BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022920
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH
PE=1 SV=2
Length = 525
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/282 (76%), Positives = 256/282 (90%)
Query: 9 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 68
SG++V DAL+ENSIDI +E+L+QLKYDPASVWGY+EVHIEQGPVLEWVG+PLGVV+GIAG
Sbjct: 244 SGISVQDALKENSIDITDENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAG 303
Query: 69 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 128
QTRLKVTV+GSQGHAGTVPMSMRQDPMT AAELIVLLE +CK+PKD+LS + + N T+E
Sbjct: 304 QTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVE 363
Query: 129 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 188
SL++SLVCTVGEIS+WPSASNVIPG+VTFTVDLR IDD GR+ +L++LS ++YQIC+KRS
Sbjct: 364 SLANSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRS 423
Query: 189 VSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHL 248
+ C +ERKHDA+AVM D LS QLKSA+ +ALK+MTG Q E+PV+MSGAGHDAMAM+HL
Sbjct: 424 LLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDAMAMAHL 483
Query: 249 TKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFLETHV 290
TKVGMLFVRCRGGISHSPAEHVLDDDV AAGLA+L FLE+ +
Sbjct: 484 TKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLESQM 525
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671)
GN=hyuC PE=1 SV=1
Length = 414
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 152/282 (53%), Gaps = 25/282 (8%)
Query: 9 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 68
+ VT +AL+ I + Q + + Y E+HIEQGP LE +P+G+V GIAG
Sbjct: 158 NNVTRYEALKTFGFGIDPDFTHQSIREIGDIKHYFEMHIEQGPYLEKNNYPIGIVSGIAG 217
Query: 69 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 128
+ KV + G GHAGTVPMS+R+DP+ AAE+I +E LC +
Sbjct: 218 PSWFKVRLVGEAGHAGTVPMSLRKDPLVGAAEVIKEVETLC-----------------MN 260
Query: 129 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 188
++ V TVG I+++P SN+IP V FT+D+R I+ R ++ ++ ++ + R
Sbjct: 261 DPNAPTVGTVGRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRG 320
Query: 189 VSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHL 248
+ +E+ A V C +L + LK + + + P+I+SGAGHDAM ++ +
Sbjct: 321 LEYQIEKNMAAVPVKCSENLINSLKQSCK--------ELEIDAPIIVSGAGHDAMFLAEI 372
Query: 249 TKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFLETHV 290
T++GM+FVRCR GISHSP E DD+ + + H+
Sbjct: 373 TEIGMVFVRCRNGISHSPKEWAEIDDILTGTKVLYESIIKHI 414
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=1 SV=1
Length = 409
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 153/274 (55%), Gaps = 30/274 (10%)
Query: 10 GVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQ 69
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 155 GISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGL 212
Query: 70 TRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLES 129
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 213 IWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR------------------ 254
Query: 130 LSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSV 189
+ + V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+V
Sbjct: 255 -TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNV 313
Query: 190 SCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLT 249
ER + V+C S ++K A+ AA +++ G +P SGA HD++ ++ +
Sbjct: 314 RVTTERLQEMPPVLC----SDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPIC 365
Query: 250 KVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 283
+GM+FVR + G+SHSPAE +D AAG VL
Sbjct: 366 PIGMIFVRSQDGVSHSPAEWSTKEDC-AAGAEVL 398
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=3 SV=2
