Query 022923
Match_columns 290
No_of_seqs 403 out of 1837
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 5.7E-22 1.2E-26 164.6 10.9 105 101-208 44-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 4.7E-21 1E-25 152.3 12.5 89 115-206 17-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 1.1E-20 2.3E-25 149.0 13.7 98 106-206 2-102 (103)
4 PF00085 Thioredoxin: Thioredo 99.9 1.6E-20 3.5E-25 145.3 13.3 99 105-206 4-103 (103)
5 cd02954 DIM1 Dim1 family; Dim1 99.8 8.9E-21 1.9E-25 152.3 10.4 77 107-183 2-79 (114)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.2E-20 6.9E-25 145.0 12.2 98 100-202 2-100 (101)
7 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.5E-20 7.5E-25 145.3 12.3 101 100-203 2-104 (104)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.7E-20 8E-25 148.9 12.7 101 99-202 9-112 (113)
9 PHA02278 thioredoxin-like prot 99.8 3.9E-20 8.4E-25 146.4 12.2 94 105-202 2-100 (103)
10 cd02999 PDI_a_ERp44_like PDIa 99.8 3.1E-20 6.6E-25 145.9 11.3 93 108-203 7-100 (100)
11 PLN00410 U5 snRNP protein, DIM 99.8 1E-19 2.2E-24 151.4 13.3 106 101-207 5-120 (142)
12 cd02948 TRX_NDPK TRX domain, T 99.8 1.5E-19 3.3E-24 142.1 12.9 98 102-205 2-101 (102)
13 cd02956 ybbN ybbN protein fami 99.8 1E-19 2.3E-24 140.4 11.5 94 109-204 2-96 (96)
14 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.2E-19 4.8E-24 142.0 12.0 100 100-203 2-108 (108)
15 cd02963 TRX_DnaJ TRX domain, D 99.8 2.1E-19 4.6E-24 143.5 11.6 99 106-206 10-111 (111)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.8 5.6E-19 1.2E-23 141.8 13.5 84 98-183 3-86 (113)
17 cd02986 DLP Dim1 family, Dim1- 99.8 5.2E-19 1.1E-23 141.5 13.1 100 107-206 2-110 (114)
18 COG3118 Thioredoxin domain-con 99.8 2.7E-19 5.7E-24 163.2 11.9 107 100-209 24-132 (304)
19 cd02994 PDI_a_TMX PDIa family, 99.8 9.7E-19 2.1E-23 136.3 12.8 98 100-205 2-101 (101)
20 KOG0908 Thioredoxin-like prote 99.8 3.2E-19 6.9E-24 158.3 10.9 106 100-208 2-107 (288)
21 cd02957 Phd_like Phosducin (Ph 99.8 9.5E-19 2.1E-23 140.0 12.7 83 99-183 4-87 (113)
22 cd03065 PDI_b_Calsequestrin_N 99.8 7.8E-19 1.7E-23 142.6 11.3 103 100-207 10-119 (120)
23 PRK09381 trxA thioredoxin; Pro 99.8 3.7E-18 8.1E-23 134.9 13.4 104 100-207 4-108 (109)
24 PTZ00051 thioredoxin; Provisio 99.8 5.9E-18 1.3E-22 130.9 12.7 95 101-200 2-96 (98)
25 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.3E-18 9.3E-23 134.0 11.8 99 102-203 3-108 (109)
26 cd03001 PDI_a_P5 PDIa family, 99.8 6.9E-18 1.5E-22 131.2 12.8 100 101-203 2-102 (103)
27 cd02984 TRX_PICOT TRX domain, 99.8 5.3E-18 1.2E-22 130.8 12.0 95 106-203 1-96 (97)
28 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.9E-18 8.4E-23 132.4 11.2 93 106-203 6-102 (102)
29 PRK10996 thioredoxin 2; Provis 99.8 6.9E-18 1.5E-22 140.2 13.3 102 101-207 37-139 (139)
30 cd02987 Phd_like_Phd Phosducin 99.8 9.8E-18 2.1E-22 144.7 13.5 108 98-206 61-174 (175)
31 TIGR01126 pdi_dom protein disu 99.8 1E-17 2.2E-22 129.6 11.6 98 106-207 2-102 (102)
32 cd02962 TMX2 TMX2 family; comp 99.8 1.3E-17 2.7E-22 140.8 13.1 84 99-183 28-119 (152)
33 cd02993 PDI_a_APS_reductase PD 99.8 8.9E-18 1.9E-22 133.4 11.4 102 101-203 3-109 (109)
34 PTZ00443 Thioredoxin domain-co 99.8 2E-17 4.3E-22 147.9 14.5 107 99-208 30-140 (224)
35 cd02997 PDI_a_PDIR PDIa family 99.7 2.2E-17 4.7E-22 128.5 11.7 98 101-203 2-104 (104)
36 TIGR01068 thioredoxin thioredo 99.7 4E-17 8.7E-22 125.6 12.6 98 107-207 3-101 (101)
37 cd03000 PDI_a_TMX3 PDIa family 99.7 2E-17 4.3E-22 130.1 10.5 93 108-206 7-103 (104)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.2E-17 7E-22 127.3 10.6 98 102-203 3-104 (104)
39 cd02953 DsbDgamma DsbD gamma f 99.7 2.1E-17 4.4E-22 129.7 9.5 95 108-204 2-104 (104)
40 cd02965 HyaE HyaE family; HyaE 99.7 3.1E-17 6.7E-22 131.1 10.4 91 106-200 16-109 (111)
41 cd02998 PDI_a_ERp38 PDIa famil 99.7 4E-17 8.8E-22 126.8 10.2 100 101-203 2-105 (105)
42 cd02950 TxlA TRX-like protein 99.7 9.2E-17 2E-21 134.0 12.4 98 108-209 11-112 (142)
43 cd02961 PDI_a_family Protein D 99.7 1.3E-16 2.8E-21 121.8 10.6 95 106-203 4-101 (101)
44 KOG0190 Protein disulfide isom 99.7 6.1E-17 1.3E-21 157.7 10.8 105 100-209 26-134 (493)
45 cd02949 TRX_NTR TRX domain, no 99.7 3E-16 6.6E-21 121.9 11.8 92 110-204 5-97 (97)
46 cd02975 PfPDO_like_N Pyrococcu 99.7 2.5E-16 5.3E-21 126.4 10.9 95 110-207 15-110 (113)
47 TIGR00424 APS_reduc 5'-adenyly 99.7 4.1E-16 8.9E-21 152.2 13.9 106 100-206 352-462 (463)
48 PLN02309 5'-adenylylsulfate re 99.7 3.8E-16 8.2E-21 152.4 13.5 106 100-206 346-456 (457)
49 KOG4277 Uncharacterized conser 99.7 1.1E-16 2.4E-21 145.7 8.2 125 109-239 32-161 (468)
50 cd03007 PDI_a_ERp29_N PDIa fam 99.7 4.7E-16 1E-20 125.3 10.2 96 105-206 6-115 (116)
51 cd02988 Phd_like_VIAF Phosduci 99.7 1E-15 2.2E-20 134.0 12.8 106 97-206 80-191 (192)
52 cd02952 TRP14_like Human TRX-r 99.7 1E-15 2.2E-20 124.1 10.8 97 103-202 5-117 (119)
53 cd02992 PDI_a_QSOX PDIa family 99.7 1.4E-15 3E-20 122.1 11.5 100 101-202 3-111 (114)
54 TIGR01130 ER_PDI_fam protein d 99.6 2.3E-15 4.9E-20 145.9 14.7 121 106-234 7-132 (462)
55 cd02947 TRX_family TRX family; 99.6 1.8E-15 4E-20 113.0 10.8 91 109-203 2-92 (93)
56 TIGR01295 PedC_BrcD bacterioci 99.6 2.3E-15 4.9E-20 122.6 12.1 95 105-204 11-121 (122)
57 cd02951 SoxW SoxW family; SoxW 99.6 2.4E-15 5.3E-20 121.8 11.3 99 108-208 4-120 (125)
58 PTZ00062 glutaredoxin; Provisi 99.6 6E-15 1.3E-19 130.1 12.8 117 105-238 4-120 (204)
59 PTZ00102 disulphide isomerase; 99.6 8.6E-15 1.9E-19 143.3 14.4 103 101-209 34-140 (477)
60 PTZ00102 disulphide isomerase; 99.6 5.9E-15 1.3E-19 144.4 12.8 106 101-209 359-467 (477)
61 KOG0190 Protein disulfide isom 99.6 2.1E-15 4.5E-20 147.0 7.8 99 106-208 372-474 (493)
62 PRK00293 dipZ thiol:disulfide 99.5 4.6E-14 1E-18 142.0 13.3 107 100-207 453-570 (571)
63 cd02982 PDI_b'_family Protein 99.5 4.8E-14 1E-18 109.7 9.8 88 119-206 12-102 (103)
64 KOG0912 Thiol-disulfide isomer 99.5 5.3E-14 1.1E-18 128.4 7.4 99 108-209 4-108 (375)
65 cd02959 ERp19 Endoplasmic reti 99.5 5.9E-14 1.3E-18 113.4 6.2 90 117-207 17-113 (117)
66 TIGR02187 GlrX_arch Glutaredox 99.5 1.3E-12 2.8E-17 116.0 14.2 89 118-208 18-112 (215)
67 TIGR00411 redox_disulf_1 small 99.5 5.6E-13 1.2E-17 99.4 9.8 79 122-206 2-81 (82)
68 TIGR02740 TraF-like TraF-like 99.4 1.2E-12 2.6E-17 120.5 13.3 92 116-208 163-265 (271)
69 TIGR01130 ER_PDI_fam protein d 99.4 4.1E-13 9E-18 130.1 10.8 100 106-209 352-456 (462)
70 PHA02125 thioredoxin-like prot 99.4 7.1E-13 1.5E-17 98.5 9.4 72 123-203 2-73 (75)
71 TIGR02738 TrbB type-F conjugat 99.4 1.4E-12 3E-17 110.3 11.8 88 118-206 49-152 (153)
72 TIGR02187 GlrX_arch Glutaredox 99.4 2E-12 4.3E-17 114.8 11.1 90 111-205 125-214 (215)
73 COG4232 Thiol:disulfide interc 99.4 8E-13 1.7E-17 130.4 6.1 103 102-206 457-567 (569)
74 KOG0191 Thioredoxin/protein di 99.3 2.6E-12 5.7E-17 123.4 9.3 98 109-209 38-136 (383)
75 PRK15412 thiol:disulfide inter 99.3 1.2E-11 2.5E-16 107.4 11.4 86 118-207 67-176 (185)
76 cd02955 SSP411 TRX domain, SSP 99.3 1.2E-11 2.7E-16 101.0 10.3 74 108-183 6-91 (124)
77 PF13098 Thioredoxin_2: Thiore 99.3 3.9E-12 8.5E-17 100.5 6.9 85 117-203 3-112 (112)
78 PRK14018 trifunctional thiored 99.3 1.3E-11 2.8E-16 122.3 11.7 88 117-206 54-172 (521)
79 TIGR00412 redox_disulf_2 small 99.3 1.2E-11 2.7E-16 92.2 8.5 72 123-203 2-75 (76)
80 cd02973 TRX_GRX_like Thioredox 99.3 1E-11 2.2E-16 89.6 7.0 59 123-183 3-61 (67)
81 TIGR00385 dsbE periplasmic pro 99.3 2.8E-11 6.1E-16 103.8 10.7 86 118-207 62-171 (173)
82 PF13905 Thioredoxin_8: Thiore 99.3 2.2E-11 4.8E-16 93.4 8.9 65 119-183 1-93 (95)
83 cd03010 TlpA_like_DsbE TlpA-li 99.3 3.3E-11 7.1E-16 97.5 9.9 79 118-199 24-126 (127)
84 cd03008 TryX_like_RdCVF Trypar 99.3 2.7E-11 5.9E-16 101.6 9.0 71 118-189 24-128 (146)
85 PRK03147 thiol-disulfide oxido 99.2 6.7E-11 1.5E-15 100.3 11.4 88 118-206 60-171 (173)
86 cd03009 TryX_like_TryX_NRX Try 99.2 2.7E-11 5.9E-16 98.6 8.3 66 118-183 17-111 (131)
87 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.3E-10 2.8E-15 89.5 10.5 77 118-200 11-87 (89)
88 cd02964 TryX_like_family Trypa 99.2 5.9E-11 1.3E-15 97.1 8.7 65 118-182 16-109 (132)
89 KOG0191 Thioredoxin/protein di 99.2 9.6E-11 2.1E-15 112.6 9.9 106 101-209 146-254 (383)
90 KOG1731 FAD-dependent sulfhydr 99.2 1.6E-11 3.5E-16 120.3 3.2 78 104-182 43-126 (606)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.7E-10 3.7E-15 92.4 8.7 82 118-202 19-121 (123)
92 PLN02919 haloacid dehalogenase 99.1 1.8E-10 3.8E-15 123.4 10.8 88 118-207 419-536 (1057)
93 cd02966 TlpA_like_family TlpA- 99.1 3.4E-10 7.3E-15 87.5 9.2 65 118-182 18-107 (116)
94 PRK13728 conjugal transfer pro 99.1 6.5E-10 1.4E-14 96.3 11.1 85 123-208 73-172 (181)
95 cd02958 UAS UAS family; UAS is 99.1 1.2E-09 2.6E-14 87.2 10.2 91 117-207 15-111 (114)
96 PRK11509 hydrogenase-1 operon 99.0 2.8E-09 6E-14 87.8 10.6 98 108-209 25-126 (132)
97 PF13899 Thioredoxin_7: Thiore 99.0 7.9E-10 1.7E-14 83.3 6.3 63 117-180 15-81 (82)
98 cd03012 TlpA_like_DipZ_like Tl 99.0 2.2E-09 4.8E-14 87.0 9.3 72 118-190 22-122 (126)
99 PF02114 Phosducin: Phosducin; 99.0 3.7E-09 8E-14 97.0 10.4 109 98-207 124-238 (265)
100 cd02967 mauD Methylamine utili 99.0 1.3E-09 2.8E-14 86.1 6.2 63 118-180 20-103 (114)
101 PF08534 Redoxin: Redoxin; In 98.9 5.1E-09 1.1E-13 86.5 9.7 83 118-201 27-144 (146)
102 TIGR02661 MauD methylamine deh 98.9 8E-09 1.7E-13 90.0 11.3 86 118-206 73-178 (189)
103 KOG1672 ATP binding protein [P 98.9 2.5E-09 5.3E-14 92.4 7.7 110 93-204 60-175 (211)
104 COG0526 TrxA Thiol-disulfide i 98.9 6.6E-09 1.4E-13 79.2 8.3 83 119-203 32-120 (127)
105 PTZ00056 glutathione peroxidas 98.9 8E-09 1.7E-13 90.9 9.7 90 118-208 38-179 (199)
106 TIGR01626 ytfJ_HI0045 conserve 98.9 8.3E-09 1.8E-13 89.7 9.5 84 118-203 58-176 (184)
107 PLN02399 phospholipid hydroper 98.9 1.3E-08 2.8E-13 91.9 10.9 89 118-207 98-234 (236)
108 cd02960 AGR Anterior Gradient 98.9 1.3E-08 2.9E-13 83.6 9.6 67 116-183 20-90 (130)
109 smart00594 UAS UAS domain. 98.8 2.6E-08 5.6E-13 80.8 10.3 87 117-203 25-121 (122)
110 cd02969 PRX_like1 Peroxiredoxi 98.8 6E-08 1.3E-12 82.6 11.2 91 118-209 24-154 (171)
111 cd01659 TRX_superfamily Thiore 98.8 3.8E-08 8.3E-13 66.8 7.3 60 123-182 1-63 (69)
112 PF13728 TraF: F plasmid trans 98.7 1.1E-07 2.4E-12 84.7 11.8 92 111-203 112-214 (215)
113 TIGR02540 gpx7 putative glutat 98.7 8.6E-08 1.9E-12 80.4 10.2 87 118-206 21-152 (153)
114 PLN02412 probable glutathione 98.7 8.3E-08 1.8E-12 82.0 9.9 90 118-208 28-165 (167)
115 TIGR02196 GlrX_YruB Glutaredox 98.7 5.4E-08 1.2E-12 70.1 7.4 69 123-204 2-74 (74)
116 TIGR02200 GlrX_actino Glutared 98.7 1.1E-07 2.4E-12 69.6 7.9 70 123-204 2-76 (77)
117 KOG0914 Thioredoxin-like prote 98.7 3.5E-08 7.7E-13 86.8 5.7 84 100-183 125-216 (265)
118 cd00340 GSH_Peroxidase Glutath 98.6 1.6E-07 3.5E-12 78.7 8.4 41 118-159 21-63 (152)
119 PF14595 Thioredoxin_9: Thiore 98.6 4.5E-07 9.7E-12 74.6 9.5 75 108-182 30-107 (129)
120 PF06110 DUF953: Eukaryotic pr 98.5 7E-07 1.5E-11 72.4 9.5 97 104-203 2-117 (119)
121 PRK00522 tpx lipid hydroperoxi 98.5 9.6E-07 2.1E-11 75.4 10.8 57 118-174 43-123 (167)
122 TIGR02739 TraF type-F conjugat 98.5 1.2E-06 2.6E-11 80.0 11.7 96 112-208 143-249 (256)
123 KOG0911 Glutaredoxin-related p 98.5 1.7E-07 3.7E-12 82.9 5.9 100 101-207 3-102 (227)
124 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 6.6E-07 1.4E-11 71.3 8.1 66 118-183 24-119 (124)
125 cd03017 PRX_BCP Peroxiredoxin 98.5 9.1E-07 2E-11 72.2 9.0 84 118-202 22-138 (140)
126 cd03014 PRX_Atyp2cys Peroxired 98.5 8.5E-07 1.9E-11 73.0 8.8 63 118-180 25-117 (143)
127 KOG3414 Component of the U4/U6 98.4 2.3E-06 4.9E-11 69.3 10.0 106 102-207 6-120 (142)
128 KOG0913 Thiol-disulfide isomer 98.4 6.2E-08 1.3E-12 86.1 1.1 95 105-206 29-125 (248)
129 KOG2501 Thioredoxin, nucleored 98.4 2.6E-07 5.6E-12 77.9 4.5 66 118-183 32-126 (157)
130 PF13192 Thioredoxin_3: Thiore 98.4 3E-06 6.6E-11 62.9 9.0 73 124-204 3-76 (76)
131 PTZ00256 glutathione peroxidas 98.4 2.3E-06 5.1E-11 74.1 9.7 89 118-207 39-181 (183)
132 cd03015 PRX_Typ2cys Peroxiredo 98.4 3.3E-06 7.2E-11 72.2 10.4 88 118-206 28-156 (173)
133 PRK13703 conjugal pilus assemb 98.4 4.5E-06 9.7E-11 75.9 11.4 90 118-208 142-242 (248)
134 TIGR03137 AhpC peroxiredoxin. 98.3 5.3E-06 1.2E-10 72.1 10.5 87 118-206 30-155 (187)
135 cd02991 UAS_ETEA UAS family, E 98.3 6E-06 1.3E-10 66.7 10.0 89 117-207 15-113 (116)
136 PRK11200 grxA glutaredoxin 1; 98.3 4.1E-06 8.8E-11 63.3 7.9 76 122-207 2-83 (85)
137 PF13848 Thioredoxin_6: Thiore 98.3 4.2E-05 9.1E-10 64.9 14.9 118 85-205 63-184 (184)
138 cd02970 PRX_like2 Peroxiredoxi 98.2 7.1E-06 1.5E-10 67.3 9.4 44 119-162 24-69 (149)
139 TIGR02180 GRX_euk Glutaredoxin 98.2 2.5E-06 5.4E-11 63.5 5.9 58 123-183 1-63 (84)
140 cd03018 PRX_AhpE_like Peroxire 98.2 1E-05 2.2E-10 66.8 9.6 84 119-204 28-148 (149)
141 PF11009 DUF2847: Protein of u 98.2 2.1E-05 4.6E-10 62.3 10.8 97 102-199 2-104 (105)
142 PRK09437 bcp thioredoxin-depen 98.2 1.3E-05 2.9E-10 66.8 10.0 79 118-198 29-144 (154)
143 COG2143 Thioredoxin-related pr 98.2 1.6E-05 3.6E-10 66.8 10.2 90 117-207 40-149 (182)
144 PRK13190 putative peroxiredoxi 98.2 1.5E-05 3.3E-10 70.2 10.4 89 118-207 26-154 (202)
145 PF03190 Thioredox_DsbH: Prote 98.1 1.4E-05 3E-10 68.1 9.0 74 108-183 28-113 (163)
146 PF02966 DIM1: Mitosis protein 98.1 6.8E-05 1.5E-09 61.4 12.3 104 102-206 3-116 (133)
147 cd02976 NrdH NrdH-redoxin (Nrd 98.1 1.2E-05 2.7E-10 57.5 7.3 67 123-202 2-72 (73)
148 PRK10382 alkyl hydroperoxide r 98.1 3E-05 6.6E-10 67.6 11.0 88 118-206 30-155 (187)
149 KOG3425 Uncharacterized conser 98.1 1.2E-05 2.6E-10 64.6 7.3 82 105-186 10-109 (128)
150 cd02968 SCO SCO (an acronym fo 98.1 1.8E-05 3.9E-10 64.6 8.2 42 118-159 21-68 (142)
151 PRK15000 peroxidase; Provision 98.1 3E-05 6.5E-10 68.3 9.9 88 118-206 33-161 (200)
152 TIGR03143 AhpF_homolog putativ 98.0 4.5E-05 9.7E-10 77.0 11.3 79 119-203 475-554 (555)
153 PRK10606 btuE putative glutath 98.0 2.7E-05 5.8E-10 67.8 8.3 41 118-159 24-66 (183)
154 cd02971 PRX_family Peroxiredox 98.0 3.8E-05 8.3E-10 62.4 8.7 42 118-159 21-65 (140)
155 PRK10877 protein disulfide iso 97.9 5E-05 1.1E-09 68.5 9.0 81 118-206 106-230 (232)
156 cd02981 PDI_b_family Protein D 97.9 0.0002 4.4E-09 54.8 11.1 94 102-205 2-96 (97)
157 PRK15317 alkyl hydroperoxide r 97.9 8E-05 1.7E-09 74.4 11.1 94 108-207 105-198 (517)
158 cd02983 P5_C P5 family, C-term 97.9 0.00042 9.1E-09 57.0 13.3 109 99-210 2-118 (130)
159 cd03023 DsbA_Com1_like DsbA fa 97.9 7.7E-05 1.7E-09 61.1 9.0 39 118-156 4-42 (154)
160 KOG3171 Conserved phosducin-li 97.9 3.5E-05 7.6E-10 67.9 7.0 106 100-207 139-251 (273)
161 PRK13189 peroxiredoxin; Provis 97.9 0.00012 2.5E-09 65.6 10.1 88 118-206 34-162 (222)
162 PTZ00137 2-Cys peroxiredoxin; 97.8 0.00016 3.5E-09 66.3 10.9 87 118-206 97-224 (261)
163 TIGR02183 GRXA Glutaredoxin, G 97.8 0.0001 2.2E-09 56.0 7.6 75 123-207 2-82 (86)
164 cd03016 PRX_1cys Peroxiredoxin 97.8 0.00016 3.4E-09 63.7 9.5 86 120-206 26-153 (203)
165 PRK13599 putative peroxiredoxi 97.8 0.00019 4.1E-09 64.0 10.1 88 118-206 27-155 (215)
166 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 7.5E-05 1.6E-09 65.2 7.3 77 118-203 76-197 (197)
167 PRK13191 putative peroxiredoxi 97.7 0.00026 5.6E-09 63.1 10.3 88 118-206 32-160 (215)
168 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00013 2.9E-09 53.9 5.9 56 123-183 2-62 (82)
169 TIGR03140 AhpF alkyl hydropero 97.6 0.00045 9.7E-09 69.1 11.1 92 109-206 107-198 (515)
170 PF01216 Calsequestrin: Calseq 97.6 0.00041 8.8E-09 65.4 9.5 103 100-209 35-146 (383)
171 PRK11657 dsbG disulfide isomer 97.6 0.00046 1E-08 62.9 9.7 84 118-204 116-249 (251)
172 PTZ00253 tryparedoxin peroxida 97.6 0.00052 1.1E-08 60.1 9.7 88 118-206 35-163 (199)
173 PF00462 Glutaredoxin: Glutare 97.6 0.00036 7.7E-09 49.0 6.8 54 123-183 1-58 (60)
174 TIGR02194 GlrX_NrdH Glutaredox 97.5 0.00057 1.2E-08 49.9 7.3 66 124-201 2-70 (72)
175 PF13462 Thioredoxin_4: Thiore 97.4 0.0022 4.8E-08 53.1 10.5 81 118-205 11-162 (162)
176 TIGR03143 AhpF_homolog putativ 97.4 0.0028 6.1E-08 64.0 13.1 118 108-229 355-473 (555)
177 cd02066 GRX_family Glutaredoxi 97.3 0.00066 1.4E-08 48.0 6.0 54 123-183 2-59 (72)
178 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.00075 1.6E-08 50.2 6.4 58 119-183 6-66 (79)
179 KOG3170 Conserved phosducin-li 97.3 0.0026 5.6E-08 55.8 10.2 108 97-207 89-201 (240)
180 PRK10329 glutaredoxin-like pro 97.3 0.0018 3.9E-08 48.7 8.2 72 123-207 3-77 (81)
181 PF07912 ERp29_N: ERp29, N-ter 97.2 0.0072 1.6E-07 49.1 11.5 97 108-208 12-120 (126)
182 PF05768 DUF836: Glutaredoxin- 97.2 0.0011 2.4E-08 49.7 6.5 80 123-204 2-81 (81)
183 PHA03050 glutaredoxin; Provisi 97.1 0.0012 2.7E-08 52.5 6.2 59 123-183 15-78 (108)
184 TIGR02181 GRX_bact Glutaredoxi 97.1 0.0014 2.9E-08 48.4 5.4 54 123-183 1-58 (79)
185 TIGR02189 GlrX-like_plant Glut 97.1 0.0018 4E-08 50.5 6.4 54 123-183 10-70 (99)
186 cd03418 GRX_GRXb_1_3_like Glut 96.9 0.0031 6.8E-08 45.7 6.3 54 123-183 2-60 (75)
187 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0032 7E-08 45.8 6.3 54 123-183 3-60 (73)
188 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.014 2.9E-07 46.6 9.8 97 108-208 7-109 (111)
189 cd03028 GRX_PICOT_like Glutare 96.8 0.0048 1E-07 47.2 6.9 58 119-183 7-72 (90)
190 cd02972 DsbA_family DsbA famil 96.8 0.0037 8E-08 46.5 6.2 58 123-180 1-91 (98)
191 TIGR00365 monothiol glutaredox 96.8 0.0069 1.5E-07 47.1 7.8 65 109-183 4-76 (97)
192 PRK10954 periplasmic protein d 96.8 0.0048 1E-07 54.4 7.6 38 119-156 37-78 (207)
193 cd03073 PDI_b'_ERp72_ERp57 PDI 96.8 0.018 3.8E-07 46.0 9.9 74 131-206 30-110 (111)
194 PRK10824 glutaredoxin-4; Provi 96.7 0.0058 1.3E-07 49.3 6.5 67 109-183 7-79 (115)
195 cd03066 PDI_b_Calsequestrin_mi 96.6 0.054 1.2E-06 42.1 11.7 98 101-206 2-100 (102)
196 cd03029 GRX_hybridPRX5 Glutare 96.6 0.0076 1.6E-07 43.7 6.3 54 123-183 3-59 (72)
197 KOG2603 Oligosaccharyltransfer 96.6 0.015 3.2E-07 54.3 9.4 109 98-208 39-167 (331)
198 PF13848 Thioredoxin_6: Thiore 96.5 0.022 4.9E-07 48.0 9.5 66 137-207 8-75 (184)
199 cd03069 PDI_b_ERp57 PDIb famil 96.5 0.053 1.1E-06 42.5 10.9 95 101-206 2-103 (104)
200 cd03067 PDI_b_PDIR_N PDIb fami 96.4 0.041 8.9E-07 43.3 9.4 100 101-205 3-110 (112)
201 PF07449 HyaE: Hydrogenase-1 e 96.2 0.0067 1.5E-07 48.3 4.1 79 101-183 11-93 (107)
202 COG0695 GrxC Glutaredoxin and 96.1 0.016 3.4E-07 43.5 5.8 66 123-200 3-74 (80)
203 PRK10638 glutaredoxin 3; Provi 96.1 0.018 4E-07 43.0 6.0 54 123-183 4-61 (83)
204 PTZ00062 glutaredoxin; Provisi 95.5 0.064 1.4E-06 47.5 7.7 58 119-183 112-177 (204)
205 PRK12759 bifunctional gluaredo 94.4 0.093 2E-06 51.2 6.4 54 123-183 4-69 (410)
206 PF00837 T4_deiodinase: Iodoth 94.3 0.33 7.2E-06 43.9 9.2 57 100-158 83-142 (237)
207 KOG1752 Glutaredoxin and relat 94.1 0.29 6.2E-06 38.8 7.5 66 109-183 6-76 (104)
208 KOG2640 Thioredoxin [Function 94.0 0.028 6.1E-07 52.4 1.7 97 109-208 66-163 (319)
209 cd03019 DsbA_DsbA DsbA family, 93.9 0.11 2.4E-06 43.6 5.2 41 118-158 14-55 (178)
210 cd03068 PDI_b_ERp72 PDIb famil 93.9 1.6 3.6E-05 34.3 11.5 97 101-206 2-107 (107)
211 cd03013 PRX5_like Peroxiredoxi 93.9 0.12 2.5E-06 43.5 5.2 52 119-170 29-88 (155)
212 PF13743 Thioredoxin_5: Thiore 93.6 0.21 4.5E-06 43.0 6.4 26 125-150 2-27 (176)
213 COG1225 Bcp Peroxiredoxin [Pos 92.8 0.26 5.6E-06 41.9 5.5 55 118-172 29-107 (157)
214 cd02974 AhpF_NTD_N Alkyl hydro 92.7 2.8 6E-05 32.5 10.8 85 108-205 8-92 (94)
215 COG1331 Highly conserved prote 92.4 0.28 6E-06 50.4 6.2 74 108-183 34-120 (667)
216 COG1651 DsbG Protein-disulfide 91.6 0.87 1.9E-05 40.6 7.9 39 161-206 204-242 (244)
217 PRK15317 alkyl hydroperoxide r 91.4 1.8 3.9E-05 43.3 10.7 106 108-229 8-113 (517)
218 TIGR03140 AhpF alkyl hydropero 90.6 4.1 8.9E-05 40.8 12.4 107 108-229 8-114 (515)
219 cd02978 KaiB_like KaiB-like fa 90.0 1.5 3.4E-05 32.3 6.5 57 123-179 4-62 (72)
220 cd03040 GST_N_mPGES2 GST_N fam 89.8 3.8 8.3E-05 29.4 8.6 75 123-207 2-76 (77)
221 cd02977 ArsC_family Arsenate R 89.4 0.52 1.1E-05 36.7 3.9 78 124-206 2-86 (105)
222 cd03031 GRX_GRX_like Glutaredo 89.3 1.3 2.7E-05 37.3 6.4 53 124-183 3-69 (147)
223 cd03036 ArsC_like Arsenate Red 88.6 0.58 1.3E-05 37.1 3.7 78 124-206 2-87 (111)
224 KOG2507 Ubiquitin regulatory p 88.5 7 0.00015 38.3 11.5 90 117-207 16-111 (506)
225 PF09673 TrbC_Ftype: Type-F co 87.6 4.5 9.8E-05 32.2 8.3 70 108-181 11-80 (113)
226 TIGR02654 circ_KaiB circadian 87.4 2.3 5.1E-05 32.5 6.2 60 120-179 3-64 (87)
227 PRK09301 circadian clock prote 87.2 2.3 4.9E-05 33.6 6.1 61 119-179 5-67 (103)
228 COG3634 AhpF Alkyl hydroperoxi 85.9 3.9 8.5E-05 39.5 8.1 92 108-205 105-196 (520)
229 cd03041 GST_N_2GST_N GST_N fam 85.4 5.5 0.00012 28.8 7.2 70 124-206 3-76 (77)
230 TIGR02742 TrbC_Ftype type-F co 83.2 4.1 9E-05 33.5 6.2 47 160-207 59-115 (130)
231 cd03060 GST_N_Omega_like GST_N 82.4 4.6 9.9E-05 28.6 5.6 52 124-178 2-54 (71)
232 cd03037 GST_N_GRX2 GST_N famil 82.0 3.8 8.1E-05 29.0 5.0 50 125-177 3-52 (71)
233 PHA03075 glutaredoxin-like pro 81.5 2.7 5.8E-05 33.9 4.3 29 120-148 2-30 (123)
234 COG3019 Predicted metal-bindin 81.1 3.6 7.8E-05 34.3 5.1 73 121-205 26-102 (149)
235 COG2761 FrnE Predicted dithiol 80.0 3.7 8E-05 37.0 5.2 41 163-209 175-215 (225)
236 TIGR01617 arsC_related transcr 79.9 3.8 8.2E-05 32.6 4.8 34 124-162 2-35 (117)
237 cd03035 ArsC_Yffb Arsenate Red 79.1 2.7 5.9E-05 33.0 3.7 32 124-160 2-33 (105)
238 PRK01655 spxA transcriptional 78.7 3.9 8.4E-05 33.4 4.6 35 123-162 2-36 (131)
239 PF06053 DUF929: Domain of unk 77.8 7.2 0.00016 35.7 6.5 58 117-181 56-114 (249)
240 PF13417 GST_N_3: Glutathione 77.5 23 0.00049 25.3 8.0 71 126-209 2-73 (75)
241 KOG2792 Putative cytochrome C 77.3 13 0.00029 34.2 7.9 90 118-207 138-275 (280)
242 PF01323 DSBA: DSBA-like thior 77.0 3.4 7.3E-05 34.9 4.0 39 160-204 155-193 (193)
243 COG3531 Predicted protein-disu 75.0 4.6 0.0001 35.7 4.2 44 162-207 164-209 (212)
244 cd00570 GST_N_family Glutathio 73.7 3 6.5E-05 28.1 2.4 51 125-178 3-55 (71)
245 PF07689 KaiB: KaiB domain; I 73.5 2 4.4E-05 32.5 1.5 52 128-179 5-58 (82)
246 PRK12559 transcriptional regul 70.1 7.7 0.00017 31.7 4.3 79 123-206 2-86 (131)
247 cd03051 GST_N_GTT2_like GST_N 69.8 7.5 0.00016 27.1 3.8 51 125-178 3-57 (74)
248 cd03032 ArsC_Spx Arsenate Redu 69.3 9.9 0.00022 30.1 4.7 34 123-161 2-35 (115)
249 PF01323 DSBA: DSBA-like thior 67.7 8.7 0.00019 32.4 4.4 35 122-156 1-35 (193)
250 PF02630 SCO1-SenC: SCO1/SenC; 67.6 19 0.00042 30.6 6.5 42 118-159 51-97 (174)
251 COG1999 Uncharacterized protei 64.8 29 0.00062 30.6 7.2 53 118-170 66-127 (207)
252 COG0450 AhpC Peroxiredoxin [Po 64.1 44 0.00095 29.4 8.0 88 119-206 33-160 (194)
253 cd03059 GST_N_SspA GST_N famil 63.9 24 0.00052 24.6 5.5 51 124-177 2-53 (73)
254 cd03074 PDI_b'_Calsequestrin_C 63.6 76 0.0017 25.5 11.1 90 117-206 18-119 (120)
255 KOG0912 Thiol-disulfide isomer 62.8 48 0.001 31.5 8.4 108 89-207 200-319 (375)
256 COG4545 Glutaredoxin-related p 61.8 16 0.00035 27.3 4.1 54 124-183 5-74 (85)
257 cd03045 GST_N_Delta_Epsilon GS 61.4 23 0.0005 24.8 5.0 51 124-177 2-56 (74)
258 PF04592 SelP_N: Selenoprotein 61.0 21 0.00045 32.4 5.5 45 115-159 22-71 (238)
259 PF09822 ABC_transp_aux: ABC-t 59.7 1.3E+02 0.0029 27.0 11.7 89 119-207 24-142 (271)
260 cd03024 DsbA_FrnE DsbA family, 59.6 10 0.00022 32.4 3.3 38 160-203 163-200 (201)
261 PRK13730 conjugal transfer pil 59.5 59 0.0013 28.9 8.0 42 161-205 151-192 (212)
262 PRK13344 spxA transcriptional 59.2 16 0.00036 29.8 4.3 33 123-160 2-34 (132)
263 cd03022 DsbA_HCCA_Iso DsbA fam 56.2 11 0.00024 31.7 3.0 36 161-203 156-191 (192)
264 cd03019 DsbA_DsbA DsbA family, 55.9 10 0.00022 31.5 2.6 22 160-183 131-152 (178)
