Query 022924
Match_columns 290
No_of_seqs 257 out of 1048
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 1.4E-18 4.8E-23 129.1 5.2 57 195-254 4-60 (63)
2 1gnf_A Transcription factor GA 99.7 4.5E-18 1.5E-22 119.1 4.4 44 197-243 3-46 (46)
3 2vut_I AREA, nitrogen regulato 99.7 3.2E-18 1.1E-22 118.3 3.4 42 199-243 2-43 (43)
4 4gat_A Nitrogen regulatory pro 99.7 8.6E-18 3E-22 125.9 4.3 54 197-253 8-61 (66)
5 2kae_A GATA-type transcription 99.6 2.6E-17 9E-22 124.9 -1.4 50 196-247 6-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 1.4E-15 4.9E-20 124.9 5.2 56 196-254 57-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 2.5E-14 8.5E-19 117.5 5.7 66 197-269 4-69 (115)
8 3ogl_Q JAZ1 incomplete degron 98.8 1.1E-09 3.6E-14 64.5 2.0 20 128-147 1-21 (21)
9 3ogk_Q JAZ1 incomplete degron 98.7 2.2E-09 7.5E-14 64.0 1.3 22 132-154 1-22 (22)
10 2e29_A ATP-dependent RNA helic 47.1 6.1 0.00021 30.6 1.0 31 67-98 51-81 (92)
11 3cw2_K Translation initiation 46.1 6.8 0.00023 32.6 1.2 30 198-230 103-132 (139)
12 2d74_B Translation initiation 41.8 7.2 0.00025 32.9 0.7 37 199-245 105-141 (148)
13 1nee_A EIF-2-beta, probable tr 41.2 7 0.00024 32.5 0.6 29 199-230 103-131 (138)
14 2l7y_A Putative endo-beta-N-ac 37.9 37 0.0013 26.7 4.2 33 52-84 45-78 (98)
15 1k81_A EIF-2-beta, probable tr 36.8 3.5 0.00012 26.6 -1.5 29 200-231 2-30 (36)
16 2crr_A Stromal membrane-associ 36.6 21 0.00072 29.6 2.8 36 198-237 29-64 (141)
17 1dl6_A Transcription factor II 35.7 14 0.00046 26.1 1.3 33 198-235 11-43 (58)
18 2crw_A ARF GAP 3, ADP-ribosyla 34.8 23 0.00078 29.7 2.8 37 197-237 28-64 (149)
19 2owa_A Arfgap-like finger doma 30.7 21 0.0007 29.6 1.8 36 198-237 36-71 (138)
20 1pft_A TFIIB, PFTFIIBN; N-term 29.6 9.3 0.00032 25.6 -0.4 32 198-234 5-36 (50)
21 2yrk_A Zinc finger homeobox pr 28.8 13 0.00044 26.5 0.2 21 216-236 7-27 (55)
22 2iqj_A Stromal membrane-associ 28.7 22 0.00074 29.2 1.6 36 198-237 27-62 (134)
23 3dwd_A ADP-ribosylation factor 26.0 39 0.0013 28.4 2.7 36 198-237 38-73 (147)
24 2olm_A Nucleoporin-like protei 24.9 29 0.00098 28.7 1.7 36 198-237 25-60 (140)
25 3cng_A Nudix hydrolase; struct 24.1 18 0.00062 29.7 0.3 31 198-230 3-33 (189)
26 2jrb_A ORF 1 protein; RNA bind 23.3 64 0.0022 24.9 3.2 24 69-94 46-69 (88)
27 2g2k_A EIF-5, eukaryotic trans 23.1 11 0.00039 32.4 -1.2 29 199-230 97-127 (170)
28 2cr8_A MDM4 protein; ZF-ranbp 23.1 38 0.0013 23.9 1.7 28 191-228 4-31 (53)
29 3k7a_M Transcription initiatio 22.8 25 0.00085 32.6 1.0 31 198-232 21-52 (345)
30 2b0o_E UPLC1; arfgap, structur 22.3 48 0.0016 29.3 2.7 37 197-237 41-77 (301)
31 1twf_L ABC10-alpha, DNA-direct 22.1 15 0.00053 27.0 -0.5 31 194-231 24-54 (70)
32 3sub_A ADP-ribosylation factor 22.1 43 0.0015 28.6 2.2 36 198-237 22-57 (163)
33 2p57_A GTPase-activating prote 22.0 24 0.00082 29.5 0.6 36 198-237 37-72 (144)
34 3o47_A ADP-ribosylation factor 20.6 36 0.0012 30.8 1.6 36 198-237 37-72 (329)
35 3h0g_L DNA-directed RNA polyme 20.3 31 0.0011 25.0 0.9 36 194-236 17-52 (63)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.74 E-value=1.4e-18 Score=129.07 Aligned_cols=57 Identities=32% Similarity=0.606 Sum_probs=50.4
Q ss_pred CCCCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccCCCCCCCcc
Q 022924 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE 254 (290)
Q Consensus 195 ~~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~~~~~~~~~~ 254 (290)
......|+||+++ .||+||+||+|+ +|||||||||++++++||+++++..+..+..+
T Consensus 4 ~~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 4 RRAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp CCTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 4567899999998 999999999996 99999999999999999999998887776654
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.71 E-value=4.5e-18 Score=119.09 Aligned_cols=44 Identities=41% Similarity=0.866 Sum_probs=41.1
Q ss_pred CCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 022924 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 243 (290)