Length = 409
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 30/274 (10%)
Query: 10 GVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQ 69
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 155 GISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAGL 212
Query: 70 TRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLES 129
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 213 IWVKFTIAGPAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR------------------ 254
Query: 130 LSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSV 189
+ + V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+V
Sbjct: 255 -TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNV 313
Query: 190 SCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLT 249
ER + V+C S +K A+ A K++ G +P SGA HD + ++ +
Sbjct: 314 RLTTERLQEMAPVLC----SEVVKQAAERACKQL-GYPPFWLP---SGAAHDGVQLAPIC 365
Query: 250 KVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 283
+GM+FVR + G+SHSPAE +D A G VL
Sbjct: 366 PIGMIFVRSQDGVSHSPAEWSTKEDC-AVGAEVL 398
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC
PE=1 SV=1
Length = 411
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 114/245 (46%), Gaps = 27/245 (11%)
Query: 42 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAEL 101
++E+HIEQG VLE G +GVV I GQ R VT+ G HAGT PM R+D + A
Sbjct: 186 FVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA---- 241
Query: 102 IVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDL 161
R+C + + + LV T G++ P+ NV+PG+ TFT+D
Sbjct: 242 ---FSRICHQ-----------SVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDC 287
Query: 162 RAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALK 221
R D A +L N + IC++ + ++ D V + +L A L
Sbjct: 288 RHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKEL--------VATLT 339
Query: 222 RMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLA 281
+ + V+ SGAGHDA + M+F+ GISH+PAE D+ A G+
Sbjct: 340 ELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDL-AEGVK 398
Query: 282 VLAFL 286
LA +
Sbjct: 399 TLALM 403
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1
Length = 411
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 31 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSM 90
Q K D + E+HIEQGP LE G +GVV GIA R V ++G H+G M
Sbjct: 175 QAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIRAIVKIKGQADHSGATAMHY 234
Query: 91 RQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNV 150
R D + +EL + +ER S V TVG I++ P NV
Sbjct: 235 RHDALLGGSELSLAIERAAIQA------------------GHSTVATVGNITAKPGVMNV 276
Query: 151 IPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSS 210
+PG VD+R R++V L ++ ++ EKR + ++ N ++ ++ +
Sbjct: 277 VPGYCELLVDIRGTHVQARDSVFELLQEEISKVSEKRGLLIELQLISKDNPIILPENMVN 336
Query: 211 QLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHV 270
Q+ +++ G + +P SGAGHDAM M+ L GM+F+ GISH+P E
Sbjct: 337 QIAETAHS-----LGYSYEIMP---SGAGHDAMHMATLCPTGMIFIPSHLGISHNPLEFT 388
Query: 271 LDDDVWAAGLAVL 283
D+ AG+ VL
Sbjct: 389 DWKDI-EAGIKVL 400
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF
PE=2 SV=1
Length = 412
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 131/263 (49%), Gaps = 32/263 (12%)
Query: 9 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 68
SGV++ A+ E+ + + Q Y + ++E+HIEQG LE G LG+V IAG
Sbjct: 160 SGVSLQTAMHESGFG---KGVFQSAYR-TDISAFVELHIEQGKTLEMSGRDLGIVTSIAG 215
Query: 69 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE 128
Q R VT+ G HAGT M R+DP+ A++ +I L L D
Sbjct: 216 QRRYLVTLEGECNHAGTTSMKWRKDPLAASSRIIHEL---------LLRSD--------- 257