265 KOG1422 Intracellular Cl- chan 54.0 81 0.0018 28.2 7.9 68 130-209 20-87 (221)
266 PF06491 Disulph_isomer: Disul 53.3 49 0.0011 27.4 6.0 101 100-205 17-130 (136)
267 cd03055 GST_N_Omega GST_N fami 52.6 36 0.00078 25.3 5.0 53 123-178 19-72 (89)
268 cd02990 UAS_FAF1 UAS family, F 52.3 1.3E+02 0.0029 24.8 9.9 89 117-207 19-133 (136)
269 PF04134 DUF393: Protein of un 52.1 20 0.00043 27.8 3.6 57 126-183 2-61 (114)
270 PF01216 Calsequestrin: Calseq 51.6 2.3E+02 0.0051 27.4 13.8 121 88-209 238-370 (383)
271 cd03025 DsbA_FrnE_like DsbA fa 49.4 21 0.00046 30.0 3.7 27 123-149 3-29 (193)
272 cd03025 DsbA_FrnE_like DsbA fa 43.7 14 0.00031 31.1 1.7 23 161-183 158-180 (193)
273 PF06953 ArsD: Arsenical resis 42.6 1.4E+02 0.003 24.3 7.1 63 137-206 29-101 (123)
274 KOG4079 Putative mitochondrial 40.1 41 0.00089 28.0 3.7 60 169-236 70-131 (169)
275 cd02967 mauD Methylamine utili 39.9 32 0.0007 26.2 3.0 9 107-115 64-72 (114)
276 PF06764 DUF1223: Protein of u 38.8 2.8E+02 0.006 24.5 9.2 77 125-207 4-98 (202)
277 COG0278 Glutaredoxin-related p 38.4 1.2E+02 0.0027 23.9 5.9 69 108-183 6-80 (105)
278 PF08806 Sep15_SelM: Sep15/Sel 38.3 41 0.00089 25.1 3.2 36 172-207 41-76 (78)
279 cd03056 GST_N_4 GST_N family, 37.9 97 0.0021 21.2 5.1 51 125-178 3-57 (73)
280 PF00255 GSHPx: Glutathione pe 36.5 1.5E+02 0.0032 23.5 6.3 63 118-181 20-92 (108)
281 cd03033 ArsC_15kD Arsenate Red 36.5 54 0.0012 26.0 3.9 32 123-159 2-33 (113)
282 KOG2868 Decapping enzyme compl 36.1 68 0.0015 30.5 4.9 41 167-207 89-130 (335)
283 cd03052 GST_N_GDAP1 GST_N fami 35.1 1.1E+02 0.0024 21.7 5.1 51 124-177 2-56 (73)
284 KOG0911 Glutaredoxin-related p 31.1 2.4E+02 0.0052 25.5 7.4 60 118-183 137-203 (227)
285 TIGR00014 arsC arsenate reduct 29.7 72 0.0016 25.1 3.6 32 124-160 2-33 (114)
286 PF13778 DUF4174: Domain of un 29.6 2.9E+02 0.0062 21.9 9.0 85 119-206 10-111 (118)
287 cd03021 DsbA_GSTK DsbA family, 29.1 60 0.0013 28.1 3.3 39 162-203 169-208 (209)
288 cd03034 ArsC_ArsC Arsenate Red 28.7 78 0.0017 24.8 3.6 32 124-160 2-33 (112)
289 KOG4277 Uncharacterized conser 26.5 3.2E+02 0.007 26.0 7.6 88 117-207 248-351 (468)
290 COG5429 Uncharacterized secret 25.1 2.5E+02 0.0055 25.6 6.4 82 120-207 42-141 (261)
291 KOG0852 Alkyl hydroperoxide re 24.3 3.2E+02 0.007 23.9 6.7 88 118-205 32-159 (196)
292 PF09695 YtfJ_HI0045: Bacteria 23.9 4.6E+02 0.01 22.4 8.3 43 161-204 112-155 (160)
293 COG1307 DegV Uncharacterized p 23.3 2.3E+02 0.005 26.2 6.2 70 158-231 11-80 (282)
294 PRK09481 sspA stringent starva 23.0 4.8E+02 0.01 22.2 8.4 78 119-209 7-85 (211)
295 TIGR00762 DegV EDD domain prot 22.2 1.8E+02 0.0039 26.5 5.2 69 159-231 10-78 (275)
296 PF05988 DUF899: Bacterial pro 21.2 4E+02 0.0087 23.8 6.9 49 109-158 59-114 (211)
297 COG2077 Tpx Peroxiredoxin [Pos 21.0 2.7E+02 0.0058 23.7 5.4 65 118-182 44-111 (158)
298 PF11287 DUF3088: Protein of u 20.1 3E+02 0.0065 22.1 5.3 77 131-207 24-107 (112)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.7e-22 Score=164.64 Aligned_cols=105 Identities=19% Similarity=0.377 Sum_probs=93.5
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
...+.+..+|++.+.+ .+.||+|+|||+||+||+.+.|.++++..+|.+ ++|++||.|++.+++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 3446677899999986 689999999999999999999999999999865 99999999999999999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
+||+ .+ +...|..+.+.+.++|++.++
T Consensus 123 knGe-~~-d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGE-KV-DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCE-Ee-eeecccCCHHHHHHHHHHHhc
Confidence 9997 34 444488999999999999863
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.7e-21 Score=152.33 Aligned_cols=89 Identities=44% Similarity=0.749 Sum_probs=78.9
Q ss_pred HhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCcc
Q 022923 115 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA 194 (290)
Q Consensus 115 ~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~ 194 (290)
...++++++|+|||+|||+|+.+.|.+++|+.+|+++.|++||+|++.++++.|+|+++|||+||++|+ ++..+. +.
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~v--Ga 93 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVV--GA 93 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEe--cC
Confidence 345679999999999999999999999999999999999999999999999999999999999999998 455554 55
Q ss_pred CHHHHHHHHHhh
Q 022923 195 TIKKFKDALAKH 206 (290)
Q Consensus 195 ~~~~l~~~L~k~ 206 (290)
+.+++++.|+++
T Consensus 94 ~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NKAELEKKIAKH 105 (106)
T ss_pred CHHHHHHHHHhc
Confidence 666888887765
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=1.1e-20 Score=148.97 Aligned_cols=98 Identities=24% Similarity=0.393 Sum_probs=85.5
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH---hHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~---~l~~~~~I~~~PT~~~~~~G 182 (290)
+.++|++.+....+++|||+|||+||++|+.+.|.+++++++++++.|+.||+|++. +++++|+|.++||++||++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 578999999876799999999999999999999999999999988999999999874 89999999999999999998
Q ss_pred CceeeeecCCccCHHHHHHHHHhh
Q 022923 183 HGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+ .+..+. +...+++.+.+.++
T Consensus 82 ~-~v~~~~--G~~~~~l~~~~~~~ 102 (103)
T cd02985 82 E-KIHEEE--GIGPDELIGDVLYY 102 (103)
T ss_pred e-EEEEEe--CCCHHHHHHHHHhc
Confidence 7 444443 57778888877654
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=1.6e-20 Score=145.33 Aligned_cols=99 Identities=26% Similarity=0.527 Sum_probs=89.7
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
.+.++|.+.+.. .+++++|+||++||++|+.+.|.|.++++.++ ++.|+.||++++..++++|+|.++||+++|++|+
T Consensus 4 lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 4 LTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK 82 (103)
T ss_dssp ESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE
T ss_pred CCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc
Confidence 455789999954 58999999999999999999999999999998 7999999999999999999999999999999998
Q ss_pred ceeeeecCCccCHHHHHHHHHhh
Q 022923 184 GRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 184 ~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
....+. |..+.++|.++|++|
T Consensus 83 -~~~~~~-g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 83 -EVKRYN-GPRNAESLIEFIEKH 103 (103)
T ss_dssp -EEEEEE-SSSSHHHHHHHHHHH
T ss_pred -EEEEEE-CCCCHHHHHHHHHcC
Confidence 444554 789999999999986
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.84 E-value=8.9e-21 Score=152.30 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=72.3
Q ss_pred HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
.++|++.+....++++||+|||+||++|+.|.|.+++++++|++ +.|++||+|++++++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 46888888765789999999999999999999999999999987 689999999999999999999999999999997
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=3.2e-20 Score=145.02 Aligned_cols=98 Identities=16% Similarity=0.354 Sum_probs=85.1
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEE
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~ 178 (290)
++++++ .++|++.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|++|||++++.+|++|+|.++||+++
T Consensus 2 ~~~~l~-~~~f~~~v--~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLD-RGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcC-HhhHHHHh--cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 456664 56899888 4569999999999999999999999999999865 8999999999999999999999999999
Q ss_pred EeCCCceeeeecCCccCHHHHHHH
Q 022923 179 YRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 179 ~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
|++|+ .+..+. |.++.+.|.+|
T Consensus 79 ~~~g~-~~~~~~-G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGM-NPEKYY-GDRSKESLVKF 100 (101)
T ss_pred EcCCC-CcccCC-CCCCHHHHHhh
Confidence 99987 344444 78899888776
No 7
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=3.5e-20 Score=145.28 Aligned_cols=101 Identities=23% Similarity=0.460 Sum_probs=85.6
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~ 178 (290)
++.++ +.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++++. .+.|++||+++++++|++|+|.++||+++
T Consensus 2 ~v~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 44555 45789988764 56799999999999999999999999999985 48999999999999999999999999999
Q ss_pred EeCCCceeeeecCCccC-HHHHHHHH
Q 022923 179 YRGAHGRVCSFSCTNAT-IKKFKDAL 203 (290)
Q Consensus 179 ~~~G~~~v~~~~~g~~~-~~~l~~~L 203 (290)
|++|+..+..+. |..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~-G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYN-GWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEcc-CCCCCHHHHHhhC
Confidence 999843555555 6665 88888774
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=3.7e-20 Score=148.89 Aligned_cols=101 Identities=13% Similarity=0.171 Sum_probs=86.2
Q ss_pred CCeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHH-HhcCccccCc
Q 022923 99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF 175 (290)
Q Consensus 99 ~~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~-~~~~I~~~PT 175 (290)
+++.++++ ++|++.+. ..++++++|+|||+||++|+.+.|.++++++++.+ +.|++|||+++.++| ++|+|.++||
T Consensus 9 ~~v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 45666655 57887632 35789999999999999999999999999999875 899999999999999 5899999999
Q ss_pred eEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 176 FRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
+++|++|+ ....+. |.++.+.|..|
T Consensus 88 l~lf~~g~-~~~~y~-G~~~~~~i~~~ 112 (113)
T cd03006 88 IHLYYRSR-GPIEYK-GPMRAPYMEKF 112 (113)
T ss_pred EEEEECCc-cceEEe-CCCCHHHHHhh
Confidence 99999987 455555 88999998876
No 9
>PHA02278 thioredoxin-like protein
Probab=99.83 E-value=3.9e-20 Score=146.41 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEecccc----HhHHHhcCccccCceEEE
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~ 179 (290)
.+.++|.+.+ .++++++|+|||+||++|+.+.|.++++++++ .++.|++||+|++ ++++++|+|.++|||++|
T Consensus 2 ~~~~~~~~~i--~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAI--RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHH--hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4568899988 47899999999999999999999999999885 4478999999976 689999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHH
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
++|+ .+ ....|..+.+++.++
T Consensus 80 k~G~-~v-~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQ-LV-KKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCE-EE-EEEeCCCCHHHHHhh
Confidence 9997 34 444477888877664
No 10
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=3.1e-20 Score=145.92 Aligned_cols=93 Identities=13% Similarity=0.241 Sum_probs=83.0
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-ccHhHHHhcCccccCceEEEeCCCcee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRV 186 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~~~l~~~~~I~~~PT~~~~~~G~~~v 186 (290)
+++.+.+...++++++|+|||+||++|+.+.|.|++++++++++.++.||.+ +++.++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 3566666667899999999999999999999999999999999999999999 89999999999999999999888 35
Q ss_pred eeecCCccCHHHHHHHH
Q 022923 187 CSFSCTNATIKKFKDAL 203 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L 203 (290)
..+. |.++.++|.+||
T Consensus 85 ~~~~-G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYN-GTRTLDSLAAFY 100 (100)
T ss_pred eEec-CCCCHHHHHhhC
Confidence 5555 889999998875
No 11
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.83 E-value=1e-19 Score=151.45 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=92.0
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceE-E
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F 178 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~-~ 178 (290)
+.++.+.++|++.+...++++|+|+|||+||++|+.+.|.++++++++++ +.|++||+|+++++++.|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678899999999876899999999999999999999999999999988 788999999999999999999887766 9
Q ss_pred EeCCCceeeeecCC--------ccCHHHHHHHHHhhC
Q 022923 179 YRGAHGRVCSFSCT--------NATIKKFKDALAKHT 207 (290)
Q Consensus 179 ~~~G~~~v~~~~~g--------~~~~~~l~~~L~k~~ 207 (290)
|++|+. ...+..| ..+.++|++.++.+.
T Consensus 85 fk~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 85 FRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EECCeE-EEEEecccccccccccCCHHHHHHHHHHHH
Confidence 999873 4444445 478889999888775
No 12
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.82 E-value=1.5e-19 Score=142.06 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=84.8
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
++|.+.++|.+.+ +.+++++|+|||+||++|+.+.|.+.+++++++ .+.|+.+|+| +.+++++|+|+++||+++|
T Consensus 2 ~~i~~~~~~~~~i--~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 2 VEINNQEEWEELL--SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred eEccCHHHHHHHH--ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 3578889999988 468999999999999999999999999999986 3789999999 7889999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHHh
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
++|+ ......| .+.+.+.++|++
T Consensus 79 ~~g~--~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGE--LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCE--EEEEEec-CChHHHHHHHhh
Confidence 9986 3344424 588999998875
No 13
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.82 E-value=1e-19 Score=140.39 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+|++.+..+.++++||+||++||++|+.+.|.++++++.+++ +.|++||++++..++++|+|.++||+++|++|+ ..
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~--~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ--PV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE--Ee
Confidence 577777666688999999999999999999999999999864 889999999999999999999999999999886 33
Q ss_pred eecCCccCHHHHHHHHH
Q 022923 188 SFSCTNATIKKFKDALA 204 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~ 204 (290)
....|..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 33447889999998874
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.81 E-value=2.2e-19 Score=142.01 Aligned_cols=100 Identities=15% Similarity=0.345 Sum_probs=84.0
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----C---CcEEEEEeccccHhHHHhcCccc
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHV 172 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~---~v~~~~Vd~d~~~~l~~~~~I~~ 172 (290)
++++++ .++|++.+ ..+++++|+|||+||++|+.+.|.|+++++.+ + ++.|++||++++.+++++|+|++
T Consensus 2 ~v~~l~-~~~f~~~i--~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLT-SGNIDDIL--QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcC-HhhHHHHH--hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 345554 57899877 46789999999999999999999999998764 2 48999999999999999999999
Q ss_pred cCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+||+++|++|+.....+. |.++.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYR-GQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence 999999999972233444 889999998875
No 15
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=2.1e-19 Score=143.49 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred CHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
+.++|.+.+. ...+++++|+|||+||++|+.+.|.+++++++++ ++.|++||+++++.++++|+|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 5567776554 3468999999999999999999999999999985 589999999999999999999999999999988
Q ss_pred CceeeeecCCccCHHHHHHHHHhh
Q 022923 183 HGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+ ......|..+.++|.++|+++
T Consensus 90 ~--~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 90 Q--VTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred E--EEEEecCCCCHHHHHHHHhcC
Confidence 6 455555788999999999863
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.81 E-value=5.6e-19 Score=141.84 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=79.5
Q ss_pred CCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923 98 QPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 98 ~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
.+.+.+|++.++|.+.+ .++++|+|+||++||++|+.+.|.+++++++|++++|++||++++++++++|+|.++||++
T Consensus 3 ~g~v~~i~~~~~~~~~i--~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 3 HGKYREVSDEKEFFEIV--KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCeEEeCCHHHHHHHH--hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 45788999999999999 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 022923 178 FYRGAH 183 (290)
Q Consensus 178 ~~~~G~ 183 (290)
+|++|+
T Consensus 81 ~fk~G~ 86 (113)
T cd02989 81 LFKNGK 86 (113)
T ss_pred EEECCE
Confidence 999997
No 17
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.81 E-value=5.2e-19 Score=141.50 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=84.2
Q ss_pred HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (290)
Q Consensus 107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~ 185 (290)
.++|++.+...++++|+|+|+|+||++|+.+.|.+++++++|++ +.|++||+|+.+++++.|+|...||++||++|+-.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888876899999999999999999999999999999998 99999999999999999999999999999999822
Q ss_pred eeeecCCc--------cCHHHHHHHHHhh
Q 022923 186 VCSFSCTN--------ATIKKFKDALAKH 206 (290)
Q Consensus 186 v~~~~~g~--------~~~~~l~~~L~k~ 206 (290)
.+.+..|+ .+.++|++.++-.
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 23332222 3457777776643
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=163.15 Aligned_cols=107 Identities=21% Similarity=0.437 Sum_probs=94.7
Q ss_pred CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceE
Q 022923 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
.+.+|++ .+|.+.+. .+..+||+|+||+|||++|+.+.|.+++++..|.+ +.+++||||+++.++.+|+|+++||++
T Consensus 24 ~I~dvT~-anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDVTE-ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceechH-hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 4677777 46777666 55566999999999999999999999999999965 999999999999999999999999999
Q ss_pred EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
.|++|+ -+.+|. |....+.+++||+++++.
T Consensus 103 af~dGq-pVdgF~-G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQ-PVDGFQ-GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCc-CccccC-CCCcHHHHHHHHHHhcCh
Confidence 999998 566776 888999999999999854
No 19
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=9.7e-19 Score=136.33 Aligned_cols=98 Identities=14% Similarity=0.323 Sum_probs=83.7
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceE
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
++++++ .++|++.+ .++ +||+|||+||++|+.+.|.|+++++.+. ++.|++||+++++.++++|+|.++||++
T Consensus 2 ~v~~l~-~~~f~~~~---~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELT-DSNWTLVL---EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcC-hhhHHHHh---CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 355664 56898876 233 7899999999999999999999998864 5899999999999999999999999999
Q ss_pred EEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923 178 FYRGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
+|++|+ +..+. |..+.++|.++|++
T Consensus 77 ~~~~g~--~~~~~-G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGV--FRRYQ-GPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCC--EEEec-CCCCHHHHHHHHhC
Confidence 999886 44444 88999999999864
No 20
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-19 Score=158.35 Aligned_cols=106 Identities=31% Similarity=0.514 Sum_probs=99.0
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
.|+.|.+.++|...+...+.|.|+|+|+|+||++|+++.|.+..++.+|++..|++||+|+...++..+||.++|||++|
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 46789999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
+||. ++..+ .+.+...|++.+.+|+.
T Consensus 82 ~ng~-kid~~--qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 82 RNGV-KIDQI--QGADASGLEEKVAKYAS 107 (288)
T ss_pred ecCe-Eeeee--cCCCHHHHHHHHHHHhc
Confidence 9998 66655 48999999999999974
No 21
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=9.5e-19 Score=140.02 Aligned_cols=83 Identities=30% Similarity=0.591 Sum_probs=76.2
Q ss_pred CCeeEeCCHhHHHHHHHhcC-CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923 99 PNMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 99 ~~v~~I~s~~~f~~~l~~~~-~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
+.+.+|++ ++|.+.+...+ +++++|+||++||++|+.+.|.+++++++|+++.|++||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 46778888 89999986432 5899999999999999999999999999999999999999998 999999999999999
Q ss_pred EEeCCC
Q 022923 178 FYRGAH 183 (290)
Q Consensus 178 ~~~~G~ 183 (290)
+|++|+
T Consensus 82 ~f~~G~ 87 (113)
T cd02957 82 VYKNGE 87 (113)
T ss_pred EEECCE
Confidence 999997
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=7.8e-19 Score=142.58 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=89.6
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChH--HH--HHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccc
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHV 172 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~--Ck--~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~ 172 (290)
.+..++ .++|++.+.. ++.++|++||++||++ |+ .+.|.+.+++.++ .++.|++||+|++++++++|+|++
T Consensus 10 ~v~~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 455555 4799998875 5789999999999987 99 8899999999987 459999999999999999999999
Q ss_pred cCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 173 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 173 ~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+||+++|++|+ +..+. |.++.+.|.++|++..
T Consensus 88 iPTl~lfk~G~--~v~~~-G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDE--VIEYD-GEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCE--EEEee-CCCCHHHHHHHHHHHh
Confidence 99999999997 44554 8899999999999764
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.78 E-value=3.7e-18 Score=134.95 Aligned_cols=104 Identities=14% Similarity=0.358 Sum_probs=89.7
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEE
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~ 178 (290)
.|++++. ++|.+.+. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+++
T Consensus 4 ~v~~~~~-~~~~~~v~-~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL-KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeCh-hhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 4667755 68887765 358899999999999999999999999999995 48999999999999999999999999999
Q ss_pred EeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 179 YRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 179 ~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
|++|+ +.....|..+.+++.++|++++
T Consensus 82 ~~~G~--~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGE--VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCe--EEEEecCCCCHHHHHHHHHHhc
Confidence 99886 4434447788999999998875
No 24
>PTZ00051 thioredoxin; Provisional
Probab=99.77 E-value=5.9e-18 Score=130.91 Aligned_cols=95 Identities=23% Similarity=0.455 Sum_probs=82.6
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~ 180 (290)
+.++++.++|.+.+ ..+++++|+||++||++|+.+.|.+++++++++++.|+.||++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~--~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHH--hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 56789999999988 4688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCccCHHHHH
Q 022923 181 GAHGRVCSFSCTNATIKKFK 200 (290)
Q Consensus 181 ~G~~~v~~~~~g~~~~~~l~ 200 (290)
+|+ .+..+. | ...++|.
