Q Consensus 268 ~v~~iA~~LR~~LGL~LfGfDli 290 (290)
.+.++|..+-++||+.++|+|++
T Consensus 217 ~~~~~~~~~~~~lg~g~~~vD~~ 239 (280)
T 1uc8_A 217 EVARLSVKAAEAVGGGVVAVDLF 239 (280)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEE
Confidence 68899999999999999999975
No 5
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.06 E-value=5.2e-10 Score=101.61 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=134.7
Q ss_pred HHHHHhhccceEEEEecCCCC---CCCCCCceEEEecccchHHH-HHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~p---l~~Qgp~DvILHKltd~~~~-~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~ 121 (290)
.+...+++.|++.+.+|.+.. +.....+|+++.-+.+.... ..++.+.+.. ++.++-| +++++...|+..+.+.
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~~~~ 104 (307)
T 3r5x_A 26 EMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL-GIPYSGSNMLSSGICMDKNISKKI 104 (307)
T ss_dssp HHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH-TCCBSSSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHH
Confidence 366667889999999999843 33335899999987654211 1233344333 5677765 8999999999999999
Q ss_pred HhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCCC-------CCCe
Q 022919 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPM 194 (290)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l-------~~P~ 194 (290)
+++. .|.+|++..++.. ++.... ....+.||+|+||....| |..+.++.+++.|... ..++
T Consensus 105 l~~~-------Gip~p~~~~~~~~-~~~~~~-~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (307)
T 3r5x_A 105 LRYE-------GIETPDWIELTKM-EDLNFD-ELDKLGFPLVVKPNSGGS---SVGVKIVYDKDELISMLETVFEWDSEV 172 (307)
T ss_dssp HHHT-------TCCCCCEEEEESS-SCCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEE
T ss_pred HHHC-------CCCCCCEEEEeCh-hhhhHH-HHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCE
Confidence 8854 4678999988642 223221 123468999999977555 5678889998877532 5789
Q ss_pred eEEeeeecCeeEEEEEEEcceEEE--EEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHH
Q 022919 195 LLQEFVNHGGILFKIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALC 270 (290)
Q Consensus 195 V~QeFinH~gvl~KvYVvGd~v~v--~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~ 270 (290)
++||||+ |.-|-|.|+|+++.. ..++.-. +... ...+.....+ ... ...++ .+.+.
T Consensus 173 lvee~i~--G~e~~v~v~~g~~~~~~~~~~~~~-~~~~-----~~~~~~~g~~-----~~p-------~~l~~~~~~~i~ 232 (307)
T 3r5x_A 173 VIEKYIK--GEEITCSIFDGKQLPIISIRHAAE-FFDY-----NAKYDDASTI-----EEV-------IELPAELKERVN 232 (307)
T ss_dssp EEEECCC--SEEEEEEEETTEECCCEEEEEEEE-EETT-----EEEEEEEEEE-----EEE-------CCCCHHHHHHHH
T ss_pred EEECCcC--CEEEEEEEECCEEeeEEEEEcCCc-ccCh-----hhcCCCCCCe-----Eec-------CCCCHHHHHHHH
Confidence 9999999 689999999997622 1111100 0000 0000000000 000 01121 34689
Q ss_pred HHHHHHHHHhCce-eeeeecC
Q 022919 271 WKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 271 ~iA~~LR~~LGL~-LfGfDli 290 (290)
++|..+-+.||+. ++++|++
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~ 253 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMM 253 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHhCCCceEEEEEE
Confidence 9999999999999 9999975
No 6
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.04 E-value=1.1e-09 Score=102.83 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=120.0
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022919 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (290)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (290)
.+|++|=+.... .|+..+. +.+. -.+.+|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~-~le~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVI-GMQY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHH-HHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHH-HHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEee
Confidence 479888777443 2454333 3343 389999999999999999 566676665433 12232233322
Q ss_pred ccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
. +. .+.+ ..+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||+ .|.-+.|||||++
T Consensus 142 ~-~~---~~~~--~~~g~PvVvK~~~Gs~---G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-NH---REML--TLPTFPVVVKIGHAHS---GMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-SG---GGGS--SCCCSSEEEEESSCST---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-Ch---hhhh--hccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1222 2367999999977443 477999999987743 256789999999 7999999999999
Q ss_pred EEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CceeeeeecC
Q 022919 216 IKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI-GWAFGCLTLI 290 (290)
Q Consensus 216 v~v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L-GL~LfGfDli 290 (290)
+....|.|.. ++..+ + + .+.. ...|..+..+++|....+++ |+.+.|.|+|
T Consensus 212 v~a~~Rr~~~g~wrtN-------------~---~-~~~~-------e~~~l~~e~~~la~~A~~a~gGldi~GVDll 264 (309)
T 1i7n_A 212 YKAYMRTSISGNWKTN-------------T---G-SAML-------EQIAMSDRYKLWVDACSEMFGGLDICAVKAV 264 (309)
T ss_dssp EEEEEEESSCTTTSCS-------------C---C-CSSE-------EEECCCHHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred EEEEEEEcCCCCCeec-------------C---C-ccee-------eecCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999998852 12111 1 1 1100 12233456889999999999 8999999975
No 7
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.03 E-value=3.7e-09 Score=95.23 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=132.4
Q ss_pred HHHHHhhccceEEEEecCCCCCCC---CCCceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSML 119 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~---Qgp~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l 119 (290)
.+...+++.|++++.+|.+..... ...+|+|+..+.. +. ..++...+.. .+.++ .++++++...|+..+.
T Consensus 25 ~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~--~~~~~~~e~~-g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 25 AVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGED--GTLQGMLELM-GLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcc--hHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHH
Confidence 377778899999999998743222 1478999877632 11 0122233332 56655 7899999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEccCCCCchh------HHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC----
Q 022919 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPD------QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---- 189 (290)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~------~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---- 189 (290)
+.+++. .+.+|++..++.. ++.+ ......+.||+|+||....| +..+.++.+.+.|..
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~---~~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREGS---SVGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCCT---TTTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHH
Confidence 998854 3668998887532 1111 00123678999999977665 456788889887652
Q ss_pred ---CCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC-
Q 022919 190 ---LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS- 265 (290)
Q Consensus 190 ---l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~- 265 (290)
...++++||||+ |.-|-|.++|+++..+.+....+ +.+.+. .+..+.. ....-+ ...++
T Consensus 170 ~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~----------~~~~~~--~~~~~g~-~~~~~p--~~l~~~ 232 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPSG----------TFYDYE--AKFLSDE-TQYFCP--AGLEAS 232 (306)
T ss_dssp HTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECSS----------SSSCHH--HHHTCSC-CEEESS--CCCCHH
T ss_pred HHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeCC----------CeEchh--heecCCC-eeEEcC--CCCCHH
Confidence 357899999998 78999999998753222111111 011110 0000000 000000 01111
Q ss_pred -HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 266 -LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 266 -~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.+.+.++|..+-++||+. .+|+|++
T Consensus 233 ~~~~i~~~a~~~~~~lg~~G~~~vD~~ 259 (306)
T 1iow_A 233 QEANLQALVLKAWTTLGCKGWGRIDVM 259 (306)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 346888999999999997 9999975
No 8
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.02 E-value=7.9e-10 Score=103.28 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=133.6
Q ss_pred HHHHhhccceEEEEecCCCCC--------------------------------------CCCCCceEEEecccchHHH-H
Q 022919 48 LEILARNKGISFVAIDQNRPL--------------------------------------SDQGPFDVVLHKLSGMEWC-K 88 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl--------------------------------------~~Qgp~DvILHKltd~~~~-~ 88 (290)
+.+..++.|++.++||.++.- ..+..+|+|+.-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 555567788898888877642 0123689998888654221 1
Q ss_pred HHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeec
Q 022919 89 IIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 167 (290)
Q Consensus 89 ~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~ 167 (290)
.+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|++..++..... ....+.||+|+||.
T Consensus 107 ~iq~~le~~-gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLELS-GIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHHH-CCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 345555443 5666655 88999999999999998854 4678999988543211 13468999999997
Q ss_pred cccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcc----eEEEEEecCCCCCchhhhhccc
Q 022919 168 VVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE----TIKVVRRFSLPNVSKRELAKVV 236 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd----~v~v~~R~Slpn~~~~~~~~~~ 236 (290)
...| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+|+ .+..+.+....+
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~~~---------- 238 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITLSH---------- 238 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECCC-----------
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEecCC----------
Confidence 6554 566888999887752 457899999999 78999999998 333232222211
Q ss_pred eeeeeCCc--cCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 237 SVFRFPRV--SSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 237 ~~~~f~~v--S~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
+++.+++- .+..... ....-+ +.+++ .+.+.++|..+-++||+ .++++|++
T Consensus 239 ~~~d~~q~~~~ky~~~~-~~~~~p--a~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 294 (346)
T 3se7_A 239 GFFKIHQESTPESGSDN-SAVTVP--ADISTTSRSLVQDTAKAVYRALGCRGLSRVDLF 294 (346)
T ss_dssp -------------CGGG-SCEESS--CCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCcCcccchhccccCCC-eeEEeC--CCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 22333110 0000000 000000 12222 35789999999999999 69999975
No 9
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.98 E-value=3.4e-09 Score=100.90 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=120.9
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022919 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (290)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (290)
.+|++|=+.... .|+. +-++.+.. .+.+|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~-vl~~le~~-GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRS-LVIGLQYG-GLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHH-HHHHHHHT-TCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHH-HHHHHHHC-CceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEec
Confidence 689888877552 2454 33344443 89999999999999999 666777665533 12232233323
Q ss_pred ccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
. +..++ ...+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||+ .|.-+.|||||++
T Consensus 159 ~-~~~~~-----~~~~g~PvVvK~~~Gs~---G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM-----VTAPHFPVVVKLGHAHA---GMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC-----CCCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh-----hhccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22111 12467999999977443 477999999998763 256788999999 7999999999999
Q ss_pred EEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CceeeeeecC
Q 022919 216 IKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI-GWAFGCLTLI 290 (290)
Q Consensus 216 v~v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L-GL~LfGfDli 290 (290)
+....|.|.. ++..+ + + .+.. ...+..+..+++|....+.+ |+.+.|.|+|
T Consensus 229 vva~~R~~~~g~wrtN-------------~---~-~~~~-------e~~~l~~e~~~la~~Aa~a~gGldi~GVDll 281 (344)
T 2p0a_A 229 YKAYMRTSISGNWKAN-------------T---G-SAML-------EQVAMTERYRLWVDSCSEMFGGLDICAVKAV 281 (344)
T ss_dssp EEEEEEEESSSCSSTT-------------S---S-SEEE-------EEECCCHHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred EEEEEEecCCCCCeec-------------C---C-ceEE-------EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9988888752 22221 1 0 0000 02233456899999999999 8999999975
No 10
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.94 E-value=2.9e-09 Score=103.83 Aligned_cols=178 Identities=11% Similarity=0.091 Sum_probs=120.1
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022919 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (290)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (290)
.+|++|=+.... .|+..+. +.+.. .+.+|+++++|....|+ ..+++.+..+.. ..+..|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr-~lE~~-GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVI-GLQYA-GIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHH-HHHHT-TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHH-HHHHC-CccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCceEec
Confidence 479888777543 2554444 44443 89999999999999999 456666665433 12222233333
Q ss_pred ccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
. +.. +.+ ..+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||. .+..+.|||||++
T Consensus 254 ~-~~~---~~i--~~~g~PvVvKp~~GS~---G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NHK---EML--SSTTYPVVVKMGHAHS---GMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SGG---GCC--CCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chh---hhh--hccCCCEEEEeCCCCc---eeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 211 111 2467999999977444 477999999987763 256788999999 7999999999999
Q ss_pred EEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CceeeeeecC
Q 022919 216 IKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI-GWAFGCLTLI 290 (290)
Q Consensus 216 v~v~~R~Slp-n~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L-GL~LfGfDli 290 (290)
+....|.+.. ++..+ + + .+.. ...+..+..+++|....+.+ |+.+.|.|||
T Consensus 324 vva~~Rr~~~g~WrtN-------------v---g-~g~~-------e~i~lt~e~~elA~kAaka~gGldiaGVDlL 376 (422)
T 1pk8_A 324 YKAYMRTSVSGNWKTN-------------T---G-SAML-------EQIAMSDRYKLWVDTCSEIFGGLDICAVEAL 376 (422)
T ss_dssp EEEEEEEESSSCSSTT-------------S---S-CEEE-------EEECCCHHHHHHHHHHTTGGGCCSEEEEEEE
T ss_pred EEEEEEEcCCCCceec-------------c---C-ceee-------eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9988888752 12111 1 0 0000 01233456899999999999 8999999975
No 11
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.93 E-value=7.1e-09 Score=95.26 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=131.3
Q ss_pred HHHHhhccceEEEEecCCCCCCC---CCCceEEEecccchH-HHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHH
Q 022919 48 LEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDV 122 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~~---Qgp~DvILHKltd~~-~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l 122 (290)
+....++.|++.+.+|....... ...+|+++--+.+.. ....++.+.+.. ++.++ .++.++...+|+..+.+.+
T Consensus 37 v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l 115 (317)
T 4eg0_A 37 VLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFY-GIRYTGSGVLGSALGLDKFRTKLVW 115 (317)
T ss_dssp HHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHH-TCEESSCCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHH
Confidence 66667889999999996543222 247899987665421 012345555544 57776 6779999999999999998
Q ss_pred hhcccCCCCCceecCceEEEccCCCCchhHHH--hcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCC
Q 022919 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF--EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPP 193 (290)
Q Consensus 123 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~--~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P 193 (290)
++. .|.+|++..++.. ++..+... ...+.||+|+||....| |..+.++.+++.|. ....+
T Consensus 116 ~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~ 184 (317)
T 4eg0_A 116 QQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEGS---SVAVLKVKTADALPAALSEAATHDKI 184 (317)
T ss_dssp HHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSE
T ss_pred HHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCe
Confidence 854 4678999888532 22322220 13578999999976555 46678899998875 33568
Q ss_pred eeEEeeeecCeeEEEEEEEcceEEE-EEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHH
Q 022919 194 MLLQEFVNHGGILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALC 270 (290)
Q Consensus 194 ~V~QeFinH~gvl~KvYVvGd~v~v-~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~ 270 (290)
+++||||++ |.-|-|.|+||.+.. +.+-+- ..++.+..--...... ..-+ +.+++ .+.+.
T Consensus 185 ~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~-----------~~~~~~~~k~~~g~~~---~~~P--~~l~~~~~~~l~ 247 (317)
T 4eg0_A 185 VIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA-----------GEFYDYHAKYVANDTQ---YLIP--CGLPAEQETELK 247 (317)
T ss_dssp EEEEECCCS-SEEEEEEEETTCCCCCEEEEC--------------------------CE---EESS--CSSCHHHHHHHH
T ss_pred EEEEcCCCC-CcEEEEEEECCcccceEEEeeC-----------CceechhhcccCCCee---EEcC--CCCCHHHHHHHH
Confidence 999999997 788999999995321 111110 0111221100000000 0000 01111 35788
Q ss_pred HHHHHHHHHhCce-eeeeecC
Q 022919 271 WKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 271 ~iA~~LR~~LGL~-LfGfDli 290 (290)
++|..+-++||+. ++++|++
T Consensus 248 ~~a~~~~~~lg~~G~~~vD~~ 268 (317)
T 4eg0_A 248 RIARRAFDVLGCTDWGRADFM 268 (317)
T ss_dssp HHHHHHHHTTTCCSEEEEEEE
T ss_pred HHHHHHHHHhCCCceEEEEEE
Confidence 9999999999997 9999974
No 12
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.71 E-value=6.3e-08 Score=86.98 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=99.4
Q ss_pred HHHHHhhccceEEEEecCCCCC-C-----------------------------CCCCceEEEecccc---hHH--HHHHH
Q 022919 47 KLEILARNKGISFVAIDQNRPL-S-----------------------------DQGPFDVVLHKLSG---MEW--CKIIE 91 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl-~-----------------------------~Qgp~DvILHKltd---~~~--~~~l~ 91 (290)
.+...++++|++++.+|.+..- . +-..+|+|+-.... .++ ...+.
T Consensus 23 ~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 102 (316)
T 1gsa_A 23 AMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102 (316)
T ss_dssp HHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHH
Confidence 3666778899999888764210 0 00136777765532 222 22333
Q ss_pred HHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccC
Q 022919 92 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (290)
Q Consensus 92 ~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G 171 (290)
+..+.. .+.++.++++++...|+..+.+.++ .+|++..++ +.+++.+.+... . |+|+||....|
T Consensus 103 ~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~~--~-p~vvKP~~g~~ 166 (316)
T 1gsa_A 103 ERAEEK-GTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEKH--S-DIILKPLDGMG 166 (316)
T ss_dssp HHHHHT-TCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHHH--S-SEEEECSSCCT
T ss_pred HHHHHc-CCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHHc--C-CEEEEECCCCC
Confidence 333343 4677899999999999988777654 468888774 222222223333 3 99999977554
Q ss_pred CCCceeEEEEe-cCCCCC-------CC-CCCeeEEeeeecC-eeEEEEEEEcceEEE
Q 022919 172 SAKSHELFLAY-DRFSLS-------EL-EPPMLLQEFVNHG-GILFKIYIIGETIKV 218 (290)
Q Consensus 172 s~~SH~Malvf-~~~gL~-------~l-~~P~V~QeFinH~-gvl~KvYVvGd~v~v 218 (290)
+..+.++. +++.|. .. ..|+++||||+.. +.-+-++|+|+.+..
T Consensus 167 ---g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~ 220 (316)
T 1gsa_A 167 ---GASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVP 220 (316)
T ss_dssp ---TTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECS
T ss_pred ---cccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEee
Confidence 45677787 776653 22 3689999999974 788999999998763
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.60 E-value=1.3e-07 Score=98.08 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=104.4
Q ss_pred HHHHHhhccceEEEEecCCCCCCCC---CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHh
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQ---GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA 123 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Q---gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (290)
.+.+.|+++|++++.||.+.++-.. ..+|++.. -.+.-.++..++...-|+..+.+.+.