Q Consensus 197 ~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~ 243 (290)
....|+||+++ .||+||+||+|. +|||||||||++|+++||+++
T Consensus 3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 45789999998 999999999996 999999999999999999975
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.71 E-value=3.2e-18 Score=118.27 Aligned_cols=42 Identities=50% Similarity=0.991 Sum_probs=39.8
Q ss_pred CccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 022924 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 243 (290)
Q Consensus 199 ~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~ 243 (290)
..|+||+++ .||+||+||+|+ +|||||||||++|+++||+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 579999998 999999999996 999999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.69 E-value=8.6e-18 Score=125.88 Aligned_cols=54 Identities=41% Similarity=0.747 Sum_probs=48.4
Q ss_pred CCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccCCCCCCCc
Q 022924 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPA 253 (290)
Q Consensus 197 ~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~~~~~~~~~ 253 (290)
....|+||+++ .||+||+||+|. +|||||||||++|+++||+++++..|.....
T Consensus 8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R 61 (66)
T 4gat_A 8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61 (66)
T ss_dssp SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence 46899999998 999999999995 9999999999999999999998876655543
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.61 E-value=2.6e-17 Score=124.85 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=42.0
Q ss_pred CCCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccCC
Q 022924 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED 247 (290)
Q Consensus 196 ~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~~~ 247 (290)
.....|+||+++ .||+||+||.+..+|||||||||++++++||+++++.-
T Consensus 6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~ 55 (71)
T 2kae_A 6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY 55 (71)
T ss_dssp --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence 456899999998 99999995444449999999999999999999998643
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=1.4e-15 Score=124.90 Aligned_cols=56 Identities=32% Similarity=0.620 Sum_probs=49.7
Q ss_pred CCCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccCCCCCCCcc
Q 022924 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE 254 (290)
Q Consensus 196 ~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~~~~~~~~~~ 254 (290)
.....|+||+++ .||+||+||+| ++|||||||||++|++.||+++++..|.....+
T Consensus 57 ~~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 57 RAGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp CTTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred cccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 346899999998 99999999999 899999999999999999999999887766543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.48 E-value=2.5e-14 Score=117.50 Aligned_cols=66 Identities=33% Similarity=0.633 Sum_probs=52.8
Q ss_pred CCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccCCCCCCCcccCCCCCCCCCCccCC
Q 022924 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAA 269 (290)
Q Consensus 197 ~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 269 (290)
....|+||+++ .||+||+||+| .+|||||||||+.++.+||+.+.+....... .....+.+|+++.
T Consensus 4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~----~~~~~C~~C~t~~ 69 (115)
T 4hc9_A 4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAAR----RAGTSCANCQTTT 69 (115)
T ss_dssp --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCC----CTTCCCTTTCCSC
T ss_pred CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccc----cccccCCCcCCCC
Confidence 46899999998 99999999999 7999999999999999999987664332211 1246889999765
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.83 E-value=1.1e-09 Score=64.48 Aligned_cols=20 Identities=55% Similarity=0.808 Sum_probs=17.8
Q ss_pred Chh-hHHHHHHHHHHhhhhhh.....