T Consensus 80 ~g~-~~~~~~-G-~~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLL-G-ANDEALK 96 (98)
T ss_pred CCe-EEEEEe-C-CCHHHhh
Confidence 987 343333 3 4555554
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=4.3e-18 Score=134.04 Aligned_cols=99 Identities=23% Similarity=0.474 Sum_probs=84.2
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccc--cHhHHHhcCccccCceEE
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~ 178 (290)
.+++ .++|.+.+.. .+++++|+||++||++|+.+.|.++++++.+++ +.|+.||+++ +.+++++|+|.++||+++
T Consensus 3 ~~l~-~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 3 YELT-PKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEcc-hhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 3444 4688888864 588899999999999999999999999999864 8999999998 889999999999999999
Q ss_pred EeCCCc----eeeeecCCccCHHHHHHHH
Q 022923 179 YRGAHG----RVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 179 ~~~G~~----~v~~~~~g~~~~~~l~~~L 203 (290)
|++|+. ....|. |.++.++|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~-G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYN-GERSAKAIVDFV 108 (109)
T ss_pred EeCCCccccccccccc-CccCHHHHHHHh
Confidence 998861 233444 889999999987
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=6.9e-18 Score=131.22 Aligned_cols=100 Identities=21% Similarity=0.385 Sum_probs=85.5
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+.++ +.++|.+.+.. .+++++|+||++||++|+.+.|.|.++++++. .+.|+.+|++++.+++++|+|+++||+++|
T Consensus 2 v~~l-~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVEL-TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEc-CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 3444 44688888764 46779999999999999999999999999875 589999999999999999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHH
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
++|+.....+. |+.+.++|.+|+
T Consensus 80 ~~~~~~~~~~~-g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQ-GGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecC-CCCCHHHHHHHh
Confidence 98854455555 789999999886
No 27
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.77 E-value=5.3e-18 Score=130.76 Aligned_cols=95 Identities=25% Similarity=0.451 Sum_probs=81.1
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH-CCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~-~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~ 184 (290)
+.++|++.+....+++++|+||++||++|+.+.|.+++++++ ++++.|+++|++++++++++|+|+++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT- 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence 357888888765579999999999999999999999999999 668999999999999999999999999999999886
Q ss_pred eeeeecCCccCHHHHHHHH
Q 022923 185 RVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 185 ~v~~~~~g~~~~~~l~~~L 203 (290)
..... .+.+.++|.+.|
T Consensus 80 -~~~~~-~g~~~~~l~~~~ 96 (97)
T cd02984 80 -IVDRV-SGADPKELAKKV 96 (97)
T ss_pred -EEEEE-eCCCHHHHHHhh
Confidence 33333 346677777665
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=3.9e-18 Score=132.41 Aligned_cols=93 Identities=23% Similarity=0.489 Sum_probs=80.1
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
+.++|++.+. +++++|+||++||++|+.+.|.+.++++++. ++.|+.||++++..++++|+|.++||+++|++
T Consensus 6 ~~~~f~~~~~---~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 6 TEDNFDHHIA---EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CHHHHHHHhh---cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 4468998883 2359999999999999999999999999874 48999999999999999999999999999998
Q ss_pred CCceeeeecCCccCHHHHHHHH
Q 022923 182 AHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L 203 (290)
|+ .+..+. |..+.++|.+||
T Consensus 83 g~-~~~~~~-G~~~~~~l~~~i 102 (102)
T cd03005 83 GE-KVDKYK-GTRDLDSLKEFV 102 (102)
T ss_pred CC-eeeEee-CCCCHHHHHhhC
Confidence 87 444444 888998888774
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=6.9e-18 Score=140.21 Aligned_cols=102 Identities=22% Similarity=0.437 Sum_probs=88.0
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+.++ +.++|.+.+ ..+++++|+||++||++|+.+.|.+.++++++. ++.|++||++++++++++|+|.++||+++|
T Consensus 37 ~i~~-~~~~~~~~i--~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 37 VINA-TGETLDKLL--QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CEEc-CHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 4443 557888877 458999999999999999999999999998875 599999999999999999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
++|+ +.....|..+.++|.++|++++
T Consensus 114 ~~G~--~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 114 KNGQ--VVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ECCE--EEEEEcCCCCHHHHHHHHHHhC
Confidence 9886 4444448899999999998763
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=9.8e-18 Score=144.69 Aligned_cols=108 Identities=21% Similarity=0.409 Sum_probs=89.6
Q ss_pred CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~ 176 (290)
.+.+.+|++.++|.+.+... .+.+|||+||++||++|+.+.|.|.+|+++|++++|++||++++ .++.+|+|.++|||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 56889999988999998643 24699999999999999999999999999999999999999987 89999999999999
Q ss_pred EEEeCCC--ceeeeec---CCccCHHHHHHHHHhh
Q 022923 177 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKH 206 (290)
Q Consensus 177 ~~~~~G~--~~v~~~~---~g~~~~~~l~~~L~k~ 206 (290)
++|++|+ .++.++. ....+.+.|..+|.++
T Consensus 140 llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 140 LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999998 1222222 1235677777777654
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=1e-17 Score=129.56 Aligned_cols=98 Identities=20% Similarity=0.449 Sum_probs=86.7
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
+.++|.+.+. ++++++|+||++||++|+.+.+.++++++.+. ++.++.+|++++..++++|+|.++|++++|++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 3467888873 68999999999999999999999999999886 499999999999999999999999999999988
Q ss_pred CceeeeecCCccCHHHHHHHHHhhC
Q 022923 183 HGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+. +..+. |..+.++|+.+|++++
T Consensus 80 ~~-~~~~~-g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK-PVDYE-GGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc-ceeec-CCCCHHHHHHHHHhcC
Confidence 73 55555 7889999999999863
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.75 E-value=1.3e-17 Score=140.83 Aligned_cols=84 Identities=17% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccc----
Q 022923 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV---- 172 (290)
Q Consensus 99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~---- 172 (290)
..+.+++ .++|++.+....+++++|+||++||++|+.+.|.++++++++. +++|++||++++++++++|+|..
T Consensus 28 ~~v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 3566665 4789988866567899999999999999999999999999985 49999999999999999999998
Q ss_pred --cCceEEEeCCC
Q 022923 173 --LPFFRFYRGAH 183 (290)
Q Consensus 173 --~PT~~~~~~G~ 183 (290)
+||+++|++|+
T Consensus 107 ~~~PT~ilf~~Gk 119 (152)
T cd02962 107 KQLPTIILFQGGK 119 (152)
T ss_pred CCCCEEEEEECCE
Confidence 99999999997
No 33
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=8.9e-18 Score=133.44 Aligned_cols=102 Identities=13% Similarity=0.268 Sum_probs=84.1
Q ss_pred eeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-cHhHHH-hcCccccCc
Q 022923 101 MREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-HKSMCY-SLNVHVLPF 175 (290)
Q Consensus 101 v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-~~~l~~-~~~I~~~PT 175 (290)
+++++. ++|+..+. ...+++++|+||++||++|+.+.|.|.++++.+. ++.++.||++. +..++. .|+|+++||
T Consensus 3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 445544 58888875 3467999999999999999999999999999885 48999999997 578887 499999999
Q ss_pred eEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 176 FRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+++|++|......|.++.++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999887655666663348999998875
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=2e-17 Score=147.88 Aligned_cols=107 Identities=10% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCeeEeCCHhHHHHHHHhc---CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccC
Q 022923 99 PNMREVASAQDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP 174 (290)
Q Consensus 99 ~~v~~I~s~~~f~~~l~~~---~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~P 174 (290)
..++++ +.++|++.+... .+++++|+|||+||++|+.+.|.|+++++++++ +.|+.||++++++++++|+|+++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 346666 457899987532 368999999999999999999999999999975 899999999999999999999999
Q ss_pred ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
|+++|++|+ +..+..|..+.++|.+|+.+...
T Consensus 109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999886 66666678999999999988863
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.74 E-value=2.2e-17 Score=128.48 Aligned_cols=98 Identities=21% Similarity=0.419 Sum_probs=82.6
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc--cHhHHHhcCccccCc
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE--HKSMCYSLNVHVLPF 175 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~--~~~l~~~~~I~~~PT 175 (290)
+.++++ ++|.+.+. .+++++|+||++||++|+.+.|.+.++++.+. .+.++.+|+++ +..++++|+|+++||
T Consensus 2 ~~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt 78 (104)
T cd02997 2 VVHLTD-EDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78 (104)
T ss_pred eEEech-HhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence 445544 58888874 46799999999999999999999999998874 38899999998 999999999999999
Q ss_pred eEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 176 FRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+++|++|+ .+..+. |..+.+++.+||
T Consensus 79 ~~~~~~g~-~~~~~~-g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYE-GERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeC-CCCCHHHHHhhC
Confidence 99999987 444444 888999988774
No 36
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.74 E-value=4e-17 Score=125.58 Aligned_cols=98 Identities=23% Similarity=0.464 Sum_probs=85.1
Q ss_pred HhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCce
Q 022923 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (290)
Q Consensus 107 ~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~ 185 (290)
.++|.+.+.. .+++++|+||++||++|+.+.+.+.++++.++ ++.|+.||++++..++++|+|.++||+++|++|+
T Consensus 3 ~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~-- 79 (101)
T TIGR01068 3 DANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK-- 79 (101)
T ss_pred HHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc--
Confidence 4678887753 46799999999999999999999999998886 5999999999999999999999999999998887
Q ss_pred eeeecCCccCHHHHHHHHHhhC
Q 022923 186 VCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 186 v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
......|..+.+++.++|++++
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 3334447788999999998753
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.73 E-value=2e-17 Score=130.05 Aligned_cols=93 Identities=17% Similarity=0.348 Sum_probs=79.6
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++|++. .++++++|+||++||++|+.+.|.|+++++.+. ++.++.+|+++++.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~ 83 (104)
T cd03000 7 DSFKDV---RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL 83 (104)
T ss_pred hhhhhh---ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence 556653 257899999999999999999999999999873 3899999999999999999999999999997664
Q ss_pred ceeeeecCCccCHHHHHHHHHhh
Q 022923 184 GRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 184 ~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
...+. |..+.++|.+++++.
T Consensus 84 --~~~~~-G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 --AYNYR-GPRTKDDIVEFANRV 103 (104)
T ss_pred --ceeec-CCCCHHHHHHHHHhh
Confidence 44444 789999999999864
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=3.2e-17 Score=127.30 Aligned_cols=98 Identities=23% Similarity=0.421 Sum_probs=82.0
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---cEEEEEeccccHhHHHhcCccccCceEE
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~I~~~PT~~~ 178 (290)
.+++ .++|.+.+.. .+++++|+||++||++|+.+.|.+.++++.+.+ +.|+++|++++ +++..+++.++||+++
T Consensus 3 ~~l~-~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 3 KVVV-GKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEc-hhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 3444 4688888764 468999999999999999999999999998754 99999999987 6889999999999999
Q ss_pred EeCCC-ceeeeecCCccCHHHHHHHH
Q 022923 179 YRGAH-GRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 179 ~~~G~-~~v~~~~~g~~~~~~l~~~L 203 (290)
|++|+ .....+. |..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~-g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYE-GDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEcc-CCcCHHHHHhhC
Confidence 99886 3344444 889999998875
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.73 E-value=2.1e-17 Score=129.74 Aligned_cols=95 Identities=23% Similarity=0.267 Sum_probs=77.7
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEEeccc----cHhHHHhcCccccCceEEE
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d~----~~~l~~~~~I~~~PT~~~~ 179 (290)
++|.+.+ .++++++|+||++||++|+.+.+.+ .++++.+. ++.++.||+++ ..+++++|+|.++||++||
T Consensus 2 ~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQAL--AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHH--HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 4567776 4689999999999999999999988 57887776 79999999987 6789999999999999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHH
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALA 204 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~ 204 (290)
+.|+++......|..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHhC
Confidence 8422234444448899999988863
No 40
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.72 E-value=3.1e-17 Score=131.08 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCC--ChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~W--C~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
+..+|++.+ +.+..++|+||++| |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|+++||+++|++|
T Consensus 16 ~~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 16 DAATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred ccccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 346788777 56889999999997 99999999999999999987 78999999999999999999999999999999
Q ss_pred CceeeeecCCccCHHHHH
Q 022923 183 HGRVCSFSCTNATIKKFK 200 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~ 200 (290)
+ .+.. ..|..+.+++.
T Consensus 94 k-~v~~-~~G~~~~~e~~ 109 (111)
T cd02965 94 R-YVGV-LAGIRDWDEYV 109 (111)
T ss_pred E-EEEE-EeCccCHHHHh
Confidence 7 3444 34777777764
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=4e-17 Score=126.80 Aligned_cols=100 Identities=22% Similarity=0.431 Sum_probs=83.2
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccc-cHhHHHhcCccccCce
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFF 176 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~-~~~l~~~~~I~~~PT~ 176 (290)
+.++++ ++|.+.+. +.+++++|+||++||++|+.+.|.+.++++.+. ++.++.+|+++ ++.++++|+|.++|++
T Consensus 2 ~~~l~~-~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTD-SNFDKVVG-DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcch-hcHHHHhc-CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 345544 67888664 356799999999999999999999999999875 49999999999 9999999999999999
Q ss_pred EEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 177 RFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
++|++|+.....+ .|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~-~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKY-EGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCcccc-CCccCHHHHHhhC
Confidence 9998885334444 4779999998874
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.71 E-value=9.2e-17 Score=134.01 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=81.8
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecccc--HhHHHhcCccccCceEEEe-CCC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR-GAH 183 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~--~~l~~~~~I~~~PT~~~~~-~G~ 183 (290)
.+|.+.+ ..++++||+|||+||++|+.+.|.+.++++.|. ++.|+.||++.. ..++++|+|.++||++||+ +|+
T Consensus 11 ~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 4566665 468999999999999999999999999999985 478888888754 5889999999999999995 565
Q ss_pred ceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 184 GRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 184 ~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
+.....|..+.++|.++|++++..
T Consensus 89 --~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 89 --EEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred --EEEEEeCCCCHHHHHHHHHHHHcC
Confidence 555555888899999999988743
No 43
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=1.3e-16 Score=121.79 Aligned_cols=95 Identities=22% Similarity=0.443 Sum_probs=80.9
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
+.++|.+.+. ++++++|+||++||++|+.+.+.+.++++.+ .++.|+.+|++++..++++|+|.++||+++|+++
T Consensus 4 ~~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 3468888884 4559999999999999999999999999988 5699999999999999999999999999999888
Q ss_pred CceeeeecCCccCHHHHHHHH
Q 022923 183 HGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~~~L 203 (290)
+.....+. |..+.+++.+|+
T Consensus 82 ~~~~~~~~-g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYE-GPRTLESLVEFI 101 (101)
T ss_pred CcccccCC-CCcCHHHHHhhC
Confidence 42444554 677888888764
No 44
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.1e-17 Score=157.72 Aligned_cols=105 Identities=21% Similarity=0.429 Sum_probs=92.1
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccccHhHHHhcCccccCc
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPF 175 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~I~~~PT 175 (290)
.+.+++ .++|.+.+ ..+..++|.||||||+||+++.|.+++.++.+ +.+.+++|||+++.++|.+|+|++|||
T Consensus 26 ~Vl~Lt-~dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 26 DVLVLT-KDNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ceEEEe-cccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 445554 47899999 67899999999999999999999999998876 359999999999999999999999999
Q ss_pred eEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 176 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 176 ~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
+.+|+||.. ...|. |+++.+.+..||.+..+.
T Consensus 103 lkiFrnG~~-~~~Y~-G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 103 LKIFRNGRS-AQDYN-GPREADGIVKWLKKQSGP 134 (493)
T ss_pred EEEEecCCc-ceecc-CcccHHHHHHHHHhccCC
Confidence 999999982 35555 899999999999999744
No 45
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.69 E-value=3e-16 Score=121.87 Aligned_cols=92 Identities=18% Similarity=0.433 Sum_probs=79.0
Q ss_pred HHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 188 (290)
Q Consensus 110 f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~ 188 (290)
+...+.. .+++++|+||++||+.|+.+.|.+++++++++ ++.++.+|++++++++++|+|.++||+++|++|+ .+ .
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v-~ 81 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LV-K 81 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EE-E
Confidence 3444443 78999999999999999999999999999986 5999999999999999999999999999999876 34 4
Q ss_pred ecCCccCHHHHHHHHH
Q 022923 189 FSCTNATIKKFKDALA 204 (290)
Q Consensus 189 ~~~g~~~~~~l~~~L~ 204 (290)
...|..+.++|.++|+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 4447888999988863
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.68 E-value=2.5e-16 Score=126.42 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=80.2
Q ss_pred HHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCce-eee
Q 022923 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR-VCS 188 (290)
Q Consensus 110 f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~-v~~ 188 (290)
|.+.+ .++..++|+||++||++|+.+.|.++++++.++.+.|..||++++++++++|+|.++||+++|++|+.. ...
T Consensus 15 ~~~~l--~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEM--KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHh--CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 55555 457789999999999999999999999999988899999999999999999999999999999987511 113
Q ss_pred ecCCccCHHHHHHHHHhhC
Q 022923 189 FSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 189 ~~~g~~~~~~l~~~L~k~~ 207 (290)
+. |..+..+|.++|+..+
T Consensus 93 ~~-G~~~~~el~~~i~~i~ 110 (113)
T cd02975 93 YY-GLPAGYEFASLIEDIV 110 (113)
T ss_pred EE-ecCchHHHHHHHHHHH
Confidence 33 6777888888888764
No 47
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.68 E-value=4.1e-16 Score=152.23 Aligned_cols=106 Identities=14% Similarity=0.261 Sum_probs=89.2
Q ss_pred CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccccH-hHH-HhcCccccC
Q 022923 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YSLNVHVLP 174 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~-~l~-~~~~I~~~P 174 (290)
.+++++. ++|++.+. ...+++|||+|||+||++|+.+.|.|++++++|.+ +.|+.||+|.+. .++ ++|+|.++|
T Consensus 352 ~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 5556555 58999885 45789999999999999999999999999999853 899999999754 454 789999999
Q ss_pred ceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
||+||++|+.....|..|.++.+.|..||+..
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999755666765679999999999853
No 48
>PLN02309 5'-adenylylsulfate reductase
Probab=99.68 E-value=3.8e-16 Score=152.38 Aligned_cols=106 Identities=14% Similarity=0.260 Sum_probs=91.0
Q ss_pred CeeEeCCHhHHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc-ccHhHHH-hcCccccC
Q 022923 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE-EHKSMCY-SLNVHVLP 174 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d-~~~~l~~-~~~I~~~P 174 (290)
.+++++. ++|++.+. ...++++||+|||+||++|+.|.|.|++++++|. ++.|++||++ .+..+++ +|+|+++|
T Consensus 346 ~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 346 NVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 5555544 68888875 4578999999999999999999999999999985 4999999999 8888886 69999999
Q ss_pred ceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 175 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 175 T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
||+||++|......|..+.++.+.|..||++.
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999988756667765679999999999874
No 49
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.67 E-value=1.1e-16 Score=145.68 Aligned_cols=125 Identities=17% Similarity=0.328 Sum_probs=100.0
Q ss_pred HHHHHHH-hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 109 DLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 109 ~f~~~l~-~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++++... +..+..++|+||||||+|||++.|.|+++.-++.+ +++.++|++..+.++.+|+|++|||+.||++|.
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 4444443 34678999999999999999999999999877754 899999999999999999999999999999986
Q ss_pred ceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCCCCccccCC
Q 022923 184 GRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTP 239 (290)
Q Consensus 184 ~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~~~~~~~~~ 239 (290)
...|. |+++.+.+++|-.+..+. +-........+.+.+.+...+.|.+..
T Consensus 112 --a~dYR-G~R~Kd~iieFAhR~a~a---iI~pi~enQ~~fehlq~Rhq~ffVf~G 161 (468)
T KOG4277|consen 112 --AIDYR-GGREKDAIIEFAHRCAAA---IIEPINENQIEFEHLQARHQPFFVFFG 161 (468)
T ss_pred --eeecC-CCccHHHHHHHHHhcccc---eeeecChhHHHHHHHhhccCceEEEEe
Confidence 77777 999999999999887643 111122234555677777777777655
No 50
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=4.7e-16 Score=125.33 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeC--CCCh---HHHHHHHHHHHHHHHCCCcEEEEEec-----cccHhHHHhcCcc--c
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNY-----EEHKSMCYSLNVH--V 172 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA--~WC~---~Ck~~~p~l~~la~~~~~v~~~~Vd~-----d~~~~l~~~~~I~--~ 172 (290)
.+.++|++.+ .+++.+||.||| |||+ +|+.+.|.+.+.+. ++.+++||| .++.+||++|+|+ +
T Consensus 6 L~~~nF~~~v--~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 6 LDTVTFYKVI--PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred CChhhHHHHH--hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 3557899988 567899999999 9999 89888888876654 389999999 4678999999999 9
Q ss_pred cCceEEEeCCC-ceeeeecCCc-cCHHHHHHHHHhh
Q 022923 173 LPFFRFYRGAH-GRVCSFSCTN-ATIKKFKDALAKH 206 (290)
Q Consensus 173 ~PT~~~~~~G~-~~v~~~~~g~-~~~~~l~~~L~k~ 206 (290)
+||+.+|++|. .....|. |+ ++.+.|.+||.++
T Consensus 81 yPTl~lF~~g~~~~~~~Y~-G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 81 YPVIYLFHGGDFENPVPYS-GADVTVDALQRFLKGN 115 (116)
T ss_pred CCEEEEEeCCCcCCCccCC-CCcccHHHHHHHHHhc
Confidence 99999999984 2345676 64 9999999999876
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=1e-15 Score=133.98 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=83.5
Q ss_pred CCCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCc
Q 022923 97 LQPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 175 (290)
Q Consensus 97 ~~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT 175 (290)
..+.+.+|+. ++|...+..+ .+.+|||+||++||++|+.+.|.|.+|+++|++++|++||++.. +.+|+|.++||
T Consensus 80 ~~G~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence 4567888855 6787766543 34699999999999999999999999999999999999999864 68999999999
Q ss_pred eEEEeCCC--ceeeeec-CC--ccCHHHHHHHHHhh
Q 022923 176 FRFYRGAH--GRVCSFS-CT--NATIKKFKDALAKH 206 (290)
Q Consensus 176 ~~~~~~G~--~~v~~~~-~g--~~~~~~l~~~L~k~ 206 (290)
|++|++|+ .++.++. .| ..+.+.|..+|.++
T Consensus 156 lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 156 ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99999998 2222221 12 35677777777653
No 52
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.65 E-value=1e-15 Score=124.10 Aligned_cols=97 Identities=13% Similarity=0.278 Sum_probs=80.3
Q ss_pred EeCCHhHHHHHHHhcCCCeEEEEEeC-------CCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc-------cHhHHHh
Q 022923 103 EVASAQDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 167 (290)
Q Consensus 103 ~I~s~~~f~~~l~~~~~k~vlV~FyA-------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~~ 167 (290)
.+.+.++|.+.+...++++|+|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +.++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 36778899999976568999999999 999999999999999999998 69999999976 4689999
Q ss_pred cCcc-ccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 168 LNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 168 ~~I~-~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
|+|. ++||+++|++|+ ++.+..+ .+.+.+..|
T Consensus 85 ~~I~~~iPT~~~~~~~~-~l~~~~c--~~~~~~~~~ 117 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ-RLVEDEC--LQADLVEMF 117 (119)
T ss_pred cCcccCCCEEEEEcCCc-eecchhh--cCHHHHHHh
Confidence 9999 999999998775 5554432 344444444
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=1.4e-15 Score=122.14 Aligned_cols=100 Identities=19% Similarity=0.365 Sum_probs=76.7
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecc--ccHhHHHhcCccccC
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYE--EHKSMCYSLNVHVLP 174 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d--~~~~l~~~~~I~~~P 174 (290)
++++ +.++|.+.+.. .+++++|+||++||++|+.+.|.|+++++++. .+.|+.+||+ ++.+++++|+|+++|
T Consensus 3 v~~l-~~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 3 VIVL-DAASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred eEEC-CHHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 3444 45688888865 45899999999999999999999999999764 3899999985 477899999999999
Q ss_pred ceEEEeCCCcee---eeecCCccCHHHHHHH
Q 022923 175 FFRFYRGAHGRV---CSFSCTNATIKKFKDA 202 (290)
Q Consensus 175 T~~~~~~G~~~v---~~~~~g~~~~~~l~~~ 202 (290)
|+++|++|+... ..+.++.+..+.+++.
T Consensus 81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 81 TLRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred EEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 999999887211 1233233555555443
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=2.3e-15 Score=145.93 Aligned_cols=121 Identities=20% Similarity=0.414 Sum_probs=98.3
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
+.++|.+.+ ..+++++|+|||+||++|+.+.|.+.++++.+. ++.|+.|||+++.++|++|+|.++||+++|++
T Consensus 7 ~~~~~~~~i--~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 7 TKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CHHHHHHHH--hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 457898888 457899999999999999999999999887653 49999999999999999999999999999999
Q ss_pred CCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCC-cHHHHHHHHhCCCCc
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKDLS 234 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~-~~~e~~~l~~~~~~~ 234 (290)
|+..+..+. |.++.+.|.+|+.++++. +...+ +.++++.+....+..
T Consensus 85 g~~~~~~~~-g~~~~~~l~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~~~ 132 (462)
T TIGR01130 85 GEDSVSDYN-GPRDADGIVKYMKKQSGP-----AVKEIETVADLEAFLADDDVV 132 (462)
T ss_pred CccceeEec-CCCCHHHHHHHHHHhcCC-----CceeecCHHHHHHHHhcCCcE
Confidence 872245555 889999999999998743 33334 356666666665443
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.64 E-value=1.8e-15 Score=113.03 Aligned_cols=91 Identities=31% Similarity=0.585 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 188 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~ 188 (290)
+|.+.+. .+++++|+||++||++|+.+.+.+.++.+.++++.|+.+|++.+..++++|+|.++||+++|++|+ .+..
T Consensus 2 ~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 4666663 348999999999999999999999999999888999999999999999999999999999999886 3444
Q ss_pred ecCCccCHHHHHHHH
Q 022923 189 FSCTNATIKKFKDAL 203 (290)
Q Consensus 189 ~~~g~~~~~~l~~~L 203 (290)
+ .|..+.++|.++|
T Consensus 79 ~-~g~~~~~~l~~~i 92 (93)
T cd02947 79 V-VGADPKEELEEFL 92 (93)
T ss_pred E-ecCCCHHHHHHHh
Confidence 4 3777888888876
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.64 E-value=2.3e-15 Score=122.60 Aligned_cols=95 Identities=13% Similarity=0.227 Sum_probs=75.5
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----------hHHHhcC----
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN---- 169 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------~l~~~~~---- 169 (290)
.+.++|.+.+ .+++.++|+||++||++|+.+.|.|.+++++ .++.|+.||++.+. ++.++|+
T Consensus 11 it~~~~~~~i--~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 11 TTVVRALEAL--DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred cCHHHHHHHH--HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 3456888888 4578899999999999999999999999998 56788999988542 5556665
Q ss_pred ccccCceEEEeCCCceeeeecCC-ccCHHHHHHHHH
Q 022923 170 VHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDALA 204 (290)
Q Consensus 170 I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~~~L~ 204 (290)
|.++||+++|++|+ .+. ...| ..+.++|.+++.
T Consensus 88 i~~~PT~v~~k~Gk-~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 88 FMGTPTFVHITDGK-QVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCCEEEEEeCCe-EEE-EEeCCCCCHHHHHHHhh
Confidence 55699999999998 344 4435 567999998864
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.63 E-value=2.4e-15 Score=121.83 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=78.7
Q ss_pred hHHHHHHHhcCC-CeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEecccc-------------HhHHHhcC
Q 022923 108 QDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEEH-------------KSMCYSLN 169 (290)
Q Consensus 108 ~~f~~~l~~~~~-k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~-------------~~l~~~~~ 169 (290)
+++.+.. ..+ ++++|+||++||++|+.+.+.+. .+.+.+ .++.++.||++.+ ..++.+|+
T Consensus 4 ~~~~~a~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAA--ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHH--HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 4566666 457 99999999999999999999885 555555 3588999999864 68999999
Q ss_pred ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 170 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 170 I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
|.++||++||+++.+++.....|..+.++|.++|+..+.
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999987512344445588889999999988764
No 58
>PTZ00062 glutaredoxin; Provisional
Probab=99.62 E-value=6e-15 Score=130.08 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCc
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~ 184 (290)
.+.++|.+.+.. ..+.++++|||+||++|+.+.|.+.+|+++|+++.|++||.+ |+|.++|||+||++|+
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~- 73 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ- 73 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence 466888888842 247799999999999999999999999999999999999977 9999999999999998
Q ss_pred eeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCCCCccccC
Q 022923 185 RVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYT 238 (290)
Q Consensus 185 ~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~~~~~~~~ 238 (290)
.+..+ .+.++.++..++.++..... .....+.++.+..++.+..-..
T Consensus 74 ~i~r~--~G~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~li~~~~Vvvf~K 120 (204)
T PTZ00062 74 LINSL--EGCNTSTLVSFIRGWAQKGS-----SEDTVEKIERLIRNHKILLFMK 120 (204)
T ss_pred EEeee--eCCCHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCEEEEEc
Confidence 44444 37789999999999975411 1223455667777777664444
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=8.6e-15 Score=143.28 Aligned_cols=103 Identities=21% Similarity=0.418 Sum_probs=88.8
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC----CCcEEEEEeccccHhHHHhcCccccCce
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~I~~~PT~ 176 (290)
+..+ +.++|.+.+ .+++.++|+|||+||++|+++.|.+.++++.+ .++.|+.|||+++.++|++|+|.++||+
T Consensus 34 v~~l-~~~~f~~~i--~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 34 VTVL-TDSTFDKFI--TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred cEEc-chhhHHHHH--hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 4444 457888888 45789999999999999999999999988665 3599999999999999999999999999
Q ss_pred EEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
++|++|+ .+ .+. |.++.+.|.+|++++++.
T Consensus 111 ~~~~~g~-~~-~y~-g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 111 KFFNKGN-PV-NYS-GGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEEECCc-eE-Eec-CCCCHHHHHHHHHHhhCC
Confidence 9999987 33 554 889999999999999754
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.60 E-value=5.9e-15 Score=144.43 Aligned_cols=106 Identities=21% Similarity=0.420 Sum_probs=90.2
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
+..+. .++|++.+.. .+++|+|+|||+||++|+.+.|.++++++.+. .+.++.+|++.+..++++|+|+++||++
T Consensus 359 v~~l~-~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 359 VKVVV-GNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred eEEec-ccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 44444 4788888654 68999999999999999999999999998875 3899999999999999999999999999
Q ss_pred EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
+|++|+.....+. |.++.++|.++|+++...
T Consensus 437 ~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 437 FVKAGERTPIPYE-GERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEECCCcceeEec-CcCCHHHHHHHHHHcCCC
Confidence 9998873333454 889999999999999853
No 61
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.1e-15 Score=147.03 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=85.1
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
-.++|++++.. .+|.|||.||||||+||+++.|.|++|+++|. ++.++++|.+.|. .....|+++|||++|+.|
T Consensus 372 Vgknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag 448 (493)
T KOG0190|consen 372 VGKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAG 448 (493)
T ss_pred eecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCC
Confidence 34678888764 78999999999999999999999999999985 4999999999887 456678889999999988
Q ss_pred Cce-eeeecCCccCHHHHHHHHHhhCC
Q 022923 183 HGR-VCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 183 ~~~-v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
... ++.|. |.++.++|..||.++..
T Consensus 449 ~k~~pv~y~-g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 449 HKSNPVIYN-GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCCCCcccC-CCcchHHHHhhhccCCC
Confidence 743 55554 89999999999999874
No 62
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.54 E-value=4.6e-14 Score=142.03 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=89.4
Q ss_pred CeeEeCCHhHHHHHHHh--cCCCeEEEEEeCCCChHHHHHHHHH---HHHHHHCCCcEEEEEeccc----cHhHHHhcCc
Q 022923 100 NMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSLNV 170 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~--~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~~v~~~~Vd~d~----~~~l~~~~~I 170 (290)
...++.+.+++++.+.. .++|+|+|+|||+||++|+.+.+.+ .++.++++++.++++|+++ +.+++++|+|
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 56778899999998863 3579999999999999999999875 6788888899999999985 4688999999
Q ss_pred cccCceEEEe-CCCcee-eeecCCccCHHHHHHHHHhhC
Q 022923 171 HVLPFFRFYR-GAHGRV-CSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 171 ~~~PT~~~~~-~G~~~v-~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.++||+++|+ +|+ .+ .....|..+.++|.++|++..