T Consensus 432 ~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~ 493 (750)
T 3ln6_A 432 LLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILD 493 (750)
T ss_dssp HHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHH
Confidence 4788899999999999998776532 24444432 13355667778888779998888887
Q ss_pred hcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEe---cCCCCCC-------CCCC
Q 022919 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE-------LEPP 193 (290)
Q Consensus 124 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf---~~~gL~~-------l~~P 193 (290)
+. .|.+|++.++.+ .++..+.. ...+.||+|+||.. |+. +..+.++. +.+.+.. ...+
T Consensus 494 ~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~--G~~-G~GV~iv~~~~s~eel~~a~~~~~~~~~~ 561 (750)
T 3ln6_A 494 EK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKS--TNF-GLGISIFKTSANLASYEKAIDIAFTEDSA 561 (750)
T ss_dssp HT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETT--CCS-SSSCEEESSCCCHHHHHHHHHHHHHHCSE
T ss_pred HC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCC--CCC-CCCEEEEeCCCCHHHHHHHHHHHHhhCCc
Confidence 53 467788887753 22332322 13578999999955 432 56788887 4554431 2568
Q ss_pred eeEEeeeecCeeEEEEEEEcceEEEEEecCCCCC
Q 022919 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (290)
Q Consensus 194 ~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~ 227 (290)
+++||||. |.-|-|+|+||++.-+.+.-.+++
T Consensus 562 vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v 593 (750)
T 3ln6_A 562 ILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANV 593 (750)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEEECCEE
T ss_pred EEEEeccC--CCEEEEEEECCEEEEEEEEecceE
Confidence 99999998 789999999999987655555543
No 14
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.59 E-value=5.4e-07 Score=85.04 Aligned_cols=221 Identities=11% Similarity=0.117 Sum_probs=128.3
Q ss_pred EEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCCCCCCCce-EEEecccchHHH-H-----------------H
Q 022919 29 LVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEWC-K-----------------I 89 (290)
Q Consensus 29 ~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~D-vILHKltd~~~~-~-----------------~ 89 (290)
.+||..-.-. +...+...+++.|++.+-+|.+..-....-.| .+.-...|.+.. + .
T Consensus 15 k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~ 89 (389)
T 3q2o_A 15 KTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYR 89 (389)
T ss_dssp SEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHH
T ss_pred CEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHH
Confidence 3555554432 23446677888999999999764322211122 222223332110 0 1
Q ss_pred HHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccc
Q 022919 90 IEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (290)
Q Consensus 90 l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA 169 (290)
+-++.+++. + +--++++++...||..+.+.++++ .|.+|++..+++ .+++.+... .+.||+|+||..
T Consensus 90 ~~~~l~~~g-~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~- 156 (389)
T 3q2o_A 90 CLQWLEKHA-Y-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTT- 156 (389)
T ss_dssp HHHHHHHHS-C-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESS-
T ss_pred HHHHHHhhC-c-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCC-
Confidence 112222222 1 456778999999999999998865 366788888852 222222222 467999999954
Q ss_pred cCCCCceeEEEEecCCCCCCC-----CCCeeEEeeeecCeeEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeee
Q 022919 170 DGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRF 241 (290)
Q Consensus 170 ~Gs~~SH~Malvf~~~gL~~l-----~~P~V~QeFinH~gvl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f 241 (290)
|...+..|.++.+++.|... ..++++||||+ ++.-|-|.+++| .+.+. +..-+... .+.+.
T Consensus 157 -~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~--~~~e~~~~------~g~~~- 225 (389)
T 3q2o_A 157 -GGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF--PVAENIHV------NNILH- 225 (389)
T ss_dssp -CCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC--CCEEEEEE------TTEEE-
T ss_pred -CCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe--cCeeeEEc------CCceE-
Confidence 43335889999999987642 46999999999 457788888865 22211 11111111 11110
Q ss_pred CCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 242 PRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 242 ~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.+..++ .+++. -.+.+.++|+.+-++||+. ++++|++
T Consensus 226 --~~~~p~-----~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~ 263 (389)
T 3q2o_A 226 --ESIVPA-----RITEE-----LSQKAIAYAKVLADELELVGTLAVEMF 263 (389)
T ss_dssp --EEEESC-----SSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred --EEECCC-----CCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 000000 11100 1457889999999999997 8888864
No 15
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.47 E-value=6.6e-06 Score=77.71 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHhhccceEEEEecCCCCCCCCCCce-EEEecccchHH-------------------HHHHHHHHHhCCCeEEeCCh
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEW-------------------CKIIEDYRQKHPEVTILDPP 106 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Qgp~D-vILHKltd~~~-------------------~~~l~~y~~~hP~v~ViDP~ 106 (290)
.+...|++.|++.+-+|.+..-....-.| .+.--.+|.+. .+.+.+..+.. .|.-++
T Consensus 26 ~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~~l~~~~---~v~p~~ 102 (377)
T 3orq_A 26 MMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKY---NIPQGY 102 (377)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHHHHHHHS---CCTTTT
T ss_pred HHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHHHHhhhc---CCCCCH
Confidence 36667888999999999754311111111 22222233221 11122222221 233456
Q ss_pred hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCC
Q 022919 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (290)
Q Consensus 107 ~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~g 186 (290)
++++...||..+.+.++++ .|.+|++..+++ .+++.+... .+.||+|+||.. |.++++.+.++.+++.
T Consensus 103 ~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~--gg~~g~Gv~~v~~~~e 170 (377)
T 3orq_A 103 QAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKTRF--GGYDGKGQVLINNEKD 170 (377)
T ss_dssp HHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEESS--SCCTTTTEEEECSTTS
T ss_pred HHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEeCC--CCCCCCCeEEECCHHH
Confidence 8888899999988888754 467889988852 223333322 467999999954 4334677889999998
Q ss_pred CCC-----CCCCeeEEeeeecCeeEEEEEEE-cc--eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCC
Q 022919 187 LSE-----LEPPMLLQEFVNHGGILFKIYII-GE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (290)
Q Consensus 187 L~~-----l~~P~V~QeFinH~gvl~KvYVv-Gd--~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~ 258 (290)
|.. ...++++||||+ +..=|-|.++ +. .+.+. |..-+.. ..+.+.. + +. +
T Consensus 171 l~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~~~~~g~~~~~--~~~e~~~------~~g~~~~---~-------~~---P 228 (377)
T 3orq_A 171 LQEGFKLIETSECVAEKYLN-IKKEVSLTVTRGNNNQITFF--PLQENEH------RNQILFK---T-------IV---P 228 (377)
T ss_dssp HHHHHHHHTTSCEEEEECCC-EEEEEEEEEEECGGGCEEEC--CCEEEEE------ETTEEEE---E-------EE---S
T ss_pred HHHHHHhcCCCcEEEEccCC-CCEEEEEEEEEeCCCCEEEE--CCEeEEE------ECCEEEE---E-------EC---C
Confidence 753 247899999998 3356777777 22 22221 1100000 0111100 0 00 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 259 GIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 259 ~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
+.+++.+.+.++|..+-++||+. +|++|++
T Consensus 229 --a~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~ 259 (377)
T 3orq_A 229 --ARIDKTAEAKEQVNKIIQSIHFIGTFTVEFF 259 (377)
T ss_dssp --CSSCCHHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred --CCCCHHHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 01122678899999999999997 8999874
No 16
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.46 E-value=8.7e-07 Score=83.03 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=110.8
Q ss_pred CCceEEEecc---cchHHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC
Q 022919 72 GPFDVVLHKL---SGMEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (290)
Q Consensus 72 gp~DvILHKl---td~~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~ 147 (290)
..+|+|+--+ .++. ..++...+.. ++.++-| +.++...+|+..+.+.+++. .|.+|++..++....
T Consensus 86 ~~~D~v~~~~~g~~~ed--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 155 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED--GTIQGLFEVL-DVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEY 155 (364)
T ss_dssp SBCSEEEEECCCSSSCT--THHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHH
T ss_pred cCCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhh
Confidence 3678888544 2321 1133333332 4666654 89999999999999998864 366789988852210
Q ss_pred -----CchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 148 -----SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 148 -----~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
+..... ...+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+|+.
T Consensus 156 ~~~~~~~~~~~-~~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 156 EKYEHNILKLV-NDKLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHHH-HHHCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred cccchhHHHHH-HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 001111 13578999999976555 457889999887652 357899999998 688999999985
Q ss_pred ---EE-EEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCc-eeeeee
Q 022919 216 ---IK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGW-AFGCLT 288 (290)
Q Consensus 216 ---v~-v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL-~LfGfD 288 (290)
+. +.++.. . .+++.+.. +..... ....-+ +..++ .+.+.++|..+-++||+ -++++|
T Consensus 230 ~~~~~~~~e~~~-~----------~~~~~~~~--k~~~g~-~~~~~p--a~l~~~~~~~i~~~a~~~~~alg~~G~~~vD 293 (364)
T 2i87_A 230 YPEATWPGEVVK-D----------VAFYDYKS--KYKDGK-VQLQIP--ADLDEDVQLTLRNMALEAFKATDCSGLVRAD 293 (364)
T ss_dssp SCEECCCEEECC-S----------CCC--------------CCEESS--CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcEEeeeEEEec-C----------CCcCCHHH--cccCCC-eeEEeC--CCCCHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11 111111 0 01222211 000000 000000 11221 35788999999999999 599999
Q ss_pred cC
Q 022919 289 LI 290 (290)
Q Consensus 289 li 290 (290)
++
T Consensus 294 ~~ 295 (364)
T 2i87_A 294 FF 295 (364)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.42 E-value=4.4e-06 Score=79.03 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=115.5
Q ss_pred CCceEEEecccchHH-HHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC--
Q 022919 72 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-- 147 (290)
Q Consensus 72 gp~DvILHKltd~~~-~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-- 147 (290)
..+|+|+--+.+..- ...++...+.. .+.++ -++.++...+|+..+.+.+++. .|.+|++..++...+
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~ 163 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKLL-DKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANN 163 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHHc-CCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccch
Confidence 368888866533210 01244444444 67776 7889999999999999998843 477899998853311
Q ss_pred CchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeeeecCeeEEEEEEEcce---EE
Q 022919 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGET---IK 217 (290)
Q Consensus 148 ~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFinH~gvl~KvYVvGd~---v~ 217 (290)
....... ..+.||+|+||....| |..+.++.+++.|. ....++++||||+ |..-|-|.|+||. +.
T Consensus 164 ~~~~~~~-~~~g~PvvVKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~~~~~~ 238 (377)
T 1ehi_A 164 WSWDKIV-AELGNIVFVKAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGNDQPLVS 238 (377)
T ss_dssp CCHHHHH-HHHCSCEEEEESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESSSCEEE
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCCCcEEE
Confidence 1112211 2467999999977555 45688999988764 2357899999997 2277889999983 33
Q ss_pred -EEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 218 -VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 218 -v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
+.++-.. ..+. ..+++.+.. +..........-+ +..++ .+.+.++|..+-++||+. ++++|++
T Consensus 239 ~~~ei~~~-~~~~-----~~~~~d~~~--k~~~g~~~~~~~P--a~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~ 305 (377)
T 1ehi_A 239 EIGAHTVP-NQGS-----GDGWYDYNN--KFVDNSAVHFQIP--AQLSPEVTKEVKQMALDAYKVLNLRGEARMDFL 305 (377)
T ss_dssp EEEEEECT-TSSS-----SSCCCCHHH--HTTCCTTCEEESS--CCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeEEEEec-CCCC-----cCceeCHHh--cccCCCCeeEEeC--CCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2333211 0000 001111111 0000000000000 11221 356889999999999998 8899874
No 18
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.39 E-value=1.4e-06 Score=83.26 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=129.3
Q ss_pred ccEEEEEEechhhhhhccchHHHHHhhccceEEEEecCCCCC-CCCC--CceEEEecccchHHHHHHHHHHHhCC-----
Q 022919 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPL-SDQG--PFDVVLHKLSGMEWCKIIEDYRQKHP----- 98 (290)
Q Consensus 27 ~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~~v~lD~~~pl-~~Qg--p~DvILHKltd~~~~~~l~~y~~~hP----- 98 (290)
+..+||..-.-. ....+...|++.|++.+.+| +..- ..|- .+..+.-..+|.. .++++.++ +
T Consensus 23 ~~~~I~ilGgG~-----lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~---~l~~~a~~-~d~i~~ 92 (403)
T 3k5i_A 23 NSRKVGVLGGGQ-----LGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKERE---AVRQLAKT-CDVVTA 92 (403)
T ss_dssp SCCEEEEECCSH-----HHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHH---HHHHHHTT-CSEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHH---HHHHHHHh-CCEEEE
Confidence 345566655431 23346667888999999999 4311 1121 1233444444432 22222221 1
Q ss_pred ---------------CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcc-CCCCchhHHHhcCCccce
Q 022919 99 ---------------EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPL 162 (290)
Q Consensus 99 ---------------~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~-~~~~~~~~l~~agl~fP~ 162 (290)
.+.+.-++++++...||..+.+.++++ .|.+|++..++. +.+++.+.. ..+.||+
T Consensus 93 e~e~~~~~~l~~l~~g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~ 163 (403)
T 3k5i_A 93 EIEHVDTYALEEVASEVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPL 163 (403)
T ss_dssp SSSCSCHHHHHHHTTTSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSE
T ss_pred CCCCCCHHHHHHHHcCCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCE
Confidence 455677889999999999999888754 477899988852 222222222 2467999
Q ss_pred EeeeccccCCCCceeEEEEecCCCCCC----C-CCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccce
Q 022919 163 VAKPLVVDGSAKSHELFLAYDRFSLSE----L-EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVS 237 (290)
Q Consensus 163 I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l-~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~ 237 (290)
|+||.. |+..+..+.++.+++.|.. + ..++++||||+. +.=+=|.+++|.--+..-|..-+... .+
T Consensus 164 VvKp~~--gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~E~sv~v~~~~~g~~~~p~~~~~~~------~g 234 (403)
T 3k5i_A 164 MLKSKT--MAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYF-KMELAVIVVKTKDEVLSYPTVETVQE------DS 234 (403)
T ss_dssp EEEESS--SCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCE-EEEEEEEEEECSSCEEECCCEEEEEE------TT
T ss_pred EEEeCC--CCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCC-CeEEEEEEEEcCCCEEEeCCeeeEEe------CC
Confidence 999954 4334568899999998753 2 468999999973 56677777766321111111111111 11
Q ss_pred eeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 238 VFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 238 ~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.+.. +-.++ ..+++. -.+.+.++|..+-++||+. +|++|++
T Consensus 235 ~~~~---~~~Pa----~~l~~~-----~~~~~~~~a~~i~~~Lg~~G~~~ve~~ 276 (403)
T 3k5i_A 235 ICKL---VYAPA----RNVSDA-----INQKAQELARKAVAAFDGKGVFGVEMF 276 (403)
T ss_dssp EEEE---EEESC----SSCCHH-----HHHHHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred EEEE---EEeCC----CCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 1110 00000 001100 1346788999999999986 7888864
No 19
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.37 E-value=1.5e-06 Score=90.17 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=103.5
Q ss_pred hHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCC-eEEeCChhHHhhhccHHHHHHHHhh
Q 022919 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVAD 124 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~-v~ViDP~~~i~~l~dR~~~l~~l~~ 124 (290)
+.+++.|+++||+++.++.+.++-.-|--|-+- .+ -|. .+.-++..++...-|+..+.+.+.+
T Consensus 436 ~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~i---------------g~~~~t~~~s~~aa~~~~DK~~tk~lL~~ 499 (757)
T 3ln7_A 436 QALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-YV---------------KNGNMTSHDSYISPLIMENKVVTKKVLQK 499 (757)
T ss_dssp HHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-EE---------------ETTTBCSSSBSHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECCCHHHHHhcccccce-ee---------------ccCccCCCCHHHHHHHhcCHHHHHHHHHH
Confidence 358888999999999999888865333111110 00 122 3445677778887799988888875
Q ss_pred cccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEE----ecCCCCCC-------CCCC
Q 022919 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE-------LEPP 193 (290)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malv----f~~~gL~~-------l~~P 193 (290)
. .|.+|++.++.+ .++..+.. ...+.||+|+||....| +..|.++ .+.+.|.. ...+
T Consensus 500 ~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~g~~---G~GV~iv~~~v~~~eel~~al~~a~~~~~~ 567 (757)
T 3ln7_A 500 A-------GFNVPQSVEFTS-LEKAVASY-ALFENRAVVIKPKSTNY---GLGITIFQQGVQNREDFAKALEIAFREDKE 567 (757)
T ss_dssp H-------TCCCCCEEEESC-HHHHHHGG-GGSSSSCEEEEESSCST---TTTCEECSSCCCCHHHHHHHHHHHHHHCSS
T ss_pred C-------CcCCCCEEEECC-HHHHHHHH-HHhcCCCEEEEeCCCCC---CCCeEEecCCCCCHHHHHHHHHHHHhcCCc
Confidence 4 467899988752 11111111 13578999999976554 4567887 56666542 2568
Q ss_pred eeEEeeeecCeeEEEEEEEcceEEEEEecCCCCC
Q 022919 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (290)
Q Consensus 194 ~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~ 227 (290)
+++||||. |.-|-|+|+|+++.-+.+.-.+++
T Consensus 568 vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~V 599 (757)
T 3ln7_A 568 VMVEDYLV--GTEYRFFVLGDETLAVLLRVPANV 599 (757)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEECCSEE
T ss_pred EEEEEcCC--CcEEEEEEECCEEEEEEEEecccc
Confidence 99999995 689999999999987666655654
No 20
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.36 E-value=4.4e-06 Score=79.67 Aligned_cols=238 Identities=13% Similarity=0.141 Sum_probs=138.5
Q ss_pred CCCCccEEEEEEe---chhhhhhccchH-HHHHhhccceEEEEecCCCCC------------------------------
Q 022919 23 VLQPERLVVGYAL---TSKKKKSFLQPK-LEILARNKGISFVAIDQNRPL------------------------------ 68 (290)
Q Consensus 23 ~~~~~~~~VGy~l---~~kK~~~f~~~~-l~~~~~~~gi~~v~lD~~~pl------------------------------ 68 (290)
+..+++.+|+..+ |.-+.=|+..-. +.+..++.|++.++||.++.-
T Consensus 17 ~~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
T 3e5n_A 17 QGHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVA 96 (386)
T ss_dssp ----CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEE
T ss_pred hhhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhcccccccccccccccccee
Confidence 3445566777766 344444554433 555567788999888876531
Q ss_pred ----------------CCCCCceEEEecccchHHH-HHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCC
Q 022919 69 ----------------SDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDC 130 (290)
Q Consensus 69 ----------------~~Qgp~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~ 130 (290)
.....+|+|+-=+.+..-. ..+|.+.+.. ++.++ -++.++...+|+..+.+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~----- 170 (386)
T 3e5n_A 97 LLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMA-NLPFVGSGVLGSAVAMDKDMAKRVLRDA----- 170 (386)
T ss_dssp ECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHBHHHHHHHHHHT-----
T ss_pred eccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-----
Confidence 0122467776555443211 1356666554 56555 4578999999999999998854
Q ss_pred CCceecCceEEEccCC---CCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeee
Q 022919 131 NGKVRVPRQMVITKDS---LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFV 200 (290)
Q Consensus 131 ~~~i~~P~~v~i~~~~---~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFi 200 (290)
.|.+|++..++... .+..+.. ..+.||+|+||....| |..+.++.+++.|. ....++++||||
T Consensus 171 --GIp~p~~~~~~~~~~~~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I 243 (386)
T 3e5n_A 171 --RLAVAPFVCFDRHTAAHADVDTLI--AQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAV 243 (386)
T ss_dssp --TCCBCCEEEEEHHHHTTCCHHHHH--HHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECC
T ss_pred --CCCCCCEEEEeCcccchhhHHHHH--HhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 47789999885321 1222222 3468999999976655 45678899998875 235689999999
Q ss_pred ecCeeEEEEEEEcceE----EEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHH
Q 022919 201 NHGGILFKIYIIGETI----KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGL 274 (290)
Q Consensus 201 nH~gvl~KvYVvGd~v----~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~ 274 (290)
. |.=|-|.|+||.. .+.++-.-. +++++..--...... ...-+ +..++ .+.+.++|.