Q 022924 128 TQP-QRAASLDRFRQKRKERC..... 147 (290)
Q Consensus 128 dlp-aRkASL~RFlEKRK~R~..... 147 (290)
|+| +|++||||||||||+|+
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 355 99999999999999984
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.74 E-value=2.2e-09 Score=63.96 Aligned_cols=22 Identities=55% Similarity=0.777 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhhccccchh....
Q 022924 132 RAASLDRFRQKRKERCFDKKVRY.... 154 (290)
Q Consensus 132 RkASL~RFlEKRK~R~~~kk~~Y.... 154 (290)
|++||||||||||+|+.. +.||
T Consensus 1 Rk~SLqRFleKRk~R~~~-~~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTS-KAPYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhc-cCCC....
Confidence 799999999999999876 5787
No 10
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=47.05 E-value=6.1 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=27.2
Q ss_pred CCCCceeEEeCcEEEEECCCChHHHHHHHHHh
Q 022924 67 SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLL 98 (290)
Q Consensus 67 ~~~aQLTIfY~G~V~Vfd~vp~dKaqaIm~lA 98 (290)
..-..|||+=++.-.||| ||.|.+++|+...
T Consensus 51 ~~v~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 51 SQITRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp TTCEEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred hhhCeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 455789999999999999 9999999999764
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=46.06 E-value=6.8 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhH
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl 230 (290)
--.|..|+-+ .|-+-+.+..= -.-|+|||-
T Consensus 103 yVlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 132 (139)
T 3cw2_K 103 YVECSTCKSL--DTILKKEKKSW-YIVCLACGA 132 (139)
T ss_dssp CSSCCSSSSS--CCCSCSSCSTT-TSSCCC---
T ss_pred eeECCCCCCc--CcEEEEeCCeE-EEEecCCCC
Confidence 3689999998 88888865333 468999996
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=41.80 E-value=7.2 Score=32.85 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=26.2
Q ss_pred CccceecccCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccc
Q 022924 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM 245 (290)
Q Consensus 199 ~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~~r~~~~~~ 245 (290)
-.|..|+-+ .|-+-+.+..- -.-|+|||- .+++.+.+
T Consensus 105 VlC~~C~sP--dT~L~k~~r~~-~l~C~ACGa-------~~~V~~~k 141 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRFH-FLKCEACGA-------ETPIQHLL 141 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSSB-CCCCSSSCC-------CCCCCC--
T ss_pred EECCCCCCc--CcEEEEeCCEE-EEEecCCCC-------Cccccchh
Confidence 579999998 88888765333 468999986 45666555
No 13
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=41.16 E-value=7 Score=32.48 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=22.8
Q ss_pred CccceecccCCCCCccccCCCCCCccchhhhH
Q 022924 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (290)
Q Consensus 199 ~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl 230 (290)
-.|..|+-+ .|-+-+.+..= -.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcCCeE-EEEccCCCC
Confidence 479999998 88888865333 468999985
No 14
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=37.92 E-value=37 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=22.5
Q ss_pred cccCCCCccCC-CCCcCCCCceeEEeCcEEEEEC
Q 022924 52 DVAHDSGYATG-GNELSNSSQLTLSFRGQVYVFD 84 (290)
Q Consensus 52 ~v~~~~~~~~~-~~~~~~~aQLTIfY~G~V~Vfd 84 (290)
.+....+-++| .+.......|||.|.|+..-|+
T Consensus 45 ~lt~~~v~VsGfDs~~~G~QtlTVtY~G~t~~f~ 78 (98)
T 2l7y_A 45 SFTDEGVEISGYDAQKTGRQTLTLHYQGHEVSFD 78 (98)
T ss_dssp ESCCTTSEEESCCTTSCSSEEEEEEETTEEEEEE
T ss_pred ecccCCcEEEccCCCCCCcEEEEEEECCEEEEEE
Confidence 44455333333 1344788999999999999887
No 15
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.82 E-value=3.5 Score=26.65 Aligned_cols=29 Identities=31% Similarity=0.728 Sum_probs=20.2
Q ss_pred ccceecccCCCCCccccCCCCCCccchhhhHH
Q 022924 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (290)
Q Consensus 200 ~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~ 231 (290)
.|..|+-+ .|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCCc
Confidence 48889987 88887754222 2359999963
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.61 E-value=21 Score=29.57 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.=.-| ..+|-.|.-..+.-|+
T Consensus 29 N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 29 NKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 579999998 57999988888 7999999888887663