T Consensus 533 ~g~Pt~~~~~~~G~-~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQ-EIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCC-CcccccccCCCCHHHHHHHHHHhc
Confidence 9999999997 565 32 233447889999999998864
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.53 E-value=4.8e-14 Score=109.72 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=76.6
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCcc--ccCceEEEeCCCceeeeecCCccC
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNAT 195 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~--~~PT~~~~~~G~~~v~~~~~g~~~ 195 (290)
++++++.||++||++|+.+.|.+++++++|. .+.|+.||+++++.+++.|+|. ++|++++++++++....+..+..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 6899999999999999999999999999995 4999999999999999999999 999999999843224444434458
Q ss_pred HHHHHHHHHhh
Q 022923 196 IKKFKDALAKH 206 (290)
Q Consensus 196 ~~~l~~~L~k~ 206 (290)
.++|.+||+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 64
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.49 E-value=5.3e-14 Score=128.37 Aligned_cols=99 Identities=16% Similarity=0.345 Sum_probs=85.7
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH----CC--CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~----~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
++++.++ ..+.+|+|.|||+||...+.+.|.+++.++. |+ .+.+++|||+.+..|+.+|.|..|||+.+|++
T Consensus 4 ~N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 4 ENIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 5677777 4589999999999999999999999988875 44 39999999999999999999999999999999
Q ss_pred CCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
|...-..|. |.++.+.|.+||++++.+
T Consensus 82 G~~~~rEYR-g~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 82 GEMMKREYR-GQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cchhhhhhc-cchhHHHHHHHHHHHhcc
Confidence 982222444 889999999999999854
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.48 E-value=5.9e-14 Score=113.40 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=66.3
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccH-hHHHhcCccc--cCceEEEe-CCCceeee--e
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYR-GAHGRVCS--F 189 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~-~l~~~~~I~~--~PT~~~~~-~G~~~v~~--~ 189 (290)
.++++|||+|||+||++|+.+.|.+.+....+ .+..|+.||++.+. .+...|++.+ +||++||. +|+ .+.. .
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk-~~~~~~~ 95 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD-VHPEIIN 95 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC-Cchhhcc
Confidence 46899999999999999999999999876643 23566677776554 4567899987 99999996 666 2221 2
Q ss_pred cCCccCHHHHHHHHHhhC
Q 022923 190 SCTNATIKKFKDALAKHT 207 (290)
Q Consensus 190 ~~g~~~~~~l~~~L~k~~ 207 (290)
..|..+.+.|.+.|....
T Consensus 96 ~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred CCCCccccccCCCHHHHH
Confidence 236777777776666553
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.46 E-value=1.3e-12 Score=116.02 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCCeEEEEEeC---CCChHHHHHHHHHHHHHHHCCCcE--EEEEeccccHhHHHhcCccccCceEEEeCCCceee-eecC
Q 022923 118 GDKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC-SFSC 191 (290)
Q Consensus 118 ~~k~vlV~FyA---~WC~~Ck~~~p~l~~la~~~~~v~--~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~-~~~~ 191 (290)
.+...++.|++ +||++|+.+.|.+++++++|+++. ++.+|.+++++++++|+|.++||+++|++|+ .+. .+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~- 95 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT- 95 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe-
Confidence 34455666888 999999999999999999997754 6666666999999999999999999999987 332 444
Q ss_pred CccCHHHHHHHHHhhCC
Q 022923 192 TNATIKKFKDALAKHTP 208 (290)
Q Consensus 192 g~~~~~~l~~~L~k~~~ 208 (290)
|..+.+++.++|+.++.
T Consensus 96 G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVR 112 (215)
T ss_pred ecCCHHHHHHHHHHHHH
Confidence 77888899999988853
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.46 E-value=5.6e-13 Score=99.42 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=68.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHH
Q 022923 122 VVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK 200 (290)
Q Consensus 122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~ 200 (290)
.+..||++||++|+.+.|.++++++.++ ++.+..||++++++++++|+|.++||+++ +|+ . .+ .|..+.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~-~~-~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--V-EF-IGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--E-EE-ecCCCHHHHH
Confidence 4678999999999999999999999885 48999999999999999999999999986 664 2 23 3778899999
Q ss_pred HHHHhh
Q 022923 201 DALAKH 206 (290)
Q Consensus 201 ~~L~k~ 206 (290)
++|++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998865
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.45 E-value=1.2e-12 Score=120.46 Aligned_cols=92 Identities=12% Similarity=0.204 Sum_probs=76.8
Q ss_pred hcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------cHhHHHhcCccccCceEEEeCCCc
Q 022923 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGAHG 184 (290)
Q Consensus 116 ~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~I~~~PT~~~~~~G~~ 184 (290)
.-.++++||+||++||++|+.+.|.+.+++++|+ +.++.|++|. +..++++|+|.++||+++++++++
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 3468999999999999999999999999999985 6777777764 357899999999999999987333
Q ss_pred eeeeecCCccCHHHHHHHHHhhCC
Q 022923 185 RVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 185 ~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
++.....|..+.++|.+.|.....
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 565555688999999999987764
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.44 E-value=4.1e-13 Score=130.15 Aligned_cols=100 Identities=25% Similarity=0.438 Sum_probs=83.7
Q ss_pred CHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 106 s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
+.++|.+.+.. .++++||+||++||++|+.+.|.++++++.+. ++.|+.+|++.+. +.. ++|.++||+++|++
T Consensus 352 ~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~ 428 (462)
T TIGR01130 352 VGKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPA 428 (462)
T ss_pred eCcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeC
Confidence 34678887754 58999999999999999999999999999885 4899999999875 344 99999999999998
Q ss_pred CCc-eeeeecCCccCHHHHHHHHHhhCCC
Q 022923 182 AHG-RVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 182 G~~-~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
|+. ....+. |..+.+.|.++|+++...
T Consensus 429 ~~~~~~~~~~-g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 429 GKKSEPVPYD-GDRTLEDFSKFIAKHATF 456 (462)
T ss_pred CCCcCceEec-CcCCHHHHHHHHHhcCCC
Confidence 873 234454 789999999999998743
No 70
>PHA02125 thioredoxin-like protein
Probab=99.44 E-value=7.1e-13 Score=98.53 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=57.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
+++||++||++|+.+.|.++++. +.+++||.+++.+++++|+|.++||++ +|+ .+..+.+...+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998763 578999999999999999999999987 454 344444234566777665
Q ss_pred H
Q 022923 203 L 203 (290)
Q Consensus 203 L 203 (290)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 71
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.43 E-value=1.4e-12 Score=110.29 Aligned_cols=88 Identities=9% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc------------HhHH-Hhc---CccccCceEEEeC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRG 181 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~------------~~l~-~~~---~I~~~PT~~~~~~ 181 (290)
.++..+|+|||+||++|+++.|.+++++++| ++.++.|++|+. .... ..| +|.++||+++++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4667899999999999999999999999998 466777776642 2333 345 8999999999965
Q ss_pred CCceeeeecCCccCHHHHHHHHHhh
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
.++.+.....|..+.+++.+.|++.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 4334454556889999999988765
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.40 E-value=2e-12 Score=114.81 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=74.3
Q ss_pred HHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 190 (290)
Q Consensus 111 ~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~ 190 (290)
.+.+....+..+++.||++||++|+.+.+.+++++.+++++.+..+|.+++++++++|+|.++||++++++|. + +.
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~ 200 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV 200 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence 3333332344455559999999999999999999999889999999999999999999999999999997764 2 33
Q ss_pred CCccCHHHHHHHHHh
Q 022923 191 CTNATIKKFKDALAK 205 (290)
Q Consensus 191 ~g~~~~~~l~~~L~k 205 (290)
|....++|.++|.+
T Consensus 201 -G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 201 -GAYPEEQFLEYILS 214 (215)
T ss_pred -CCCCHHHHHHHHHh
Confidence 77888999998864
No 73
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.35 E-value=8e-13 Score=130.38 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=86.5
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHCCCcEEEEEecccc----HhHHHhcCccccC
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLP 174 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~P 174 (290)
+.+++..++++.+.++.+|+|+|||||+||..||.+++..- +...+.+|++++++|++++ .++.++|++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 66777779999998777789999999999999999999865 6666788999999999864 4678999999999
Q ss_pred ceEEEe-CCCceeeeecCCccCHHHHHHHHHhh
Q 022923 175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
++++|. +|+ +... ..|..+.+.|.+++++.
T Consensus 537 ~~~ff~~~g~-e~~~-l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGS-EPEI-LTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCC-cCcC-CcceecHHHHHHHHHHh
Confidence 999998 454 3333 44889999999999875
No 74
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.6e-12 Score=123.38 Aligned_cols=98 Identities=24% Similarity=0.480 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+|...+. ..+++++|+||++||++|+.+.|.|.+++..+.+ +.+..|||+++.++|++|+|.++||+.+|..| ..+.
T Consensus 38 ~~~~~~~-~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~ 115 (383)
T KOG0191|consen 38 SFFDFLL-KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPI 115 (383)
T ss_pred ccHHHhh-ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Ccee
Confidence 3344443 4688999999999999999999999999998876 89999999999999999999999999999998 3577
Q ss_pred eecCCccCHHHHHHHHHhhCCC
Q 022923 188 SFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
.+. +..+.+.+.+++.+.+..
T Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 116 DYS-GPRNAESLAEFLIKELEP 136 (383)
T ss_pred ecc-CcccHHHHHHHHHHhhcc
Confidence 776 689999999999887743
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.33 E-value=1.2e-11 Score=107.42 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----------------------hHHHhcCccccC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP 174 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------------------~l~~~~~I~~~P 174 (290)
.+++++|+||++||++|+.+.|.+.++.++ ++.++.|+.+++. .+.+.|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999999764 6888888865422 245578999999
Q ss_pred ceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 175 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 175 T~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+.++++ +|+ +.....|..+.+++.+.|+.++
T Consensus 145 ~t~vid~~G~--i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 145 ETFLIDGNGI--IRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred eEEEECCCce--EEEEEecCCCHHHHHHHHHHHH
Confidence 877774 554 6655668889988888888765
No 76
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.32 E-value=1.2e-11 Score=100.95 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=58.3
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHH-H--HHHHH-CCCcEEEEEeccccHhHHHh--------cCccccCc
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI-C--QLAEM-NPDVQFLQVNYEEHKSMCYS--------LNVHVLPF 175 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l-~--~la~~-~~~v~~~~Vd~d~~~~l~~~--------~~I~~~PT 175 (290)
+.+.... .++|+|+|+||++||++|+.|.+.. . ++.+. +.++.+++||.++++++.++ |++.++||
T Consensus 6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4454444 5799999999999999999998743 2 56665 35799999999988877653 58999999
Q ss_pred eEEEeCCC
Q 022923 176 FRFYRGAH 183 (290)
Q Consensus 176 ~~~~~~G~ 183 (290)
++|+...+
T Consensus 84 ~vfl~~~G 91 (124)
T cd02955 84 NVFLTPDL 91 (124)
T ss_pred EEEECCCC
Confidence 99996543
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.31 E-value=3.9e-12 Score=100.48 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=61.6
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHHHH---HHHC-CCcEEEEEecccc--------------------HhHHHhcCccc
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKICQL---AEMN-PDVQFLQVNYEEH--------------------KSMCYSLNVHV 172 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~l---a~~~-~~v~~~~Vd~d~~--------------------~~l~~~~~I~~ 172 (290)
.++++++|+||++||++|+.+.+.+.+. ...+ .++.++.++++.. .++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999864 3333 2588888887643 35889999999
Q ss_pred cCceEEEe-CCCceeeeecCCccCHHHHHHHH
Q 022923 173 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 173 ~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+||+++++ +|+ +.....|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~--~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGK--IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSC--EEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCC--EEEEecCCCCHHHHHhhC
Confidence 99999996 454 443344889999998875
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.31 E-value=1.3e-11 Score=122.33 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=72.3
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEe----------------------------ccccHhHHH
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCY 166 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd----------------------------~d~~~~l~~ 166 (290)
+++|+|||+|||+||++|+.+.|.+++++++++ ++.|+.|+ +|.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 368999999999999999999999999999885 56665553 345667899
Q ss_pred hcCccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 167 SLNVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 167 ~~~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
.|+|.++||++++ ++|+ +.....|..+.++|+++|+..
T Consensus 134 ~fgV~giPTt~IIDkdGk--IV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGD--VQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCe--EEEEEeCCCCHHHHHHHHHHh
Confidence 9999999999776 4554 666666889999999999843
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.30 E-value=1.2e-11 Score=92.22 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=56.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCC-ccCHHHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFK 200 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~ 200 (290)
.|+||++||++|+.+.|.+++++++++. +.|++|| +.+.+.+|+|.++||+++ ||+ .. +. | ..+.+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~-G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IM-GKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EE-eccCCHHHHH
Confidence 3889999999999999999999999864 7888877 234478899999999999 775 22 33 3 34557777
Q ss_pred HHH
Q 022923 201 DAL 203 (290)
Q Consensus 201 ~~L 203 (290)
++|
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 80
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.28 E-value=1e-11 Score=89.62 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=54.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.||++||++|+.+.+.++++++.++++.|..+|++++++++++|+|.++||+++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 67899999999999999999999988889999999999999999999999999865 554
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.28 E-value=2.8e-11 Score=103.78 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=68.1
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------------------ccHhHHHhcCccccC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP 174 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~I~~~P 174 (290)
++++++|+||++||++|+.+.|.++++.++ ++.++.|+.+ .+..+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 589999999999999999999999999765 4666666642 334567789999999
Q ss_pred ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 175 FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 175 T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+.+++ ++|+ +.....|..+.+++.+.|++++
T Consensus 140 ~~~~id~~G~--i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 140 ETFLVDGNGV--ILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eEEEEcCCce--EEEEEeccCCHHHHHHHHHHHh
Confidence 76666 4554 5555557889999999998875
No 82
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.27 E-value=2.2e-11 Score=93.44 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CcEEEEEecccc-------------------------HhHHHhcCc
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV 170 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~-------------------------~~l~~~~~I 170 (290)
+|+++|+||++||++|+...|.+.++.++|+ ++.|+.|++|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 689999887742 347888999
Q ss_pred cccCceEEEeCCC
Q 022923 171 HVLPFFRFYRGAH 183 (290)
Q Consensus 171 ~~~PT~~~~~~G~ 183 (290)
.++|++++++.++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 9999999997543
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.27 E-value=3.3e-11 Score=97.51 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec-----------------------cccHhHHHhcCccccC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP 174 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~I~~~P 174 (290)
.+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+. |.+..+++.|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5789999999999999999999999999887 477776663 4456788899999999
Q ss_pred ceEEE-eCCCceeeeecCCccCHHHH
Q 022923 175 FFRFY-RGAHGRVCSFSCTNATIKKF 199 (290)
Q Consensus 175 T~~~~-~~G~~~v~~~~~g~~~~~~l 199 (290)
+.+++ ++|+ +.....|..+.+.|
T Consensus 103 ~~~~ld~~G~--v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGI--IRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCce--EEEEEeccCChHhc
Confidence 76666 4554 55444466665543
No 84
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.25 E-value=2.7e-11 Score=101.61 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---------CcEEEEEecccc-------------------------Hh
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------KS 163 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~---------~v~~~~Vd~d~~-------------------------~~ 163 (290)
++|+|+|+|||+||++|+.+.|.|.++.+++. ++.++.|+.|++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 68999999999999999999999999876432 488888887632 24
Q ss_pred HHHhcCccccCceEEEeCCCceeeee
Q 022923 164 MCYSLNVHVLPFFRFYRGAHGRVCSF 189 (290)
Q Consensus 164 l~~~~~I~~~PT~~~~~~G~~~v~~~ 189 (290)
++++|+|.++||+++++.. |++...
T Consensus 104 l~~~y~v~~iPt~vlId~~-G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPD-GDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCC-CcEEee
Confidence 7788999999999999633 346543
No 85
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.25 E-value=6.7e-11 Score=100.34 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEeccc----------------------cHhHHHhcCcccc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL 173 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~----------------------~~~l~~~~~I~~~ 173 (290)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|+++. +..+++.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999998864 8888888753 4577899999999
Q ss_pred CceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 174 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 174 PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
|++++++.++ ++.....|..+.+++.+++++.
T Consensus 140 P~~~lid~~g-~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDG-KVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCC-cEEEEEeCCCCHHHHHHHHHHh
Confidence 9998886443 4655555889999999998865
No 86
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.24 E-value=2.7e-11 Score=98.59 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=54.8
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecccc------------------------HhHHHhcC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN 169 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~------------------------~~l~~~~~ 169 (290)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|++|.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 57899999999999999999999998887753 577777776633 35788999
Q ss_pred ccccCceEEEe-CCC
Q 022923 170 VHVLPFFRFYR-GAH 183 (290)
Q Consensus 170 I~~~PT~~~~~-~G~ 183 (290)
|.++|++++++ +|+
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 99999999996 444
No 87
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.22 E-value=1.3e-10 Score=89.52 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=65.1
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK 197 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~ 197 (290)
.+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++++|+|.++||+++ ||+ ... . |..+.+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~--~~~-~-G~~~~~ 84 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE--LFG-F-GRMTLE 84 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE--EEE-e-CCCCHH
Confidence 4566788899999999999999999999999999999999999999999999999999975 775 322 2 555655
Q ss_pred HHH
Q 022923 198 KFK 200 (290)
Q Consensus 198 ~l~ 200 (290)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 543
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.21 E-value=5.9e-11 Score=97.10 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEecccc-------------------------HhHHHhc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL 168 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~-------------------------~~l~~~~ 168 (290)
.+|+++|+||++||++|+.+.|.+.++.+++. ++.++.|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 58999999999999999999999999987764 477777777643 2466779
Q ss_pred CccccCceEEEeCC
Q 022923 169 NVHVLPFFRFYRGA 182 (290)
Q Consensus 169 ~I~~~PT~~~~~~G 182 (290)
+|.++||+++++.+
T Consensus 96 ~v~~iPt~~lid~~ 109 (132)
T cd02964 96 KVEGIPTLVVLKPD 109 (132)
T ss_pred CCCCCCEEEEECCC
Confidence 99999999999633
No 89
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.6e-11 Score=112.59 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=89.6
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHHhcCccccCceE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
+.+.+. ++|...+.. .+..++|.||+|||++|+.+.|.|++++..+ ..+.+..+|++.+..++.+++|+++||+.
T Consensus 146 v~~l~~-~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 146 VFELTK-DNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEccc-cchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 444444 566666554 5788999999999999999999999999877 35999999999999999999999999999
Q ss_pred EEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 178 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
+|.+|.. ...+..+.++.+.+..|+.+....
T Consensus 224 ~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 224 LFPPGEE-DIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EecCCCc-ccccccccccHHHHHHHHHhhcCC
Confidence 9999884 345555889999999999988765
No 90
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.6e-11 Score=120.33 Aligned_cols=78 Identities=21% Similarity=0.471 Sum_probs=67.5
Q ss_pred eCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----cEEEEEecc--ccHhHHHhcCccccCceE
Q 022923 104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYE--EHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 104 I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d--~~~~l~~~~~I~~~PT~~ 177 (290)
..+.++|...+..+ .+-.+|.||++|||+|+.+.|+++++++.... +.++.|||- +|..+|+.|+|.++||+.
T Consensus 43 ~Ld~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr 121 (606)
T KOG1731|consen 43 ELDVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR 121 (606)
T ss_pred EeehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence 34557899988653 46789999999999999999999999988643 899999995 688999999999999999
Q ss_pred EEeCC
Q 022923 178 FYRGA 182 (290)
Q Consensus 178 ~~~~G 182 (290)
+|..+
T Consensus 122 yf~~~ 126 (606)
T KOG1731|consen 122 YFPPD 126 (606)
T ss_pred ecCCc
Confidence 99765
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.15 E-value=1.7e-10 Score=92.44 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe---------------------ccccHhHHHhcCccccCce
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd---------------------~d~~~~l~~~~~I~~~PT~ 176 (290)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+.+++++|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988743 2222222 1345679999999999999
Q ss_pred EEEeCCCceeeeecCCccCHHHHHHH
Q 022923 177 RFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 177 ~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
+++++++ +.....|..+.++|.+.
T Consensus 98 ~vid~~g--i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGG--IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCCC--eEEEEeccCCHHHHHhh
Confidence 9998776 44444477888887653
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=1.8e-10 Score=123.44 Aligned_cols=88 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEec---------------------------cccHhHHHhc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL 168 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~---------------------------d~~~~l~~~~ 168 (290)
++|+|||+|||+||++|+...|.|+++.++|++ +.++.|.. |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999965 67777732 2244677899
Q ss_pred CccccCceEEEe-CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 169 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 169 ~I~~~PT~~~~~-~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+|.++|++++|+ +|+ +.....|....+++.++|++.+
T Consensus 499 ~V~~iPt~ilid~~G~--iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGK--LIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCe--EEEEEecccCHHHHHHHHHHHH
Confidence 999999999994 665 5555558888899999988775
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.13 E-value=3.4e-10 Score=87.53 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=58.9
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEecccc-----------------------HhHHHhcCccc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV 172 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~-----------------------~~l~~~~~I~~ 172 (290)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 5799999999885 77899999999
Q ss_pred cCceEEEeCC
Q 022923 173 LPFFRFYRGA 182 (290)
Q Consensus 173 ~PT~~~~~~G 182 (290)
+|++++++.+
T Consensus 98 ~P~~~l~d~~ 107 (116)
T cd02966 98 LPTTFLIDRD 107 (116)
T ss_pred cceEEEECCC
Confidence 9999999533
No 94
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.11 E-value=6.5e-10 Score=96.28 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-------------HhHHHhcCc--cccCceEEEeCCCceee
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-------------~~l~~~~~I--~~~PT~~~~~~G~~~v~ 187 (290)
+|+||++||++|++..|.+.+++++| ++.++.|++|+. ..+.+.|++ .++||.++++.....+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 477877776632 236678995 69999999854331323
Q ss_pred eecCCccCHHHHHHHHHhhCC
Q 022923 188 SFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~~ 208 (290)
....|..+.+++.+.|++.+.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 445689999999999988863
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.07 E-value=1.2e-09 Score=87.22 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=71.3
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 190 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~ 190 (290)
.++|+++|+|+++||.+|+.+... |. ++.+.+ .++.++.+|++ +...++..|++.++|+++++....+.+....
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 468999999999999999999764 32 444444 35888888887 4667899999999999999975122355555
Q ss_pred CCccCHHHHHHHHHhhC
Q 022923 191 CTNATIKKFKDALAKHT 207 (290)
Q Consensus 191 ~g~~~~~~l~~~L~k~~ 207 (290)
.|..+.++|...|++..
T Consensus 95 ~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 95 SGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 58999999999988764
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.02 E-value=2.8e-09 Score=87.81 Aligned_cols=98 Identities=13% Similarity=0.007 Sum_probs=78.7
Q ss_pred hHHHHHHHhcCCCeEEEEEeC--CCChHHHHHHHHHHHHHHHCC-C-cEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 108 QDLVESLWHAGDKLVVVDFFS--PGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA--~WC~~Ck~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
.++++.+. .....+|.|-. --++-+-...-.+.+++++|+ . ++|++||+|++++++.+|+|.++||++||+||+
T Consensus 25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 45666663 34445555543 345677788889999999997 3 899999999999999999999999999999997
Q ss_pred ceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 184 GRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 184 ~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
......|..+.+++.++|++++..
T Consensus 103 --~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 103 --YRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred --EEEEEeCcCCHHHHHHHHHHHhcC
Confidence 444455889999999999999754
No 97
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.00 E-value=7.9e-10 Score=83.29 Aligned_cols=63 Identities=24% Similarity=0.442 Sum_probs=49.3
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHH---HHHHH-HCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l---~~la~-~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~ 180 (290)
.++|+++|+|+++||++|+.+...+ .++.+ ...++.+++||.++..... .+..+++|+++|++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeC
Confidence 4699999999999999999999877 35544 2367999999998766543 22237799999985
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.00 E-value=2.2e-09 Score=87.00 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--cEEEEEecc---------------------------ccHhHHHhc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL 168 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d---------------------------~~~~l~~~~ 168 (290)
++++++|+||++||++|+...|.++++.++|.+ +.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 579999999999999999999999999999964 778777541 123567889
Q ss_pred CccccCceEEEeCCCceeeeec
Q 022923 169 NVHVLPFFRFYRGAHGRVCSFS 190 (290)
Q Consensus 169 ~I~~~PT~~~~~~G~~~v~~~~ 190 (290)
++.++|++++++... ++....
T Consensus 102 ~v~~~P~~~vid~~G-~v~~~~ 122 (126)
T cd03012 102 GNQYWPALYLIDPTG-NVRHVH 122 (126)
T ss_pred CCCcCCeEEEECCCC-cEEEEE
Confidence 999999999995332 354433
No 99
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.96 E-value=3.7e-09 Score=96.96 Aligned_cols=109 Identities=17% Similarity=0.335 Sum_probs=81.2
Q ss_pred CCCeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 98 ~~~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~ 176 (290)
-+.+.+|.+.++|.+.+... .+..|||+||-+.+..|..|...|..|+.+|+.++|++|..+..+ +..+|.+.++||+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence 35788999988999988532 356799999999999999999999999999999999999988765 7889999999999
Q ss_pred EEEeCCC--ceeeeec---CCccCHHHHHHHHHhhC
Q 022923 177 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKHT 207 (290)
Q Consensus 177 ~~~~~G~--~~v~~~~---~g~~~~~~l~~~L~k~~ 207 (290)
++|++|. +.++++. +...+..+|..+|.++.
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999997 2222221 22367889999999885
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.96 E-value=1.3e-09 Score=86.13 Aligned_cols=63 Identities=24% Similarity=0.407 Sum_probs=46.7
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEe---cccc-----------------HhHHHhcCccccCce
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVN---YEEH-----------------KSMCYSLNVHVLPFF 176 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd---~d~~-----------------~~l~~~~~I~~~PT~ 176 (290)
.+++++|+||++||++|+.+.|.++++.+++. ++.++.+. .++. .++.++|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 37899999999999999999999999988874 46666552 1122 234556677777777
Q ss_pred EEEe
Q 022923 177 RFYR 180 (290)
Q Consensus 177 ~~~~ 180 (290)
++++
T Consensus 100 ~vid 103 (114)
T cd02967 100 VLLD 103 (114)
T ss_pred EEEC
Confidence 6664
No 101
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.95 E-value=5.1e-09 Score=86.53 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------HKSMCYSLNVH-- 171 (290)
Q Consensus 118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------~~~l~~~~~I~-- 171 (290)
.+|+++|+||++ ||++|+...|.+.++.+.| .++.++.|..+. +..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 689999999999 9999999999999998875 347887776543 34678899998
Q ss_pred -------ccCceEEEeCCCceeeeecCCccC--HHHHHH
Q 022923 172 -------VLPFFRFYRGAHGRVCSFSCTNAT--IKKFKD 201 (290)
Q Consensus 172 -------~~PT~~~~~~G~~~v~~~~~g~~~--~~~l~~ 201 (290)
++|+++++...+ ++.....|..+ ..++.+
T Consensus 107 ~~~~~~~~~P~~~lId~~G-~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDG-KVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp CCTTTTSSSSEEEEEETTS-BEEEEEESSBTTSHHSHHH
T ss_pred cccccCCeecEEEEEECCC-EEEEEEeCCCCCCCCChhh
Confidence 999988775443 45554444444 444443
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.95 E-value=8e-09 Score=90.00 Aligned_cols=86 Identities=14% Similarity=0.283 Sum_probs=61.4
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc--------------------ccHhHHHhcCccccCceE
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--------------------~~~~l~~~~~I~~~PT~~ 177 (290)
.+++++|+||++||++|+.+.|.+.++.+++ ++.++.|+.+ ...++.+.|+|.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5789999999999999999999999998775 3444444321 134678899999999988
Q ss_pred EEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 178 FYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 178 ~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+++..+ ++.. .......+.+.+.++..
T Consensus 152 lID~~G-~I~~-~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDG-KIRA-KGLTNTREHLESLLEAD 178 (189)
T ss_pred EECCCC-eEEE-ccCCCCHHHHHHHHHHH
Confidence 775332 3543 32334566777777655
No 103
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.94 E-value=2.5e-09 Score=92.38 Aligned_cols=110 Identities=27% Similarity=0.448 Sum_probs=92.5
Q ss_pred hhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccc
Q 022923 93 WEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172 (290)
Q Consensus 93 ~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~ 172 (290)
|.....+.+.+|.+..+|.+.+. ....||++||-+.-..|+.|...++.|++.+-+.+|++||++..+-++.+++|..
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 55667889999999999999984 4677999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeCCC--ceeeeec-CCc---cCHHHHHHHHH
Q 022923 173 LPFFRFYRGAH--GRVCSFS-CTN---ATIKKFKDALA 204 (290)
Q Consensus 173 ~PT~~~~~~G~--~~v~~~~-~g~---~~~~~l~~~L~ 204 (290)
+|++.+|++|+ .++++|. .|+ .+.+.|+.-|.
T Consensus 138 LP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred eeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 99999999998 3344443 122 34455555544
No 104
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.91 E-value=6.6e-09 Score=79.15 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEecc-ccHhHHHhcC--ccccCceEEEeCCCceeeeecCC--
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHGRVCSFSCT-- 192 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d-~~~~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g-- 192 (290)
+++++++||++||++|+.+.|.+.++++.+. .+.++.+|.. .+..+...|+ +..+|+++++.++.. +.... +
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLV-GGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhh-hcc
Confidence 7899999999999999999999999999998 4999999997 7899999999 999999999988873 33322 3
Q ss_pred ccCHHHHHHHH
Q 022923 193 NATIKKFKDAL 203 (290)
Q Consensus 193 ~~~~~~l~~~L 203 (290)
......+.+..