T Consensus 244 ~--G~E~~v~vl~~~~~~~~~~gei~~~~-----------~~~d~~~ky~~~~~~--~~~~P--a~l~~~~~~~i~~~a~ 306 (386)
T 3e5n_A 244 A--GREIECAVLGNAVPHASVCGEVVVHD-----------AFYSYATKYISEHGA--EIVIP--ADIDAQTQQRIQQIAV 306 (386)
T ss_dssp C--SEEEEEEEECSSSCEEEEEEEECC------------------------------CEESS--CSSCHHHHHHHHHHHH
T ss_pred C--CeEEEEEEEeCCCceEEEeEEEEeCC-----------cccchhcccCCCCCe--EEEEC--CCCCHHHHHHHHHHHH
Confidence 8 5888899998853 111221111 112221100000000 00000 11221 346889999
Q ss_pred HHHHHhCce-eeeeecC
Q 022919 275 QGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 275 ~LR~~LGL~-LfGfDli 290 (290)
.+-++||+. ++++|++
T Consensus 307 ~~~~aLg~~G~~~vDf~ 323 (386)
T 3e5n_A 307 QAYQALGCAGMARVDVF 323 (386)
T ss_dssp HHHHHHTCCSEEEEEEE
T ss_pred HHHHHhCCccEEEEEEE
Confidence 999999998 8888874
No 21
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.34 E-value=3.3e-06 Score=78.32 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=112.0
Q ss_pred CceEEEecc---cchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCC
Q 022919 73 PFDVVLHKL---SGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (290)
Q Consensus 73 p~DvILHKl---td~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (290)
.+|+|+--+ +++. ..++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|++..++....
T Consensus 90 ~~D~v~~~~~g~~ged--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~- 158 (343)
T 1e4e_A 90 HVDVAFSALHGKSGED--GSIQGLFELS-GIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDDR- 158 (343)
T ss_dssp ECSEEEECCCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTCC-
T ss_pred cCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechhh-
Confidence 466666433 3221 1234444332 56665 4688999999999999998864 366899998853322
Q ss_pred chhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce----EE
Q 022919 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET----IK 217 (290)
Q Consensus 149 ~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~----v~ 217 (290)
... ..+.||+|+||....| |..+.++.+++.|.. ...++++||||. |.-|-|.|+|+. +.
T Consensus 159 ~~~----~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~ 229 (343)
T 1e4e_A 159 PVA----ATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVG 229 (343)
T ss_dssp CCG----GGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEEC
T ss_pred hhh----hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEe
Confidence 211 4578999999977655 456888999987752 357899999997 789999999875 11
Q ss_pred E-EEecCCCCCchhhhhccceeeeeCCccCCCc---CCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 218 V-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 218 v-~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s---~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
. .++.. .+ .++.+.. +... .......-+ +..++ .+.+.++|..+-++||+. ++++|++
T Consensus 230 ~~~ei~~-~~----------~~~~~~~--k~~~~~~~g~~~~~~p--~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~ 294 (343)
T 1e4e_A 230 EVDQIRL-QY----------GIFRIHQ--EVEPEKGSENAVITVP--ADLSAEERGRIQETVKKIYKTLGCRGLARVDMF 294 (343)
T ss_dssp CCEEEEE-SS----------SCCCGGG--SSSGGGCCSSEEECSS--CSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeEEEee-CC----------CccCHhh--cccccCCCCCeeEEeC--CCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 1 11110 00 1112111 0000 000000000 11221 357899999999999996 8999974
No 22
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.32 E-value=5.6e-06 Score=78.73 Aligned_cols=193 Identities=7% Similarity=0.078 Sum_probs=111.5
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCC-C-
Q 022919 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-S- 148 (290)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-~- 148 (290)
.+|+|+-=+.+..= ...+|.+.+.. ++.++= ++.++...+|+..+.+.+++. .|.+|++..++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELL-NLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 58888766644210 01355555554 666664 477889999999999998854 477899998854321 1
Q ss_pred chhHHHhcCCccc-eEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeeeecCeeEEEEEEEcceEEEEE
Q 022919 149 IPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGETIKVVR 220 (290)
Q Consensus 149 ~~~~l~~agl~fP-~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~ 220 (290)
.... ....+.|| +|+||....| |..+.+|.+++.|. ....++++||||. |.=|-|.|+|+.-.
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHH-HHHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 1112 22468899 9999965433 67789999998774 3467899999998 78899999998610
Q ss_pred ecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 221 RFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 221 R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
+-+.+ .+.....++++|..--...... ...-+ +.+++ .+.+.++|..+-++||+. ++++|++
T Consensus 241 ~~~~~----~ei~~~~~~~d~~~ky~~g~~~--~~~~P--a~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~ 305 (372)
T 3tqt_A 241 KASLP----GEIIPHHDYYSYDAKYLDPNGA--TTTTS--VDLSESVTKQIQQIAIDAFKMVHCSGMARVDFF 305 (372)
T ss_dssp EECCC----EEEECC---------------C--EEESC--CCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eEeee----EEEecCCCccchhhcccCCCce--EEEeC--CCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEE
Confidence 00000 0000001122222110000000 00000 11221 357899999999999998 8888874
No 23
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.28 E-value=3.3e-06 Score=80.72 Aligned_cols=238 Identities=13% Similarity=0.125 Sum_probs=135.9
Q ss_pred cEEEEEEe---chhhhhhccchH-HHHHhhccceEEEEecCCCC------------------CCCC--------------
Q 022919 28 RLVVGYAL---TSKKKKSFLQPK-LEILARNKGISFVAIDQNRP------------------LSDQ-------------- 71 (290)
Q Consensus 28 ~~~VGy~l---~~kK~~~f~~~~-l~~~~~~~gi~~v~lD~~~p------------------l~~Q-------------- 71 (290)
+.+|+..+ |.-+.=|+..-. +.+..++.|++.++||.++. +...
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDI 116 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGG
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccccccccc
Confidence 34677777 444444554443 55556778999999998753 0010
Q ss_pred -CCceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCC
Q 022919 72 -GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (290)
Q Consensus 72 -gp~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (290)
..+|+++-=+-+..= ...+|.+.+.. ++.++- ++.++...+|+..+.+.+++.. .|.+|++..+.... +
T Consensus 117 ~~~~D~vf~~lhG~~GEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~G------~Ipvp~~~~~~~~~-~ 188 (383)
T 3k3p_A 117 YEEEAVVFPVLHGPMGEDGSIQGFLEVL-KMPYVGTNILSSSVAMDKITTNQVLESAT------TIPQVAYVALIEGE-P 188 (383)
T ss_dssp CCTTCEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHHC------CCCBCCEEEEETTS-C
T ss_pred ccCCCEEEEcCCCCCcchHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHhCC------CcCCCCEEEEeCcc-c
Confidence 146887765543210 01345555554 566654 5788999999999999988542 17789999885332 1
Q ss_pred chhHH--HhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcceEEEE
Q 022919 149 IPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVV 219 (290)
Q Consensus 149 ~~~~l--~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~v~v~ 219 (290)
..+.+ ....+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+||.-..+
T Consensus 189 ~~~~~~~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~ 263 (383)
T 3k3p_A 189 LESKLAEVEEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKT 263 (383)
T ss_dssp HHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEE
T ss_pred hhHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeE
Confidence 10111 124688999999966544 577888999887752 256899999998 7899999998742111
Q ss_pred EecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 220 ~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
+.+ .+.....+++.|..--...... ..-+ +..++ .+.+.++|..+-++||+. ++++|++
T Consensus 264 ---~~~----~ei~~~~~~~d~~~ky~~g~~~---~~~P--a~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 325 (383)
T 3k3p_A 264 ---TLP----GEIVKDVAFYDYEAKYIDNKIT---MAIP--AEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFF 325 (383)
T ss_dssp ---CCC----EEEC-----------------C---EESS--CCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ---Eee----EEEecCCCccchhhcccCCCee---EEec--CCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 100 0000001222222210000000 0000 11221 457889999999999997 8889874
No 24
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.26 E-value=1e-05 Score=75.65 Aligned_cols=206 Identities=12% Similarity=0.089 Sum_probs=117.4
Q ss_pred HHHHHhhccceEEEEecCCCCCC-CC--------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEeCC
Q 022919 47 KLEILARNKGISFVAIDQNRPLS-DQ--------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~-~Q--------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP 105 (290)
.+...+++.|++.+-+|.+..-. .+ ..+|+|+--..+. ..+ +.++.++. .+.+.-+
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~-~~~~l~~~-gi~~~~~ 91 (380)
T 3ax6_A 15 MMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHI-DVQ-TLKKLYNE-GYKIHPS 91 (380)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCS-CHH-HHHHHHHT-TCEESSC
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCC-CHH-HHHHHHHC-CCeECCC
Confidence 35555777899998888753211 11 1234443211111 111 22233333 3445688
Q ss_pred hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCC
Q 022919 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (290)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~ 185 (290)
+++++...|+..+.+.+++. .|.+|++..+++.. + ....+.||+|+||.... -.+..+.++.+++
T Consensus 92 ~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~----~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~ 156 (380)
T 3ax6_A 92 PYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDLE----S--DVREFGFPVVQKARKGG--YDGRGVFIIKNEK 156 (380)
T ss_dssp HHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSHH----H--HHHTTCSSEEEEESCCC-------EEEECSGG
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCHH----H--HHHhcCCCEEEEecCCC--CCCCCeEEECCHH
Confidence 88999999999998888754 35678888775211 1 22357899999997643 1357788999998
Q ss_pred CCCC-CCCCeeEEeeeecCeeEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCC
Q 022919 186 SLSE-LEPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 261 (290)
Q Consensus 186 gL~~-l~~P~V~QeFinH~gvl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~ 261 (290)
.|.. ++.++++||||+. |.-|-|.+++| .+.+... .-+... ...+.+. .+..+ ..+++
T Consensus 157 el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~--~~~~~~----~~~~~~~---~~~~p-----~~l~~--- 218 (380)
T 3ax6_A 157 DLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPV--VEMYFD----EDANICD---TVIAP-----ARIEE--- 218 (380)
T ss_dssp GGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEE--EEEC------------C---EEEES-----CSSCH---
T ss_pred HHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECC--eeeeec----ccCCeeE---EEECC-----CCCCH---
Confidence 8764 3478999999986 78888998875 3332211 001100 0001110 00000 00110
Q ss_pred CCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 262 GENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 262 e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.-.+.+.++|..+-++||+. .+++|++
T Consensus 219 --~~~~~~~~~a~~~~~~lg~~G~~~vd~~ 246 (380)
T 3ax6_A 219 --KYSKIAREIATSVVEALEGVGIFGIEMF 246 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred --HHHHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 01346788999999999995 8888874
No 25
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.22 E-value=9.6e-06 Score=74.86 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=113.8
Q ss_pred CCCceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCC
Q 022919 71 QGPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS 146 (290)
Q Consensus 71 Qgp~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~ 146 (290)
...+|+|+--+.+ +. ..++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|++..++...
T Consensus 74 ~~~~D~v~~~~hg~~ged--g~i~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~ 143 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGED--GTVQGFLELL-GKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGE 143 (322)
T ss_dssp CTTCSEEEEECCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTS
T ss_pred ccCCCEEEEeCCCCCCcc--HHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECch
Confidence 3468999866533 21 1233333332 46666 4589999999999999998854 36689998885332
Q ss_pred CCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce----
Q 022919 147 LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET---- 215 (290)
Q Consensus 147 ~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~---- 215 (290)
+. . . .+.||+|+||....| |..+.++.+++.|.. ...++++||||. |..-|-|.|+|+.
T Consensus 144 ~~---~--~-~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~~~~~ 213 (322)
T 2fb9_A 144 PP---V--V-PFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNVFGEA 213 (322)
T ss_dssp CC---C--C-CSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSSSCEE
T ss_pred hh---h--h-ccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCCCceE
Confidence 21 1 1 678999999976555 456888998887652 357899999997 2278999999984
Q ss_pred EEEEEecCCCCCchhhhhccceeeeeCCccCCCcCC--CcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA--DDADLDPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 216 v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~--~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
+.+.++.. . .+++.+..--...... ....+++. -.+.+.++|..+-++||+ .++++|++
T Consensus 214 ~~~~ei~~-~----------~~~~~~~~k~~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~ 275 (322)
T 2fb9_A 214 SPVGEVRY-E----------APFYDYETKYTPGRAELLIPAPLDPG-----TQETVQELALKAYKVLGVRGMARVDFF 275 (322)
T ss_dssp EEEEEEEE-E----------CCEEETTTEEECCEEEEESSCCCCTT-----HHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred eeeEEEee-C----------CCccCHHHcccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 22222211 0 0112221100000000 00111111 146789999999999999 78999974
No 26
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=98.17 E-value=5.1e-05 Score=70.46 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=112.0
Q ss_pred HHHHHhhccceEEEEecCCCCCCCC----------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Q----------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (290)
.+...|++.|++.+-+|.+..-... ..+|+|+==..+..... +.....+.-.+.+.-
T Consensus 15 ~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~g~ 93 (363)
T 4ffl_A 15 EAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPVLF 93 (363)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCBCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCccCC
Confidence 3566789999999999976532211 12343332211111222 222333334556778
Q ss_pred ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecC
Q 022919 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (290)
Q Consensus 105 P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~ 184 (290)
++++++...||..+-+.+++... .+|.+. .+.||+|+||.... .+..|.++.+.
T Consensus 94 ~~~a~~~~~dK~~~k~~l~~~gi-------p~~~~~----------------~ig~P~vvKp~~g~---g~~gv~~v~~~ 147 (363)
T 4ffl_A 94 DFEAYRISRDKKKSKDYFKSIGV-------PTPQDR----------------PSKPPYFVKPPCES---SSVGARIIYDD 147 (363)
T ss_dssp CHHHHHHHTSHHHHHHHHHHTTC-------CCCCBS----------------CSSSCEEEECSSCC---TTTTCEEEC--
T ss_pred CHHHHHHhhCHHHHHHHHHhcCC-------CCCCce----------------ecCCCEEEEECCCC---CCcCeEEeccH
Confidence 89999999999999999986543 334331 35799999996544 35779999999
Q ss_pred CCCCCCCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCC
Q 022919 185 FSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGEN 264 (290)
Q Consensus 185 ~gL~~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p 264 (290)
+.+.....++++|||+. |.-|=|.+++|.-.++.-+... +. ..+.. .... ....|
T Consensus 148 ~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~~~~~~~~~~~-----~~-------~~~~~-------~~~~----~~p~~ 202 (363)
T 4ffl_A 148 KDLEGLEPDTLVEEYVE--GEVVSLEVVGDGSHFAVVKETL-----VH-------IDETY-------DCHM----VTPLP 202 (363)
T ss_dssp ----CCCTTCEEEECCC--SEEEEEEEEEESSCEEECCCEE-----EE-------ECTTS-------CEEE----EEECC
T ss_pred HHhhhhccchhhhhhcc--CcEEEEEEEEECCeEEEEEEEE-----ec-------cCCcc-------ccee----ecchh
Confidence 99999999999999996 5667777776532222111000 00 00000 0000 01122
Q ss_pred CHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 265 SLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 265 ~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
..+.+.++|..+-++||+. .+++|++
T Consensus 203 ~~~~~~~~a~~~~~~l~~~G~~~vef~ 229 (363)
T 4ffl_A 203 ANPLFRQISHDLAANLPLKGIMDVEAI 229 (363)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCccceeeeeeE
Confidence 3456889999999999986 7777763
No 27
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.17 E-value=1.4e-06 Score=81.77 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=114.4
Q ss_pred CceEEEecccchHHH-HHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCC-CCc
Q 022919 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSI 149 (290)
Q Consensus 73 p~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~ 149 (290)
.+|+++-=+.+..-. ..+|.+.+.. ++..+ =++.++...+||..+-+.+++. .+.+|+++.+.... ...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFELA-GIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHHC-CCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 466665444332111 1355666654 56655 3577889999999999988854 46789998885321 111
Q ss_pred hhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCC-------CCCCCeeEEeeeecCeeEEEEEEEcceEEEEEec
Q 022919 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRF 222 (290)
Q Consensus 150 ~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~-------~l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~ 222 (290)
.+. ..+.+.||+|+||.. |. .|..|.+|.+++.|. ....++++|+||+ |.-+=|.|+|+....+...