No 17
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.74 E-value=14 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhc
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~ 235 (290)
...|.+|+.. ++-.....| ...|..|||-+.-+
T Consensus 11 ~~~Cp~C~~~----~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 11 RVTCPNHPDA----ILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CCSBTTBSSS----CCEECSSSC-CEECTTTCCEECCS
T ss_pred cccCcCCCCC----ceeEeCCCC-eEEeCCCCCEEecc
Confidence 4579999873 244444455 79999999976543
No 18
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.80 E-value=23 Score=29.74 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 197 ~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
....|.+|+. .-|.|=.=.-| ..+|-.|--..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 28 TNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCC
Confidence 3589999998 57999998889 7999999988887765
No 19
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.71 E-value=21 Score=29.62 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.=.-| ..+|-.|.-..+.-|+
T Consensus 36 N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 36 NRTCFDCES---RNPTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCcCCCCcC---CCCCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 579999998 46999998889 7999999988887664
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.64 E-value=9.3 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.609 Sum_probs=20.4
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHh
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 234 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~ 234 (290)
...|.+|+.+ ++-. .+......|..||+-|..
T Consensus 5 ~~~CP~C~~~----~l~~-d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESA----ELIY-DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCC----CEEE-ETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCc----ceEE-cCCCCeEECcccCCcccc
Confidence 4579999762 3333 333337899999996643
No 21
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=28.77 E-value=13 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=16.2
Q ss_pred cCCCCCCccchhhhHHHHhcC
Q 022924 216 RGPSGPRSLCNACGLFWANKG 236 (290)
Q Consensus 216 rGp~G~~~LCNACGl~~~~~g 236 (290)
.+|+||++-|.-||.-|..+-
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~ 27 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARL 27 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSS
T ss_pred CCCCCCCccccccCccccccc
Confidence 378888889999998775543
No 22
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=28.65 E-value=22 Score=29.22 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.=.-| ..+|-.|.-..+.-|+
T Consensus 27 N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 27 NKFCADCQS---KGPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCcCcC---CCCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 589999998 46999998889 7999999888887664
No 23
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=26.01 E-value=39 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=31.0
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.=.-| ..||-.|.-..+.-|+
T Consensus 38 N~~CaDCga---~~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 38 NNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCccCCCCC---CCCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 579999998 46999998888 7999999988887664
No 24
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=24.93 E-value=29 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+||. .-|.|=.-.-| ..+|-.|.-..+.-|+
T Consensus 25 N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 579999998 57999988888 7999999887776554
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=24.07 E-value=18 Score=29.74 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.1
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhH
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl 230 (290)
.+.|..||.. .+...-.|..+....|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 4689999996 555555566666779999993
No 26
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=23.25 E-value=64 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=18.8
Q ss_pred CCceeEEeCcEEEEECCCChHHHHHH
Q 022924 69 SSQLTLSFRGQVYVFDSVTPDKVQAV 94 (290)
Q Consensus 69 ~aQLTIfY~G~V~Vfd~vp~dKaqaI 94 (290)
++.|+++|+|++..|.+ .+|.++.