T Consensus 110 ~~~~~~~~~~~ 120 (127)
T COG0526 110 VLPKEALIDAL 120 (127)
T ss_pred cCCHHHHHHHh
Confidence 34444444443
No 105
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.90 E-value=8e-09 Score=90.92 Aligned_cols=90 Identities=10% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHHHhcCc--------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMCYSLNV-------------- 170 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~~~~~I-------------- 170 (290)
.+++|||+|||+||++|+...|.+.++.++|. ++.++.|++++ ...+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 57999999999999999999999999999985 48999998631 2233444433
Q ss_pred ----------------------cccC---ceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 171 ----------------------HVLP---FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 171 ----------------------~~~P---T~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
..+| +.+++ |.+|++..+..|..+.+++.+.|++++.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflI-D~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLV-NKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 23333 3333466666677888899999988763
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.90 E-value=8.3e-09 Score=89.71 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=62.2
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEE------EEEeccc-----------------------------cH
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK 162 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~------~~Vd~d~-----------------------------~~ 162 (290)
.+|.++|+|||+||++|+...|.++++.++. +.+ +-||.|+ +.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 5999999999999999999999999997642 333 4444432 23
Q ss_pred hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 163 ~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
.+...|++.++|+.+|+-|.+|++.....|..+.+++.+.+
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 45678999999888444355556877777888887776643
No 107
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.89 E-value=1.3e-08 Score=91.91 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------cHhHH-HhcC--------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------HKSMC-YSLN-------------- 169 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------~~~l~-~~~~-------------- 169 (290)
.++++||+||++||++|+...|.|.++.++|. ++.++.|+++. ....+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 57999999999999999999999999999985 48999998741 11222 2221
Q ss_pred --------------------ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 170 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 170 --------------------I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
|...|+.++++.. |++.....|..+.++|++.|++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~-GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKN-GKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCC-CcEEEEECCCCCHHHHHHHHHHHh
Confidence 1234776666332 346666668889999999998875
No 108
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.88 E-value=1.3e-08 Score=83.60 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=46.0
Q ss_pred hcCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEEeCCC
Q 022923 116 HAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 116 ~~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
..++|+|+|+||++||++|+.|...+. ++.+.. .++..+.+|.+....-....+ .++||++|++...
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g 90 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence 357999999999999999999998753 444443 356666777652211111233 7899999995443
No 109
>smart00594 UAS UAS domain.
Probab=98.85 E-value=2.6e-08 Score=80.79 Aligned_cols=87 Identities=10% Similarity=0.179 Sum_probs=66.2
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHCC-CcEEEEEecc--ccHhHHHhcCccccCceEEEeCCCc----ee
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHG----RV 186 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d--~~~~l~~~~~I~~~PT~~~~~~G~~----~v 186 (290)
..+|+++|+|+++||..|+.+...+- ++.+... ++.+..+|++ +...++.+|+++++|+++++....+ .+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 46889999999999999999987532 4444433 5888888876 4567899999999999999954321 24
Q ss_pred eeecCCccCHHHHHHHH
Q 022923 187 CSFSCTNATIKKFKDAL 203 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L 203 (290)
.....|..+.++|..+|
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 44556889999998876
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.79 E-value=6e-08 Score=82.64 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-----------------------------cHhHHH
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------------------------~~~l~~ 166 (290)
+++++||+||++||+.|....+.+.++.++|+ ++.|+.|+.|. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999986 58888887753 224677
Q ss_pred hcCccccCceEEEeCCCceeeeec---------CCccCHHHHHHHHHhhCCC
Q 022923 167 SLNVHVLPFFRFYRGAHGRVCSFS---------CTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 167 ~~~I~~~PT~~~~~~G~~~v~~~~---------~g~~~~~~l~~~L~k~~~~ 209 (290)
.|+|..+|++++++.++ ++.... .+..+.+++.+.|+..+..
T Consensus 104 ~~~v~~~P~~~lid~~G-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDG-KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCC-eEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 89999999999996433 343221 0224667888888877643
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.76 E-value=3.8e-08 Score=66.81 Aligned_cols=60 Identities=28% Similarity=0.505 Sum_probs=52.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHH---hcCccccCceEEEeCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA 182 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~---~~~I~~~PT~~~~~~G 182 (290)
++.||++||++|+.+.+.+.++....+++.+..+|++......+ .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999995556789999999998776655 8999999999999776
No 112
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.75 E-value=1.1e-07 Score=84.69 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=76.4
Q ss_pred HHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-----------ccHhHHHhcCccccCceEEE
Q 022923 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 111 ~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------~~~~l~~~~~I~~~PT~~~~ 179 (290)
.+.+....++.-|++||.+.|+.|+.+.|.+..++++| ++.+..|++| .+.+++++++|..+|+++++
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv 190 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLV 190 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEE
Confidence 33333345788999999999999999999999999999 7777777776 35789999999999999988
Q ss_pred eCCCceeeeecCCccCHHHHHHHH
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
..+.........|..+.++|.+-|
T Consensus 191 ~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 191 NPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred ECCCCeEEEEeeecCCHHHHHHhh
Confidence 776656777777899999998754
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.73 E-value=8.6e-08 Score=80.36 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEec--------cc---cHhHHHh-cC--------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNY--------EE---HKSMCYS-LN-------------- 169 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~--------d~---~~~l~~~-~~-------------- 169 (290)
.+|++||+|||+||++|+...|.+.++.++|+ ++.++.|++ +. ....+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57899999999999999999999999999985 589999885 11 1222321 21
Q ss_pred ---------c---cccCc----eEEE-eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 170 ---------V---HVLPF----FRFY-RGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 170 ---------I---~~~PT----~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+ .++|+ .+++ ++| ++.....|..+.+++...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G--~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEG--QVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCC--cEEEEECCCCCHHHHHHHHHHh
Confidence 1 13675 3444 344 4666666888888888887764
No 114
>PLN02412 probable glutathione peroxidase
Probab=98.72 E-value=8.3e-08 Score=82.00 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc--------ccHhH----HHhcC--------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE--------EHKSM----CYSLN-------------- 169 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d--------~~~~l----~~~~~-------------- 169 (290)
.+|++||+||++||++|+...|.+.++.++|. ++.++.|+++ ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 57999999999999999999999999999986 4889998864 11121 12211
Q ss_pred --------------------ccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 170 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 170 --------------------I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
|...|+.++++.+ |++.....|..+.+++...|++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~-G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKE-GKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCC-CcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3345776666332 2466666688888899888887753
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.72 E-value=5.4e-08 Score=70.08 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCCceeeeecCCccCHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 198 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~ 198 (290)
+..||++||++|+.+.+.+++ .++.+..+|+++++. +.+.+++.++|++++. |+ + . .+.+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~--~--~--~g~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK--I--I--VGFDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE--E--E--eeCCHHH
Confidence 567999999999999988876 368899999987654 5667999999999884 43 2 2 2357788
Q ss_pred HHHHHH
Q 022923 199 FKDALA 204 (290)
Q Consensus 199 l~~~L~ 204 (290)
+.++|+
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 877763
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.67 E-value=1.1e-07 Score=69.58 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=51.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHh-----cCccccCceEEEeCCCceeeeecCCccCHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGAHGRVCSFSCTNATIK 197 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~-----~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~ 197 (290)
++.||++||++|+.+.+.+.++ ++.+-.+|++++...... +++..+|++ ++.+|. +. ...+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~l----~~~~~~ 69 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--FL----TNPSAA 69 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--Ee----cCCCHH
Confidence 5679999999999999998776 455667888877666555 389999997 566664 22 245555
Q ss_pred HHHHHHH
Q 022923 198 KFKDALA 204 (290)
Q Consensus 198 ~l~~~L~ 204 (290)
++.+.|.
T Consensus 70 ~~~~~l~ 76 (77)
T TIGR02200 70 QVKAKLQ 76 (77)
T ss_pred HHHHHhh
Confidence 6666554
No 117
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-08 Score=86.76 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=77.0
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCcc------
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVH------ 171 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~------ 171 (290)
.+...++.+.+++.+..+..+.++|.|||.|.+.|+...|.+.+|..+|. +.+|.+||+...++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 56677788889999988888999999999999999999999999999985 4999999999999999999886
Q ss_pred ccCceEEEeCCC
Q 022923 172 VLPFFRFYRGAH 183 (290)
Q Consensus 172 ~~PT~~~~~~G~ 183 (290)
.+||+++|++|+
T Consensus 205 QLPT~ilFq~gk 216 (265)
T KOG0914|consen 205 QLPTYILFQKGK 216 (265)
T ss_pred cCCeEEEEccch
Confidence 689999999998
No 118
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.61 E-value=1.6e-07 Score=78.69 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d 159 (290)
.+|+|+|+|||+||+ |+...|.+.++.++|. ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 479999999999999 9999999999999985 4888888753
No 119
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.56 E-value=4.5e-07 Score=74.57 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=53.6
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc---CccccCceEEEeCC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGA 182 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~I~~~PT~~~~~~G 182 (290)
++..+.+.....+.-++.|..+|||.|+...|.+.++++..+++.+--+..|++.++.++| +...+|+|+|++++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3444555555677789999999999999999999999999999888888888888887765 68999999999655
No 120
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.53 E-value=7e-07 Score=72.37 Aligned_cols=97 Identities=12% Similarity=0.189 Sum_probs=62.7
Q ss_pred eCCHhHHHHHHHh--cCCCeEEEEEeC-------CCChHHHHHHHHHHHHHHHCC-CcEEEEEecccc-------HhHHH
Q 022923 104 VASAQDLVESLWH--AGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH-------KSMCY 166 (290)
Q Consensus 104 I~s~~~f~~~l~~--~~~k~vlV~FyA-------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~-------~~l~~ 166 (290)
|...++|.+.+.. ..+++++|+|++ +||+.|+...|.+++.....+ +..|+.|.+... ...-+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 3456788888863 567899999995 499999999999998887764 688888887432 22333
Q ss_pred --hcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 167 --SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 167 --~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+++|.++||++-|..++ ++.+.. -.+.+.+..++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~-rL~e~e--~~~~~lv~~~~ 117 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGE-RLVEEE--CLNEDLVEMFF 117 (119)
T ss_dssp --CC---SSSEEEECTSS--EEEHHH--HH-HHHHHHHH
T ss_pred cceeeeeecceEEEECCCC-ccchhh--hccHHHHHHHh
Confidence 59999999999997774 544322 13444444444
No 121
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.52 E-value=9.6e-07 Score=75.37 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------------------cHhHHHhcCcccc
Q 022923 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVL 173 (290)
Q Consensus 118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~I~~~ 173 (290)
.+|+++|+||++| |++|+...|.+.++.+++.++.++.|+.|. ...+++.|+|...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4789999999999 999999999999999998888888887653 1256778888777
Q ss_pred C
Q 022923 174 P 174 (290)
Q Consensus 174 P 174 (290)
|
T Consensus 123 ~ 123 (167)
T PRK00522 123 E 123 (167)
T ss_pred c
Confidence 7
No 122
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.51 E-value=1.2e-06 Score=79.99 Aligned_cols=96 Identities=8% Similarity=0.154 Sum_probs=78.4
Q ss_pred HHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----------HhHHHhcCccccCceEEEe
Q 022923 112 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 112 ~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------~~l~~~~~I~~~PT~~~~~ 180 (290)
+.+..-.++.-|++||.+-|+.|.++.|.+..++++|+ +.++-|++|.. ..++++++|..+|++++..
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 33433356789999999999999999999999999994 77777777643 5689999999999998887
Q ss_pred CCCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 181 GAHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
.+.++......|..+.++|.+-|...+.
T Consensus 222 ~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 222 PKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred CCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 7655677777799999999988876653
No 123
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.7e-07 Score=82.86 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=80.4
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~ 180 (290)
++.|...++| +.. +++.++++||++||..|+++...++.+++..+++.|++++.++.++++..+.|...|+++++.
T Consensus 3 v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred ceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 5667777788 222 789999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 181 GAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 181 ~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.|+ .+... .+.+...+...++.+.
T Consensus 79 ~~~-~v~~l--~~~~~~~~~~~~~~~~ 102 (227)
T KOG0911|consen 79 LGE-KVDRL--SGADPPFLVSKVEKLA 102 (227)
T ss_pred cch-hhhhh--hccCcHHHHHHHHHhh
Confidence 887 23222 2444444444444443
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.47 E-value=6.6e-07 Score=71.28 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=55.5
Q ss_pred CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcc--
Q 022923 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH-- 171 (290)
Q Consensus 118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~-- 171 (290)
.+++++|.||+. ||++|+...+.+.++.++|+ ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 99999999999999998875 68999998764 33567888888
Q ss_pred ----ccCceEEEeCCC
Q 022923 172 ----VLPFFRFYRGAH 183 (290)
Q Consensus 172 ----~~PT~~~~~~G~ 183 (290)
.+|++++++.+.
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 888888886554
No 125
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.47 E-value=9.1e-07 Score=72.18 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=61.7
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcccc
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 173 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~~ 173 (290)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.|..|. ...+++.|++..+
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 6899999999999999988774 57777776543 3457788999988
Q ss_pred ---------CceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 174 ---------PFFRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 174 ---------PT~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
|++++++..+ ++.....|....+.+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G-~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDG-KIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCC-EEEEEEecCCccchHHHH
Confidence 8888886432 455444466555555443
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.47 E-value=8.5e-07 Score=72.98 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCCeEEEEEeCCC-ChHHHHHHHHHHHHHHHCCCcEEEEEecccc-----------------------HhHHHhcCccc-
Q 022923 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------------------KSMCYSLNVHV- 172 (290)
Q Consensus 118 ~~k~vlV~FyA~W-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------------------~~l~~~~~I~~- 172 (290)
.+|++||+||+.| |++|+...|.+.++.++++++.|+.|+.|.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4789999999999 6999999999999999998999999987531 34566777753
Q ss_pred -----cCceEEEe
Q 022923 173 -----LPFFRFYR 180 (290)
Q Consensus 173 -----~PT~~~~~ 180 (290)
.|+.++++
T Consensus 105 ~~~~~~~~~~iid 117 (143)
T cd03014 105 DLGLLARAVFVID 117 (143)
T ss_pred cCCccceEEEEEc
Confidence 57777774
No 127
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=2.3e-06 Score=69.29 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=86.6
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~ 180 (290)
.++++..+.++.+.....+.|+|-|.-+|-+.|.++...+..+++...+ ..++-||+++-+++.+-|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 4577888899999888899999999999999999999999999999877 688899999999999999999999999887
Q ss_pred CCCceeeeecCC--------ccCHHHHHHHHHhhC
Q 022923 181 GAHGRVCSFSCT--------NATIKKFKDALAKHT 207 (290)
Q Consensus 181 ~G~~~v~~~~~g--------~~~~~~l~~~L~k~~ 207 (290)
+++-....+..| -.+.++|++.++-..
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 876222222212 245677887777543
No 128
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.43 E-value=6.2e-08 Score=86.06 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEEeCC
Q 022923 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 105 ~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
.+.+++.+.+ ..-.++.|+|+||+.|+.+.|.|+.++.--. +|.+..||++.++.|.-+|-|...|||.=.++|
T Consensus 29 ~~eenw~~~l----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 29 IDEENWKELL----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred ecccchhhhh----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence 3457888887 3348999999999999999999999887544 489999999999999999999999999988898
Q ss_pred CceeeeecCCccCHHHHHHHHHhh
Q 022923 183 HGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 183 ~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
. ...|. |.++..+|+.|++..
T Consensus 105 e--Frrys-gaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 105 E--FRRYS-GARDKNDFISFEEHR 125 (248)
T ss_pred c--ccccc-CcccchhHHHHHHhh
Confidence 6 55555 899999999998754
No 129
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.41 E-value=2.6e-07 Score=77.88 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=51.5
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CcEEEEEeccc-------------------------cHhHHHhc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEE-------------------------HKSMCYSL 168 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~-------------------------~~~l~~~~ 168 (290)
.+|.|.+||.|.||++||.+.|.+.++.++.. .+.++-|+-|. ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 57999999999999999999999988877642 35555555442 23578899
Q ss_pred CccccCceEEEeCCC
Q 022923 169 NVHVLPFFRFYRGAH 183 (290)
Q Consensus 169 ~I~~~PT~~~~~~G~ 183 (290)
+|.++|++++.+...
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 999999998886543
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.38 E-value=3e-06 Score=62.94 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=56.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCC-ccCHHHHHHH
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDA 202 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g-~~~~~~l~~~ 202 (290)
|.+++++|+.|..+...++++...++ +.+--+|.++.+++ .+|+|.++|++++ ||+ +. +. | ..+.++|+++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~-~~-G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VV-FV-GRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EE-EE-SS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EE-EE-ecCCCHHHHHHH
Confidence 34478889999999999999999995 88888888777777 9999999999955 775 32 33 5 6788888888
Q ss_pred HH
Q 022923 203 LA 204 (290)
Q Consensus 203 L~ 204 (290)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 131
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.38 E-value=2.3e-06 Score=74.06 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCCeE-EEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------c-Hh----HHHh---------------
Q 022923 118 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H-KS----MCYS--------------- 167 (290)
Q Consensus 118 ~~k~v-lV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~-~~----l~~~--------------- 167 (290)
.+|++ ++.|||+||++|+...|.++++.++|. ++.++.|+++. . .+ +.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46754 556699999999999999999999885 58999997631 0 10 0111
Q ss_pred ---------------------cCccccCc---eEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 168 ---------------------LNVHVLPF---FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 168 ---------------------~~I~~~PT---~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+++.++|+ .+++ |.+|++.....|..+.+.+.+.|++.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflI-D~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLI-DGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEE-CCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 13457785 2333 333457666668888888888888765
No 132
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.37 E-value=3.3e-06 Score=72.20 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=62.4
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 166 (290)
.+|++||+|| +.||++|....+.+.++.++|. ++.++.|.+|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 8999999999999999998874 47777776542 223567
Q ss_pred hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
.|++. .+|+.++++... ++.... ....+.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G-~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEG-IIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78886 567887775333 343333 1234677777777655
No 133
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.36 E-value=4.5e-06 Score=75.85 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-----------cHhHHHhcCccccCceEEEeCCCcee
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGAHGRV 186 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~I~~~PT~~~~~~G~~~v 186 (290)
.++.-|++||.+.|+.|.++.|.+..++++| ++.++-|++|. +...+++++|..+|++++...+.+..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4668899999999999999999999999998 45555555542 34567899999999999987766567
Q ss_pred eeecCCccCHHHHHHHHHhhCC
Q 022923 187 CSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
.....|..+.++|.+-|...+.
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 7777799999999988876653
No 134
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.31 E-value=5.3e-06 Score=72.11 Aligned_cols=87 Identities=8% Similarity=-0.021 Sum_probs=62.8
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~ 169 (290)
.+|++||+|| ++||++|....+.+.++.+++. ++.++.|.+|. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999999888773 57777776552 235678889
Q ss_pred cc------ccCceEEEe-CCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 170 VH------VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 170 I~------~~PT~~~~~-~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
|. ..|+.++++ +|+ +.... ..+++.+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~--I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGV--IQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 468877774 444 33222 2235778887777544
No 135
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.31 E-value=6e-06 Score=66.66 Aligned_cols=89 Identities=9% Similarity=0.104 Sum_probs=68.8
Q ss_pred cCCCeEEEEEeCC----CChHHHHHH--HHHHHHHHHCCCcEEEEEeccc--cHhHHHhcCccccCceEEEe--CCCcee
Q 022923 117 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAHGRV 186 (290)
Q Consensus 117 ~~~k~vlV~FyA~----WC~~Ck~~~--p~l~~la~~~~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~--~G~~~v 186 (290)
.+.|.++||||++ ||..|+... |.+.++-. .++.+...|++. ...++..+++.++|++.++. +++..+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 5799999999999 999998764 34444443 358888888874 45689999999999998883 444345
Q ss_pred eeecCCccCHHHHHHHHHhhC
Q 022923 187 CSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.....|..++++|...|....
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 555669999999999988764
No 136
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=4.1e-06 Score=63.33 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=57.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcC--ccccCceEEEeCCCceeeeecCCccC
Q 022923 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTNAT 195 (290)
Q Consensus 122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g~~~ 195 (290)
-++.|+.+||++|++....|+++..++.++.+..+|++++. ++.+.++ +..+|+++ .+|+ .+. .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~-~ig-------g 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK-HIG-------G 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE-EEc-------C
Confidence 36789999999999999999999988888999999998643 4555554 58899975 3775 221 2
Q ss_pred HHHHHHHHHhhC
Q 022923 196 IKKFKDALAKHT 207 (290)
Q Consensus 196 ~~~l~~~L~k~~ 207 (290)
.++|.+++++++
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 367777777665
No 137
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.27 E-value=4.2e-05 Score=64.92 Aligned_cols=118 Identities=13% Similarity=0.227 Sum_probs=94.6
Q ss_pred ccchhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCe-EEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccH
Q 022923 85 RIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK 162 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~ 162 (290)
....+..|.....-|.+.+++. +++.... ..+++ +++.|+.........+...+..+++++.+ +.|+.+|++..+
T Consensus 63 ~~~~l~~fI~~~~~P~v~~~t~-~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~ 139 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLVPELTP-ENFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP 139 (184)
T ss_dssp SHHHHHHHHHHHSSTSCEEEST-THHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH
T ss_pred CHHHHHHHHHHhccccccccch-hhHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH
Confidence 3445678999999999999986 4777777 44555 88888877788899999999999999866 999999999989
Q ss_pred hHHHhcCcc--ccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923 163 SMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 163 ~l~~~~~I~--~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
.+++.|++. .+|+++++....++..-...+..+.+.+.+||++
T Consensus 140 ~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 140 RLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999999999 9999999984443332223478999999999874
No 138
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.25 E-value=7.1e-06 Score=67.31 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccccH
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEHK 162 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~~ 162 (290)
++.+|++||++||+.|+...|.+.++.+++ .++.++.|+.+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 344555556999999999999999999988 46889999876543
No 139
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.24 E-value=2.5e-06 Score=63.48 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=44.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|+++||++|+.+.+.+.++.-. +.+.++.||.+++. .+.+.+++..+|+++ .+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 4789999999999999999998621 23788888876543 366778999999983 3665
No 140
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.22 E-value=1e-05 Score=66.76 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------c--HhHHHhcCccc
Q 022923 119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------H--KSMCYSLNVHV 172 (290)
Q Consensus 119 ~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~--~~l~~~~~I~~ 172 (290)
+++++|.|| ++||+.|....|.+.++.+++. ++.++.|+.+. . ..+.+.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 9999999999999999998874 58888776542 2 45677788873
Q ss_pred ----cC--ceEEEe-CCCceeeeecCC----ccCHHHHHHHHH
Q 022923 173 ----LP--FFRFYR-GAHGRVCSFSCT----NATIKKFKDALA 204 (290)
Q Consensus 173 ----~P--T~~~~~-~G~~~v~~~~~g----~~~~~~l~~~L~ 204 (290)
+| +.++++ +|+ +.....| ..+..++.+.|+
T Consensus 108 ~~~~~~~~~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGI--IRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCE--EEEEEecCCcccccchhHHHHhh
Confidence 33 666664 443 4333222 345555555443
No 141
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.21 E-value=2.1e-05 Score=62.27 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=69.0
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccH----hHHHhcCcc-ccCc
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK----SMCYSLNVH-VLPF 175 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~----~l~~~~~I~-~~PT 175 (290)
.+|++.++|++++..+.+++++|+=+++.|+-.......|++.....++ +.++.+|+-++. .++++|||. .-|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4688999999999988899999999999999999999999999988776 999999998765 567899987 6899
Q ss_pred eEEEeCCCceeeeecCCccCHHHH
Q 022923 176 FRFYRGAHGRVCSFSCTNATIKKF 199 (290)
Q Consensus 176 ~~~~~~G~~~v~~~~~g~~~~~~l 199 (290)
+++++||+ -+........+.++|
T Consensus 82 ~ili~~g~-~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGK-VVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTE-EEEEEEGGG-SHHHH
T ss_pred EEEEECCE-EEEECccccCCHHhc
Confidence 99999998 343333355666655
No 142
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.20 E-value=1.3e-05 Score=66.82 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=54.4
Q ss_pred CCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------cHhHHHhcCcccc
Q 022923 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 173 (290)
Q Consensus 118 ~~k~vlV~FyA~-WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~I~~~ 173 (290)
.++++||+||+. ||+.|....+.+.++.+++. ++.++.|+.|. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 68889999999998888873 58888887653 2346778887654
Q ss_pred ------------CceEEEe-CCCceeeeecCCccCHHH
Q 022923 174 ------------PFFRFYR-GAHGRVCSFSCTNATIKK 198 (290)
Q Consensus 174 ------------PT~~~~~-~G~~~v~~~~~g~~~~~~ 198 (290)
|+.++++ +| ++.....|....+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G--~i~~~~~g~~~~~~ 144 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADG--KIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccCcceEEEEECCCC--EEEEEEcCCCcchh
Confidence 5555664 44 45544444433333
No 143
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-05 Score=66.80 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=69.1
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHH---HHHHHC-CCcEEEEEeccc----------------cHhHHHhcCccccCce
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMN-PDVQFLQVNYEE----------------HKSMCYSLNVHVLPFF 176 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~----------------~~~l~~~~~I~~~PT~ 176 (290)
..++..++.|-.+.|..|.++...+. ++.+.+ +++.++.+|+.. ..+|++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 46899999999999999999998775 444444 347778777642 3589999999999999
Q ss_pred EEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 177 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 177 ~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+||+..+ .......|....++|...++-..
T Consensus 120 vFfdk~G-k~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 120 VFFDKTG-KTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEEcCCC-CEEEecCCCCCHHHHHHHHHHHH
Confidence 9995443 34444558899999988776543
No 144
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.18 E-value=1.5e-05 Score=70.20 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=64.8
Q ss_pred CCCeEEE-EEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHh
Q 022923 118 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 167 (290)
Q Consensus 118 ~~k~vlV-~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~ 167 (290)
.++.++| .||++||+.|....+.+.++.+++. ++.++.|++|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4566655 6899999999999999998888774 46777776542 3457788
Q ss_pred cCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhhC
Q 022923 168 LNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT 207 (290)
Q Consensus 168 ~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~~ 207 (290)
|+|. .+|+.++++.++ ++.... .++++.+++...|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G-~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQ-IVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8984 589998886443 343222 45689999999888664
No 145
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.13 E-value=1.4e-05 Score=68.14 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=48.2
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEeccccHhHHHhc--------CccccCc
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCYSL--------NVHVLPF 175 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d~~~~l~~~~--------~I~~~PT 175 (290)
+-|...- ..+|+|+|+++.+||..|+.|... +. ++++.+ .++.-++||.++.+++...| +.-|+|+
T Consensus 28 ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 3444443 468999999999999999999863 32 455444 35888999999999998888 7889999
Q ss_pred eEEEeCCC
Q 022923 176 FRFYRGAH 183 (290)
Q Consensus 176 ~~~~~~G~ 183 (290)
.+|+....
T Consensus 106 ~vfltPdg 113 (163)
T PF03190_consen 106 TVFLTPDG 113 (163)
T ss_dssp EEEE-TTS
T ss_pred eEEECCCC
Confidence 99886543
No 146
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.12 E-value=6.8e-05 Score=61.39 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=79.5
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCc-eEEE
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF-FRFY 179 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT-~~~~ 179 (290)
..+++..+.++++....++.|+|-|.-+|-+.|.++...+.+++++..+ ..++.||+++-+++.+.|.+. -|. ++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4677888999999988899999999999999999999999999999877 689999999999999999999 775 6666
Q ss_pred eCCCceeeeecCCc--------cCHHHHHHHHHhh
Q 022923 180 RGAHGRVCSFSCTN--------ATIKKFKDALAKH 206 (290)
Q Consensus 180 ~~G~~~v~~~~~g~--------~~~~~l~~~L~k~ 206 (290)
-+++-....+..|+ .+.++|++.++-.
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 56652223332222 3467777777643
No 147
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.12 E-value=1.2e-05 Score=57.47 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=47.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc----CccccCceEEEeCCCceeeeecCCccCHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRFYRGAHGRVCSFSCTNATIKK 198 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~----~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~ 198 (290)
++.|+++||++|+.+...+.+. ++.+..+|++.+....+.+ ++..+|++++ +|+ .+ ++.+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-~i-----~g~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-HL-----SGFRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-EE-----ecCCHHH
Confidence 5779999999999998888763 5777788887765544443 6899999976 343 22 3456666
Q ss_pred HHHH
Q 022923 199 FKDA 202 (290)
Q Consensus 199 l~~~ 202 (290)
|+++
T Consensus 69 l~~~ 72 (73)
T cd02976 69 LRAL 72 (73)
T ss_pred HHhh
Confidence 6654
No 148
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.12 E-value=3e-05 Score=67.65 Aligned_cols=88 Identities=8% Similarity=0.006 Sum_probs=64.8
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc-------------------------cHhHHHhcC
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~~~ 169 (290)
.+|+++|+|| ++||+.|....+.+.++.+++. ++.++.|+.|. +..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 9999999999999999998873 57777776553 346788899
Q ss_pred c----ccc--CceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 170 V----HVL--PFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 170 I----~~~--PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
+ .++ |+.++++.++ ++.... ..+++.+++.+.|+..
T Consensus 110 v~~~~~g~~~r~tfIID~~G-~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQG-IIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 8888885332 333221 2447888888887654
No 149
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1.2e-05 Score=64.60 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHh-cCCCeEEEEEeC--------CCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc-------cHhHHHh
Q 022923 105 ASAQDLVESLWH-AGDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 167 (290)
Q Consensus 105 ~s~~~f~~~l~~-~~~k~vlV~FyA--------~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~~ 167 (290)
.-.++|.+.+.+ .+++.++|+|++ +||+.|.+..|.+.+..+..+ ++.|+.|++.+ +..+-..
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 334677777763 256669999995 699999999999998888664 69999999864 3345566
Q ss_pred cCc-cccCceEEEeCCCcee
Q 022923 168 LNV-HVLPFFRFYRGAHGRV 186 (290)
Q Consensus 168 ~~I-~~~PT~~~~~~G~~~v 186 (290)
.++ .++||++-|+++.++.