T Consensus 169 ~~~-~~~~lg~PvvVKP~~--gg-~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~~~~v 242 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVR--AG-SSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELIVGRV 242 (357)
T ss_dssp HHH-HHHHCCSSEEEEETT--CS-SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEEECCC
T ss_pred HHH-HHHhcCCCEEEEECC--CC-CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCceEEEE
Confidence 111 134689999999954 43 367899999999885 3467899999995 7888889998764332111
Q ss_pred CCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 223 SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 223 Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.......+++.+..--...+..... + +.+++ .+.++++|..+-++||+. ++++|++
T Consensus 243 -------~~~~~~~~~~d~~~k~~~~~~~~~~---p--a~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~ 301 (357)
T 4fu0_A 243 -------DEIELSSGFFDYTEKYTLKSSKIYM---P--ARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMF 301 (357)
T ss_dssp -------EEEEECHHHHTSCSBCSSCCEEEES---S--CSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred -------EEEEcccccccccccccCCCceEec---C--CCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 0000000112221111000000000 0 11221 357889999999999995 8888864
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.15 E-value=9.6e-05 Score=70.17 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=94.4
Q ss_pred HHHHhhccceEEEEecCCCC-CCCC-CCceEEEe-cc-cch-HHHHHHHHHHHhCC-CeEE--e----------------
Q 022919 48 LEILARNKGISFVAIDQNRP-LSDQ-GPFDVVLH-KL-SGM-EWCKIIEDYRQKHP-EVTI--L---------------- 103 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~p-l~~Q-gp~DvILH-Kl-td~-~~~~~l~~y~~~hP-~v~V--i---------------- 103 (290)
+.+.|++.|++.+-+|-+.. ...+ .-.|-.++ .. .|. .+.+.+.+..++++ +.++ -
T Consensus 20 i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lgl 99 (425)
T 3vot_A 20 IFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNL 99 (425)
T ss_dssp HHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCC
Confidence 55678999999999875432 2222 23454443 12 232 24455555544433 2111 1
Q ss_pred --CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEE
Q 022919 104 --DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (290)
Q Consensus 104 --DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malv 181 (290)
-++++++...|+..|-+.+++. .|.+|++..+++. +.+..+.+.||+|+||.... .|..+.++
T Consensus 100 pg~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-----~~~~~~~~g~P~vvKp~~g~---gs~Gv~~v 164 (425)
T 3vot_A 100 PGLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-----ADLENRKLSYPLVVKPVNGF---SSQGVVRV 164 (425)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-----GGGTTCCCCSSEEEEESCC--------CEEE
T ss_pred CCCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-----HHHHHhhcCCcEEEEECCCC---CCCCceEe
Confidence 2567888999999998888754 3667999988532 12234678999999996533 46789999
Q ss_pred ecCCCCCC------------------CCCCeeEEeeeecCeeEEEEEEEcceEEE
Q 022919 182 YDRFSLSE------------------LEPPMLLQEFVNHGGILFKIYIIGETIKV 218 (290)
Q Consensus 182 f~~~gL~~------------------l~~P~V~QeFinH~gvl~KvYVvGd~v~v 218 (290)
.+++.|.+ -..++++||||+-.-+-.=+++.++.+.+
T Consensus 165 ~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~~ 219 (425)
T 3vot_A 165 DDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVHV 219 (425)
T ss_dssp CSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEEE
T ss_pred chHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEEE
Confidence 99987742 24689999999743333333444555443
No 29
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.12 E-value=1.5e-05 Score=75.50 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=89.7
Q ss_pred CceEEEecccc---hHHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCC
Q 022919 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (290)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (290)
.+|+|+-=+.+ +. ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|+++.++.....
T Consensus 109 ~~D~vfp~lhG~~gEd--g~iq~lle~~-gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGED--GTIQGLLELA-GVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEEC--CHHHHHHHHH-TCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCcc--HHHHHHHHHc-CCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 47887655532 21 1244444443 5777766 78999999999999998854 4778999998643321
Q ss_pred -chhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce
Q 022919 149 -IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 149 -~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
.... ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||. |.-|-|.|+|+.
T Consensus 179 ~~~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 179 LHRQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp CCHHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred hhHHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 1222 34578999999966555 566788999998752 367899999999 788999999874
No 30
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.11 E-value=4.4e-05 Score=71.79 Aligned_cols=186 Identities=12% Similarity=0.174 Sum_probs=112.8
Q ss_pred CCceEEEecccc---hHHHHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCC-
Q 022919 72 GPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS- 146 (290)
Q Consensus 72 gp~DvILHKltd---~~~~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~- 146 (290)
..+|+|+==+.+ +. ..+|.+.+.. ++.++- ++.++...+|+..+.+.+++. .|.+|++..++...
T Consensus 97 ~~~D~vf~~lhG~~gEd--g~iq~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 166 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGED--GSLQGMLRVA-NLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNR 166 (364)
T ss_dssp CCCSEEEECCCSTTTTS--SHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTG
T ss_pred CCCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEcccc
Confidence 357887655433 32 1355565554 566665 478999999999999998854 47789999885332
Q ss_pred --CCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeEEEEEEEcce--
Q 022919 147 --LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET-- 215 (290)
Q Consensus 147 --~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl~KvYVvGd~-- 215 (290)
.++.+.. ..+.||+|+||....| |..+.++.+++.|.. ...++++||||. |.=|=|.|+||.
T Consensus 167 ~~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~ 239 (364)
T 3i12_A 167 HAFSFAEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNP 239 (364)
T ss_dssp GGCCHHHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSC
T ss_pred chhhHHHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCc
Confidence 1222222 3467999999975544 466788999887752 256899999998 478888999875
Q ss_pred --EEEEE-ecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeec
Q 022919 216 --IKVVR-RFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTL 289 (290)
Q Consensus 216 --v~v~~-R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDl 289 (290)
..+.+ ++. . +.+.+..--...... . ..-+ +..++ .+.+.++|..+-++||+. ++++|+
T Consensus 240 ~~~~~~ei~~~-~-----------~~~~~~~ky~~~~~~-~-~~~P--a~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 303 (364)
T 3i12_A 240 QASTCGEIVLN-S-----------EFYAYDTKYIDDNGA-Q-VVVP--AQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 (364)
T ss_dssp EEEEEEEEECC-T-----------TCC--TTTTSGGGGC-E-EESS--CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEeeeEEEecC-C-----------CccCHHHcccCCCce-E-EEeC--CCCCHHHHHHHHHHHHHHHHHhCCceEEEEEE
Confidence 22222 111 0 112221110000000 0 0000 11111 347889999999999995 888887
Q ss_pred C
Q 022919 290 I 290 (290)
Q Consensus 290 i 290 (290)
+
T Consensus 304 ~ 304 (364)
T 3i12_A 304 F 304 (364)
T ss_dssp E
T ss_pred E
Confidence 4
No 31
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.10 E-value=0.00011 Score=69.48 Aligned_cols=188 Identities=10% Similarity=0.018 Sum_probs=112.3
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCch
Q 022919 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (290)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (290)
.+|+|+--+.+..- ...++.+.+.. ++.++ -++.++...+|+..+.+.+++. .|.+|++..++.... .
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~--~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFY-RIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNR--A 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHT-TCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTG--G
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCch--H
Confidence 35666544433210 01245555544 67666 6689999999999999998864 366789888853321 0
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC-------CCCCeeEEeeeecCeeE---EEEEEEcceEEEE-
Q 022919 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGIL---FKIYIIGETIKVV- 219 (290)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~-------l~~P~V~QeFinH~gvl---~KvYVvGd~v~v~- 219 (290)
+..+...+.||+|+||....| |-.+.++.+++.|.. ...++++||||.. ..- +-+.| ++.+.+.
T Consensus 177 ~~~~~~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G-~~E~svi~v~v-~g~~~~~~ 251 (367)
T 2pvp_A 177 NALDLMNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQG-VKEYNLAGCKI-KKDFCFSY 251 (367)
T ss_dssp GHHHHCCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTT-CEEEEEEEEEE-TTEEEEEE
T ss_pred HHHHHhccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCC-CceeeEEEEEE-CCEEEEEE
Confidence 111134688999999966554 456889999988752 3578999999973 144 66777 7753322
Q ss_pred EecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--HHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENS--LPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 220 ~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~--~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.+-. + . .+++.|.. +..... ....-+ +.+++ .+.+.++|..+-++||+. ++++|++
T Consensus 252 ~ei~-~---~------~~~~d~~~--ky~~g~-~~~~~P--a~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 310 (367)
T 2pvp_A 252 IEEP-N---K------QEFLDFKQ--KYLDFS-RNKAPK--ASLSNALEEQLKENFKKLYSDLFDGAIIRCDFF 310 (367)
T ss_dssp EEET-T---T------TEEECCCC--SSCCSC-CCSCCC--CCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEE
T ss_pred EEEe-c---C------CceEcccc--cccCCC-eeEEec--CCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Confidence 1211 1 1 12333321 111000 000000 11221 357899999999999986 8899874
No 32
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.08 E-value=6.8e-05 Score=71.01 Aligned_cols=148 Identities=10% Similarity=0.049 Sum_probs=93.7
Q ss_pred HHHHhhccceEEEEecCCCCCCCCC-CceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcc
Q 022919 48 LEILARNKGISFVAIDQNRPLSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN 126 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~~Qg-p~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~ 126 (290)
+..-|++.|++++..|.+.|-.-.+ ..|+|.--..... .+.++...+.. .|.-++++++...||..+-+.++++
T Consensus 16 ~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l~~~~---~v~p~~~a~~~~~DK~~~k~~l~~~- 90 (355)
T 3eth_A 16 LRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQLARH---PAFVNRDVFPIIADRLTQKQLFDKL- 90 (355)
T ss_dssp HHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHHHHTC---TTBTTTTHHHHHHSHHHHHHHHHHT-
T ss_pred HHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHHHhcC---CcCCCHHHHHHhcCHHHHHHHHHHC-
Confidence 5566788999994333332211111 4566654432221 12233333332 5788899999999999999998764
Q ss_pred cCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEec--CCCCCC--CCCCeeEEeeeec
Q 022919 127 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPPMLLQEFVNH 202 (290)
Q Consensus 127 ~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~--~~gL~~--l~~P~V~QeFinH 202 (290)
.|.+|++..+++ .+++.+..+ .+.||+|+||.. |.+.++.+.++.+ ++.|.. +. ++++|+||+.
T Consensus 91 ------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~--~G~~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~~ 158 (355)
T 3eth_A 91 ------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRT--GGYDGRGQWRLRANETEQLPAECYG-ECIVEQGINF 158 (355)
T ss_dssp ------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESS--SCCTTTTEEEEETTCGGGSCGGGTT-TEEEEECCCC
T ss_pred ------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecC--CCCCCCeEEEEcCCCHHHHHHHhhC-CEEEEEccCC
Confidence 467889988852 223333333 467999999954 3234688999999 888764 34 7999999995
Q ss_pred CeeEEEEEEEc
Q 022919 203 GGILFKIYIIG 213 (290)
Q Consensus 203 ~gvl~KvYVvG 213 (290)
+ .=+=|-+++
T Consensus 159 ~-~Eisv~v~~ 168 (355)
T 3eth_A 159 S-GEVSLVGAR 168 (355)
T ss_dssp S-EEEEEEEEE
T ss_pred C-cEEEEEEEE
Confidence 3 444555553
No 33
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.06 E-value=1e-05 Score=75.35 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=94.1
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeecccc-CCCCceeEE
Q 022919 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELF 179 (290)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~-Gs~~SH~Ma 179 (290)
.+--++++++...|+..+.+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||.... | +..+.
T Consensus 83 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~~~~---g~Gv~ 149 (369)
T 3aw8_A 83 PLYPPAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEG--LKRVGLPALLKTRRGGYD---GKGQA 149 (369)
T ss_dssp CBSSCHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHH--HTTTCSSEEEEECCC---------EE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHH--HHHcCCCEEEEEcCCCCC---cceEE
Confidence 5667888999999999998888764 356788888752 1111111 2357899999997755 5 46788
Q ss_pred EEecCCCCC----CC-CCCeeEEeeeecCeeEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCC
Q 022919 180 LAYDRFSLS----EL-EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 251 (290)
Q Consensus 180 lvf~~~gL~----~l-~~P~V~QeFinH~gvl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~ 251 (290)
++.+++.|. .+ ..++++||||.. |.-|-|.+++| .+.+. +..-+.. ..+.+.. +..++
T Consensus 150 ~v~~~~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~--~~~~~~~------~~~~~~~---~~~p~-- 215 (369)
T 3aw8_A 150 LVRTEEEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFY--PLVENRH------WGGILRL---SLAPA-- 215 (369)
T ss_dssp EECSHHHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEEC--CCEEEEE------ETTEEEE---EEESC--
T ss_pred EECCHHHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEE--CCeeeee------eCCEEEE---EECCC--
Confidence 898887654 23 468999999986 67788888875 33321 1110110 0111110 00000
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 252 DDADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 252 ~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
..+++ .-.+.+.++|..+-++||++ .+++|++
T Consensus 216 --~~l~~-----~~~~~~~~~a~~~~~~lg~~G~~~vd~~ 248 (369)
T 3aw8_A 216 --PGASE-----ALQKKAEAYALRAMEALDYVGVLALEFF 248 (369)
T ss_dssp --TTCCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred --CCCCH-----HHHHHHHHHHHHHHHHCCCeeEEEEEEE
Confidence 00110 01345788889999999997 8888864
No 34
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.97 E-value=1e-05 Score=77.82 Aligned_cols=208 Identities=13% Similarity=0.121 Sum_probs=119.4
Q ss_pred hHHHHHhhccceEEEEecCCCCC-----CC---CC-------------CceEEEecccchHHH-HHHHHHHHhCCCeEEe
Q 022919 46 PKLEILARNKGISFVAIDQNRPL-----SD---QG-------------PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL 103 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD~~~pl-----~~---Qg-------------p~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi 103 (290)
..+...|++.|++++-+|.+..- .+ .+ ..|+|+ ++.+.. ..+-++.++. ..+.
T Consensus 48 ~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~---~~~e~~~~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 48 RMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVS---TEFENVPAASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEE---ECCTTCCHHHHHHHHTT--SEES
T ss_pred HHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEE---EccCcCCHHHHHHHHcc--CCcC
Confidence 34666788899999999865321 00 01 245555 221111 1222333444 4777
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHh--cCCccceEeeeccccCCCCceeEEEE
Q 022919 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFE--AGLKLPLVAKPLVVDGSAKSHELFLA 181 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~--agl~fP~I~Kp~vA~Gs~~SH~Malv 181 (290)
-++++++...||..+-+.++++ .|.+|++..+++. +++.+...+ ..+ ||+|+||.. .| ..+..+.++
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~~-~e~~~~~~~~~~~~-~P~VvKp~~-~g-~~G~Gv~~v 191 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIESA-AALAALDDAALDAV-LPGILKTAR-LG-YDGKGQVRV 191 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECSH-HHHHTSCHHHHHTT-CSEEEEESS-SC-CTTTTEEEE
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHHHHHhhcccc-CCEEEEecC-CC-CCCCceEEE
Confidence 8899999999999999998764 4678889888521 111111111 117 999999951 23 345789999
Q ss_pred ecCCCCCC----C-CCCeeEEeeeecCeeEEEEEEEcc---eEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCc
Q 022919 182 YDRFSLSE----L-EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 253 (290)
Q Consensus 182 f~~~gL~~----l-~~P~V~QeFinH~gvl~KvYVvGd---~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~ 253 (290)
.+++.|.. + ..++++||||+. +.=+=|.+++| .+.+. |-.-|.. ..+.+.. +-.++
T Consensus 192 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~--~~~e~~~------~~g~~~~---~~~Pa---- 255 (419)
T 4e4t_A 192 STAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF--PLAQNVH------HNGILAL---TIVPA---- 255 (419)
T ss_dssp CSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC--CCEEEEE------ETTEEEE---EEESC----
T ss_pred CCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE--eCeEEEe------eCCeEEE---EEcCC----
Confidence 99887642 2 468999999986 45566666643 12110 1000000 0111110 00000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 254 ADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 254 ~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
..+++. -.+.+.++|+.+-++||+. +|++|++
T Consensus 256 ~~l~~~-----~~~~~~~~a~~i~~~lg~~G~~~vE~~ 288 (419)
T 4e4t_A 256 PAADTA-----RVEEAQQAAVRIADTLGYVGVLCVEFF 288 (419)
T ss_dssp TTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHCCCeeEEEEEEE
Confidence 001100 1356888999999999996 8888864
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.96 E-value=5.4e-05 Score=70.64 Aligned_cols=208 Identities=10% Similarity=0.118 Sum_probs=116.0
Q ss_pred HHHHHhhccceEEEEecCCCCCCCC-----------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022919 47 KLEILARNKGISFVAIDQNRPLSDQ-----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~~Q-----------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (290)
.+...+++.|+..+.+|.+..-... ..+|+|+-=.-+. ..+.+ +..++. .+.+.
T Consensus 25 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~-~~l~~~-gi~~~ 101 (391)
T 1kjq_A 25 EVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDML-IQLEEE-GLNVV 101 (391)
T ss_dssp HHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHH-HHHHHT-TCEES
T ss_pred HHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHH-HHHHhC-CCCcC
Confidence 4666778899999999875321100 1345444322111 11112 222332 34456
Q ss_pred CChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 022919 104 DPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf 182 (290)
-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+... .+.||+|+||.... .+..+.++.
T Consensus 102 ~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v~ 168 (391)
T 1kjq_A 102 PCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSS---SGKGQTFIR 168 (391)
T ss_dssp SCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCEEEC
T ss_pred CCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCCeEEEC
Confidence 6789999999999888887 533 467788888752 222222222 46799999997543 457788999
Q ss_pred cCCCCCC-----------CCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCC
Q 022919 183 DRFSLSE-----------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 251 (290)
Q Consensus 183 ~~~gL~~-----------l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~ 251 (290)
+++.|.. -..++++||||.. |.-|-|.++++.-.++.-+...+.... ......+ . +
T Consensus 169 ~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~~~~~~~~~~--~~~~~~~-----~-p---- 235 (391)
T 1kjq_A 169 SAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFCAPVGHRQED--GDYRESW-----Q-P---- 235 (391)
T ss_dssp SGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEECCCEEEEEET--TEEEEEE-----E-C----
T ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEccCcceEEEC--CEEEEEE-----e-C----
Confidence 9887642 1468999999985 556666666431111111111111000 0000000 0 0
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 252 DDADLDPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 252 ~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
..+++ .-.+.+.++|..+-++||+ -.+++|++
T Consensus 236 --~~l~~-----~~~~~~~~~a~~~~~~lg~~G~~~ve~~ 268 (391)
T 1kjq_A 236 --QQMSP-----LALERAQEIARKVVLALGGYGLFGVELF 268 (391)
T ss_dssp --CCCCH-----HHHHHHHHHHHHHHHHHCSSEEEEEEEE
T ss_pred --CCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 01110 0134678899999999998 67888864
No 36
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.76 E-value=6.5e-05 Score=69.68 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=77.7
Q ss_pred HHHHHhhccceEEEEecCCCCCC-----CC-----------CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHh
Q 022919 47 KLEILARNKGISFVAIDQNRPLS-----DQ-----------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 110 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl~-----~Q-----------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~ 110 (290)
.+...+++.|++.+.+|.+.... +. ..+|+|+--..+... ..++ +.+. .+.-++++++
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~~-~l~~----~~g~~~~~~~ 88 (365)
T 2z04_A 15 MTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVLE-KCES----KLIPNPQALY 88 (365)
T ss_dssp HHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHHH-HHTT----TBSSCTHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHHH-HHhh----hcCCCHHHHH
Confidence 46667788999999999764321 10 136777754433221 2222 2222 5667789999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeecccc-CCCCceeEEEEecCCCCCC
Q 022919 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDRFSLSE 189 (290)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~-Gs~~SH~Malvf~~~gL~~ 189 (290)
...|+..+.+.+++. .|.+|++..++ .+++.+.+ ..+.||+|+||.... |+ ..+.++.+++.|..