Query: 129 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 188
L L T G+I++ P+ +NVIPG V F++D+R E ++ + IC ++
Sbjct: 258 ELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKG 317
Query: 189 VSCIVERKHDANAVMCDADLSSQLKSASY-AALKRMTGATQHEIPVIMSGAGHDAMAMSH 247
+ +++ V D +LK+A++ AL+ G + E ++SGAGHDA +
Sbjct: 318 IRAVIDEYMRIEPVPMD----ERLKAAAFETALE--NGFSCEE---MVSGAGHDAQMIGR 368
Query: 248 LTKVGMLFVRCRGGISHSPAEHV 270
MLFV RGG+SHSP E+
Sbjct: 369 RYPACMLFVPSRGGVSHSPKEYT 391
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1
Length = 438
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 44/274 (16%)
Query: 10 GVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQ 69
GV+V DAL +I+ + + P + Y E+HIEQG LE +G+V
Sbjct: 174 GVSVRDAL--AAINGIGDREVFSSTGPRQLAAYAEIHIEQGRELEKNNVTIGLVDRTWAA 231
Query: 70 TRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLES 129
+ ++ V G QGH G + RQD + AA ++V L + +
Sbjct: 232 NKYELNVVGIQGHTGATAIEDRQDALLGAALIVVALRDIA------------------DE 273
Query: 130 LSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSV 189
L + G+++ P++ V+P EV +DLR+ +D L ++ + E R+
Sbjct: 274 FGEELHTSCGQLTVLPNSPVVVPREVHMHLDLRSDNDELLAAADAALRRRIAE-AEIRAG 332
Query: 190 SCIVERK--------HDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHD 241
+ RK + V D ++ L +S ++ + AGHD
Sbjct: 333 VKVEHRKAHVWPGHHYQPQGVELARDAANDLGISSM---------------LVQTRAGHD 377
Query: 242 AMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDV 275
+ M + MLFV GISH+ AE+ D+D+
Sbjct: 378 STNMKEIVPSVMLFVPSVEGISHAEAEYTSDEDL 411
>sp|B1MZM9|DAPEL_LEUCK N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain
KM20) GN=LCK_01154 PE=3 SV=1
Length = 387
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 66 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 125
AG LKV V G+ GHA ++ +DP+ AAELI+ L+ + D ++
Sbjct: 179 FAGTAELKVDVIGTGGHAAYPHLA--KDPIVIAAELIIQLQTVVSRSVDPIA-------- 228
Query: 126 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVL 173
V +VG I+ A+NVIP +V F +R++ G ET+L
Sbjct: 229 -------GGVVSVGVINGG-FANNVIPDQVHFEGTVRSMTRTGLETML 268
>sp|P45493|HIPO_CAMJE Hippurate hydrolase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=hipO PE=3 SV=2
Length = 383
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 52 VLEWVGFPLG------VVQG--IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIV 103
V W P G + +G +A + V G GH G+ P + DP+ AA+ LIV
Sbjct: 157 VFGWHNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGH-GSAPEKAK-DPIYAASLLIV 214
Query: 104 LLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRA 163
L+ + D +S V ++G ++ A N+IP T + +RA
Sbjct: 215 ALQSIVSRNVD---------------PQNSAVVSIGAFNAG-HAFNIIPDIATIKMSVRA 258
Query: 164 IDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAV 202
+D+ R+ ++Y+IC+ + + +E K + N V
Sbjct: 259 LDNETRKLT----EEKIYKICKGIAQANDIEIKINKNVV 293
>sp|Q1GTU1|G6PI_SPHAL Glucose-6-phosphate isomerase OS=Sphingopyxis alaskensis (strain
DSM 13593 / LMG 18877 / RB2256) GN=pgi PE=3 SV=1
Length = 501
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 129 SLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI---CE 185
SL SS+ W + ++++ G R D A +L ++Q+Y C+
Sbjct: 250 SLWSSIGFPAALALGWDAFADLLEGAAEMDRHFRLADGADNICLLAAFADQVYANRLGCQ 309
Query: 186 KRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGA--TQHEIPVIMSGAGHDAM 243
R+V ER A + ++ S KS + + GA QH PV G G DA
Sbjct: 310 TRAVFAYDERLRLLPAYLQQLEMESNGKSVT------LDGAPLAQHSAPVTWGGVGTDAQ 363
Query: 244 -AMSHLTKVGMLFVRCRGGISHSPAEHVLDD 273
A+ L G V ++ P +H+LDD
Sbjct: 364 HAVFQLLHQGTHLVPVEFIVAREP-DHLLDD 393