T Consensus 90 ~~~lt~vPTLlrw~~~~~rL 109 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKRQPQRL 109 (128)
T ss_pred CCceeecceeeEEcCccccc
Confidence 677 9999999997543343
No 150
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.07 E-value=1.8e-05 Score=64.62 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCCeEEEEEeCCCChH-HHHHHHHHHHHHHHCC-----CcEEEEEecc
Q 022923 118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYE 159 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~-Ck~~~p~l~~la~~~~-----~v~~~~Vd~d 159 (290)
.+++++|+||++||++ |....+.+.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999997 9999999999998874 3888888765
No 151
>PRK15000 peroxidase; Provisional
Probab=98.06 E-value=3e-05 Score=68.29 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=64.8
Q ss_pred CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 166 (290)
++++++|+||+ +||+.|....+.+.++.+++. ++.++.|.+|. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 599999999999999998874 57777777662 224667
Q ss_pred hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
.|+|. .+|+.++++..+ ++.... ..+++.+++.+.|+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G-~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANG-IVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 689888886332 333322 2347888888887654
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.01 E-value=4.5e-05 Score=76.96 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCeE-EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923 119 DKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK 197 (290)
Q Consensus 119 ~k~v-lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~ 197 (290)
++++ +-.|.+++|++|......+++++..++++..-.||.++.++++++|+|.++|++++ ||+ +. +. |..+.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~--~~-~~-G~~~~~ 548 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ--QV-YF-GKKTIE 548 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE--EE-Ee-eCCCHH
Confidence 4555 44568999999999999999999999999999999999999999999999999988 564 32 22 667999
Q ss_pred HHHHHH
Q 022923 198 KFKDAL 203 (290)
Q Consensus 198 ~l~~~L 203 (290)
++.++|
T Consensus 549 ~~~~~~ 554 (555)
T TIGR03143 549 EMLELI 554 (555)
T ss_pred HHHHhh
Confidence 988875
No 153
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.00 E-value=2.7e-05 Score=67.80 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d 159 (290)
.+|++||.|||+||+.|++ .+.|+++.++|. ++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999975 889999999985 5899999884
No 154
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.99 E-value=3.8e-05 Score=62.40 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEecc
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYE 159 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d 159 (290)
.+++++|+|| +.||+.|....+.+.++.+++ .++.|+.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5889999999 789999999999999999886 45888888765
No 155
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.93 E-value=5e-05 Score=68.47 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=61.3
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEE-----------------------------------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV----------------------------------------- 156 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~V----------------------------------------- 156 (290)
+++.+++.|.-+.|++|+++.+.+.++.+. ++++..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 567889999999999999999999887542 2222211
Q ss_pred ---eccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 157 ---NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 157 ---d~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+++++.++++++||+++|||+ |.||+ +. .|..+.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~--~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT--LV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCe--Ee---eCCCCHHHHHHHHHHc
Confidence 223466789999999999999 66776 22 3778999999998864
No 156
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.92 E-value=0.0002 Score=54.75 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=72.3
Q ss_pred eEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEe
Q 022923 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (290)
Q Consensus 102 ~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~ 180 (290)
.+|++.+++...+ ..++.++|-|+.++|+ .....+.++++.+. ++.|+.++ +.++++++++.. |++++|+
T Consensus 2 ~~i~s~~~l~~~~--~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFL--DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHh--ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 4677888888866 4688899999999998 46678888988885 68888776 567788888764 9999998
Q ss_pred CCCceeeeecCCccCHHHHHHHHHh
Q 022923 181 GAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 181 ~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
+.......|. |..+.+.|.+||..
T Consensus 73 ~~~~~~~~y~-g~~~~~~l~~fi~~ 96 (97)
T cd02981 73 PFEEEPVEYD-GEFTEESLVEFIKD 96 (97)
T ss_pred CcccCCccCC-CCCCHHHHHHHHHh
Confidence 7543445555 66778999999875
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.91 E-value=8e-05 Score=74.41 Aligned_cols=94 Identities=13% Similarity=0.248 Sum_probs=75.6
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
++..+.+..-.+..-+..|+++.|++|......+++++..+++|.+-.||..++++++++|+|.++|++++ ||+ .+
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~- 180 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE-EF- 180 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-EE-
Confidence 34444454323444588899999999999999999999999999999999999999999999999999965 554 22
Q ss_pred eecCCccCHHHHHHHHHhhC
Q 022923 188 SFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~ 207 (290)
..|..+.++|.+.+.+..
T Consensus 181 --~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 181 --GQGRMTLEEILAKLDTGA 198 (517)
T ss_pred --EecCCCHHHHHHHHhccc
Confidence 227788889988887653
No 158
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.90 E-value=0.00042 Score=56.96 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=83.2
Q ss_pred CCeeEeCCHhHHHHHHHhcCCCeEEEEEeCC--CCh-HH-HHHHHHHHHHHHHCC-C-cEEEEEeccccHhHHHhcCcc-
Q 022923 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSP--GCG-GC-KALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVH- 171 (290)
Q Consensus 99 ~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~--WC~-~C-k~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~I~- 171 (290)
+.++++++.+.+++... .++..+|-|.-. -|. .+ ..+...+.+++++|. + +.|+.+|.+++..+.+.|||.
T Consensus 2 ~~~~~l~~~~~~~~~C~--~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCE--EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhcc--CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 57889999888888873 456777777532 132 23 456778899999985 4 899999999999999999995
Q ss_pred -ccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCC
Q 022923 172 -VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 210 (290)
Q Consensus 172 -~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~ 210 (290)
.+|+++++...++ ......|..+.+.+.+|+++++.+.
T Consensus 80 ~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 80 FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCC
Confidence 4999999977543 2222347789999999999998553
No 159
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.90 E-value=7.7e-05 Score=61.14 Aligned_cols=39 Identities=33% Similarity=0.722 Sum_probs=32.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEE
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~V 156 (290)
..+.+++.|+.++|++|+.+.|.+.++..+++++.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 467899999999999999999999998888776544443
No 160
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.89 E-value=3.5e-05 Score=67.92 Aligned_cols=106 Identities=19% Similarity=0.369 Sum_probs=86.8
Q ss_pred CeeEeCCHhHHHHHHHhc-CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEE
Q 022923 100 NMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~-~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~ 178 (290)
.|.++++..+|.+.+... +.-.++|+.|-+.-..|-.+...+.-|+.+||-++|.+|-.. +-....+|...++|+++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceEEE
Confidence 689999999999999743 456788999999999999999999999999999999999844 456688999999999999
Q ss_pred EeCCCceeeee------cCCccCHHHHHHHHHhhC
Q 022923 179 YRGAHGRVCSF------SCTNATIKKFKDALAKHT 207 (290)
Q Consensus 179 ~~~G~~~v~~~------~~g~~~~~~l~~~L~k~~ 207 (290)
|++|. .+..| ........++..||+++-
T Consensus 218 YkgGe-LIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 218 YKGGE-LIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred eeCCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 99997 22222 123356677888888774
No 161
>PRK13189 peroxiredoxin; Provisional
Probab=97.86 E-value=0.00012 Score=65.60 Aligned_cols=88 Identities=5% Similarity=0.007 Sum_probs=61.8
Q ss_pred CCC-eEEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923 118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS 167 (290)
Q Consensus 118 ~~k-~vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~ 167 (290)
.++ .+|+.||++||+.|....+.+.++.++| .++.++.|.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 4556788999999999999999998887 357777776652 2346778
Q ss_pred cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
|++. .+|+.++++..+ ++.... ..+++.+++...|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKG-IIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 467777775332 343322 2567888888888755
No 162
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.84 E-value=0.00016 Score=66.28 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=64.0
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 166 (290)
+++++|++|| ++||+.|....+.+.++.+++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4678888888 8999999999999999988873 56777776553 235788
Q ss_pred hcCcc-----ccCceEEEe-CCCceeeee----cCCccCHHHHHHHHHhh
Q 022923 167 SLNVH-----VLPFFRFYR-GAHGRVCSF----SCTNATIKKFKDALAKH 206 (290)
Q Consensus 167 ~~~I~-----~~PT~~~~~-~G~~~v~~~----~~g~~~~~~l~~~L~k~ 206 (290)
.||+. ..|+.++++ +|+ +... ...+++.+++.+.|+..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~--I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGV--VKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 589988886 444 3221 13457888888888754
No 163
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.81 E-value=0.0001 Score=56.01 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=55.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCc--cccCceEEEeCCCceeeeecCCccCH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFRFYRGAHGRVCSFSCTNATI 196 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I--~~~PT~~~~~~G~~~v~~~~~g~~~~ 196 (290)
++.|..+||++|++....|+++..+++++.+..+|++.+ .++.+.++- ..+|++++ +|+ .. |+ .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~--~i----gG--~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK--HV----GG--C 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE--Ee----cC--H
Confidence 677999999999999999999987777788888888743 356666663 78999843 665 21 22 3
Q ss_pred HHHHHHHHhhC
Q 022923 197 KKFKDALAKHT 207 (290)
Q Consensus 197 ~~l~~~L~k~~ 207 (290)
++|.++++++.
T Consensus 72 ~dl~~~~~~~~ 82 (86)
T TIGR02183 72 TDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHhcc
Confidence 66777777654
No 164
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.78 E-value=0.00016 Score=63.72 Aligned_cols=86 Identities=7% Similarity=0.039 Sum_probs=59.8
Q ss_pred Ce-EEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc---------------------------cHhHHHhcC
Q 022923 120 KL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSLN 169 (290)
Q Consensus 120 k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~~~ 169 (290)
+. +|+.||++||+.|....+.+.++.+++. ++.++.|++|. +..+++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 5668999999999999999999998874 58888887663 235678888
Q ss_pred cc----ccC----ceEEEeCCCceeeeecC----CccCHHHHHHHHHhh
Q 022923 170 VH----VLP----FFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH 206 (290)
Q Consensus 170 I~----~~P----T~~~~~~G~~~v~~~~~----g~~~~~~l~~~L~k~ 206 (290)
+. +.| +.++++.. +++..... .+++.+++.+.|+++
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~-G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPD-KKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 76 334 45566422 23433321 257788888888765
No 165
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.78 E-value=0.00019 Score=64.00 Aligned_cols=88 Identities=8% Similarity=0.042 Sum_probs=63.5
Q ss_pred CCCe-EEEEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923 118 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS 167 (290)
Q Consensus 118 ~~k~-vlV~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~ 167 (290)
.++. ||+.||++||+.|....+.+.++.++| .++.++.|++|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 567999999999999999999999988 357888887663 2246778
Q ss_pred cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
|++. .+|+.++++..+ ++.... ..+++.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG-~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKG-TIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCC-EEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 679988886433 232221 2457888888888754
No 166
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.77 E-value=7.5e-05 Score=65.17 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcE---------------------------------------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ--------------------------------------------- 152 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~--------------------------------------------- 152 (290)
..+..++.|..+.|++|+++.+.+.+. .+++.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 468899999999999999999988761 11221
Q ss_pred EEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 153 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 153 ~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
....+++++..++++++|+++|+|+ |.+|+ .+ .|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~-~~----~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR-VV----PGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCe-Ee----cCCCCHHHHHhhC
Confidence 1222333466789999999999997 77776 22 2666777777653
No 167
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.74 E-value=0.00026 Score=63.09 Aligned_cols=88 Identities=8% Similarity=0.004 Sum_probs=62.3
Q ss_pred CCCeEE-EEEeCCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccc---------------------------cHhHHHh
Q 022923 118 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE---------------------------HKSMCYS 167 (290)
Q Consensus 118 ~~k~vl-V~FyA~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~---------------------------~~~l~~~ 167 (290)
.+|.++ +.||++||+.|....+.|.++.+++ .++.++.|++|. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 4889999999999999999999988 357888887763 2346677
Q ss_pred cCcc-------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 168 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 168 ~~I~-------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
|++. .+|+.++++..+ ++.... ..+++.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKG-TVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 367777775333 333321 2457899998888765
No 168
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.64 E-value=0.00013 Score=53.90 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=42.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|+++||++|+.+...+.++.. .+.++.+|.+.+. .+.+..++..+|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 577999999999999999998865 4577777776542 35566788899996 44665
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.62 E-value=0.00045 Score=69.09 Aligned_cols=92 Identities=12% Similarity=0.272 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeee
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 188 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~ 188 (290)
+..+.+..-.+..-+-.|+++.|++|......+++++..+++|..-.+|..++++++++|+|.++|++++ ||+ .+
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~-- 181 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE-EF-- 181 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc-EE--
Confidence 3444444323455588899999999999999999999999999999999999999999999999999976 554 22
Q ss_pred ecCCccCHHHHHHHHHhh
Q 022923 189 FSCTNATIKKFKDALAKH 206 (290)
Q Consensus 189 ~~~g~~~~~~l~~~L~k~ 206 (290)
..|..+.+++.+.+.+.
T Consensus 182 -~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 182 -HNGRMDLAELLEKLEET 198 (515)
T ss_pred -EecCCCHHHHHHHHhhc
Confidence 22778888888887665
No 170
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.59 E-value=0.00041 Score=65.35 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=73.2
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHC---CCcEEEEEeccccHhHHHhcCc
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNV 170 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~------p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~I 170 (290)
.+..++. .+|.+.+. +-+..+|+||.+--. -+... ..+-+|+.+. .++.|+.||..++..+++++|+
T Consensus 35 RVi~Lne-KNfk~~lK--kyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 35 RVIDLNE-KNFKRALK--KYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp -CEEE-T-TTHHHHHH--H-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ceEEcch-hHHHHHHH--hhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 4666655 68999884 467888899988643 22222 2233555442 5799999999999999999999
Q ss_pred cccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 171 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 171 ~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
...+++.+|++|. ++.|. |.++++.|.+||...+..
T Consensus 111 ~E~~SiyVfkd~~--~IEyd-G~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 111 EEEGSIYVFKDGE--VIEYD-GERSADTLVEFLLDLLED 146 (383)
T ss_dssp -STTEEEEEETTE--EEEE--S--SHHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCc--EEEec-CccCHHHHHHHHHHhccc
Confidence 9999999999986 88888 999999999999999854
No 171
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.58 E-value=0.00046 Score=62.91 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEec---------------------------------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY--------------------------------------- 158 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~--------------------------------------- 158 (290)
..+.+|+.|.-+.|++|+++.+.+.++.+. ++|++..+.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 467789999999999999999988876554 2333322210
Q ss_pred -----------cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923 159 -----------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 204 (290)
Q Consensus 159 -----------d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~ 204 (290)
++|..+.+++||+++|+|++-+ |++.+.... |..+.++|.+.|.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d-~~G~~~~v~-G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMD-KDGTLQQVV-GLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CCCCEEEec-CCCCHHHHHHHhC
Confidence 1134477889999999999884 333333333 7778888888764
No 172
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.57 E-value=0.00052 Score=60.13 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCCeEEEEEeC-CCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHH
Q 022923 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~FyA-~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 166 (290)
.++.++|+||+ +||+.|....+.+.++.+++. ++.++.|++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47899999994 889999999999999988875 57888887652 224677
Q ss_pred hcCcc------ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhh
Q 022923 167 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKH 206 (290)
Q Consensus 167 ~~~I~------~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~ 206 (290)
.|++. .+|+.++++... ++.... ..+++.+++.+.|+..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G-~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKG-MLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88885 367777775443 333322 2346777777776644
No 173
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.56 E-value=0.00036 Score=48.97 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=42.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|..+||++|+.....|++. ++.+-.+|++++++. .+..+...+|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5679999999999999888554 588888898876543 33459999999886 554
No 174
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.49 E-value=0.00057 Score=49.87 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=47.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc---CccccCceEEEeCCCceeeeecCCccCHHHHH
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK 200 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~ 200 (290)
..|..++|+.|++....|++. ++.|-.+|+++++...+.+ +...+|++++ +|+..+ ++.+.++|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~~-----~G~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLSW-----SGFRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcEE-----eccCHHHHH
Confidence 467889999999999988763 6888888988877665554 8889999755 443222 455666665
Q ss_pred H
Q 022923 201 D 201 (290)
Q Consensus 201 ~ 201 (290)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 175
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.36 E-value=0.0022 Score=53.15 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=60.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccc----------------------------------
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEE---------------------------------- 160 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~---------------------------------- 160 (290)
..+.+|+.|+..-|++|+.+.+.+.++.+++ +++.|...++-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999998887 347666665310
Q ss_pred ----------------------------------cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923 161 ----------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 161 ----------------------------------~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
...++++++|.++|||++ ||+ .+ .+..+.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~-~~----~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK-YV----VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC-EE----ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE-Ee----CCCCCHHHHHHHHcC
Confidence 011345679999999998 776 22 368899999999875
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.36 E-value=0.0028 Score=63.98 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=83.3
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEe-CCCcee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR-GAHGRV 186 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~-~G~~~v 186 (290)
+++.+.+..-.+...++.|+.+.|..|..+...++++++.-+.+++...|..++.+++++|+|...|+|.+++ +|+..-
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~ 434 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG 434 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccc
Confidence 4466666544455577788898999999999999999988788999889988899999999999999999995 443212
Q ss_pred eeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923 187 CSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA 229 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~ 229 (290)
+.|. |-..-.+|..||...+... ++...++++..+.+..
T Consensus 435 i~f~-g~P~G~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~ 473 (555)
T TIGR03143 435 LKFH-GVPSGHELNSFILALYNAA---GPGQPLGEELLEKIKK 473 (555)
T ss_pred eEEE-ecCccHhHHHHHHHHHHhc---CCCCCCCHHHHHHHHh
Confidence 3444 5555566666666554321 2334555555444443
No 177
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.33 E-value=0.00066 Score=47.99 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=40.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|+++||++|+.+...+.+.. +.+..+|++.+.++ .+..+...+|++ |.+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 56789999999999999988774 77888888876543 334566777866 34664
No 178
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.32 E-value=0.00075 Score=50.24 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc---HhHHHhcCccccCceEEEeCCC
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.-++.|+.+||++|++....|++. ++.+-.+|++++ ..+.+..+...+|.+++ +|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 33446779999999999999988754 577777787755 34555678899999853 665
No 179
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.29 E-value=0.0026 Score=55.76 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCce
Q 022923 97 LQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 97 ~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~ 176 (290)
.-+.|.+|+-.+-..++...+.+-.|||+.|...-+-|+-+...++.++.+|++++|+++=.+.. ...|-=...||+
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl 165 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTL 165 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeE
Confidence 34578888776444444445667789999999999999999999999999999999999875543 234666889999
Q ss_pred EEEeCCC--ceeeee-cCC--ccCHHHHHHHHHhhC
Q 022923 177 RFYRGAH--GRVCSF-SCT--NATIKKFKDALAKHT 207 (290)
Q Consensus 177 ~~~~~G~--~~v~~~-~~g--~~~~~~l~~~L~k~~ 207 (290)
++|..|. +.+++. ..| ..+.+++..+|-+.-
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 9998886 222222 223 367888988887654
No 180
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.29 E-value=0.0018 Score=48.74 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=53.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH---HhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 199 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~---~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l 199 (290)
+..|..+||++|+.....|++ .++.|-.+|++++++.. +..+...+|++++ ++. .+ .+.+.++|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~-~~-----~Gf~~~~l 69 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL-SW-----SGFRPDMI 69 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE-EE-----ecCCHHHH
Confidence 567889999999999988865 36889899998777543 3457789999865 432 22 46778888
Q ss_pred HHHHHhhC
Q 022923 200 KDALAKHT 207 (290)
Q Consensus 200 ~~~L~k~~ 207 (290)
.+.+..+.
T Consensus 70 ~~~~~~~~ 77 (81)
T PRK10329 70 NRLHPAPH 77 (81)
T ss_pred HHHHHhhh
Confidence 88877654
No 181
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.24 E-value=0.0072 Score=49.08 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=68.3
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHH-H---HCCCcEEEEEecc-----ccHhHHHhcCc--cccCce
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-E---MNPDVQFLQVNYE-----EHKSMCYSLNV--HVLPFF 176 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la-~---~~~~v~~~~Vd~d-----~~~~l~~~~~I--~~~PT~ 176 (290)
-+|+..+ .+.+.++|.|=...= --.-...+.+++ + .-+++-++.|.+. +|.+|+++|+| ..+|.+
T Consensus 12 ~tFdKvi--~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 12 LTFDKVI--PKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp THHHHHG--GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred eehhhee--ccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 3788888 467999999975442 222334566666 3 3467899999875 58899999999 679999
Q ss_pred EEEeCCCceeeeec-CCccCHHHHHHHHHhhCC
Q 022923 177 RFYRGAHGRVCSFS-CTNATIKKFKDALAKHTP 208 (290)
Q Consensus 177 ~~~~~G~~~v~~~~-~g~~~~~~l~~~L~k~~~ 208 (290)
.+|..|....+.+. .+..+.++|+.|+.++.+
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99997766777772 267899999999999864
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.24 E-value=0.0011 Score=49.74 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=59.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
++.|..+.|+-|......+.++.... .+.+-.||+++++++..+|+. .+|.+.+-..++........+..+.+++.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999876554 499999999999999999995 7998666421111111222367899999988
Q ss_pred HH
Q 022923 203 LA 204 (290)
Q Consensus 203 L~ 204 (290)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 183
>PHA03050 glutaredoxin; Provisional
Probab=97.14 E-value=0.0012 Score=52.50 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=41.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc-cc----HhHHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EH----KSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~----~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|..+||++|++....|++..-.++.+..+.||-. .. ..+.+..|.+.+|++++ +|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 6679999999999999999887554444555555421 12 34566678889999833 665
No 184
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.05 E-value=0.0014 Score=48.45 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=39.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|+.+||++|++....|++. ++.+-.+|++.+++. .+..+...+|+++ .+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 3568899999999999999864 466677777766544 3445788899973 3665
No 185
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.05 E-value=0.0018 Score=50.55 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=37.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh-------HHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~-------l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|..+||++|++....|.+. ++.+..+|+|++++ +.+..+...+|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 5568999999999999888766 35455566654422 3344567889987 44665
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.93 E-value=0.0031 Score=45.73 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=39.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHH----HhcCcc-ccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVH-VLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~----~~~~I~-~~PT~~~~~~G~ 183 (290)
++.|..+||++|+.....|++. ++.+..+|++.+++.. +.++.. .+|+++ .+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 4678899999999999888764 6777888888765443 345666 899763 3665
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.92 E-value=0.0032 Score=45.85 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=41.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|+.+||+.|++....|++. ++.+-.+|+++++. +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5568899999999999888874 67788888887654 555567788888833 665
No 188
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.84 E-value=0.014 Score=46.61 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=69.0
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH---CCC-cEEEEEeccccHhHHHhcCccc--cCceEEEeC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRG 181 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~---~~~-v~~~~Vd~d~~~~l~~~~~I~~--~PT~~~~~~ 181 (290)
++..... ..+.+..+.|| --..-..+...+.+++++ +.+ +.|+.+|.++.....+.||+.. +|.+.+...
T Consensus 7 e~~~~~~--~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 7 ENAEELT--EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred ccHHHHh--cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcc
Confidence 3444444 34555555566 223346788899999999 854 9999999998877999999997 999999865
Q ss_pred CCceeeeecCCccCHHHHHHHHHhhCC
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
..........+..+.+.|.+|+++++.
T Consensus 83 ~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 83 RHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred hhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 431222212356789999999998863
No 189
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.84 E-value=0.0048 Score=47.17 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEeCCC
Q 022923 119 DKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 119 ~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~~G~ 183 (290)
+.+|+|+-.. +||++|++....|.+. ++.|..+|++++.++ .+..+-..+|.+ |.+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566665443 7999999999888876 367777787766544 444577889987 33665
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.83 E-value=0.0037 Score=46.48 Aligned_cols=58 Identities=22% Similarity=0.423 Sum_probs=43.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec--cc------------------------------cHhHHHhcC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY--EE------------------------------HKSMCYSLN 169 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~--d~------------------------------~~~l~~~~~ 169 (290)
++.|+.+.|++|..+.+.+.++.+.++ ++.+....+ .. +..++.+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999975543 455554433 11 123567889
Q ss_pred ccccCceEEEe
Q 022923 170 VHVLPFFRFYR 180 (290)
Q Consensus 170 I~~~PT~~~~~ 180 (290)
|.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999874
No 191
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.83 E-value=0.0069 Score=47.12 Aligned_cols=65 Identities=20% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCeEEEEEe----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhH----HHhcCccccCceEEEe
Q 022923 109 DLVESLWHAGDKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYR 180 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~Fy----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~I~~~PT~~~~~ 180 (290)
...+.+ .+..|+|+-. .+||++|++....|.+. ++.|..+|+++++++ .+..+...+|.++ .
T Consensus 4 ~v~~~i---~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i 73 (97)
T TIGR00365 4 RIKEQI---KENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--V 73 (97)
T ss_pred HHHHHh---ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--E
Confidence 344444 3455666554 38999999999988876 567778888766543 3445666778763 3
Q ss_pred CCC
Q 022923 181 GAH 183 (290)
Q Consensus 181 ~G~ 183 (290)
+|+
T Consensus 74 ~g~ 76 (97)
T TIGR00365 74 KGE 76 (97)
T ss_pred CCE
Confidence 665
No 192
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.80 E-value=0.0048 Score=54.35 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCChHHHHHHHHH---HHHHHHCC-CcEEEEE
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQV 156 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l---~~la~~~~-~v~~~~V 156 (290)
+++.||.|+.-.|+||+.+.+.+ ..+.+.++ ++.|..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 56779999999999999999876 77788775 4555443
No 193
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.77 E-value=0.018 Score=46.03 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccc----cCceEEEeCCCceeeeecCCcc-CHHHHHHHH
Q 022923 131 CGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNA-TIKKFKDAL 203 (290)
Q Consensus 131 C~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~----~PT~~~~~~G~~~v~~~~~g~~-~~~~l~~~L 203 (290)
-..-..+...+.+++++++ .+.|+.+|.++...+.+.||+.. +|+++++..+. .-.. ..+.. +.+.|.+|+
T Consensus 30 ~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~-~~~~~~t~e~i~~F~ 107 (111)
T cd03073 30 PKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYV-MEEEFSDVDALEEFL 107 (111)
T ss_pred hhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccC-CCcccCCHHHHHHHH
Confidence 3455678889999999997 59999999998888899999985 99999986432 1111 22556 889999999
Q ss_pred Hhh
Q 022923 204 AKH 206 (290)
Q Consensus 204 ~k~ 206 (290)
++.
T Consensus 108 ~~f 110 (111)
T cd03073 108 EDF 110 (111)
T ss_pred HHh
Confidence 875
No 194
>PRK10824 glutaredoxin-4; Provisional
Probab=96.66 E-value=0.0058 Score=49.27 Aligned_cols=67 Identities=12% Similarity=0.267 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhc-CccccCce-EEEeCC
Q 022923 109 DLVESLWHAGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL-NVHVLPFF-RFYRGA 182 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~-~I~~~PT~-~~~~~G 182 (290)
..++.+ .+.+|+|+--. |||++|++....|.++ ++.+..+|++++.++.+.+ .+.+.||+ .+|-+|
T Consensus 7 ~v~~~I---~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 7 KIQRQI---AENPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred HHHHHH---hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 344455 34556665443 6999999999988876 3555556776665544332 22345553 345577
Q ss_pred C
Q 022923 183 H 183 (290)
Q Consensus 183 ~ 183 (290)
+
T Consensus 79 ~ 79 (115)
T PRK10824 79 E 79 (115)
T ss_pred E
Confidence 6
No 195
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.63 E-value=0.054 Score=42.12 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=67.8
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+..|++.+++++.+.. .+..++|-|+..--. .....+.+++..+ .++.|+... +.++...+++. .|.+++|
T Consensus 2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 4678888889888831 455666666655444 3556788888888 678886544 45677888775 7999999
Q ss_pred eCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 180 RGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 180 ~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
++.......|..|..+.+.|.+||..+
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 763323344534677999999999764
No 196
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.61 E-value=0.0076 Score=43.68 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=40.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh---HHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|..+||+.|.+....|.+. ++.+..+|++++.. +.+..+...+|.+ |.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~ 59 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE
Confidence 5678999999999998888753 57777778776542 3344688899997 33665
No 197
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.015 Score=54.26 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=80.1
Q ss_pred CCCeeEeCCHhHHHHHHHh-cCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCC---------CcEEEEEeccccHh
Q 022923 98 QPNMREVASAQDLVESLWH-AGDKLVVVDFFS----PGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEHKS 163 (290)
Q Consensus 98 ~~~v~~I~s~~~f~~~l~~-~~~k~vlV~FyA----~WC~~Ck~~~p~l~~la~~~~---------~v~~~~Vd~d~~~~ 163 (290)
...++.+++ +.|...+.. ..+-.++|.|.| ..|.-|+.....+.-++..+. .+-|..||.|+.++
T Consensus 39 ~~~VI~~n~-d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRMND-DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEecC-cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 345666666 467777752 234457777876 479999999999998888641 27799999999999
Q ss_pred HHHhcCccccCceEEEeCCCcee------eeecCCccCHHHHHHHHHhhCC
Q 022923 164 MCYSLNVHVLPFFRFYRGAHGRV------CSFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 164 l~~~~~I~~~PT~~~~~~G~~~v------~~~~~g~~~~~~l~~~L~k~~~ 208 (290)
+.++++++.+|++++|...++.. .... -+..++++.+|+++...
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~-~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQD-LGFEAEQIAQFVADRTK 167 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhh-cchhHHHHHHHHHHhhh
Confidence 99999999999999996554222 1122 23449999999998763
No 198
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.50 E-value=0.022 Score=48.01 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCC-CcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCc-cCHHHHHHHHHhhC
Q 022923 137 LHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDALAKHT 207 (290)
Q Consensus 137 ~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~-~~~~~l~~~L~k~~ 207 (290)
....+.++++.+. ++.|+.++ +.+++++++|.. |++++|+++.++...|. |. .+.++|.+||.++.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~-~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYD-GDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEES-SSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecc-cccCCHHHHHHHHHHhc
Confidence 4567888888886 68999887 677999999999 99999999765667776 44 79999999999986
No 199
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.49 E-value=0.053 Score=42.45 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.6
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+.+|++.+++.+.+. .++.++|-|+..--. .....+.+++..+ .++.|+... +..+.+.+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 456788888888773 466677766665443 4566788888888 578887654 4567888988 7888888
Q ss_pred eC------CCceeeeecCCccCHHHHHHHHHhh
Q 022923 180 RG------AHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 180 ~~------G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+. -......|. |..+.+.|.+||..+
T Consensus 72 ~p~~~~~k~de~~~~y~-g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFD-GDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCccccccc-CcCCHHHHHHHHHhh
Confidence 43 111223344 667889999999865
No 200
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.40 E-value=0.041 Score=43.27 Aligned_cols=100 Identities=14% Similarity=0.256 Sum_probs=71.9
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEeccc--cHhHHHhcCcc----cc
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE--HKSMCYSLNVH----VL 173 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~--~~~l~~~~~I~----~~ 173 (290)
+..|.+..+|..++ .....|+|.|..+--..-..+ ..+.++++... .-+++.|||.+ ...||+++.|. --
T Consensus 3 ie~i~d~KdfKKLL--RTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 3 IEDISDHKDFKKLL--RTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccccchHHHHHHH--hhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 34678889999999 456668887776654444443 46777777764 47999999985 78899999999 55
Q ss_pred Cc-eEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923 174 PF-FRFYRGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 174 PT-~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
|. +.=|+||. ...+|. -..+...+..|+..