T Consensus 89 ~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~~--~~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~~ 154 (365)
T 2z04_A 89 VKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDAL--KSFKLPVVIKAEKLGYDG---KGQYRIKKLEDANQ 154 (365)
T ss_dssp HHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC-----------------------
T ss_pred HhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHHH--HhcCCCEEEEEcCCCcCC---CCeEEECCHHHHHH
Confidence 999999999998753 36678888765 22222222 246799999997755 54 56788888887753
Q ss_pred C------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 190 L------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 190 l------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
. ..++++||||.. |.-|-|.+++|
T Consensus 155 ~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 155 VVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp ----------CEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 2 368999999986 67788888864
No 37
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.70 E-value=0.00029 Score=64.76 Aligned_cols=163 Identities=14% Similarity=0.216 Sum_probs=100.2
Q ss_pred CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCch
Q 022919 72 GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (290)
Q Consensus 72 gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (290)
.++|+++-=.++++ ..+.+.+..+. +...+.-++++++...|+..+.+.+++ .+.+|++..
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec---------
Confidence 36776544444332 33344444444 347889999999999999999999874 356777763
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCCCCCCeeEEeeeecCeeEEEEEEEc-ceEEEEEec-CCCCCc
Q 022919 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIG-ETIKVVRRF-SLPNVS 228 (290)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~l~~P~V~QeFinH~gvl~KvYVvG-d~v~v~~R~-Slpn~~ 228 (290)
..+.||+|+||....|+ ..+.++.+ ...++++||||. |.-|=|.+++ +.+..+.+. ...+
T Consensus 130 -----~~~~~P~vvKP~~g~gs---~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~~~~~-- 191 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACAG---EGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNEQIIN-- 191 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEEEEEE--
T ss_pred -----ccCCCCEEEEeCCCCCC---CCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEeeEecc--
Confidence 25789999999776554 55556655 567899999999 6788888885 444333221 0000
Q ss_pred hhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-Cc-eeeeeecC
Q 022919 229 KRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAI-GW-AFGCLTLI 290 (290)
Q Consensus 229 ~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~L-GL-~LfGfDli 290 (290)
.+.+.....+ ..++ ..-.+.+.++|+.+-++| |+ .++|+|+|
T Consensus 192 ---------~~~~~g~~~p------~~l~-----~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~ 235 (305)
T 3df7_A 192 ---------NFRYAGAVVP------ARIS-----DEVKREVVEEAVRAVECVEGLNGYVGVDIV 235 (305)
T ss_dssp ---------TTEEEEEEES------CCCC-----HHHHHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred ---------Cceecccccc------CCCC-----HHHHHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 0000000000 0111 011367899999999999 86 47889975
No 38
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.68 E-value=3.4e-05 Score=72.45 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=114.4
Q ss_pred HHHHHhhccceEEEEecCCC---------------CCC---------CCCCceEEEecccchHHHHHHHHHHHhCCCeEE
Q 022919 47 KLEILARNKGISFVAIDQNR---------------PLS---------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~---------------pl~---------~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~V 102 (290)
.+...|++.|+..+-+|... ++. .+..+|.|+--..+... ..+.+..++. .+ +
T Consensus 21 ~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~-~~~a~~~~~~-gl-~ 97 (403)
T 4dim_A 21 GLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI-VSLARICDKE-NL-V 97 (403)
T ss_dssp HHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH-HHHHHHHHHH-TC-S
T ss_pred HHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH-HHHHHHHHHc-Cc-C
Confidence 36666788888888887522 111 02346666632222211 1222222222 12 2
Q ss_pred eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 022919 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (290)
Q Consensus 103 iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf 182 (290)
--++++++.+.|+..+.+.+++. .|.+|++..++ +.+++.+. ...+.||+|+||....| +..|.++.
T Consensus 98 g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~g~g---g~Gv~~v~ 164 (403)
T 4dim_A 98 GLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNA--LENLKLPVIVKATDLQG---SKGIYIAK 164 (403)
T ss_dssp SCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHH--HHTSCSSEEEECSCC--------CEEES
T ss_pred CCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHH--HhcCCCCEEEEECCCCC---CCCEEEEC
Confidence 45788999999999999988864 35678887664 21112122 23678999999976544 57889999
Q ss_pred cCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCc
Q 022919 183 DRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 253 (290)
Q Consensus 183 ~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~ 253 (290)
+++.|.. -..++++||||.....-.=+++.+..+.+..... +..... .. +. ..-.+. +
T Consensus 165 ~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~--~~~~~~--~~-~~-~~~~~~-p------ 231 (403)
T 4dim_A 165 KEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHG--DETYMS--HT-AV-PVGHYV-P------ 231 (403)
T ss_dssp SHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEE--EEEEES--SS-EE-EEEEEE-S------
T ss_pred CHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEec--ceeccC--CC-Cc-ceeEEe-C------
Confidence 9887752 1468999999995433333444455555432100 000000 00 00 000000 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCce--eeeeecC
Q 022919 254 ADLDPGIAGENSLPALCWKGLQGNSAIGWA--FGCLTLI 290 (290)
Q Consensus 254 ~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~--LfGfDli 290 (290)
..+++ .-.+.+.++|..+-++||+. .|++|++
T Consensus 232 ~~l~~-----~~~~~l~~~a~~~~~~lg~~gg~~~ve~~ 265 (403)
T 4dim_A 232 LDVKD-----DIIEKTKTEVKKAIKALGLNNCAVNVDMI 265 (403)
T ss_dssp CCSCH-----HHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred CCCCH-----HHHHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 01110 01456788999999999997 6888874
No 39
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.64 E-value=0.00019 Score=65.26 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=80.0
Q ss_pred Ce-EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v-~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+ ++.-++++++...|+..+.+.+++.. |.+|++.... +++.+.+....+.||+|+||....| |..
T Consensus 98 g~~~~~~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~g---~~g 164 (331)
T 2pn1_A 98 GVTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGSA---SIE 164 (331)
T ss_dssp TCEECCCCHHHHHHHHBHHHHHHHHHHHT-------CCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC--------
T ss_pred CcEEecCCHHHHHHhhCHHHHHHHHHHcC-------CCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCCC---CCC
Confidence 44 34577889999999999999888653 5567765321 1111222224688999999977555 577
Q ss_pred EEEEecCCCCCCC---CCCeeEEeeeecCeeEEEEEEEcc-----eEEEEEecCCCCCchhhhhccceeeeeCCccCCCc
Q 022919 178 LFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIGE-----TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA 249 (290)
Q Consensus 178 Malvf~~~gL~~l---~~P~V~QeFinH~gvl~KvYVvGd-----~v~v~~R~Slpn~~~~~~~~~~~~~~f~~vS~~~s 249 (290)
+.++.+++.|... ..++++||||+. .-|-|.+++| .+.+..+..+. .. .+.... +
T Consensus 165 v~~v~~~~el~~~~~~~~~~lvee~i~G--~e~~v~~~~d~~~G~~~~~~~~~~~~--~~------~g~~~~---~---- 227 (331)
T 2pn1_A 165 VRRVETVEEVEQLFSKNTDLIVQELLVG--QELGVDAYVDLISGKVTSIFIKEKLT--MR------AGETDK---S---- 227 (331)
T ss_dssp ------------------CEEEEECCCS--EEEEEEEEECTTTCCEEEEEEEEEEE--EE------TTEEEE---E----
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecCCC--cEEEEEEEEecCCCeEEEEEEEEEEE--ec------CCceeE---e----
Confidence 8899999887643 368999999983 6777777753 34333332110 00 010000 0
Q ss_pred CCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 250 SADDADLDPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 250 ~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
..+..+.+.++|+.+-++||+ -.+++|++
T Consensus 228 ------------~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~ 257 (331)
T 2pn1_A 228 ------------RSVLRDDVFELVEHVLDGSGLVGPLDFDLF 257 (331)
T ss_dssp ------------EEECCHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred ------------EEeccHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 001134578888999999999 57788864
No 40
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.57 E-value=0.00036 Score=74.77 Aligned_cols=158 Identities=17% Similarity=0.272 Sum_probs=87.2
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++...||..+.+.++++. |.+|++..+.+ .++..+.. ..+.||+|+||....| +..
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~G-------Ip~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~g---G~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERLK-------LKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVLG---GRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHHT-------CCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHcC-------cCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCCC---CCC
Confidence 45555 56889999999999998888653 56788887742 11122222 2467999999977555 568
Q ss_pred EEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc--eEEEE-EecCCC--CCchhhhhccceeeeeCC
Q 022919 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE--TIKVV-RRFSLP--NVSKRELAKVVSVFRFPR 243 (290)
Q Consensus 178 Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd--~v~v~-~R~Slp--n~~~~~~~~~~~~~~f~~ 243 (290)
|.++.+++.|.. -..|+++|+||+.. .=|=|-+++| .+.+. ...-+. ++..++ ....++
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~~P- 797 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACSLP- 797 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEEES-
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEEec-
Confidence 999999987642 13589999999865 2344445543 33221 100010 111110 000000
Q ss_pred ccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 244 VSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 244 vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
...+++ ...+.+.++|+.+-++||+ -++++|++
T Consensus 798 ---------~~~l~~-----~~~~~i~~~a~~i~~aLg~~G~~~vdf~ 831 (1073)
T 1a9x_A 798 ---------AYTLSQ-----EIQDVMRQQVQKLAFELQVRGLMNVQFA 831 (1073)
T ss_dssp ---------CSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ---------CCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 001110 0145688899999999999 78888864
No 41
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.53 E-value=0.00018 Score=68.38 Aligned_cols=150 Identities=13% Similarity=0.194 Sum_probs=89.8
Q ss_pred HHHHHhhccceEEEEecCCCCC--------------CC---------CCCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022919 47 KLEILARNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~pl--------------~~---------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (290)
.+...+++.|++++.+|.+..- .+ +..+|+|+--.-+.. .+.+ +..++. .+.+.
T Consensus 33 ~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~-~~l~~~-gi~~~ 109 (433)
T 2dwc_A 33 EIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDAL-FEFEKD-GYFVV 109 (433)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHH-HHHHHT-TCCBS
T ss_pred HHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHH-HHHHhc-CCeeC
Confidence 3566678899999999875321 00 124565554332111 1222 222332 34456
Q ss_pred CChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 022919 104 DPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf 182 (290)
-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+... .+.||+|+||.... .+..+.++.
T Consensus 110 ~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v~ 176 (433)
T 2dwc_A 110 PNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSS---SGKGSYFVK 176 (433)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------EEEC
T ss_pred CCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCc---CCCCeEEEC
Confidence 6789999999999988887 643 466788888752 222222222 36799999996433 467889999
Q ss_pred cCCCCC----CC-------CCCeeEEeeeecCeeEEEEEEEc
Q 022919 183 DRFSLS----EL-------EPPMLLQEFVNHGGILFKIYIIG 213 (290)
Q Consensus 183 ~~~gL~----~l-------~~P~V~QeFinH~gvl~KvYVvG 213 (290)
+++.|. .+ ..++++||||+. |.-|-|.+++
T Consensus 177 ~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 177 GPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp SGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 988764 11 468999999985 5566676664
No 42
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.52 E-value=0.00024 Score=76.05 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=121.1
Q ss_pred HHHHhhccceEEEEecCCCCCC-------C-----------------CCCceEEEecccchH---HHHHHHH--HHHhCC
Q 022919 48 LEILARNKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGME---WCKIIED--YRQKHP 98 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~-------~-----------------Qgp~DvILHKltd~~---~~~~l~~--y~~~hP 98 (290)
+...+++.|++.+.+|.+.... + ...+|+|+==+-... ....+.+ ..+++
T Consensus 33 ~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~- 111 (1073)
T 1a9x_A 33 ACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF- 111 (1073)
T ss_dssp HHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHH-
T ss_pred HHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHc-
Confidence 6667788999999999764321 0 013344442221111 1111211 22332
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
++.++ -++++++...||..+.+.++++ .+.+|++..+++ .++..+.. ..+.||+|+||....|+ ..
T Consensus 112 gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~--~~ig~PvVvKp~~~~Gg---~G 178 (1073)
T 1a9x_A 112 GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVA--ADVGFPCIIRPSFTMGG---SG 178 (1073)
T ss_dssp TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHH--HHHCSSEEEEETTCCTT---TT
T ss_pred CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCCCC---Cc
Confidence 46666 7789999999999999988864 366788887752 11122222 24679999999876664 56
Q ss_pred EEEEecCCCCCCC---------CCCeeEEeeeecCeeEEEEEEEcce----EEEEEecCCCCCchhhhhccceeeeeCCc
Q 022919 178 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRV 244 (290)
Q Consensus 178 Malvf~~~gL~~l---------~~P~V~QeFinH~gvl~KvYVvGd~----v~v~~R~Slpn~~~~~~~~~~~~~~f~~v 244 (290)
+.++.+++.|... ..++++||||.. ..=|-|-|++|. +.+ +++-|++...... + +++
T Consensus 179 v~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d~~g~~v~~---~~~e~~dp~~v~~--g----~s~ 248 (1073)
T 1a9x_A 179 GGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRDKNDNCIIV---CSIENFDAMGIHT--G----DSI 248 (1073)
T ss_dssp CEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEECTTCCEEEE---EEEEESSCTTSCG--G----GSC
T ss_pred eEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEeCCCCEEEE---EEEecccCCcccc--C----cEE
Confidence 7789998876421 347999999984 356667777763 222 1111211110000 0 000
Q ss_pred cCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce--eeeeecC
Q 022919 245 SSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA--FGCLTLI 290 (290)
Q Consensus 245 S~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~--LfGfDli 290 (290)
.-.++ ..+++ .....+.++|..+-++||+. .+++|++
T Consensus 249 ~~~Pa----~~l~~-----~~~~~l~~~a~~i~~~lg~~~G~~~vdf~ 287 (1073)
T 1a9x_A 249 TVAPA----QTLTD-----KEYQIMRNASMAVLREIGVETGGSNVQFA 287 (1073)
T ss_dssp EEESC----CSCCH-----HHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred EEecC----CCCCH-----HHHHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 00000 00110 01356889999999999998 8888864
No 43
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.36 E-value=0.00049 Score=66.20 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=76.8
Q ss_pred HHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeec
Q 022919 89 IIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 167 (290)
Q Consensus 89 ~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~ 167 (290)
.+.+..++. .+.++ -+.++++...|+..+.+.+++. .|.+|++..++ +.++..+.+. .+.||+|+||.
T Consensus 82 ~~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~-~~~ea~~~~~--~~g~PvVvKp~ 150 (431)
T 3mjf_A 82 GVVDAFRAA-GLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFT-DVEAALAYVR--QKGAPIVIKAD 150 (431)
T ss_dssp THHHHHHHT-TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEES-CHHHHHHHHH--HHCSSEEEEES
T ss_pred HHHHHHHhc-CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHHH--HcCCeEEEEEC
Confidence 344444443 56666 7889999999999999998754 46679998885 2222222222 46799999996
Q ss_pred cccCCCCceeEEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 168 VVDGSAKSHELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 168 vA~Gs~~SH~Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
... .+..+.++.+++.+.. -..++++|||+. |.-|=|.+++|
T Consensus 151 ~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 151 GLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp SSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEE
T ss_pred CCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEc
Confidence 544 4677889998886631 135899999999 57777777755
No 44
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.34 E-value=0.00041 Score=65.89 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=70.3
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEE
Q 022919 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (290)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mal 180 (290)
++--++++++...||..+.+.+++. .|.+|++..+++ .++..+. ...+.||+|+||....| +..|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~--~~~~g~PvvvKp~~~~g---g~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREK--IKKFSPPYVIKADGLAR---GKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HTTSCSSEEEEESSCCS---SCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCCEEE
Confidence 4456788999999999999998864 366788887752 1112111 13578999999976544 577899
Q ss_pred EecCCCCCC-----------CC--CCeeEEeeeecCeeEEEEEEEcc
Q 022919 181 AYDRFSLSE-----------LE--PPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 181 vf~~~gL~~-----------l~--~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.+++.|.. .. .++++||||. |.=|-|.+++|
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~d 204 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVN 204 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEEC
Confidence 998876532 11 3899999999 67778877743
No 45
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.32 E-value=0.0022 Score=62.66 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 022919 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (290)
Q Consensus 103 iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf 182 (290)
--++++++...|+..+.+.+++. .+.+|++..+++ .++..+. ...+.||+|+||....| +..|.++.
T Consensus 128 g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~lg~PvVVKP~~g~g---g~Gv~iv~ 194 (474)
T 3vmm_A 128 GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRAA--LEEIGTPLILKPTYLAS---SIGVTLIT 194 (474)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHHH--HHHSCSSEEEEESSCCT---TTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHH--HHHcCCCEEEEECCCCc---CceEEEEC
Confidence 67899999999999999998864 366788887752 1112122 23578999999976555 46688999
Q ss_pred cCCCCCC-------------------CCCCeeEEeeeecC
Q 022919 183 DRFSLSE-------------------LEPPMLLQEFVNHG 203 (290)
Q Consensus 183 ~~~gL~~-------------------l~~P~V~QeFinH~ 203 (290)
+++.|.. ...++++||||...