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~ef 69 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQY 69 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHH
Confidence 67899999999999985 4454443
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.12 E-value=11 Score=32.38 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=20.9
Q ss_pred CccceecccCCCCCccc--cCCCCCCccchhhhH
Q 022924 199 TSCTHCGISSKSTPMMR--RGPSGPRSLCNACGL 230 (290)
Q Consensus 199 ~~C~nCg~~~~~Tp~WR--rGp~G~~~LCNACGl 230 (290)
-.|..|+-+ .|-+-+ .+..= -.-|+|||-
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~-~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTI-GNSCKACGY 127 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEE-EEEETTTCC
T ss_pred EECCCCCCC--ccEEEEecCCCEE-EEEccccCC
Confidence 479999998 888877 33222 356999986
No 28
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.06 E-value=38 Score=23.87 Aligned_cols=28 Identities=32% Similarity=0.717 Sum_probs=20.6
Q ss_pred CCCCCCCCCccceecccCCCCCccccCCCCCCccchhh
Q 022924 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228 (290)
Q Consensus 191 ~~~~~~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNAC 228 (290)
|+.+....|.|..|..- .+|+ .-.|..|
T Consensus 4 ~~~~~eD~WkC~~C~k~--N~Pl--------~ryC~rC 31 (53)
T 2cr8_A 4 GSSGSEDEWQCTECKKF--NSPS--------KRYCFRC 31 (53)
T ss_dssp CSSCCSCCEECSSSCCE--ECSS--------CCBCTTT
T ss_pred CcCCCcceeeccccccc--CCCc--------cchhHHH
Confidence 34556678999999986 7887 3467776
No 29
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.83 E-value=25 Score=32.61 Aligned_cols=31 Identities=29% Similarity=0.783 Sum_probs=20.3
Q ss_pred CCccceecccCCCCC-ccccCCCCCCccchhhhHHH
Q 022924 198 ETSCTHCGISSKSTP-MMRRGPSGPRSLCNACGLFW 232 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp-~WRrGp~G~~~LCNACGl~~ 232 (290)
...|.+|+.+ +| +-..-..| ...|..||+-+
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEc
Confidence 4579999873 22 22233455 78999999944
No 30
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=22.29 E-value=48 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 197 ~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
....|..|+.. -|.|-.-.-| ..+|-.|--..+.-|+
T Consensus 41 ~n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 41 GNSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 36899999984 6999999999 7999999766666553
No 31
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.12 E-value=15 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCCCCCccceecccCCCCCccccCCCCCCccchhhhHH
Q 022924 194 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (290)
Q Consensus 194 ~~~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~ 231 (290)
...-.-.|.+||.. .... .+...-|..||-+
T Consensus 24 ~~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 24 TATLKYICAECSSK--LSLS-----RTDAVRCKDCGHR 54 (70)
T ss_dssp -CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCCC
T ss_pred CceEEEECCCCCCc--ceeC-----CCCCccCCCCCce
Confidence 34567799999985 3332 2224689999983
No 32
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.11 E-value=43 Score=28.61 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=30.4
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.=.-| ..||-.|.-..+.-|+
T Consensus 22 N~~CaDCga---~~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 22 NNKCFDCGI---SNPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCccccCCC---CCCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 579999998 57999998888 7999999877776664
No 33
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.03 E-value=24 Score=29.52 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=30.7
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|=.-.-| ..+|-.|.-..+.-|+
T Consensus 37 N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 37 NKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCCCC
Confidence 579999998 46999888888 7999999988887664
No 34
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=20.62 E-value=36 Score=30.82 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=30.5
Q ss_pred CCccceecccCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 022924 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (290)
Q Consensus 198 ~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g~ 237 (290)
...|.+|+. .-|.|-.=.-| ..+|-.|.--.+.-|+
T Consensus 37 n~~c~dc~~---~~~~~~~~~~~-~~~c~~c~~~hr~~~~ 72 (329)
T 3o47_A 37 NNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGV 72 (329)
T ss_dssp TTBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCC---CCCCeEEecCC-EEEChhhhhhhcccCC
Confidence 579999998 57899888888 7999999988777654
No 35
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.30 E-value=31 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCCCCccceecccCCCCCccccCCCCCCccchhhhHHHHhcC
Q 022924 194 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 236 (290)
Q Consensus 194 ~~~~~~~C~nCg~~~~~Tp~WRrGp~G~~~LCNACGl~~~~~g 236 (290)
.....-.|..||.. .... + +...-|..||-+.-.+.
T Consensus 17 ~~~v~Y~C~~Cg~~--~~l~----~-~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 17 PATMIYLCADCGAR--NTIQ----A-KEVIRCRECGHRVMYKM 52 (63)
T ss_dssp --CCCCBCSSSCCB--CCCC----S-SSCCCCSSSCCCCCBCC
T ss_pred CCCeEEECCCCCCe--eecC----C-CCceECCCCCcEEEEEe
Confidence 34567899999996 3322 2 33588999997655444
Done!