T Consensus 80 ~~~LkHYKdG~-fHkdYd-R~~t~kSmv~FlrD 110 (112)
T cd03067 80 PVELKHYKDGD-FHTEYN-RQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhcccCCC-cccccc-chhhHHHHHHHhhC
Confidence 65 55778887 444554 45678888888764
No 201
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.18 E-value=0.0067 Score=48.28 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHH---HHHHHHHHHHHHCCC-cEEEEEeccccHhHHHhcCccccCce
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCK---ALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 176 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck---~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~I~~~PT~ 176 (290)
+..++ .+++++.+. .+...++ |++..|..|. ...=.+-+|.+.+++ +..+.|+-+....|..+|++..+|++
T Consensus 11 ~~~vd-~~~ld~~l~--~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLA--APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp EEEE--CCCHHHHHH--CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred Ceeec-hhhHHHHHh--CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 44444 456777774 3444555 5554554444 444477788888876 56667776678899999999999999
Q ss_pred EEEeCCC
Q 022923 177 RFYRGAH 183 (290)
Q Consensus 177 ~~~~~G~ 183 (290)
+||++|+
T Consensus 87 vf~R~g~ 93 (107)
T PF07449_consen 87 VFFRDGR 93 (107)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 9999997
No 202
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.016 Score=43.52 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=44.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-----hHHHhc-CccccCceEEEeCCCceeeeecCCccCH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFRFYRGAHGRVCSFSCTNATI 196 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~-~I~~~PT~~~~~~G~~~v~~~~~g~~~~ 196 (290)
++.|--++|++|++....|.+. ++.|..+|++.+. +..++. +.+.+|.+++ +|+ . .+|..+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~--~---igg~~d~ 70 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK--H---VGGCDDL 70 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE--E---EeCcccH
Confidence 5678899999999999888844 5667777766544 344455 7899998766 554 1 2244555
Q ss_pred HHHH
Q 022923 197 KKFK 200 (290)
Q Consensus 197 ~~l~ 200 (290)
+++.
T Consensus 71 ~~~~ 74 (80)
T COG0695 71 DALE 74 (80)
T ss_pred HHHH
Confidence 5554
No 203
>PRK10638 glutaredoxin 3; Provisional
Probab=96.11 E-value=0.018 Score=42.99 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=39.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I~~~PT~~~~~~G~ 183 (290)
++.|..+||++|++....+++. ++.+..+|++++.+ +.+..+...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5567889999999999888865 56677778876653 345557788997733 664
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=95.46 E-value=0.064 Score=47.51 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCeEEEEEe----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHh----cCccccCceEEEeCCC
Q 022923 119 DKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH 183 (290)
Q Consensus 119 ~k~vlV~Fy----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~----~~I~~~PT~~~~~~G~ 183 (290)
.++|+|+=- .|||+.|+++...|.+. ++.|..+|++++.++.+. .+-..+|.+. -+|+
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~ 177 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE 177 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 445555433 37999999998888865 577788888876655433 3444555544 3665
No 205
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.38 E-value=0.093 Score=51.23 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=41.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh---HHHh---------cCccccCceEEEeCCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYS---------LNVHVLPFFRFYRGAH 183 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~---------~~I~~~PT~~~~~~G~ 183 (290)
|+.|..+||++|++....|.+. ++.|-.||+++++. +.++ .|.+.+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6679999999999999888875 68888888887663 2222 36788999855 554
No 206
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.30 E-value=0.33 Score=43.86 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=43.3
Q ss_pred CeeEeCCHh--HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-cEEEEEec
Q 022923 100 NMREVASAQ--DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY 158 (290)
Q Consensus 100 ~v~~I~s~~--~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~ 158 (290)
.++.+.... .+.+.. .+++|.||+|.+-.|++-..-...+++++++|.+ +.|+.|-+
T Consensus 83 ~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred ceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 455554432 344444 5799999999999999999999999999999987 45665543
No 207
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.29 Score=38.76 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH-hHHH----hcCccccCceEEEeCCC
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCY----SLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-~l~~----~~~I~~~PT~~~~~~G~ 183 (290)
.+.+.+ ...+ +|.|.-+||+.|+.+...|.++ -.+..++.+|-+++. +|-+ --+.+.+|.+++ +|+
T Consensus 6 ~v~~~i---~~~~-VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 6 KVRKMI---SENP-VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHHh---hcCC-EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 345555 2334 4459999999999988777772 224677777765443 3322 234556776544 675
No 208
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.96 E-value=0.028 Score=52.39 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEe-ccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd-~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
...+.+..++..+|-+.||++||+.-+...|.++-....|..+....|+ ...-+++..+|++++.|++.+...-- ..
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~ 143 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PA 143 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecccc--ch
Confidence 3344443445678999999999999999999999888888765554443 12345678899999999999884432 33
Q ss_pred eecCCccCHHHHHHHHHhhCC
Q 022923 188 SFSCTNATIKKFKDALAKHTP 208 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~~ 208 (290)
.+ .|.++...++++..+.++
T Consensus 144 ~~-~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 144 SY-RGERDLASLVNFYTEITP 163 (319)
T ss_pred hh-cccccHHHHHHHHHhhcc
Confidence 33 388999999999999875
No 209
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.90 E-value=0.11 Score=43.61 Aligned_cols=41 Identities=34% Similarity=0.602 Sum_probs=33.9
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CcEEEEEec
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNY 158 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~ 158 (290)
..++.|+.|+...|++|+.+.+.+..+.++++ ++.|..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 46889999999999999999999999999885 355554443
No 210
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.89 E-value=1.6 Score=34.28 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=62.1
Q ss_pred eeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 101 v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+.+|.+.+++++.+.. .++.++|-|+..--+ .....+.+++..+ .++.|+... +..+.+++++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 4678888889888743 225666666655433 4566788888888 678886644 45777888876 5778888
Q ss_pred eCCC------ceeeeecCCc-cCHHH-HHHHHHhh
Q 022923 180 RGAH------GRVCSFSCTN-ATIKK-FKDALAKH 206 (290)
Q Consensus 180 ~~G~------~~v~~~~~g~-~~~~~-l~~~L~k~ 206 (290)
+... .....|. |. .+.++ |.+||.++
T Consensus 74 rp~~~~~k~e~~~~~~~-~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLN-KKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeee-ccccchHHHHHHHHhcC
Confidence 4433 1223333 33 34444 99998764
No 211
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.87 E-value=0.12 Score=43.53 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=37.2
Q ss_pred CCeEEEE-EeCCCChHHHHH-HHHHHHHHHHCC--Cc-EEEEEeccc---cHhHHHhcCc
Q 022923 119 DKLVVVD-FFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE---HKSMCYSLNV 170 (290)
Q Consensus 119 ~k~vlV~-FyA~WC~~Ck~~-~p~l~~la~~~~--~v-~~~~Vd~d~---~~~l~~~~~I 170 (290)
+++++|+ |.+.||+.|... .+.+.+..+++. ++ .++.|..|. +...++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 4445554 459999999998 999988888774 46 588887764 4445666665
No 212
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=93.62 E-value=0.21 Score=42.98 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.6
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCC
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPD 150 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~ 150 (290)
+|.-|.|+.|-.+.|.|.++..+|++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999875
No 213
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.26 Score=41.93 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEecc---------------------ccHhHHHhcCccc
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV 172 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d---------------------~~~~l~~~~~I~~ 172 (290)
.+++||+||| .++++.|-...-.|.+...++. ++.++.|..| .+..+++.|+|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 5779999999 8899999998888888777764 4777777654 3456788888754
No 214
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.68 E-value=2.8 Score=32.45 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=53.2
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+++.+.+..-.+...++.|..+. ..|..+...++++++.-+.+.+-..+.++ ..|++.+.++|+..-+
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 44555554334444455555555 99999999999999987777665433221 4799999877742123
Q ss_pred eecCCccCHHHHHHHHHh
Q 022923 188 SFSCTNATIKKFKDALAK 205 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k 205 (290)
.|. |-..=.+|..+|..
T Consensus 76 rF~-GiP~GhEf~Slila 92 (94)
T cd02974 76 RFA-GIPMGHEFTSLVLA 92 (94)
T ss_pred EEE-ecCCchhHHHHHHH
Confidence 444 45555566666543
No 215
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.28 Score=50.40 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=54.8
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHH-HH--HHHHHC-CCcEEEEEeccccHhHHHhcC--------ccccCc
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCYSLN--------VHVLPF 175 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~-l~--~la~~~-~~v~~~~Vd~d~~~~l~~~~~--------I~~~PT 175 (290)
+-|...- ..+|||+|....+||..|..|... ++ ++++-. .++.-++||-++-+++-+.|. --++|-
T Consensus 34 eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 34 EAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 5666655 469999999999999999999763 32 555543 458999999998887766553 558998
Q ss_pred eEEEe-CCC
Q 022923 176 FRFYR-GAH 183 (290)
Q Consensus 176 ~~~~~-~G~ 183 (290)
-+|.. +|+
T Consensus 112 tVfLTPd~k 120 (667)
T COG1331 112 TVFLTPDGK 120 (667)
T ss_pred eEEECCCCc
Confidence 66664 554
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.87 Score=40.60 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.7
Q ss_pred cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+..++++++|.++||+++- |+ .+ .|..+.+++.+.|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~--~~-~~----~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVN--GK-LV----PGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEEC--Ce-ee----cCCCCHHHHHHHHHHh
Confidence 3456778899999999885 32 12 2566688888888764
No 217
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.42 E-value=1.8 Score=43.33 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=65.6
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+++.+.+.. =.++|-+.++.+-|..|..+...++++++.-+.+++-..+.+ ...|+|.+.++|+..-.
T Consensus 8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLEL-LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHh-CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 455555543 355666666666899999999999999998877776443311 34799999987753234
Q ss_pred eecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923 188 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA 229 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~ 229 (290)
.|. |-..-.+|..||...... -++...++++..+.+..
T Consensus 76 ~f~-g~P~g~Ef~s~i~~i~~~---~~~~~~l~~~~~~~i~~ 113 (517)
T PRK15317 76 RFA-GIPMGHEFTSLVLALLQV---GGHPPKLDQEVIEQIKA 113 (517)
T ss_pred EEE-ecCccHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHh
Confidence 444 555556666666655422 12334555555444443
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.58 E-value=4.1 Score=40.78 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=65.6
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+++.+.+.. =.++|-+.++.+-|..|..+...++++++.-+.+++...+.+. ...|++.++++|+..-.
T Consensus 8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLAS-LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 445555543 2455655555557999999999999999988877775444221 35699999877763224
Q ss_pred eecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHh
Q 022923 188 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA 229 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~ 229 (290)
.|. |-..-.+|..||...... -++...++++..+.+..
T Consensus 77 ~f~-g~P~g~Ef~s~i~~i~~~---~~~~~~l~~~~~~~~~~ 114 (515)
T TIGR03140 77 RFA-GIPGGHEFTSLVLAILQV---GGHGPKLDEGIIDRIRR 114 (515)
T ss_pred EEE-ecCCcHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHh
Confidence 444 555556666666655422 12334555555544443
No 219
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.96 E-value=1.5 Score=32.32 Aligned_cols=57 Identities=4% Similarity=-0.036 Sum_probs=45.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+..|-+..-+..+.....+.++.+++. .+.+=-||+.+++++++.++|-++||++-.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 444445555888888888888887763 488889999999999999999999997644
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=89.78 E-value=3.8 Score=29.40 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=42.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 202 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~ 202 (290)
+..|+.+.|+.|++..-.+.+..-. +.+..+|.....++ +.-+...+|+++.-..|.+.+. .+...+.++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~y 71 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIST 71 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHHH
Confidence 3457789999999998666655222 23333333222333 3345568998875422221221 245677788
Q ss_pred HHhhC
Q 022923 203 LAKHT 207 (290)
Q Consensus 203 L~k~~ 207 (290)
|++++
T Consensus 72 L~~~~ 76 (77)
T cd03040 72 LKTYL 76 (77)
T ss_pred HHHHc
Confidence 87765
No 221
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.38 E-value=0.52 Score=36.70 Aligned_cols=78 Identities=9% Similarity=0.124 Sum_probs=42.4
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeee--c-CCccCH
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSF--S-CTNATI 196 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~--~-~g~~~~ 196 (290)
..|+.++|+.|++....+++. ++.|-.+|+.++ .++.+-++-.+.+.--++.......... . ....+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~ 76 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSD 76 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCH
Confidence 468899999999998777764 566666776542 2333333333333333332221000000 0 134566
Q ss_pred HHHHHHHHhh
Q 022923 197 KKFKDALAKH 206 (290)
Q Consensus 197 ~~l~~~L~k~ 206 (290)
+++.++|.++
T Consensus 77 ~e~~~~l~~~ 86 (105)
T cd02977 77 EEALELMAEH 86 (105)
T ss_pred HHHHHHHHhC
Confidence 6777776655
No 222
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.31 E-value=1.3 Score=37.29 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=36.2
Q ss_pred EEEeCC------CChHHHHHHHHHHHHHHHCCCcEEEEEeccccHh----HHHhcCc----cccCceEEEeCCC
Q 022923 124 VDFFSP------GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNV----HVLPFFRFYRGAH 183 (290)
Q Consensus 124 V~FyA~------WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~I----~~~PT~~~~~~G~ 183 (290)
|.|.++ +|++|+.....|+.+ +|.|-.+|++.+.+ |.+.++- ..+|.+++ +|+
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 445566 899999999888876 58888899987654 3344443 45665543 564
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.57 E-value=0.58 Score=37.07 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=43.6
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcCccccCceEEEeCCCceeeeecC----CccC
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYRGAHGRVCSFSC----TNAT 195 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~I~~~PT~~~~~~G~~~v~~~~~----g~~~ 195 (290)
..|+.++|+.|++....|++- ++.|-.+|+.+++ ++.+-++-.+.|..-+++........... ...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~s 76 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLS 76 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccCC
Confidence 458899999999988777763 5777777775432 33333334445655555333211111110 1235
Q ss_pred HHHHHHHHHhh
Q 022923 196 IKKFKDALAKH 206 (290)
Q Consensus 196 ~~~l~~~L~k~ 206 (290)
.+++.+.|.++
T Consensus 77 ~~e~~~~l~~~ 87 (111)
T cd03036 77 EEEALELLSSD 87 (111)
T ss_pred HHHHHHHHHhC
Confidence 56666666665
No 224
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.53 E-value=7 Score=38.27 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=61.2
Q ss_pred cCCCeEEEEEeCCCChHHHHHH--HHHHHHHHHC--CCcEEEEEeccc--cHhHHHhcCccccCceEEEeCCCceeeeec
Q 022923 117 AGDKLVVVDFFSPGCGGCKALH--PKICQLAEMN--PDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 190 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~--p~l~~la~~~--~~v~~~~Vd~d~--~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~ 190 (290)
..++-+||.|-+.-.....+|. -.++...... ..+..++|+... ...++.-|.+-.+|.++|+...+ ......
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sG-tpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSG-TPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCC-ceeEEe
Confidence 3566778878877777777776 2333333222 346667776543 44667789999999998885443 455555
Q ss_pred CCccCHHHHHHHHHhhC
Q 022923 191 CTNATIKKFKDALAKHT 207 (290)
Q Consensus 191 ~g~~~~~~l~~~L~k~~ 207 (290)
.|....++|..-|++..
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 57788999999998875
No 225
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.55 E-value=4.5 Score=32.25 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=38.4
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeC
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
+.+.+.+......-+.+-|-.---+.=+.....+.++..+.+.. .++.-++.+.++|+|+.+|++++-++
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 34444444222223333344333333333344444554444333 23333588999999999999999987
No 226
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.43 E-value=2.3 Score=32.54 Aligned_cols=60 Identities=5% Similarity=0.011 Sum_probs=48.9
Q ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHHHC-C-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 120 KLVVVDFFSPGCGGCKALHPKICQLAEMN-P-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
..++=.|.|.--+..++....+.++.+.+ + .+.+=-||+.+++++++.++|-++||++-.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 34555677888888888888888887765 2 388888999999999999999999997644
No 227
>PRK09301 circadian clock protein KaiB; Provisional
Probab=87.20 E-value=2.3 Score=33.63 Aligned_cols=61 Identities=3% Similarity=0.008 Sum_probs=50.8
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHC-C-CcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMN-P-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~-~-~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
...++=.|.+..-+..++....+.++.+.+ + .+.+=-||+.+++++++.++|-++||++-.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~ 67 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI 67 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence 456677788888889999888888887765 2 388888999999999999999999997644
No 228
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=3.9 Score=39.46 Aligned_cols=92 Identities=14% Similarity=0.299 Sum_probs=72.5
Q ss_pred hHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceee
Q 022923 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~ 187 (290)
+++-+.+..-.+..-|=-|++-.|..|-..-..++-++--++++....||..-.++-.+.-+|.++||+++ ||+
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe---- 178 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE---- 178 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cch----
Confidence 45555555556778888899999999999999999888889999999999876666677789999999755 776
Q ss_pred eecCCccCHHHHHHHHHh
Q 022923 188 SFSCTNATIKKFKDALAK 205 (290)
Q Consensus 188 ~~~~g~~~~~~l~~~L~k 205 (290)
.|..|..+.+++...|..
T Consensus 179 ~fg~GRmtleeilaki~~ 196 (520)
T COG3634 179 EFGQGRMTLEEILAKIDT 196 (520)
T ss_pred hhcccceeHHHHHHHhcC
Confidence 234467788888777764
No 229
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=85.41 E-value=5.5 Score=28.85 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=40.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc----HhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHH
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 199 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l 199 (290)
..|+.++|+.|++..-.+.+. ++.+-.+|++.. .++.+.-.-..+|+++.- +|. .. -.+...+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~-~~------l~es~~I 69 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTG-VQ------MFESADI 69 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CCC-eE------EEcHHHH
Confidence 456778999999988777766 344444554432 234333455678987532 222 12 2335667
Q ss_pred HHHHHhh
Q 022923 200 KDALAKH 206 (290)
Q Consensus 200 ~~~L~k~ 206 (290)
.++|++.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 7777653
No 230
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=83.23 E-value=4.1 Score=33.49 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccHhHHHhcCccccCceEEEeCCC----------ceeeeecCCccCHHHHHHHHHhhC
Q 022923 160 EHKSMCYSLNVHVLPFFRFYRGAH----------GRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 160 ~~~~l~~~~~I~~~PT~~~~~~G~----------~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
-++.+.++|+|+.+|+|++.+++. +.. ....|..+.+.-.+.+.+..
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~-d~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDY-DVVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCe-eEEEecccHHHHHHHHHHhC
Confidence 358999999999999999998773 112 22347888888777777653
No 231
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=82.43 E-value=4.6 Score=28.64 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=35.0
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-cHhHHHhcCccccCceEE
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~I~~~PT~~~ 178 (290)
+.|+.+||+.|++..-.+++..- ++.+..+|... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 35788999999998776665532 35566666543 345656566778999853
No 232
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=82.04 E-value=3.8 Score=28.98 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=29.1
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceE
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~ 177 (290)
.|+.++|++|++..-.+....-. +....+|.++.....+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 46788999999988776655322 333344433333333344445678874
No 233
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.47 E-value=2.7 Score=33.94 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHHHC
Q 022923 120 KLVVVDFFSPGCGGCKALHPKICQLAEMN 148 (290)
Q Consensus 120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~ 148 (290)
|.++|.|.-|.|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998888776
No 234
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.11 E-value=3.6 Score=34.32 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=50.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccc----cCceEEEeCCCceeeeecCCccCH
Q 022923 121 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNATI 196 (290)
Q Consensus 121 ~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~----~PT~~~~~~G~~~v~~~~~g~~~~ 196 (290)
.-++.|+.|.|+-|......++. .++.+-.+..++...+-++|+|.. ==|. ++ +|. . ..|-...
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~-VI-~Gy--~---vEGHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA-VI-NGY--Y---VEGHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEE-EE-cCE--E---EeccCCH
Confidence 34778999999999998877763 368888888888888888887752 1122 22 554 2 2255667
Q ss_pred HHHHHHHHh
Q 022923 197 KKFKDALAK 205 (290)
Q Consensus 197 ~~l~~~L~k 205 (290)
+.+..++++
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 777777654
No 235
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.01 E-value=3.7 Score=36.95 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=32.6
Q ss_pred hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 163 ~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
..++++||+++|||+| +|+ .... |..+.+.|.+.|++.++.
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~---~~V~-Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK---YAVS-GAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE--cCc---Eeec-CCCCHHHHHHHHHHHHhc
Confidence 4678999999999999 554 1223 789999999999998754
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=79.91 E-value=3.8 Score=32.57 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=26.4
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~ 162 (290)
..|+.++|+.|++....+++- ++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 358899999999998877763 6777778876543
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.11 E-value=2.7 Score=33.01 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=24.2
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 160 (290)
..|+.++|+.|++....+++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 568999999999988777654 56666666654
No 238
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.67 E-value=3.9 Score=33.43 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=25.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~ 162 (290)
+..|+.++|+.|++....+++- ++.|-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4568899999999988776654 5667777765443
No 239
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=77.83 E-value=7.2 Score=35.65 Aligned_cols=58 Identities=14% Similarity=0.022 Sum_probs=43.3
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcC-ccccCceEEEeC
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFRFYRG 181 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~-I~~~PT~~~~~~ 181 (290)
..+|+.+++..+.||+.|...+=.+-..-.+|+++.+....-+. .+ --.+|||+|...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEEecC
Confidence 47999999999999999999998888888889887333222111 22 247899888744
No 240
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=77.46 E-value=23 Score=25.30 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=48.8
Q ss_pred EeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 204 (290)
Q Consensus 126 FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~ 204 (290)
|+.++|+.|++..=.++...- ++.+..++..+ ...+.+...-..+|++. .+|. +. .+-..+.++|+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~--~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE--VL------TDSAAIIEYLE 68 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE--EE------ESHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCE--EE------eCHHHHHHHHH
Confidence 678999999998866665522 25566666544 35666677778899997 4554 22 35678889998
Q ss_pred hhCCC
Q 022923 205 KHTPD 209 (290)
Q Consensus 205 k~~~~ 209 (290)
++.+.
T Consensus 69 ~~~~~ 73 (75)
T PF13417_consen 69 ERYPG 73 (75)
T ss_dssp HHSTS
T ss_pred HHcCC
Confidence 87654
No 241
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=77.27 E-value=13 Score=34.17 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCCeEEEEEeCCCCh-HHHHHHHHHHHHHH----HCCCc---EEEEEeccc--------------------------cHh
Q 022923 118 GDKLVVVDFFSPGCG-GCKALHPKICQLAE----MNPDV---QFLQVNYEE--------------------------HKS 163 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~----~~~~v---~~~~Vd~d~--------------------------~~~ 163 (290)
.+|.+++||.-+.|+ -|=.....+.++.+ +.+.. .|+.||-+. -..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 589999999999997 46655554444433 33222 688888521 235
Q ss_pred HHHhcCccccC-------------ceEEE-eCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 164 MCYSLNVHVLP-------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 164 l~~~~~I~~~P-------------T~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+|+.|.|..-. ++++| -|.++..+.+.+-..+.+++.+-|.++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 68888776433 23333 4555568888767789999999988875
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=77.00 E-value=3.4 Score=34.94 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=29.0
Q ss_pred ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 204 (290)
Q Consensus 160 ~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~ 204 (290)
++...+.+++|.++||+++ +|+ ..+. |....+.|.+.|+
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~---~~~~-G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK---YRFF-GADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT---EEEE-SCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE--CCE---EEEE-CCCCHHHHHHHhC
Confidence 3456788999999999999 665 2223 7888888888763
No 243
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.03 E-value=4.6 Score=35.65 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=33.9
Q ss_pred HhHHHhcCccccCceEEEeCCCceeeeecCC--ccCHHHHHHHHHhhC
Q 022923 162 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT--NATIKKFKDALAKHT 207 (290)
Q Consensus 162 ~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g--~~~~~~l~~~L~k~~ 207 (290)
..+++++++.++||+++-+||+ ......| ..+.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~--~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT--MYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc--eEeccCCcccCCcHHHHHHHHHHH
Confidence 4578999999999999999998 3333334 467888888887764
No 244
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.72 E-value=3 Score=28.13 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=32.3
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH--hHHHhcCccccCceEE
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFRF 178 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~--~l~~~~~I~~~PT~~~ 178 (290)
.|+.++|+.|++..-.+....-. +....++.+... ++.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 47788999999888777766322 344445543322 2445566778897754
No 245
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=73.54 E-value=2 Score=32.47 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHHHHC--CCcEEEEEeccccHhHHHhcCccccCceEEE
Q 022923 128 SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (290)
Q Consensus 128 A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~ 179 (290)
+..-+..+.....+..+.+.+ ..+.+--||+.+++++++.++|-++||++-.
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~ 58 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKE 58 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeec
Confidence 334455667777888888764 3489999999999999999999999998643
No 246
>PRK12559 transcriptional regulator Spx; Provisional
Probab=70.05 E-value=7.7 Score=31.72 Aligned_cols=79 Identities=10% Similarity=0.206 Sum_probs=41.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccH----hHHHhcCccccCceEEEeCCCceeeee--cCCccCH
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYRGAHGRVCSF--SCTNATI 196 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~I~~~PT~~~~~~G~~~v~~~--~~g~~~~ 196 (290)
+..|+.++|+.|++....|++- ++.|-.+|+.+++ +|..-+.-.+.+.--++.......... .....+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~ 76 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEELSL 76 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcccCCH
Confidence 4578899999999987666654 5666666665432 333333333334333443222111111 1123455
Q ss_pred HHHHHHHHhh
Q 022923 197 KKFKDALAKH 206 (290)
Q Consensus 197 ~~l~~~L~k~ 206 (290)
+++.+.|.++
T Consensus 77 ~e~i~ll~~~ 86 (131)
T PRK12559 77 NEFYKLIIEH 86 (131)
T ss_pred HHHHHHHHhC
Confidence 6677777665
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=69.78 E-value=7.5 Score=27.11 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc----ccHhHHHhcCccccCceEE
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d----~~~~l~~~~~I~~~PT~~~ 178 (290)
.|+.++|+.|++..-.+....-. +....+|.. ...++.+...-..+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 57788999999998887766322 344455542 2344555556668899865
No 248
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.25 E-value=9.9 Score=30.06 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=25.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 161 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~ 161 (290)
+..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467889999999988777764 566666776543
No 249
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.74 E-value=8.7 Score=32.37 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=29.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEE
Q 022923 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156 (290)
Q Consensus 122 vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~V 156 (290)
.|.+||..-|++|....+.+.++.+.++++.+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~ 35 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR 35 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 37789999999999999999999999966555443
No 250
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=67.56 E-value=19 Score=30.58 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCeEEEEEeCCCC-hHHHHHHHHHHHHHHHC----CCcEEEEEecc
Q 022923 118 GDKLVVVDFFSPGC-GGCKALHPKICQLAEMN----PDVQFLQVNYE 159 (290)
Q Consensus 118 ~~k~vlV~FyA~WC-~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d 159 (290)
.+|+++|+|.-+.| ..|-.+...+.++.+++ .+++++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 68999999999999 58988877777666543 35777777776
No 251
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=64.80 E-value=29 Score=30.61 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCCeEEEEEeCCCCh-HHHHHHHHHHHHHHHCC-----CcEEEEEecc---ccHhHHHhcCc
Q 022923 118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMNP-----DVQFLQVNYE---EHKSMCYSLNV 170 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~-~Ck~~~p~l~~la~~~~-----~v~~~~Vd~d---~~~~l~~~~~I 170 (290)
.+++++|+|.=+.|+ .|-.+...+.++.++.. +++++-|-+| +.++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 689999999988885 79888888877776654 3444444444 23455555554
No 252
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=44 Score=29.43 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=55.1
Q ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc----------------------------cHhHHHh
Q 022923 119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCYS 167 (290)
Q Consensus 119 ~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~~ 167 (290)
+|.+++.|| ++.-.-|-.....+.+...++. ++.++.+.+|. +.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 488888888 7777777777777777766653 46666666542 4568899
Q ss_pred cCccccC---c---eEEE-eCCCceeee-ec-CCccCHHHHHHHHHhh
Q 022923 168 LNVHVLP---F---FRFY-RGAHGRVCS-FS-CTNATIKKFKDALAKH 206 (290)
Q Consensus 168 ~~I~~~P---T---~~~~-~~G~~~v~~-~~-~g~~~~~~l~~~L~k~ 206 (290)
||+..-. + ++++ .+|.-+... +. .-+++.+++...|+..
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9887533 2 2233 333311111 22 2378999988887754
No 253
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=63.94 E-value=24 Score=24.58 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=31.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc-cHhHHHhcCccccCceE
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~I~~~PT~~ 177 (290)
..|+.++|+.|++..-.++...-. +....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457889999999988776555322 3444455433 23444555566888663
No 254
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=63.63 E-value=76 Score=25.48 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=63.5
Q ss_pred cCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhHHH----hcCcc-ccCceEEEeC--CCcee
Q 022923 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRG--AHGRV 186 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~----~~~I~-~~PT~~~~~~--G~~~v 186 (290)
.-+...+|-|--+--+.-.++.+.+.++++++ +++.|+.||-|+.+-+.. .|+|. .-|.+=+..- ....-
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW 97 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVW 97 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEeccccccee
Confidence 34577888899999999999999999999987 469999999998776543 45554 2477655532 22111
Q ss_pred eeecC--CccCHHHHHHHHHhh
Q 022923 187 CSFSC--TNATIKKFKDALAKH 206 (290)
Q Consensus 187 ~~~~~--g~~~~~~l~~~L~k~ 206 (290)
..... ...+.++|.+||+..
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred EecccccccCcHHHHHHHHHhh
Confidence 22211 236789999999865
No 255
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=62.84 E-value=48 Score=31.47 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=63.3
Q ss_pred hhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHH-HHH-HHHHHHCCCcEEEEEeccccHhHHH
Q 022923 89 AQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALH-PKI-CQLAEMNPDVQFLQVNYEEHKSMCY 166 (290)
Q Consensus 89 ~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~-p~l-~~la~~~~~v~~~~Vd~d~~~~l~~ 166 (290)
...|..+.-.|-|.+|+= ++.+++. ..+.|.+|.|+-+--....+.. ..+ .+|..+-..+.++..|++....-..