T Consensus 195 ~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 195 DTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp CTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 9988641 24689999999854
No 46
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.29 E-value=0.00041 Score=65.70 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=71.6
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvvvKp~~g~g---g~G 152 (424)
T 2yw2_A 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEYVE--KVGAPIVVKADGLAA---GKG 152 (424)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCCT---TCS
T ss_pred CCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--HcCCcEEEEeCCCCC---CCC
Confidence 56566 6688899999999998888754 366788887742 222222222 367999999966544 577
Q ss_pred EEEEecCCCCCC----------C---CCCeeEEeeeecCeeEEEEEEE--cceEE
Q 022919 178 LFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYII--GETIK 217 (290)
Q Consensus 178 Malvf~~~gL~~----------l---~~P~V~QeFinH~gvl~KvYVv--Gd~v~ 217 (290)
+.++.+++.|.. . ..++++||||. |.-|-|.++ |+.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~ 205 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYV 205 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEE
Confidence 899998876541 1 25899999998 456666666 44433
No 47
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00042 Score=65.56 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=71.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~g---g~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLAA---GKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSCS---STT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCCC---CCC
Confidence 45566 7788899999999998888754 366788887752 222222222 367999999966544 567
Q ss_pred EEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 178 Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.++.+++.|.. ...++++||||. |.-|-|.+++|
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~ 195 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTD 195 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEe
Confidence 888888876541 236899999998 56788887743
No 48
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.24 E-value=0.00029 Score=66.70 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=70.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||.... .+..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~---~g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAYVQ--EKGAPIVIKADGLA---AGKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCG---GGTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCc
Confidence 45566 6778899999999999888764 366788888752 222222222 36799999996654 4567
Q ss_pred EEEEecCCCCCC----------C---CCCeeEEeeeecCeeEEEEEEEc
Q 022919 178 LFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIG 213 (290)
Q Consensus 178 Malvf~~~gL~~----------l---~~P~V~QeFinH~gvl~KvYVvG 213 (290)
+.++.+++.|.. . ..++++||||. |.-|-|.++.
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~ 199 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFV 199 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEE
Confidence 888988876542 1 36899999999 5677777773
No 49
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.16 E-value=0.00053 Score=65.81 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=66.4
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 107 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvVvKp~~~~g---g~G 173 (451)
T 2yrx_A 107 GLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAYIE--QKGAPIVIKADGLAA---GKG 173 (451)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEECC-------CC
T ss_pred CCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCcEEEEeCCCCC---CCc
Confidence 45555 5677888888888888888754 366788888752 222222222 367999999977554 567
Q ss_pred EEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEE
Q 022919 178 LFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYII 212 (290)
Q Consensus 178 Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVv 212 (290)
+.++.+++.|.. ...++++||||. |.-|=|.++
T Consensus 174 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~ 219 (451)
T 2yrx_A 174 VTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAF 219 (451)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEE
Confidence 888888776531 136899999999 566777666
No 50
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.10 E-value=0.0007 Score=64.89 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=67.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccc-eEeeeccccCCCCce
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKSH 176 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~vA~Gs~~SH 176 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+ ..+.|| +|+||....| +.
T Consensus 112 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvvKp~~~~g---g~ 178 (452)
T 2qk4_A 112 GVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFI--LSADFPALVVKASGLAA---GK 178 (452)
T ss_dssp TCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHH--HHCSSCEEEEEESBC------C
T ss_pred CCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhCCCCeEEEEeCCCCC---CC
Confidence 45555 6677888888888888887754 366788887752 22222222 247899 9999966544 56
Q ss_pred eEEEEecCCCCCC----------C---CCCeeEEeeeecCeeEEEEEEEc
Q 022919 177 ELFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIG 213 (290)
Q Consensus 177 ~Malvf~~~gL~~----------l---~~P~V~QeFinH~gvl~KvYVvG 213 (290)
.+.++.+++.|.. . ..++++||||. |.-|-|.+++
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 7888988876542 1 36899999999 5778888774
No 51
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.07 E-value=0.00095 Score=64.45 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=69.4
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (290)
.+.++ -+.++++...|+..+.+.+++. .|.+|++..+++ .++..+.+. .+.||+|+||.... .+..
T Consensus 107 Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~~~---gg~G 173 (442)
T 3lp8_A 107 GILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYKFID--KHKLPLVVKADGLA---QGKG 173 (442)
T ss_dssp TCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHHHHH--HSCSSEEEEESSCC---TTTS
T ss_pred CCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHHHHH--HcCCcEEEeECCCC---CCCe
Confidence 45555 6677778888888888887754 366899988852 222222222 46899999997544 4577
Q ss_pred EEEEecCCCCCC----------C---CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 178 LFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 178 Malvf~~~gL~~----------l---~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
+.++.+++.+.. . ..++++||||. |.-|=|.++.|
T Consensus 174 V~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 174 TVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 889998876531 1 25899999999 56677777744
No 52
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.00 E-value=0.00059 Score=65.32 Aligned_cols=102 Identities=10% Similarity=0.214 Sum_probs=70.5
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+.+.+++. .+.+|++. .++ +.+++.+.. ..+.||+|+||.... .+
T Consensus 103 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~g~---gg 169 (446)
T 3ouz_A 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAAGG---GG 169 (446)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETTCC---TT
T ss_pred CCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCC---CC
Confidence 56666 6789999999999999998864 35566664 332 222222222 246799999997544 45
Q ss_pred eeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..|.++.+++.|... ..++++||||... .-|=|.|++|
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 779999999987531 5789999999863 4555666654
No 53
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.97 E-value=0.0029 Score=63.13 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=91.2
Q ss_pred HHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE----Ecc---------------------CC
Q 022919 93 YRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV----ITK---------------------DS 146 (290)
Q Consensus 93 y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~----i~~---------------------~~ 146 (290)
..+++ .+.++ -++++++.+.|+..+.+.+++.. |.+|++.. ++. ..
T Consensus 143 ~le~~-Gi~~iGp~~~ai~~~~DK~~~k~ll~~~G-------VPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 214 (540)
T 3glk_A 143 LLCKN-GVAFLGPPSEAMWALGDKIASTVVAQTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCV 214 (540)
T ss_dssp HHHHT-TCEESSCCHHHHC---CHHHHHHHHHHTT-------CCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSC
T ss_pred HHHHc-CCceeCCCHHHHHHhCCHHHHHHHHHHcC-------CCCCCcccccccccccccccccccccccccccccccCc
Confidence 33343 67777 78889999999999999988653 34444432 000 01
Q ss_pred CCchhHH-HhcCCccceEeeeccccCCCCceeEEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc--
Q 022919 147 LSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE-- 214 (290)
Q Consensus 147 ~~~~~~l-~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd-- 214 (290)
.+..+.. ....+.||+|+||....| +..|.++.+++.|.. ...++++|+||.. +.=|=|-|+||
T Consensus 215 ~s~~ea~~~a~~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d~~ 290 (540)
T 3glk_A 215 KDVDEGLEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQY 290 (540)
T ss_dssp CSHHHHHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEECTT
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCC
Confidence 1111111 123578999999966544 578999999998752 1568999999964 46677777766
Q ss_pred --eEEEEEec-CCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCce-eeeeecC
Q 022919 215 --TIKVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGWA-FGCLTLI 290 (290)
Q Consensus 215 --~v~v~~R~-Slpn~~~~~~~~~~~~~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL~-LfGfDli 290 (290)
.+.+..|- |+..... .. +...++ ..+++ .-.+.+.++|..+-+++|+. .+++|++
T Consensus 291 G~vv~l~~rd~s~qr~~~-------k~-----ie~~Pa----~~l~~-----~~~~~l~~~a~~~~~alG~~G~~~VEf~ 349 (540)
T 3glk_A 291 GNAVSLFGRDCSIQRRHQ-------KI-----VEEAPA----TIAPL-----AIFEFMEQCAIRLAKTVGYVSAGTVEYL 349 (540)
T ss_dssp SCEEEEEEEEEEEC---C-------CS-----EEEESC----TTSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCEEEEeceeeeeeeccc-------ce-----EEecCC----CCCCH-----HHHHHHHHHHHHHHHHcCCccceEEEEE
Confidence 34444441 1110000 00 000000 00110 01456888999999999994 6667653
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=96.74 E-value=0.0032 Score=60.31 Aligned_cols=102 Identities=7% Similarity=0.167 Sum_probs=68.2
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.+++.+... .+.||+|+||....| +
T Consensus 104 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 170 (461)
T 2dzd_A 104 GIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKAALGGG---G 170 (461)
T ss_dssp TCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEESTTCS---S
T ss_pred CCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEeCCCCC---C
Confidence 45544 5588889999999988888754 35567765 342 2222222222 367999999977555 4
Q ss_pred eeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..|.++.+++.|... ..++++||||.. +.-|-|.+++|
T Consensus 171 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 171 RGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp SSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 668899998877421 468999999985 34466666654
No 55
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.70 E-value=0.005 Score=62.99 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=90.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEE-ccCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (290)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++... -.+.+++.+... .+.||+|+||....| +.
T Consensus 125 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~G-------Vpvpp~~~~~~~s~~e~~~~a~--~igyPvvvKp~~G~G---g~ 192 (675)
T 3u9t_A 125 GLLFLGPPAAAIDAMGSKSAAKALMEEAG-------VPLVPGYHGEAQDLETFRREAG--RIGYPVLLKAAAGGG---GK 192 (675)
T ss_dssp TCEESSCCHHHHHHHTSHHHHHHHHHHTT-------CCBCCCCCSCCCCTTHHHHHHH--HSCSSBCCBCCC--------
T ss_pred CCceeCCCHHHHHHhchHHHHHHHHHHcC-------cCcCCccccCCCCHHHHHHHHH--hCCCcEEEEECCCCC---Cc
Confidence 45555 67899999999999999888643 455554431 113333323322 478999999976554 57
Q ss_pred eEEEEecCCCCCC----C---------CCCeeEEeeeecCeeEEEEEEEcc----eEEEEEec-CCCCCchhhhhcccee
Q 022919 177 ELFLAYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIGE----TIKVVRRF-SLPNVSKRELAKVVSV 238 (290)
Q Consensus 177 ~Malvf~~~gL~~----l---------~~P~V~QeFinH~gvl~KvYVvGd----~v~v~~R~-Slpn~~~~~~~~~~~~ 238 (290)
.|.++.+++.|.. + ..++++|+||... .-|=|-|++| .+.+..|. |+-.-.. ..
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d~~G~vv~l~~rd~s~qr~~q-------k~ 264 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFADRHGHCLYLNERDCSIQRRHQ-------KV 264 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEECSSSCEEEEEEEECCCBSSSS-------BC
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEcCCCCEEEEeccccceeeccc-------eE
Confidence 7999999998742 1 3589999999864 3344445543 44444442 2211100 00
Q ss_pred eeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCc-eeeeeecC
Q 022919 239 FRFPRVSSAAASADDADLDPGIAGENSLPALCWKGLQGNSAIGW-AFGCLTLI 290 (290)
Q Consensus 239 ~~f~~vS~~~s~~~~~~ld~~~~e~p~~~~v~~iA~~LR~~LGL-~LfGfDli 290 (290)
+.. .++ ..+++ .-.+.+.++|..+-+++|+ ..+++|++
T Consensus 265 ie~-----~Pa----~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~ 303 (675)
T 3u9t_A 265 VEE-----APA----PGLGA-----ELRRAMGEAAVRAAQAIGYVGAGTVEFL 303 (675)
T ss_dssp EEE-----ESC----SSCCH-----HHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred EEE-----CCC----CCCCH-----HHHHHHHHHHHHHHHHcCCccceEEEEE
Confidence 000 000 00110 0135678899999999999 47777764
No 56
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.61 E-value=0.0019 Score=60.48 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=73.0
Q ss_pred HHHHhhccceEEEEecCCCCCC---CCCCceE--EEecc------cch-----HHHHH--HHHHHHhCCCeEEeCChhHH
Q 022919 48 LEILARNKGISFVAIDQNRPLS---DQGPFDV--VLHKL------SGM-----EWCKI--IEDYRQKHPEVTILDPPDAI 109 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~---~Qgp~Dv--ILHKl------td~-----~~~~~--l~~y~~~hP~v~ViDP~~~i 109 (290)
+...|++.|+.++-+|.+.+-. ...-.|- ++.+. .|. ++... ++.. + .-.+.+..+.+++
T Consensus 16 ~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~l-e-~~~~p~~p~~~~l 93 (320)
T 2pbz_A 16 ILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAI-E-KAKARFFGNRRFL 93 (320)
T ss_dssp HHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHH-H-TCCSCCBSCSSGG
T ss_pred HHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHH-H-HcCCCcCCCHHHH
Confidence 5567888999999999874211 1111111 11111 121 23321 2222 2 2356788888899
Q ss_pred hhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC
Q 022919 110 KHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 189 (290)
Q Consensus 110 ~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~ 189 (290)
+...||...-+.++++ .|.+|++.. .+++ .+.||+|+||.. |+ +++...++.+ +.|..
T Consensus 94 ~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~--g~-ggkG~~~v~~-eel~~ 151 (320)
T 2pbz_A 94 KWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEG--PR-GGSGHFIVEG-SELEE 151 (320)
T ss_dssp GGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EECSC
T ss_pred HHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECC--CC-CCCCEEEECh-HHHHH
Confidence 9999998766777765 356677762 2222 478999999955 44 5789999999 88864
Q ss_pred C----CCCeeEEeeee
Q 022919 190 L----EPPMLLQEFVN 201 (290)
Q Consensus 190 l----~~P~V~QeFin 201 (290)
. ..++++||||+
T Consensus 152 ~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 152 RLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCC----CCEEEECCC
T ss_pred HHHhcCCCEEEEeeec
Confidence 3 25899999999
No 57
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.52 E-value=0.0023 Score=61.02 Aligned_cols=101 Identities=9% Similarity=0.170 Sum_probs=67.3
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCc-hhHHHhcCCccceEeeeccccCCCC
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKPLVVDGSAK 174 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~-~~~l~~agl~fP~I~Kp~vA~Gs~~ 174 (290)
.+.++ -++++++...|+..+.+.+++.. |.+|++. .++ +.+++ .+... .+.||+|+||....|
T Consensus 99 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~g--- 165 (449)
T 2w70_A 99 GFIFIGPKAETIRLMGDKVSAIAAMKKAG-------VPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGGG--- 165 (449)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHHT-------CCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCCT---
T ss_pred CCceECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCCC---
Confidence 45554 45888999999999988887643 4566665 443 22222 22222 367999999977655
Q ss_pred ceeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEc
Q 022919 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG 213 (290)
Q Consensus 175 SH~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvG 213 (290)
+..+.++.+++.|... ..++++||||.. +.-|-|.+++
T Consensus 166 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~ 216 (449)
T 2w70_A 166 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLA 216 (449)
T ss_dssp TTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEE
T ss_pred CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEE
Confidence 4667888888766421 468999999975 3446666664
No 58
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=96.32 E-value=0.0026 Score=57.37 Aligned_cols=130 Identities=20% Similarity=0.257 Sum_probs=79.9
Q ss_pred HHHHHhhccceEEEEecCCCC--------CCCC---CC-c---------eEEEecccchHHH-HHHHHHHHhCCCeEEeC
Q 022919 47 KLEILARNKGISFVAIDQNRP--------LSDQ---GP-F---------DVVLHKLSGMEWC-KIIEDYRQKHPEVTILD 104 (290)
Q Consensus 47 ~l~~~~~~~gi~~v~lD~~~p--------l~~Q---gp-~---------DvILHKltd~~~~-~~l~~y~~~hP~v~ViD 104 (290)
.+...+++.|++.+.+|.+.. +.+. .+ + |+|+ ..++... ..++.. + .-.+.++-
T Consensus 15 ~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e-~~g~~~~~ 90 (334)
T 2r85_A 15 QILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-E-NMKVPYFG 90 (334)
T ss_dssp HHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-H-TCCSCBBS
T ss_pred HHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-H-HcCCCccC
Confidence 466677889999998887642 1111 12 2 5554 1122111 112222 2 23566677
Q ss_pred ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecC
Q 022919 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (290)
Q Consensus 105 P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~ 184 (290)
++++++...|+..+.+.+++. .|.+|++ +. +. ..+.||+|+||....|+ ..+.++.++
T Consensus 91 ~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~~s---~Gv~~v~~~ 148 (334)
T 2r85_A 91 NKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAKGG---KGYFLAKDP 148 (334)
T ss_dssp CTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEESSH
T ss_pred CHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCCCC---CCEEEECCH
Confidence 789999999999998888754 3556777 32 21 12569999999776654 557788888
Q ss_pred CCCCCC----------C--CCeeEEeeeec
Q 022919 185 FSLSEL----------E--PPMLLQEFVNH 202 (290)
Q Consensus 185 ~gL~~l----------~--~P~V~QeFinH 202 (290)
+.|... . .++++||||+-
T Consensus 149 ~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 149 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp HHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 766421 2 78999999984
No 59
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.15 E-value=0.0021 Score=61.38 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=67.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++...|+..+.+.+++.. |.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 1ulz_A 98 GITFIGPHWKVIELMGDKARSKEVMKKAG-------VPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHTT-------CCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSSS---C
T ss_pred CCeEECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCCC---C
Confidence 45555 55888889999999988887643 5566665 342 2112222222 367999999977555 4
Q ss_pred eeEEEEecCCCCCC------------C-CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~------------l-~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..+.++.+++.|.. + ..++++||||..+ .-|-|.++++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 215 (451)
T 1ulz_A 165 RGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-KHIEYQVLGD 215 (451)
T ss_dssp CSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-EEEEEEEEEC
T ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-eEEEEEEEEc
Confidence 66788988876642 1 4689999999853 4566666653
No 60
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.13 E-value=0.013 Score=59.06 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=72.7
Q ss_pred HHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE----Ec---------------------cC
Q 022919 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV----IT---------------------KD 145 (290)
Q Consensus 92 ~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~----i~---------------------~~ 145 (290)
+..++. .+.++ -++++++.+.|+..+.+.+++... .+|++.. ++ ..