>sp|P23658|GUNC_BUTFI Cellodextrinase OS=Butyrivibrio fibrisolvens GN=ced1 PE=3 SV=1
Length = 547
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 147 ASNVIPGEVTFTVDLRAIDDAGR--------ETVLYELSNQLYQICEKRSVSCIVERKHD 198
++ I GE T+ D A+ + G+ E+VL+ +SN Y K C
Sbjct: 47 GTDEISGEDTYVADFSALTEEGKYKIVADGQESVLFSISNDAYDKLMKDICKCFY----- 101
Query: 199 ANAVMCDADLSSQLKSASYAALKRMTGAT---QHEIPVIMSGAGHDAMAMSHLTKVGMLF 255
+ C LS + Y MT AT + PV ++G HDA + G +
Sbjct: 102 --YLRCGDALSKEFAGEYYHKPCHMTKATVYGEDVEPVDVTGGWHDAGDYGRYSTAGAVA 159
Query: 256 V 256
V
Sbjct: 160 V 160
>sp|Q9SWX9|ILL5_ARATH IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsis thaliana
GN=ILL5 PE=3 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 66 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 125
+AG R K T+ G GHA ++ DP+ AA+ +I+ L+ L D L S
Sbjct: 212 MAGSGRFKATISGKGGHAALPQFAI--DPVLAASNVILSLQHLVSREADPLD----SQVV 265
Query: 126 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAI 164
T+ + S A NVIP VT RA+
Sbjct: 266 TVATFEGS------------DAFNVIPDSVTIGGTFRAL 292
>sp|P54955|YXEP_BACSU Uncharacterized hydrolase YxeP OS=Bacillus subtilis (strain 168)
GN=yxeP PE=1 SV=2
Length = 380
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 60 LGVVQG--IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLS 117
+GV +G +A R ++ ++G GHAG S+ DP+ AA ++I L+ +
Sbjct: 168 IGVKEGPLMASVDRFEIVIKGKGGHAGIPNNSI--DPIAAAGQIISGLQSVVSR------ 219
Query: 118 YDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETV 172
N S+L++ S + V +SW NVIP + +R R+ V
Sbjct: 220 -----NISSLQNAVVS-ITRVQAGTSW----NVIPDQAEMEGTVRTFQKEARQAV 264
>sp|Q98D57|DAPE_RHILO Succinyl-diaminopimelate desuccinylase OS=Rhizobium loti (strain
MAFF303099) GN=dapE PE=3 SV=1
Length = 397
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 65 GIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI--VLLERLCKHPKDFLSYDGRS 122
G G +TV G QGHA ++ +P+ L+ +L K KDF
Sbjct: 184 GRRGSLSGSITVNGRQGHAAYPQLA--DNPVRGLMGLVDALLHPVFDKGTKDF------- 234
Query: 123 NCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQ 182
+ LE S VG A+NVIP + T T ++R D ETV E+ N+L Q
Sbjct: 235 QPTNLEVTS----IDVGN-----PATNVIPAKATATFNIRFNDTWTAETVQAEIHNRLDQ 285
Query: 183 ICEKRS 188
+++
Sbjct: 286 AAKRKK 291
>sp|Q03YE3|DAPEL_LEUMM N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides
subsp. mesenteroides (strain ATCC 8293 / NCDO 523)
GN=LEUM_0669 PE=3 SV=1
Length = 384
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 35/152 (23%)
Query: 66 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCS 125
AG L++ + G GHA + +DP+ +AELI+LL+ + +D +G
Sbjct: 178 FAGTAELEIDIHGQGGHAAYP--HLGKDPIVISAELIMLLQTVVS--RDVDPIEGG---- 229
Query: 126 TLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICE 185
V ++G IS +NVIP V +R++ G L +++ ++ QI E
Sbjct: 230 ---------VVSLGMISGG-FTNNVIPDTVHLAGTVRSMTKDG----LDKMTTRIRQIVE 275
Query: 186 KRSVSCIVERKHDANAVMCDADLSSQLKSASY 217
A+ D ++ +L++ SY
Sbjct: 276 -------------GVALANDVKINVRLETGSY 294
>sp|A9ILD7|DAPE_BART1 Succinyl-diaminopimelate desuccinylase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=dapE PE=3 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 74 VTVRGSQGHAGTVPMSMRQ-DPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS 132
+TV+G QGH V R +P+ A++LI L ++ G N S
Sbjct: 192 ITVKGRQGH---VAFPERAANPLPLASKLIQALTQIALD-------QGTENFQ-----PS 236
Query: 133 SLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 188
+L T I + A NVIP + T ++R D +ET++ E+ +L + EK +
Sbjct: 237 NLELTT--IDTGNLAVNVIPAQTTVRFNIRYNDLWTKETLMEEIEKRLSLVQEKNN 290
>sp|Q851L6|ILL4_ORYSJ IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp.