T Consensus 200 l~~Wi~dKcvpLVREiTF-eN~EELt--EEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~ 276 (375)
T KOG0912|consen 200 LKQWIQDKCVPLVREITF-ENAEELT--EEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLR 276 (375)
T ss_pred HHHHHHhcchhhhhhhhh-ccHHHHh--hcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHH
Confidence 446777777888888865 4555555 4699999999988765444322 222 1333332348899988875332233
Q ss_pred hc----------CccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 167 SL----------NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 167 ~~----------~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.+ .|.++=.+.+|.+++. + ..+-+|++|+..+-
T Consensus 277 HlgKs~~DLPviaIDsF~Hmylfp~f~d-i-------~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 277 HLGKSPDDLPVIAIDSFRHMYLFPDFND-I-------NIPGKLKQFVADLH 319 (375)
T ss_pred HhCCCcccCcEEEeeccceeeecCchhh-h-------cCccHHHHHHHHHh
Confidence 33 3444555556655541 1 12237788877664
No 256
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.79 E-value=16 Score=27.31 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=35.9
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc--------------Hh--HHHhcCccccCceEEEeCCC
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH--------------KS--MCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~--------------~~--l~~~~~I~~~PT~~~~~~G~ 183 (290)
+.|++--|+.|......++.+. +.+-.||+.+. ++ -.+..+--++|.+++= ||+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCc
Confidence 5699999999998877777663 44444454431 11 2455677789998764 665
No 257
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=61.39 E-value=23 Score=24.79 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc----cHhHHHhcCccccCceE
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~I~~~PT~~ 177 (290)
..|+.++|+.|++..-.+.+..- ++....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35789999999988777766532 24555565432 35555555666899985
No 258
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=61.02 E-value=21 Score=32.40 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=37.7
Q ss_pred HhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHH-----CCCcEEEEEecc
Q 022923 115 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-----NPDVQFLQVNYE 159 (290)
Q Consensus 115 ~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~-----~~~v~~~~Vd~d 159 (290)
.+..++.+||-+-..+|..|..-...|+.|..+ +.+|.|+.||--
T Consensus 22 ~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 22 LNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 345789999999999999999998988888754 467999999953
No 259
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=59.71 E-value=1.3e+02 Score=27.04 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCC------ChHHHHHHHHHHHHHHHCC-CcEEEEEeccccHhHHHh----cCccc---------------
Q 022923 119 DKLVVVDFFSPG------CGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS----LNVHV--------------- 172 (290)
Q Consensus 119 ~k~vlV~FyA~W------C~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~----~~I~~--------------- 172 (290)
+++|-|.+|.+- -..=+.+...|++++...+ ++++-.||-+.+++..++ +||..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~ 103 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVT 103 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccccccccee
Confidence 567777777665 3344444555555555556 799999998777666555 88777
Q ss_pred -cCceEEEeCCCceeeeecC---CccCHHHHHHHHHhhC
Q 022923 173 -LPFFRFYRGAHGRVCSFSC---TNATIKKFKDALAKHT 207 (290)
Q Consensus 173 -~PT~~~~~~G~~~v~~~~~---g~~~~~~l~~~L~k~~ 207 (290)
++.+++-.+++.....+.. ...-..+|...|.+..
T Consensus 104 ~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~ 142 (271)
T PF09822_consen 104 VYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVT 142 (271)
T ss_pred ecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHh
Confidence 4555553343323333321 1233556777777665
No 260
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.61 E-value=10 Score=32.37 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=27.9
Q ss_pred ccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 160 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 160 ~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
++...+.++||.++|||++ +|+ .. ..|..+.+.|.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~-~~---~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK-YA---VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe-Ee---ecCCCCHHHHHHHh
Confidence 3456678899999999998 554 12 23778888888765
No 261
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=59.49 E-value=59 Score=28.93 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=31.1
Q ss_pred cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHh
Q 022923 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 205 (290)
Q Consensus 161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k 205 (290)
++.+.++|+|+.+|+|++...+. . +...|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~--y-D~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQG--Y-DIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCC--C-CEEEecccHHHHHHHHHh
Confidence 68899999999999999985543 2 223377877776666665
No 262
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=59.22 E-value=16 Score=29.81 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 160 (290)
+..|+.++|+.|++....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 3467889999999977666543 56666677654
No 263
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=56.16 E-value=11 Score=31.72 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=25.2
Q ss_pred cHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHH
Q 022923 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 161 ~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L 203 (290)
+...+.++||.++|||++ +|+ . ..|....+.+.+.|
T Consensus 156 ~~~~a~~~gi~gvPtfvv--~g~--~---~~G~~~l~~~~~~l 191 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV--DGE--M---FWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHcCCCcCCeEEE--CCe--e---ecccccHHHHHHHh
Confidence 445678899999999988 564 1 12666677666654
No 264
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=55.90 E-value=10 Score=31.50 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=18.1
Q ss_pred ccHhHHHhcCccccCceEEEeCCC
Q 022923 160 EHKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 160 ~~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
.+..++.+++|.++||+++ ||+
T Consensus 131 ~~~~~~~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 131 KAEKLAKKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHHHHHHcCCCCCCeEEE--CCE
Confidence 4556788999999999988 665
No 265
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=54.00 E-value=81 Score=28.23 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCC
Q 022923 130 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 130 WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~ 209 (290)
-|+.|+++.-.+. .+...+.+-.||+..-++..+..-=.+=|-++.| |++ ...+.+.++++|++.++.
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~-d~~--------~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF-DEK--------WVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe-CCc--------eeccHHHHHHHHHHhcCC
Confidence 3777777655554 4545688899999876665544433333444444 443 345678899999998855
No 266
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=53.30 E-value=49 Score=27.35 Aligned_cols=101 Identities=15% Similarity=0.277 Sum_probs=51.2
Q ss_pred CeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHH-HHHHHHHHHHH--CCC---cEEEEEeccccHhHHHhcC---c
Q 022923 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKA-LHPKICQLAEM--NPD---VQFLQVNYEEHKSMCYSLN---V 170 (290)
Q Consensus 100 ~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~-~~p~l~~la~~--~~~---v~~~~Vd~d~~~~l~~~~~---I 170 (290)
-+.++++.++.++.+.+ .....|| +-.+-||---. .+|-....... -+| -.|+..|-+.... ++.|= -
T Consensus 17 Gf~eL~T~e~Vd~~~~~-~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~-aR~yf~~~p 93 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKN-KEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAK-AREYFEPYP 93 (136)
T ss_dssp T-EE--SHHHHHHHHHH---SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHH-HHHTSTTS-
T ss_pred CccccCCHHHHHHHHhC-CCCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHH-HHHhcCCCC
Confidence 47889999999999973 3344444 34566874333 45655443332 233 2344444333322 23332 2
Q ss_pred cccCceEEEeCCCceeeee----cCCccCHHHHHHHHHh
Q 022923 171 HVLPFFRFYRGAHGRVCSF----SCTNATIKKFKDALAK 205 (290)
Q Consensus 171 ~~~PT~~~~~~G~~~v~~~----~~g~~~~~~l~~~L~k 205 (290)
-+-|.+.+|+||+ ++.+ ...+++.+.+.+.|..
T Consensus 94 PSSPS~ALfKdGe--lvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 94 PSSPSIALFKDGE--LVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp --SSEEEEEETTE--EEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCCchheeeeCCE--EEEEeehhhcCCCCHHHHHHHHHH
Confidence 3567899999998 3332 3456777777766654
No 267
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=52.61 E-value=36 Score=25.26 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=33.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-HhHHHhcCccccCceEE
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-~~l~~~~~I~~~PT~~~ 178 (290)
+..|+.+.|+.|++..-.+....- ++.+..+|.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 444678889999988766665422 345556665433 33555556678898874
No 268
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=52.35 E-value=1.3e+02 Score=24.78 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=59.6
Q ss_pred cCCCeEEEEEeCCCCh----HHHHHH--HHHHHHHHHCCCcEEEEEeccccH------------------hHHHhcCccc
Q 022923 117 AGDKLVVVDFFSPGCG----GCKALH--PKICQLAEMNPDVQFLQVNYEEHK------------------SMCYSLNVHV 172 (290)
Q Consensus 117 ~~~k~vlV~FyA~WC~----~Ck~~~--p~l~~la~~~~~v~~~~Vd~d~~~------------------~l~~~~~I~~ 172 (290)
...|+.+||.+.+--. .|+.+. +.+.++-+ .++.+-.-|++... ..++.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 3589999999988774 555542 23333333 35777777876532 1456678999
Q ss_pred cCceEEEeCCC--ceeeeecCCccCHHHHHHHHHhhC
Q 022923 173 LPFFRFYRGAH--GRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 173 ~PT~~~~~~G~--~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
+|.+.++-... -.+.....|..+++++...|....
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99988774322 245555569999999998887643
No 269
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=52.12 E-value=20 Score=27.83 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=37.1
Q ss_pred EeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcCcc--ccCceEE-EeCCC
Q 022923 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH--VLPFFRF-YRGAH 183 (290)
Q Consensus 126 FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~I~--~~PT~~~-~~~G~ 183 (290)
||-.+|+-|......+... .....+.|+.+.-+...++.+.+++. ..-+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7899999999999888877 22345777766434455555666665 3444444 34554
No 270
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=51.64 E-value=2.3e+02 Score=27.37 Aligned_cols=121 Identities=13% Similarity=0.173 Sum_probs=74.4
Q ss_pred hhhhhhhhcCCCCeeEeCCHhHHHHHHHhcCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCcEEEEEeccccHhH
Q 022923 88 KAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSM 164 (290)
Q Consensus 88 ~~~~~~~~~~~~~v~~I~s~~~f~~~l~~~~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l 164 (290)
-..+|.++...|.+..++.. ++.+.-...-+...+|-|--.--+.-..+...+.++++.+ +++.|+.||-|+.+-+
T Consensus 238 e~~~fi~~h~rptlrkl~~~-~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPll 316 (383)
T PF01216_consen 238 ELVEFIEEHKRPTLRKLRPE-DMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL 316 (383)
T ss_dssp HHHHHHHHT-S-SEEE--GG-GHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH
T ss_pred HHHHHHHHhchhHhhhCChh-hhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh
Confidence 35678888888888888775 4444434345677888899899999999999999999986 5699999999987755
Q ss_pred H----HhcCcc-ccCceEEEeCCCceeeeec----CCccCHHHHHHHHHhhCCC
Q 022923 165 C----YSLNVH-VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHTPD 209 (290)
Q Consensus 165 ~----~~~~I~-~~PT~~~~~~G~~~v~~~~----~g~~~~~~l~~~L~k~~~~ 209 (290)
. +.|+|. .-|.+-+..=....-+-+. ....+.+++.+||+..+.+
T Consensus 317 v~yWE~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg 370 (383)
T PF01216_consen 317 VPYWEKTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSG 370 (383)
T ss_dssp HHHHHHHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCT
T ss_pred HHHHHhhcCccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcC
Confidence 4 346665 3488777643331122221 1235889999999999754
No 271
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.44 E-value=21 Score=30.03 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCC
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNP 149 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~ 149 (290)
|.+|+-+.|+.|-...+.+.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668999999999999999999999984
No 272
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.73 E-value=14 Score=31.14 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=19.0
Q ss_pred cHhHHHhcCccccCceEEEeCCC
Q 022923 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (290)
Q Consensus 161 ~~~l~~~~~I~~~PT~~~~~~G~ 183 (290)
+...+.++||.++|||++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 45667889999999999996654
No 273
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=42.55 E-value=1.4e+02 Score=24.30 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccccH----------hHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhh
Q 022923 137 LHPKICQLAEMNPDVQFLQVNYEEHK----------SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 137 ~~p~l~~la~~~~~v~~~~Vd~d~~~----------~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
+...++.|.+ .++.+.+.|...++ .+.++-|...+|-+++ ||+ +... +...+.++|.+|+.-.
T Consensus 29 ~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGe--iv~~-G~YPt~eEl~~~~~i~ 101 (123)
T PF06953_consen 29 FAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGE--IVKT-GRYPTNEELAEWLGIS 101 (123)
T ss_dssp HHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTE--EEEE-SS---HHHHHHHHT--
T ss_pred HHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCE--EEEe-cCCCCHHHHHHHhCCC
Confidence 4445555543 47999999987654 2445668999998766 776 4443 2568999999997643
No 274
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=40.10 E-value=41 Score=28.02 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=38.7
Q ss_pred CccccCceEEE-eCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCC-CCcHHHHHHHHhCCCCccc
Q 022923 169 NVHVLPFFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTK-GLEEKELLALAANKDLSFN 236 (290)
Q Consensus 169 ~I~~~PT~~~~-~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~-~~~~~e~~~l~~~~~~~~~ 236 (290)
+..-.|...+| ++|. -+-+...+.+.+++++.|.+.++. +. .+..++++...+.+..+|.
T Consensus 70 nmtpsPF~R~YlddGr--~vL~Dld~~~r~eI~~hl~K~lGK------tee~lr~Ee~ek~~k~nPAnFG 131 (169)
T KOG4079|consen 70 NMTPSPFARAYLDDGR--EVLFDLDGMKREEIEKHLAKTLGK------TEEVLRREELEKIAKLNPANFG 131 (169)
T ss_pred cCCCChHHHheecCcc--eEEEEcccccHHHHHHHHHHHhCc------cHHHHhHHHHHHHhhcChhhhc
Confidence 33445666655 4554 333444688999999999998754 33 4456666666666666665
No 275
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=39.90 E-value=32 Score=26.16 Aligned_cols=9 Identities=11% Similarity=-0.115 Sum_probs=4.1
Q ss_pred HhHHHHHHH
Q 022923 107 AQDLVESLW 115 (290)
Q Consensus 107 ~~~f~~~l~ 115 (290)
.++..+.+.
T Consensus 64 ~~~~~~~~~ 72 (114)
T cd02967 64 KAEHQRFLK 72 (114)
T ss_pred HHHHHHHHH
Confidence 344444443
No 276
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=38.82 E-value=2.8e+02 Score=24.49 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=49.6
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc------------------cHhHHHhcCccccCceEEEeCCCcee
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE------------------HKSMCYSLNVHVLPFFRFYRGAHGRV 186 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~------------------~~~l~~~~~I~~~PT~~~~~~G~~~v 186 (290)
.|.+-.|..|=.-...|.+|+.+ ++|..+...+|- ....++.++...+=|=-++-||....
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~~ 82 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREHR 82 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEEE
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeeee
Confidence 57789999999999999999999 487777666552 23456777777766655555887322
Q ss_pred eeecCCccCHHHHHHHHHhhC
Q 022923 187 CSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 187 ~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.+.+...+...|.+..
T Consensus 83 -----~g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 83 -----VGSDRAAVEAAIQAAR 98 (202)
T ss_dssp -----ETT-HHHHHHHHHHHH
T ss_pred -----eccCHHHHHHHHHHhh
Confidence 4677888888888775
No 277
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.43 E-value=1.2e+02 Score=23.90 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=46.0
Q ss_pred hHHHHHHHhcCCCeEEEEEe----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcC-ccccCce-EEEeC
Q 022923 108 QDLVESLWHAGDKLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFF-RFYRG 181 (290)
Q Consensus 108 ~~f~~~l~~~~~k~vlV~Fy----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~-I~~~PT~-~~~~~ 181 (290)
+.+++.+ .+.+|+++-= .|-||...+....+... +-+.|..||+=.++++.+.+. ...+||| -+|-+
T Consensus 6 ~~I~~~i---~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 6 DRIQKQI---KENPVVLFMKGTPEFPQCGFSAQAVQILSAC----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred HHHHHHh---hcCceEEEecCCCCCCCCCccHHHHHHHHHc----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 3455555 2344544332 67788877766655544 228899999988888876654 4579997 57778
Q ss_pred CC
Q 022923 182 AH 183 (290)
Q Consensus 182 G~ 183 (290)
|+
T Consensus 79 GE 80 (105)
T COG0278 79 GE 80 (105)
T ss_pred CE
Confidence 86
No 278
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=38.26 E-value=41 Score=25.05 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.4
Q ss_pred ccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhC
Q 022923 172 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 172 ~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.-|++++|+.....+........+.+++.++|.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458899987443345556667789999999998764
No 279
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=37.92 E-value=97 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=31.7
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc----cHhHHHhcCccccCceEE
Q 022923 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFRF 178 (290)
Q Consensus 125 ~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~I~~~PT~~~ 178 (290)
.|+.+.|+.|++..-.+....- ++....+|... ..++.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 4778999999988776665532 24555555422 234444444567898864
No 280
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=36.55 E-value=1.5e+02 Score=23.46 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CcEEEEEeccc--------cHhHHHhcCccccCceEEEeC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--------HKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~--------~~~l~~~~~I~~~PT~~~~~~ 181 (290)
++|++||.=-|+-|+.-. -...|++|.++|. ++.++..=|++ +.+|.+-..-..-++|-+|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~k 92 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEK 92 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEE
Confidence 689999999999999888 6678999999986 58888877753 234443333334567777744
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.45 E-value=54 Score=26.00 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=22.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc
Q 022923 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (290)
Q Consensus 123 lV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d 159 (290)
+..|+.+.|..|++....+++- ++.|-.+|+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence 3468899999999877666554 4555556654
No 282
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=36.07 E-value=68 Score=30.45 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=24.8
Q ss_pred hcCccccCceEEEeCCCceeeeec-CCccCHHHHHHHHHhhC
Q 022923 167 SLNVHVLPFFRFYRGAHGRVCSFS-CTNATIKKFKDALAKHT 207 (290)
Q Consensus 167 ~~~I~~~PT~~~~~~G~~~v~~~~-~g~~~~~~l~~~L~k~~ 207 (290)
.+....-.-+++|++..+.+.++. +...+...+...+++.+
T Consensus 89 d~~~~~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll 130 (335)
T KOG2868|consen 89 DLIFQLQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLL 130 (335)
T ss_pred CeeeeecCcceeeeccccceeEEEecCcchHHHHHHHHHHHH
Confidence 334455566667766666666654 33456666777777775
No 283
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=35.07 E-value=1.1e+02 Score=21.73 Aligned_cols=51 Identities=8% Similarity=-0.053 Sum_probs=32.9
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc----cHhHHHhcCccccCceE
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 177 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~I~~~PT~~ 177 (290)
..||.+.|+.|++..-.+.+..- ++.+..+|... .+++.+.-.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 45778889999888755554432 35666776532 33455555567889885
No 284
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=2.4e+02 Score=25.46 Aligned_cols=60 Identities=20% Similarity=0.358 Sum_probs=42.4
Q ss_pred CCCeEEEEEe-----CCCChHHHHHHHHHHHHHHHCCCcEEEEEeccccHhHHHhcC-ccccCce-EEEeCCC
Q 022923 118 GDKLVVVDFF-----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFF-RFYRGAH 183 (290)
Q Consensus 118 ~~k~vlV~Fy-----A~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~-I~~~PT~-~~~~~G~ 183 (290)
+.++|++ |. .|-||..+++...+... ++.|...|+-.+.++-+-.+ ...+||| -+|-+|.
T Consensus 137 ~a~~v~l-FmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 137 KAKPVML-FMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred ccCeEEE-EecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 3455554 54 78888888877776655 57788888888887765543 4578997 4777886
No 285
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.70 E-value=72 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=23.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 160 (290)
..|+.+.|..|++....+++- ++.|..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 468899999999988777664 56666666643
No 286
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.64 E-value=2.9e+02 Score=21.92 Aligned_cols=85 Identities=8% Similarity=-0.003 Sum_probs=48.0
Q ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CcEEEEE-ecccc-----------HhHHHhcCcc--ccCceEEEeC
Q 022923 119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQV-NYEEH-----------KSMCYSLNVH--VLPFFRFYRG 181 (290)
Q Consensus 119 ~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~--~v~~~~V-d~d~~-----------~~l~~~~~I~--~~PT~~~~~~ 181 (290)
++ +||.|- ..--+.=+.....+.+-...+. ++.++.+ +-... ..+.++|++. ++-.+++=+|
T Consensus 10 ~R-~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 10 NR-LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred Cc-eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 44 444444 3344445555555555333332 4555555 22222 2678889865 3334555577
Q ss_pred CCceeeeecCCccCHHHHHHHHHhh
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKH 206 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~ 206 (290)
|+ +........+.++|.+.|+..
T Consensus 89 G~--vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 89 GG--VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred Cc--EEEecCCCCCHHHHHHHHhCC
Confidence 76 443444678999999999875
No 287
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=29.14 E-value=60 Score=28.14 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=23.7
Q ss_pred HhHHHhcCccccCceEEEeC-CCceeeeecCCccCHHHHHHHH
Q 022923 162 KSMCYSLNVHVLPFFRFYRG-AHGRVCSFSCTNATIKKFKDAL 203 (290)
Q Consensus 162 ~~l~~~~~I~~~PT~~~~~~-G~~~v~~~~~g~~~~~~l~~~L 203 (290)
..-+.+.||.++|||++=.+ |+ -..|- |..-.+.+.++|
T Consensus 169 ~~~A~~~Gv~GVP~fvv~~~~~~--~e~fw-G~Drl~~~~~~l 208 (209)
T cd03021 169 TDEALKYGAFGLPWIVVTNDKGK--TEMFF-GSDRFEQVADFL 208 (209)
T ss_pred HHHHHHcCCCCCCEEEEEcCCCC--cccee-cCCcHHHHHHHh
Confidence 34567789999999998542 32 12233 555555555554
No 288
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.66 E-value=78 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=22.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEeccc
Q 022923 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (290)
Q Consensus 124 V~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 160 (290)
..|+.+.|..|++....+++- ++.|..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc
Confidence 468899999999987666554 55566666543
No 289
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=26.51 E-value=3.2e+02 Score=26.03 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=56.8
Q ss_pred cCCCeEEEEEeCC-----CChHHHHHHHHHHHHHHHCC-------CcEEEEEeccccHhHHHh--cCccccCceEEEeCC
Q 022923 117 AGDKLVVVDFFSP-----GCGGCKALHPKICQLAEMNP-------DVQFLQVNYEEHKSMCYS--LNVHVLPFFRFYRGA 182 (290)
Q Consensus 117 ~~~k~vlV~FyA~-----WC~~Ck~~~p~l~~la~~~~-------~v~~~~Vd~d~~~~l~~~--~~I~~~PT~~~~~~G 182 (290)
+.+|+|++-.-.. ...+-+++....++.++.+. +++|..+|..+ ++.+ ..--..|++++|.-.
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD---~~nqilM~als~P~l~i~Nts 324 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND---LANQILMAALSEPHLFIFNTS 324 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH---HHHHHHHHhhcCCeEEEEecC
Confidence 5688887766543 34577888888898888753 48999998653 3332 234578999999655
Q ss_pred Ccee--eeecCCccCHHHHHHHHHhhC
Q 022923 183 HGRV--CSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 183 ~~~v--~~~~~g~~~~~~l~~~L~k~~ 207 (290)
.... ......-.+.+.+.+||+...
T Consensus 325 nqeYfLse~d~qikniedilqFients 351 (468)
T KOG4277|consen 325 NQEYFLSEDDPQIKNIEDILQFIENTS 351 (468)
T ss_pred chheeeccCChhhhhHHHHHHHHhccc
Confidence 4111 111112357788888888754
No 290
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=25.08 E-value=2.5e+02 Score=25.65 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc------------------ccHhHHHhcCccccCceEEEeC
Q 022923 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE------------------EHKSMCYSLNVHVLPFFRFYRG 181 (290)
Q Consensus 120 k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d------------------~~~~l~~~~~I~~~PT~~~~~~ 181 (290)
.-||=.|.+..|..|=.-...+.+++++- +|.-+..++| .+....+.|+-++++|=-.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 33555677889999999998998888763 4444333332 2446778899999999777778
Q ss_pred CCceeeeecCCccCHHHHHHHHHhhC
Q 022923 182 AHGRVCSFSCTNATIKKFKDALAKHT 207 (290)
Q Consensus 182 G~~~v~~~~~g~~~~~~l~~~L~k~~ 207 (290)
|.. +..+.+..+|.+.|+...
T Consensus 121 Gr~-----~~~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GRV-----HANGADPGAIEDAIAAMA 141 (261)
T ss_pred chh-----hhcCCCHHHHHHHHHHhh
Confidence 862 225778888888887664
No 291
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=3.2e+02 Score=23.89 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=47.6
Q ss_pred CCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC----CcEEEEEec--------------------------cccHhHHH
Q 022923 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP----DVQFLQVNY--------------------------EEHKSMCY 166 (290)
Q Consensus 118 ~~k~vlV~Fy-A~WC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~--------------------------d~~~~l~~ 166 (290)
.++.|++.|| -++---|=...-.+.+.+.++. +|..+.+|- |.+.+||+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 5789999998 5555556444444444444442 233333331 33567899
Q ss_pred hcCcc----ccCc---eEEEeCCCceee--eecCCccCHHHHHHHHHh
Q 022923 167 SLNVH----VLPF---FRFYRGAHGRVC--SFSCTNATIKKFKDALAK 205 (290)
Q Consensus 167 ~~~I~----~~PT---~~~~~~G~~~v~--~~~~g~~~~~~l~~~L~k 205 (290)
.|||- +++. +++-++|-.+.. ....-+++.++....++.
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 99875 5554 233334432221 122345777777666653
No 292
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=23.88 E-value=4.6e+02 Score=22.38 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=25.0
Q ss_pred cHhHHHhcCccccCc-eEEEeCCCceeeeecCCccCHHHHHHHHH
Q 022923 161 HKSMCYSLNVHVLPF-FRFYRGAHGRVCSFSCTNATIKKFKDALA 204 (290)
Q Consensus 161 ~~~l~~~~~I~~~PT-~~~~~~G~~~v~~~~~g~~~~~~l~~~L~ 204 (290)
+..+.+.|+...-=. ++++ |.++++.-+..|..+.+++.+.|.
T Consensus 112 ~G~~~~aW~L~~~~SaiiVl-DK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 112 NGVVRKAWQLQEESSAIIVL-DKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred CCceeccccCCCCCceEEEE-cCCccEEEEECCCCCHHHHHHHHH
Confidence 334445555543322 4444 333456666778888888887765
No 293
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=2.3e+02 Score=26.22 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=42.9
Q ss_pred ccccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCC
Q 022923 158 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANK 231 (290)
Q Consensus 158 ~d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~ 231 (290)
+|-.+++.++++|..+|--+.+.+.. .. .....+.++|...+........+-.|..+.-.+-++.+....
T Consensus 11 ~dl~~~~~~~~~I~vlPL~V~~~g~~---y~-D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g 80 (282)
T COG1307 11 ADLPPELAEKLDITVLPLSVIIDGES---YF-DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKG 80 (282)
T ss_pred CCCCHHHHHhCCeEEEeEEEEECCEE---ee-ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence 44578889999999999999984432 22 335677777655554444333333344444555556666554
No 294
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=23.04 E-value=4.8e+02 Score=22.25 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecccc-HhHHHhcCccccCceEEEeCCCceeeeecCCccCHH
Q 022923 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK 197 (290)
Q Consensus 119 ~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~ 197 (290)
+...+-.|+.++|+.|++..=.+++..- ++.+..||.+.. +++.+..--..+|++. .+|. +. .+-.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~--~l------~ES~ 73 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL--TL------YESR 73 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE--Ee------eCHH
Confidence 3444555666789999998876665432 356666665432 3444444456789885 2442 21 2235
Q ss_pred HHHHHHHhhCCC
Q 022923 198 KFKDALAKHTPD 209 (290)
Q Consensus 198 ~l~~~L~k~~~~ 209 (290)
.|.++|.+..+.
T Consensus 74 AIl~YL~~~~~~ 85 (211)
T PRK09481 74 IIMEYLDERFPH 85 (211)
T ss_pred HHHHHHHHhCCC
Confidence 677777766543
No 295
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.17 E-value=1.8e+02 Score=26.47 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=41.0
Q ss_pred cccHhHHHhcCccccCceEEEeCCCceeeeecCCccCHHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHHhCC
Q 022923 159 EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANK 231 (290)
Q Consensus 159 d~~~~l~~~~~I~~~PT~~~~~~G~~~v~~~~~g~~~~~~l~~~L~k~~~~~~sl~p~~~~~~~e~~~l~~~~ 231 (290)
+-.++++++++|.-+|.-+.+. |+ ...+ .-..+.++|.+.+++......+-.|..+.-.+-++.+..+.
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~-~~-~y~D--~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~ 78 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIID-GK-TYRD--GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEG 78 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEEC-CE-Eeec--CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCC
Confidence 3356788999999999998884 44 1222 23578999999987643221222233333334444555544
No 296
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=21.16 E-value=4e+02 Score=23.79 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCeEEEEEe-----CCCChHHHHHHHHHHHHHHHC--CCcEEEEEec
Q 022923 109 DLVESLWHAGDKLVVVDFF-----SPGCGGCKALHPKICQLAEMN--PDVQFLQVNY 158 (290)
Q Consensus 109 ~f~~~l~~~~~k~vlV~Fy-----A~WC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~ 158 (290)
.+.++.. ...++++.+|. ...|+.|-.+...++.....+ .++.|+.|.-
T Consensus 59 ~L~dLF~-Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr 114 (211)
T PF05988_consen 59 SLADLFE-GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR 114 (211)
T ss_pred cHHHHcC-CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence 3444443 24566666666 678999999998885443332 3577877753
No 297
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=2.7e+02 Score=23.71 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCcEEEEEecc---ccHhHHHhcCccccCceEEEeCC
Q 022923 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE---EHKSMCYSLNVHVLPFFRFYRGA 182 (290)
Q Consensus 118 ~~k~vlV~FyA~WC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d---~~~~l~~~~~I~~~PT~~~~~~G 182 (290)
+.+.++.-|=+=.-+-|-.....|++.+.+++++.++.|..| ....+|...||..+=++--|++.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~~ 111 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRDR 111 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhhh
Confidence 445566667777889999999999999999999989988887 46677888888765555444443
No 298
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.10 E-value=3e+02 Score=22.07 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHHCCCcEEEEEecccc-HhHHHhcC--ccccCceEEEeCCCceeeeecCCc----cCHHHHHHHH
Q 022923 131 CGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTN----ATIKKFKDAL 203 (290)
Q Consensus 131 C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-~~l~~~~~--I~~~PT~~~~~~G~~~v~~~~~g~----~~~~~l~~~L 203 (290)
|++|..+.-.+...-.--..+.+.+|+...- ..+....| -++.|++++=.+.......-..|+ .+.+.+..+|
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 9999988776664433334588888887653 23444443 478999888643321011111122 3566777777
Q ss_pred HhhC
Q 022923 204 AKHT 207 (290)
Q Consensus 204 ~k~~ 207 (290)
.+.-
T Consensus 104 a~r~ 107 (112)
T PF11287_consen 104 AERH 107 (112)
T ss_pred HHHc
Confidence 6543
Done!