T Consensus 158 ~~le~~-Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGV-------Pvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (587)
T 3jrx_A 158 ELLCKN-GVAFLGPPSEAMWALGDKIASTVVAQTLQV-------PTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGC 229 (587)
T ss_dssp HHHHTT-TCEESSCCHHHHHHHCSHHHHHHHHHHTTC-------CBCCBTTTTCCCCC------CCCCCCCCHHHHHTTS
T ss_pred HHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHHHHcCC-------CCCCeecccccccccccccccccccccchhhccccc
Confidence 334443 67777 788899999999999999886533 3343322 00 00
Q ss_pred CCCchhHHH-hcCCccceEeeeccccCCCCceeEEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 146 SLSIPDQVF-EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 146 ~~~~~~~l~-~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..+..+..+ ...+.||+|+||....| +..|.+|.+++.|.. ...++++|+||.. +.=|=|-|+||
T Consensus 230 v~s~eea~~~a~~iGyPvVVKp~~GgG---GkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D 304 (587)
T 3jrx_A 230 VKDVDEGLEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 304 (587)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCCS---SSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred cCCHHHHHHHHHhcCCeEEEEeCCCCC---CCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 111111111 23578999999966554 567999999998752 1568999999975 45666777766
No 61
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.00 E-value=0.0039 Score=59.49 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=67.4
Q ss_pred CeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++= ++++++...|+..+.+.+++.. |.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 2vpq_A 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKAN-------VPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHTT-------CCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCCT---T
T ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCCC---C
Confidence 566555 4889999999999999888643 4555544 343 2222222222 367999999976554 5
Q ss_pred eeEEEEecCCCCCC-------------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~-------------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..+.++.+++.|.. -..++++||||.. +.-|-|.++++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 215 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGD 215 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEc
Confidence 67888988876642 1468999999985 34455666543
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=95.94 E-value=0.0095 Score=60.97 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeecc
Q 022919 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (290)
Q Consensus 92 ~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~v 168 (290)
+..+++ .+.++ -++++++.+.|+..+.+.+++. .|.+|++. .+. +.+++.+.. ..+.||+|+||..
T Consensus 93 ~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~a--~~igyPvVvKp~~ 161 (681)
T 3n6r_A 93 EALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKIS--NQIGYPVMIKASA 161 (681)
T ss_dssp HHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------
T ss_pred HHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHHH--HhcCCcEEEEECC
Confidence 334444 56666 6789999999999999988754 35556653 332 222222222 3578999999976
Q ss_pred ccCCCCceeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 169 A~Gs~~SH~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..| +..|.++.+++.|... ..++++|+||... .=|=|-|++|
T Consensus 162 ggg---gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d 216 (681)
T 3n6r_A 162 GGG---GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCD 216 (681)
T ss_dssp --------------------------------------------CCSC-EEEEEEEECC
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEe
Confidence 544 5789999999987532 2479999999864 5667777765
No 63
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=95.85 E-value=0.0073 Score=59.81 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEE-----ccC-----------------CCCchhHHH-hcCCcc
Q 022919 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQVF-EAGLKL 160 (290)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i-----~~~-----------------~~~~~~~l~-~agl~f 160 (290)
-++++++.+.|+..+.+.+++.. |.+|++..+ ..+ ..+..+..+ ...+.|
T Consensus 163 p~~~a~~~~~dK~~~k~~l~~~G-------Ip~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~ 235 (554)
T 1w96_A 163 PPGNAMRSLGDKISSTIVAQSAK-------VPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF 235 (554)
T ss_dssp CCHHHHHHSCSHHHHHHHHHHTT-------CCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCS
T ss_pred CCHHHHHHHhCHHHHHHHHHHCC-------CCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCC
Confidence 34568889999999888888653 334444321 000 011111111 124679
Q ss_pred ceEeeeccccCCCCceeEEEEecCCCCCC---------CCCCeeEEeeeecCeeEEEEEEEcc
Q 022919 161 PLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 161 P~I~Kp~vA~Gs~~SH~Malvf~~~gL~~---------l~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
|+|+||....| +..|.++.+++.|.. -..++++||||.. +.-|=|.+++|
T Consensus 236 PvVvKp~~g~g---g~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d 294 (554)
T 1w96_A 236 PVMIKASEGGG---GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLAD 294 (554)
T ss_dssp SEEEEETTCCT---TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CEEEEECCCCC---CceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 99999977655 467889999887642 1468999999984 45566677765
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=95.62 E-value=0.045 Score=59.76 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=31.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCc-eEEEccCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~-~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (290)
.+.++ -++++++.+.|+..+.+.+++.. |.+|+ +..++ +.++..+.. ..+.||+|+||....| +.
T Consensus 128 Gi~~iGps~eai~~~~DK~~ak~ll~~aG-------IPvpp~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---Gk 194 (1236)
T 3va7_A 128 NIVFVGPSGDAIRKLGLKHSAREIAERAK-------VPLVPGSGLIK-DAKEAKEVA--KKLEYPVMVKSTAGGG---GI 194 (1236)
T ss_dssp TCEESSCCHHHHHHHHSTTHHHHHHHHTT-------CCCCC---------------------------------------
T ss_pred CCCeeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCeeEecC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CC
Confidence 45554 67788899999988888887643 44544 33333 222222222 3578999999965444 57
Q ss_pred eEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 177 ~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
.|.++.+++.|... ..++++||||.. +.=|=|.|++|
T Consensus 195 GV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~D 244 (1236)
T 3va7_A 195 GLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGD 244 (1236)
T ss_dssp --------------------------------------C-CEEEEEEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEec
Confidence 79999999987531 357999999986 45666667765
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.46 E-value=0.031 Score=60.56 Aligned_cols=102 Identities=9% Similarity=0.187 Sum_probs=65.2
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++. .+. +.++..+.. ..+.||+|+||....| +
T Consensus 102 Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---g 168 (1150)
T 3hbl_A 102 GIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEFA--EEAGFPLMIKATSGGG---G 168 (1150)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTTG--GGTCSSEEEECCC-------
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHHH--HHcCCCEEEEeCCCCC---C
Confidence 56666 6779999999999999988764 35566665 343 222222222 3578999999976554 5
Q ss_pred eeEEEEecCCCCCC----C---------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~----l---------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..|.++.+++.|.. + ..++++|+||... .-|=|-|+||
T Consensus 169 ~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-reieV~vl~d 219 (1150)
T 3hbl_A 169 KGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-KHIEVQVIGD 219 (1150)
T ss_dssp ---CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-cEEEEEEEEe
Confidence 78999999998852 1 3579999999753 4456666655
No 66
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.94 E-value=0.047 Score=59.18 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=36.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022919 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (290)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (290)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 118 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp~~g~G---G 184 (1165)
T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKASWGGG---G 184 (1165)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC----------------------------------------
T ss_pred CCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEeCCCCC---C
Confidence 56555 4588999999999998888764 35567766 343 222222221 3578999999977555 5
Q ss_pred eeEEEEecCCCCCCC-------------CCCeeEEeeeecCeeEEEEEEEcc
Q 022919 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (290)
Q Consensus 176 H~Malvf~~~gL~~l-------------~~P~V~QeFinH~gvl~KvYVvGd 214 (290)
..|.++.+++.|... ..++++|+||.. |.=|=|.+++|
T Consensus 185 ~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D 235 (1165)
T 2qf7_A 185 RGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGD 235 (1165)
T ss_dssp -----------------------------------CCCSS-EEEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEc
Confidence 679999999877531 257999999985 55677777776
No 67
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.88 E-value=0.0025 Score=48.35 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=41.4
Q ss_pred ceecCceE--EEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEEecCCCCCC------------C-CCCeeEE
Q 022919 133 KVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------------L-EPPMLLQ 197 (290)
Q Consensus 133 ~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~------------l-~~P~V~Q 197 (290)
.|.+|++. .+. +.++..+.. ..+.||+|+||....| +..+.++.+++.|.. . ..++++|
T Consensus 20 gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~~---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 93 (108)
T 2cqy_A 20 EVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGGG---GKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIE 93 (108)
T ss_dssp CCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSCC---TTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred CCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCCC---CccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 46777775 443 211121111 2468999999976544 456788888876642 1 3689999
Q ss_pred eeeecC
Q 022919 198 EFVNHG 203 (290)
Q Consensus 198 eFinH~ 203 (290)
|||...
T Consensus 94 e~i~g~ 99 (108)
T 2cqy_A 94 KFIDNP 99 (108)
T ss_dssp ECCSSS
T ss_pred eccCCC
Confidence 999753
No 68
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=91.10 E-value=0.079 Score=46.46 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=56.6
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeecccc--CCCCceeEEE-EecCCCCC
Q 022919 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--GSAKSHELFL-AYDRFSLS 188 (290)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~--Gs~~SH~Mal-vf~~~gL~ 188 (290)
.+|...+.+.+++. .|.+|++..+++. ++.... ...+.||+|+||...+ |..++-.+.+ +.+++.|.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~~-~ea~~~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKTL-DEALEY--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESSH-HHHHHH--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCCH-HHHHHH--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 46777777777643 4778888887522 111111 1247899999997641 0123444555 68877664
Q ss_pred CC----------------CCCeeEEeeeecCeeEEEEEEEcce
Q 022919 189 EL----------------EPPMLLQEFVNHGGILFKIYIIGET 215 (290)
Q Consensus 189 ~l----------------~~P~V~QeFinH~gvl~KvYVvGd~ 215 (290)
.. ..++++|+||.++ .=|=|-+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g-~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPG-REVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCC-EEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCC-eEEEEEEEeCC
Confidence 21 2579999999964 44455556654
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=91.10 E-value=0.29 Score=46.22 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHhhccceEEEEecCCCCCC---CCCCceEEE-ec-ccchHHHHHHHHHHHhC---------------------CCeE
Q 022919 48 LEILARNKGISFVAIDQNRPLS---DQGPFDVVL-HK-LSGMEWCKIIEDYRQKH---------------------PEVT 101 (290)
Q Consensus 48 l~~~~~~~gi~~v~lD~~~pl~---~Qgp~DvIL-HK-ltd~~~~~~l~~y~~~h---------------------P~v~ 101 (290)
+...|++.|+.++.+|.+.+-. .....|-++ -- .+|....+.+++..+.+ -.+.
T Consensus 32 l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~g~~ 111 (361)
T 2r7k_A 32 ILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVP 111 (361)
T ss_dssp HHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTCCSC
T ss_pred HHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHcCCC
Confidence 6677899999999999885421 122334333 22 33300011222222221 1233
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccCCCCceeEEEE
Q 022919 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (290)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Malv 181 (290)
+.-+..+.+.-.+|...-+.+++. .|.+|++ ++ +.+ .+.||+|+||.-+. .++...++
T Consensus 112 v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~~---------e~~~PvVVK~~~~a---~GkGv~v~ 169 (361)
T 2r7k_A 112 MFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SPE---------DIDGTVIVKFPGAR---GGRGYFIA 169 (361)
T ss_dssp BBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SGG---------GCCSCEEEECSCCC---C---EEEE
T ss_pred cCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CHH---------HcCCCEEEeeCCCC---CCCCEEEE
Confidence 333444444445555444455433 3566765 32 211 12599999996544 47889999
Q ss_pred ecCCCCCC----C--------C--CCeeEEeeee
Q 022919 182 YDRFSLSE----L--------E--PPMLLQEFVN 201 (290)
Q Consensus 182 f~~~gL~~----l--------~--~P~V~QeFin 201 (290)
.+.+.+.. + . .++|+|||++
T Consensus 170 ~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 170 SSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 99887642 1 2 4799999998
No 70
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=79.32 E-value=23 Score=35.84 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=92.0
Q ss_pred hHHHHHhhccceEEEEec-CCCC-CCCCC--------CceEEEecccchHHH-HHHH---------------------HH
Q 022919 46 PKLEILARNKGISFVAID-QNRP-LSDQG--------PFDVVLHKLSGMEWC-KIIE---------------------DY 93 (290)
Q Consensus 46 ~~l~~~~~~~gi~~v~lD-~~~p-l~~Qg--------p~DvILHKltd~~~~-~~l~---------------------~y 93 (290)
.-|.+.|++.|++...+| ++.= +.+.| ++|+|. |+.-.+|. ..+. ++
T Consensus 397 ~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g~~l 475 (619)
T 2io8_A 397 QFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRL 475 (619)
T ss_dssp HHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---CCSSCCCCSCCSSCCCCH
T ss_pred HHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccccccccccccCccchHHH
Confidence 348889999999999997 5431 12222 556554 46655554 2220 34
Q ss_pred HH--hCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEccCCCCchhHHHhcCCccceEeeeccccC
Q 022919 94 RQ--KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (290)
Q Consensus 94 ~~--~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G 171 (290)
.+ ....+.+|.|+.++- +.|+..+ ..|-++... + +--.|.++ +.+. .+... .+|.||+...+
T Consensus 476 l~~l~~~~v~iieP~~~~l-lsNKail-alLw~l~p~--h-p~LLpT~f----~~~~---~l~~~----~yV~KPi~gRe 539 (619)
T 2io8_A 476 IDVLLRPEVLVFEPLWTVI-PGNKAIL-PILWSLFPH--H-RYLLDTDF----TVND---ELVKT----GYAVKPIAGRC 539 (619)
T ss_dssp HHHHTCTTCEEESCGGGGT-TTSTTHH-HHHHHHSTT--C-TTCCCEES----SCCH---HHHHH----CEEEEETTCCT
T ss_pred HHHHHhCCCEEECHHHHHH-hhhHHHH-HHHHHhCCC--C-CCCCCeee----cCCc---ccccC----CEEEccCCCCC
Confidence 33 356899999998876 7887543 333332211 1 11123332 1111 12222 49999988555
Q ss_pred CCCceeEEEEec-CCCCCC-----CCCCeeEEeeeecC-----eeEEEEEEEcceEE-EEEecCC
Q 022919 172 SAKSHELFLAYD-RFSLSE-----LEPPMLLQEFVNHG-----GILFKIYIIGETIK-VVRRFSL 224 (290)
Q Consensus 172 s~~SH~Malvf~-~~gL~~-----l~~P~V~QeFinH~-----gvl~KvYVvGd~v~-v~~R~Sl 224 (290)
. ..|.|+-. .+.+.+ -+.++|.|+|+.-. -.++=+|+||+++. +..|-+-
T Consensus 540 G---~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~~ 601 (619)
T 2io8_A 540 G---SNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDE 601 (619)
T ss_dssp T---TTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEES
T ss_pred C---CCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecCC
Confidence 4 44777754 221111 13679999999864 34578999999654 6677663
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=78.67 E-value=0.75 Score=44.01 Aligned_cols=79 Identities=22% Similarity=0.112 Sum_probs=49.0
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCccceEeeeccc-cCCCCceeEEEEecCCCCCC-----C--------CCCeeEEe
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSE-----L--------EPPMLLQE 198 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA-~Gs~~SH~Malvf~~~gL~~-----l--------~~P~V~Qe 198 (290)
.|.+|++.++.+ .++..+..+ .+.||+++||... -|..++.-+.++.+++.+.. + -..+++||
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~--~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe 92 (397)
T 3ufx_B 16 GVPVPPGKVAYT-PEEAKRIAE--EFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAE 92 (397)
T ss_dssp TCCCCCEEEESS-HHHHHHHHH--HHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEE
Confidence 578899988853 222222222 3459999999772 24456678888877765531 1 24799999
Q ss_pred eeecCeeEEEEEEEcce
Q 022919 199 FVNHGGILFKIYIIGET 215 (290)
Q Consensus 199 FinH~gvl~KvYVvGd~ 215 (290)
|++++- =|=|-++.|.
T Consensus 93 ~v~~g~-El~vgv~~D~ 108 (397)
T 3ufx_B 93 AVDIAK-EYYAGLILDR 108 (397)
T ss_dssp CCCEEE-EEEEEEEEET
T ss_pred eecCCe-eEEEEEEecC
Confidence 998753 3334444443
No 72
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=74.73 E-value=1 Score=43.16 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=35.9
Q ss_pred hcCCccceEeeeccccCCCCceeEEEEecCCCCCC----CCCCeeEEeeeec------C--eeEEEEEEEc
Q 022919 155 EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNH------G--GILFKIYIIG 213 (290)
Q Consensus 155 ~agl~fP~I~Kp~vA~Gs~~SH~Malvf~~~gL~~----l~~P~V~QeFinH------~--gvl~KvYVvG 213 (290)
..|-.-+||+||.. |+ ....+.|+-+.+.+.+ -..+.|+|+||.+ + -.-+.+||+-
T Consensus 143 ~~~~~~~wI~KP~~--~s-rG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 143 ENEEGNVWIAKSSS--GA-KGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp HTTCCCCEEEEESC--C-----CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred hcCCCCeEEEeCCc--cC-CCCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 35788999999944 43 2355666655554432 2468999999975 3 4577888873
No 73
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=69.49 E-value=1.5 Score=41.85 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=50.0
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCccc-eEeeecccc-CCCCceeEEEEecCCCCCC---------C-----------
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSE---------L----------- 190 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~vA~-Gs~~SH~Malvf~~~gL~~---------l----------- 190 (290)
.|.+|++.++.+ .++..+.. ..+.|| +|+||.... |..++.-+.++.+++.+.. +
T Consensus 16 GIpvp~~~~~~s-~eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~ 92 (388)
T 2nu8_B 16 GLPAPVGYACTT-PREAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQP 92 (388)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEE
T ss_pred CcCCCCeeEECC-HHHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcc
Confidence 577899988852 21122222 246799 999997732 3346778888888765431 0
Q ss_pred CCCeeEEeeeecCeeEEEEEEEcceE
Q 022919 191 EPPMLLQEFVNHGGILFKIYIIGETI 216 (290)
Q Consensus 191 ~~P~V~QeFinH~gvl~KvYVvGd~v 216 (290)
..++++|+|++++- =|=|-++.|..
T Consensus 93 ~~~vlVEe~v~~~~-E~~v~v~~D~~ 117 (388)
T 2nu8_B 93 VNQILVEAATDIAK-ELYLGAVVDRS 117 (388)
T ss_dssp CCCEEEEECCCEEE-EEEEEEEEETT
T ss_pred cceEEEEEccccCC-cEEEEEEEecc
Confidence 13699999999753 33355555543
No 74
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=68.54 E-value=2.8 Score=24.58 Aligned_cols=22 Identities=14% Similarity=-0.274 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCce
Q 022919 262 GENSLPALCWKGLQGNSAIGWA 283 (290)
Q Consensus 262 e~p~~~~v~~iA~~LR~~LGL~ 283 (290)
..|++++-.++|+.||++.|..