japonica GN=ILL4 PE=2 SV=1
Length = 414
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 27/136 (19%)
Query: 58 FPLGVVQG-----IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHP 112
P GVV +AG R T+ G GHA +++ DP+ AA+ ++ L+++
Sbjct: 174 LPAGVVGSRPGPFLAGSARFTATITGKGGHAAEPHLAV--DPIVAASSAVLSLQQIVARE 231
Query: 113 KDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETV 172
+ L V +V I A NVIP VT LR++ G
Sbjct: 232 TNPL---------------QGAVVSVTTIKGG-EAFNVIPESVTLGGTLRSMTTDG---- 271
Query: 173 LYELSNQLYQICEKRS 188
L L N++ ++ E ++
Sbjct: 272 LSYLMNRIREVIEGQA 287
>sp|A6L012|SPEA_BACV8 Biosynthetic arginine decarboxylase OS=Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154) GN=speA PE=3 SV=1
Length = 630
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 174 YELSNQLYQICEKRSVSCIVERKHDANAVMCDA-DLSSQ--LKSASYAALKRMTGATQHE 230
+EL ++LY+I + + S +VE HDA + +A DL S + + A ++R+ + E
Sbjct: 371 HELVHELYEIWDNLNQSRMVEAWHDAQQIREEALDLFSHGIVDLKTRAQIERLYWSVTRE 430
Query: 231 IPVIMSGAGHDAMAMSHLTKV 251
I I SG H L K+
Sbjct: 431 INQIASGLKHAPDEFRKLDKL 451
>sp|P54983|AMHX_BACSU Amidohydrolase AmhX OS=Bacillus subtilis (strain 168) GN=amhX PE=3
SV=3
Length = 383
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 147 ASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDA 206
+SN+IPG+ +F++DLRA + E ++ E + ++H A A
Sbjct: 229 SSNIIPGKASFSLDLRAQTNEAMEALIAETERACEAAAAAFGAKIELHKEHSLPA----A 284
Query: 207 DLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHD----AMAMSHLTKVGMLFVRC--RG 260
+ + ++ A+ + GA + + P++ +G G D A+ + +L K ML + C +
Sbjct: 285 TQNKEAEAIMAEAITEIIGAERLDDPLVTTG-GEDFHFYAVKVPNL-KTTMLGLGCGLQP 342
Query: 261 GISHSPAEHVLDDDVWAAGLAVLA 284
G+ H D + G+ +LA
Sbjct: 343 GLHHP--HMTFDRNAMFTGIHILA 364
>sp|Q851L5|ILL3_ORYSJ IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp.
japonica GN=ILL3 PE=2 SV=1
Length = 417
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 23/117 (19%)
Query: 57 GFPLGVVQG-----IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKH 111
G P GVV +AG R T+ G GHA ++ DP+ A + ++ L+++
Sbjct: 178 GLPAGVVASRPGPFLAGSARFTATINGKGGHAAAPHHAV--DPIVAVSSAVLSLQQIVAR 235
Query: 112 PKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAG 168
D L V +V I A NVIP VT LR++ G
Sbjct: 236 ETDPL---------------QGAVVSVTTIKGG-EAFNVIPESVTLGGTLRSMTTDG 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,773,240
Number of Sequences: 539616
Number of extensions: 4075567
Number of successful extensions: 9917
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9884
Number of HSP's gapped (non-prelim): 35
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)