T Consensus 3 ripsydfadelakllrqa~g~~ 24 (26)
T 1sn9_A 3 RIPSYDFADELAKLLRQAXGXX 24 (26)
T ss_dssp CBTTBCHHHHHHHHHHHHTC--
T ss_pred CCCccchHHHHHHHHHHhhCcc
Confidence 4578899999999999999864
No 75
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=53.78 E-value=20 Score=33.28 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=56.4
Q ss_pred cCCCCCccEEEEEEechhh-hhhccc---hHHHHHhhccc--eEEEEecCCCCCCC---------CCCceEEEecccchH
Q 022919 21 SGVLQPERLVVGYALTSKK-KKSFLQ---PKLEILARNKG--ISFVAIDQNRPLSD---------QGPFDVVLHKLSGME 85 (290)
Q Consensus 21 ~~~~~~~~~~VGy~l~~kK-~~~f~~---~~l~~~~~~~g--i~~v~lD~~~pl~~---------Qgp~DvILHKltd~~ 85 (290)
++....+.++||+..+-.. -++|++ .++...+++.| +++..++....-++ +..+|+|+= +...
T Consensus 19 ~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~ 96 (356)
T 3s99_A 19 PGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFG 96 (356)
T ss_dssp -------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGG
T ss_pred cccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHH
Confidence 3335567899999996433 235655 45788888899 98887765433211 134898873 4555
Q ss_pred HHHHHHHHHHhCCC--eEEeCC---hhHHhhhccHH
Q 022919 86 WCKIIEDYRQKHPE--VTILDP---PDAIKHLHNRQ 116 (290)
Q Consensus 86 ~~~~l~~y~~~hP~--v~ViDP---~~~i~~l~dR~ 116 (290)
..+.+.+..++||+ ++++|- ..++..+.-|.
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~ 132 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARF 132 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECH
T ss_pred HHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEech
Confidence 56678888899998 555654 34555555443
No 76
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=53.38 E-value=5.4 Score=38.05 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=53.0
Q ss_pred ceecCceEEEccCCCCchhHHHhcCCcc-ceEeeeccccCCC-Cc-------eeEEEEecCCCCC--------CC-----
Q 022919 133 KVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSA-KS-------HELFLAYDRFSLS--------EL----- 190 (290)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~Kp~vA~Gs~-~S-------H~Malvf~~~gL~--------~l----- 190 (290)
.|.+|++.++.+ .++..+.. ..+.| |+++||.+.+|.. +. --+.++.+++.+. ..
T Consensus 16 GIpvp~~~~~~s-~~ea~~~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q 92 (395)
T 2fp4_B 16 GVKVQRFFVADT-ANEALEAA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQ 92 (395)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTT
T ss_pred CcCCCCeEEECC-HHHHHHHH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhc
Confidence 577899988742 22222222 23678 8999999777652 11 3377777766442 10
Q ss_pred -------CCCeeEEeeeecCeeEEEEEEEcceE--EEEEecC-CCCCchhh
Q 022919 191 -------EPPMLLQEFVNHGGILFKIYIIGETI--KVVRRFS-LPNVSKRE 231 (290)
Q Consensus 191 -------~~P~V~QeFinH~gvl~KvYVvGd~v--~v~~R~S-lpn~~~~~ 231 (290)
-..+++|+|++++-- |=|-++.|.. ..+.-.| ...+..+.
T Consensus 93 ~g~~g~~~~~vlVEe~v~~~~E-~~v~i~~D~~~~~pvi~~s~~GG~~iE~ 142 (395)
T 2fp4_B 93 TPKEGVKVNKVMVAEALDISRE-TYLAILMDRSCNGPVLVGSPQGGVDIEE 142 (395)
T ss_dssp SCTTCEECCCEEEEECCCCSEE-EEEEEEEETTTTEEEEEEESSCSSCHHH
T ss_pred cCCCCCccceEEEEEccCCcee-EEEEEEEccccCceEEEEECCCCcccee
Confidence 124899999987533 3344555543 1333333 54444443
No 77
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.27 E-value=95 Score=26.08 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred ccEEEEEEechhhhhhc---cchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022919 27 ERLVVGYALTSKKKKSF---LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (290)
Q Consensus 27 ~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (290)
+..+||+.++.-- ..| ...++...|+++|++++-.+.... .....+.++.+..+.++-+|+
T Consensus 4 ~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~l~~~~vdgiIi 67 (291)
T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRN---------------DQTQVSQIQTLIAQKPDAIIE 67 (291)
T ss_dssp TTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCC---------------HHHHHHHHHHHHHcCCCEEEE
Confidence 4678999998543 222 234578889999998887765332 223445577777778887777
Q ss_pred CChh
Q 022919 104 DPPD 107 (290)
Q Consensus 104 DP~~ 107 (290)
-|.+
T Consensus 68 ~~~~ 71 (291)
T 3l49_A 68 QLGN 71 (291)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 7653
No 78
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=33.06 E-value=85 Score=26.29 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=43.3
Q ss_pred CccEEEEEEechhhhhhcc---chHHHHHhhccceEEEEecCCCCCCCC---------CCceEEEecccchHHHHHHHHH
Q 022919 26 PERLVVGYALTSKKKKSFL---QPKLEILARNKGISFVAIDQNRPLSDQ---------GPFDVVLHKLSGMEWCKIIEDY 93 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~f~---~~~l~~~~~~~gi~~v~lD~~~pl~~Q---------gp~DvILHKltd~~~~~~l~~y 93 (290)
++..+||+.++.-.- .|. ..++...|+++|+.++-.+.+ ..+.| ..+|.|| +........+++
T Consensus 3 ~~~~~Igvi~~~~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI--~~~~~~~~~~~~- 77 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSN-PWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII--IAQDIPDFTVPD- 77 (280)
T ss_dssp -CCCEEEEEESCTTS-GGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE--EESCC--------
T ss_pred CccCEEEEEeCCCCC-hHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE--ecCCCChhhHhh-
Confidence 356789999976432 222 234777889999999988887 54443 5799999 543322333444
Q ss_pred HHhCCCeEEeCCh
Q 022919 94 RQKHPEVTILDPP 106 (290)
Q Consensus 94 ~~~hP~v~ViDP~ 106 (290)
..=.++++|-.
T Consensus 78 --~~iPvV~~~~~ 88 (280)
T 3gyb_A 78 --SLPPFVIAGTR 88 (280)
T ss_dssp ---CCCEEEESCC
T ss_pred --cCCCEEEECCC
Confidence 33346777643
No 79
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.36 E-value=1.3e+02 Score=25.87 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=42.9
Q ss_pred ccEEEEEEechhhhhh--ccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022919 27 ERLVVGYALTSKKKKS--FLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (290)
Q Consensus 27 ~~~~VGy~l~~kK~~~--f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (290)
+..+||+.++.-.-.- -...++...|+++|++++-.+.+.. .....+.++.+..+.++-+|+-
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~i~~~~~~~vdgiIi~ 66 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDD---------------IPNQLSQIENMVTKGVKVLVIA 66 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCC---------------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999998653211 1223577889999998877663211 1233456777777888888887
Q ss_pred Chh
Q 022919 105 PPD 107 (290)
Q Consensus 105 P~~ 107 (290)
|.+
T Consensus 67 ~~~ 69 (330)
T 3uug_A 67 SID 69 (330)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
No 80
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=31.05 E-value=94 Score=25.26 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=43.2
Q ss_pred cEEEEEEechhhhhhccchHHHHH----hhccceEEEEecCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hC
Q 022919 28 RLVVGYALTSKKKKSFLQPKLEIL----ARNKGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KH 97 (290)
Q Consensus 28 ~~~VGy~l~~kK~~~f~~~~l~~~----~~~~gi~~v~lD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~h 97 (290)
..++|.=+++.-.+.... .+... ....+++|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKD-RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR 132 (219)
T ss_dssp CEEEEEESCHHHHHHHHH-HHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 578888887764332221 11100 011279999999965444457899998 33455555555665554 34
Q ss_pred CC-eEEeCC
Q 022919 98 PE-VTILDP 105 (290)
Q Consensus 98 P~-v~ViDP 105 (290)
|+ +++..|
T Consensus 133 pgG~~i~~~ 141 (219)
T 3jwg_A 133 PQTVIVSTP 141 (219)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 55 444433
No 81
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=26.76 E-value=1.4e+02 Score=23.84 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=39.5
Q ss_pred cEEEEEEechhhhhhccchHHHHHhhc---cceEEEEecCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hCC
Q 022919 28 RLVVGYALTSKKKKSFLQPKLEILARN---KGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KHP 98 (290)
Q Consensus 28 ~~~VGy~l~~kK~~~f~~~~l~~~~~~---~gi~~v~lD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~hP 98 (290)
..++|.=+++.-. ..|++ .++.++..|+... ...+.||+|+ |-+.+..+...+++..+ -.|
T Consensus 69 ~~v~~~D~s~~~~---------~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 138 (218)
T 3ou2_A 69 DRVTALDGSAEMI---------AEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAP 138 (218)
T ss_dssp SEEEEEESCHHHH---------HHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred CeEEEEeCCHHHH---------HHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCC
Confidence 3567777665433 33333 3599999999876 5567999998 44444333444444333 223
Q ss_pred C--eEEeCC
Q 022919 99 E--VTILDP 105 (290)
Q Consensus 99 ~--v~ViDP 105 (290)
+ +++.++
T Consensus 139 gG~l~~~~~ 147 (218)
T 3ou2_A 139 GGVVEFVDV 147 (218)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEeC
Confidence 3 455544
No 82
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=25.30 E-value=99 Score=27.97 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred ceEEEEecCCCC---CCCCCCceEEE-----ecccchHHHHHHHHHHHh-CCC--eEEeCCh
Q 022919 56 GISFVAIDQNRP---LSDQGPFDVVL-----HKLSGMEWCKIIEDYRQK-HPE--VTILDPP 106 (290)
Q Consensus 56 gi~~v~lD~~~p---l~~Qgp~DvIL-----HKltd~~~~~~l~~y~~~-hP~--v~ViDP~ 106 (290)
.++|+.-|+..+ +. +.||+|+ |-+++....+.|++..+. .|+ ++|+|+.
T Consensus 230 ~v~~~~~d~~~~~~~~p--~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFP--TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp GEEEEECCCCSSSCCCC--CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ceEEEEccccccCCCCC--CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 699999999773 54 6799986 445566666667666553 343 7777764
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.00 E-value=1.3e+02 Score=25.43 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=42.6
Q ss_pred CCccEEEEEEechhhhh--hccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccc-hHHHHHHHHHHHhCCCeE
Q 022919 25 QPERLVVGYALTSKKKK--SFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG-MEWCKIIEDYRQKHPEVT 101 (290)
Q Consensus 25 ~~~~~~VGy~l~~kK~~--~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd-~~~~~~l~~y~~~hP~v~ 101 (290)
+++..+||+.++.-.-. .-...++...|+++|++++-.+.+.. .+ ....+.++....+.++-+
T Consensus 2 s~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~vdgi 67 (304)
T 3o1i_D 2 SGSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY--------------PNKSRQEQQLALCTQWGANAI 67 (304)
T ss_dssp ---CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST--------------TCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC--------------CCHHHHHHHHHHHHHcCCCEE
Confidence 34578999999865321 11223577788999999888876541 12 123455677777778877
Q ss_pred EeCChh
Q 022919 102 ILDPPD 107 (290)
Q Consensus 102 ViDP~~ 107 (290)
|+-|..
T Consensus 68 ii~~~~ 73 (304)
T 3o1i_D 68 ILGTVD 73 (304)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 776654
No 84
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=24.72 E-value=1.6e+02 Score=25.88 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=33.9
Q ss_pred cceEEEEecCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hCCC--eEEeCCh
Q 022919 55 KGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KHPE--VTILDPP 106 (290)
Q Consensus 55 ~gi~~v~lD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~hP~--v~ViDP~ 106 (290)
..++|+..|+..++.. +||+|+ |-+.|+...+.|++..+ -.|+ ++++|+.
T Consensus 219 ~~v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 219 GRAQVVVGSFFDPLPA--GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp TTEEEEECCTTSCCCC--SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCeEEecCCCCCCCCC--CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 4599999999866654 799986 45566555666666554 2444 7777763
No 85
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.33 E-value=1.5e+02 Score=22.36 Aligned_cols=80 Identities=26% Similarity=0.248 Sum_probs=45.7
Q ss_pred ccchHHHHHhhccceE--EEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHH-hCCCeEEeCChhHHhhhccHHHHH
Q 022919 43 FLQPKLEILARNKGIS--FVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ-KHPEVTILDPPDAIKHLHNRQSML 119 (290)
Q Consensus 43 f~~~~l~~~~~~~gi~--~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~-~hP~v~ViDP~~~i~~l~dR~~~l 119 (290)
+....+...++++|++ .-..+...--+....+|+||-=..=....+.+++... .+-++++|+|.... .+|...++
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~vl 96 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKVL 96 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHHH
Confidence 4444566677778864 3344443211112468999864322222444555443 35678899998774 57887777
Q ss_pred HHHhh
Q 022919 120 QDVAD 124 (290)
Q Consensus 120 ~~l~~ 124 (290)
+.+.+
T Consensus 97 ~~i~~ 101 (109)
T 2l2q_A 97 QLAIN 101 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 86
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.27 E-value=1.4e+02 Score=24.95 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCccEEEEEEechhhh--hhccchHHHHHhhccceEEEEecCCC
Q 022919 25 QPERLVVGYALTSKKK--KSFLQPKLEILARNKGISFVAIDQNR 66 (290)
Q Consensus 25 ~~~~~~VGy~l~~kK~--~~f~~~~l~~~~~~~gi~~v~lD~~~ 66 (290)
.++..+||+.++.-.- -.-...++...|+++|+.++-.+...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4567899999986531 11122357778899999988877543
No 87
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=23.84 E-value=1.5e+02 Score=23.98 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=41.9
Q ss_pred cEEEEEEechhhhhhccchHHHHH----hhccceEEEEecCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hC
Q 022919 28 RLVVGYALTSKKKKSFLQPKLEIL----ARNKGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KH 97 (290)
Q Consensus 28 ~~~VGy~l~~kK~~~f~~~~l~~~----~~~~gi~~v~lD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~h 97 (290)
..++|.=+++.-.+.... .+... .....++|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQE-RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132 (217)
T ss_dssp SEEEEEESCHHHHHHHHH-HHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 467888887654332221 11000 001269999999865544457899998 33344445555555544 34
Q ss_pred CC-eEEeCC
Q 022919 98 PE-VTILDP 105 (290)
Q Consensus 98 P~-v~ViDP 105 (290)
|+ ++++-|
T Consensus 133 pgG~li~~~ 141 (217)
T 3jwh_A 133 PKIVIVTTP 141 (217)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 55 444444
No 88
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=21.62 E-value=53 Score=27.07 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=29.5
Q ss_pred cEEEEEEechhhhhhccchHHHHHhhcc-ceEEEEecCCCCCCCCCCceEEEec
Q 022919 28 RLVVGYALTSKKKKSFLQPKLEILARNK-GISFVAIDQNRPLSDQGPFDVVLHK 80 (290)
Q Consensus 28 ~~~VGy~l~~kK~~~f~~~~l~~~~~~~-gi~~v~lD~~~pl~~Qgp~DvILHK 80 (290)
..++|.-.++...+.... .+... ++.++..|....+...++||+|+--
T Consensus 93 ~~v~~vD~~~~~~~~a~~-----~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 141 (231)
T 1vbf_A 93 DKVVSVEINEKMYNYASK-----LLSYYNNIKLILGDGTLGYEEEKPYDRVVVW 141 (231)
T ss_dssp SEEEEEESCHHHHHHHHH-----HHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CEEEEEeCCHHHHHHHHH-----HHhhcCCeEEEECCcccccccCCCccEEEEC
Confidence 356666666554432221 11111 7999999988766667899999843
No 89
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=21.01 E-value=48 Score=25.34 Aligned_cols=18 Identities=33% Similarity=0.916 Sum_probs=15.5
Q ss_pred eeeecC--eeEEEEEEEcce
Q 022919 198 EFVNHG--GILFKIYIIGET 215 (290)
Q Consensus 198 eFinH~--gvl~KvYVvGd~ 215 (290)
.|.||- |-||.|..+||.
T Consensus 5 ~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 5 NYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CEEEETTTEEEEEEEECC-C
T ss_pred ccccCCccchhheeeeCCCc
Confidence 599998 999999999975
No 90
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.87 E-value=1.2e+02 Score=25.51 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=40.0
Q ss_pred CccEEEEEEechhhhhh--ccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022919 26 PERLVVGYALTSKKKKS--FLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (290)
Q Consensus 26 ~~~~~VGy~l~~kK~~~--f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (290)
++..+||+.++.-.-.- -...++...|+++|+.++-.+.+.. .....+.++.+.++.++-+|+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~l~~~~vdgiI~ 70 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS---------------RISEREQILEFVHLKVDAIFI 70 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC---------------HHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC---------------HHHHHHHHHHHHHcCCCEEEE
Confidence 45679999998643111 1223577788999999887765322 122345566777777777776
Q ss_pred CCh
Q 022919 104 DPP 106 (290)
Q Consensus 104 DP~ 106 (290)
-|.
T Consensus 71 ~~~ 73 (293)
T 3l6u_A 71 TTL 73 (293)
T ss_dssp ECS
T ss_pred ecC
Confidence 554
No 91
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.25 E-value=1.3e+02 Score=25.63 Aligned_cols=67 Identities=10% Similarity=-0.030 Sum_probs=40.1
Q ss_pred ccEEEEEEechhhh--hhccchHHHHHhhccceEEEEecCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022919 27 ERLVVGYALTSKKK--KSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (290)
Q Consensus 27 ~~~~VGy~l~~kK~--~~f~~~~l~~~~~~~gi~~v~lD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (290)
.+++||+.++...- -.-...++...|+++|++++-.+.+.. . ......+.++.+..+.++-+|+-
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~------------~~~~~~~~i~~l~~~~vdgiii~ 68 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-N------------DVPKQVQFIESALATYPSGIATT 68 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-C------------CHHHHHHHHHHHHHTCCSEEEEC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-C------------CHHHHHHHHHHHHHcCCCEEEEe
Confidence 36789999887521 111234577888999999887774311 0 11223345666666777766665
Q ss_pred Ch
Q 022919 105 PP 106 (290)
Q Consensus 105 P~ 106 (290)
|.
T Consensus 69 ~~ 70 (297)
T 3rot_A 69 IP 70 (297)
T ss_dssp CC
T ss_pred CC
Confidence 54
Done!