Query 022925
Match_columns 290
No_of_seqs 150 out of 1404
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.3E-48 1.8E-52 339.3 30.7 252 30-284 63-336 (365)
2 COG0631 PTC1 Serine/threonine 100.0 1.2E-44 2.6E-49 308.1 22.0 241 28-281 4-255 (262)
3 PTZ00224 protein phosphatase 2 100.0 1.8E-43 4E-48 312.7 30.2 253 12-282 6-275 (381)
4 KOG0697 Protein phosphatase 1B 100.0 1.6E-41 3.6E-46 275.8 22.3 264 13-283 7-296 (379)
5 PF00481 PP2C: Protein phospha 100.0 4.4E-42 9.4E-47 293.0 13.9 236 33-270 1-254 (254)
6 KOG0698 Serine/threonine prote 100.0 2.4E-39 5.2E-44 284.3 28.9 249 33-282 41-308 (330)
7 cd00143 PP2Cc Serine/threonine 100.0 5.1E-39 1.1E-43 273.9 27.7 241 33-277 2-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 1.7E-38 3.6E-43 271.1 27.4 242 29-275 3-255 (255)
9 PRK14559 putative protein seri 100.0 2.3E-39 5E-44 301.5 23.5 243 30-283 373-640 (645)
10 KOG0699 Serine/threonine prote 100.0 6.1E-31 1.3E-35 221.5 19.7 155 124-280 330-505 (542)
11 KOG0700 Protein phosphatase 2C 100.0 1.2E-30 2.6E-35 224.5 18.7 218 46-265 85-378 (390)
12 KOG1379 Serine/threonine prote 99.9 3.1E-24 6.8E-29 179.1 19.7 199 44-276 89-329 (330)
13 KOG1323 Serine/threonine phosp 99.9 5.5E-22 1.2E-26 166.0 18.8 219 60-280 142-489 (493)
14 KOG0618 Serine/threonine phosp 99.9 1.4E-21 3E-26 183.1 14.8 248 28-282 518-776 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 3.1E-21 6.7E-26 160.2 12.8 174 37-246 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 6.2E-17 1.3E-21 132.4 20.1 182 32-262 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 9.1E-16 2E-20 148.2 19.4 198 31-277 551-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 3.1E-13 6.8E-18 110.3 18.3 173 61-278 3-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 1.7E-05 3.7E-10 71.4 19.1 189 45-278 161-366 (367)
20 PRK10693 response regulator of 74.7 34 0.00073 29.8 9.7 100 45-151 149-254 (303)
21 PF09436 DUF2016: Domain of un 63.4 4.8 0.0001 26.9 1.5 24 217-240 23-46 (72)
22 COG2168 DsrH Uncharacterized c 60.3 6 0.00013 28.0 1.6 50 219-271 23-72 (96)
23 COG3700 AphA Acid phosphatase 30.1 1.5E+02 0.0032 23.9 5.1 45 221-265 71-130 (237)
24 PF01436 NHL: NHL repeat; Int 28.9 94 0.002 16.1 3.5 21 131-151 8-28 (28)
25 cd08325 CARD_CASP1-like Caspas 25.0 1.6E+02 0.0035 20.1 4.2 32 234-265 30-61 (83)
26 cd08788 CARD_NOD2_2_CARD15 Cas 24.4 1.2E+02 0.0025 20.8 3.2 32 234-265 28-59 (81)
27 PF06972 DUF1296: Protein of u 22.0 1E+02 0.0023 19.7 2.4 25 235-259 19-44 (60)
28 PF07533 BRK: BRK domain; Int 20.9 1.8E+02 0.004 17.5 3.3 36 143-178 3-40 (46)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.3e-48 Score=339.28 Aligned_cols=252 Identities=37% Similarity=0.599 Sum_probs=212.5
Q ss_pred CceEEEEEeCCCCCCCCCccEEeeecCC--------CCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q 022925 30 GKFSYGYASSPGKRSSMEDFYETRIDGV--------EGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSA 101 (290)
Q Consensus 30 ~~~~~~~~s~~G~r~~neD~~~~~~~~~--------~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 101 (290)
..+.++.+|++|.|+.|||++++..... ......+|+|||||||+.+|++|++.+.+.+.+.......+...
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~a 142 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKV 142 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 3578999999999999999987643211 12235799999999999999999999999988765444566778
Q ss_pred HHHHHHHHHHHHHhhcc-cccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCe
Q 022925 102 IADAYSHTDSEFLKSEN-NQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGF 178 (290)
Q Consensus 102 l~~~~~~~~~~~~~~~~-~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~ 178 (290)
|.++|.+++..+..... .....+|||++++++.++++|++|+||||+|++++ ..+||+||++.+..|..||...||.
T Consensus 143 l~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~ 222 (365)
T PLN03145 143 VSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGY 222 (365)
T ss_pred HHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCc
Confidence 99999999998876532 22334999999999999999999999999999998 7899999999999999999999998
Q ss_pred EEeCCccccCCccccccccCcccCcc-------ceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhH----cCC
Q 022925 179 VMWAGTWRVGGVLAVSRAFGDRLLKQ-------YVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPI 247 (290)
Q Consensus 179 ~~~~~~~~~~~~~~~tr~lG~~~~~~-------~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il----~~~ 247 (290)
+. ..+.++.+.+||+||+..++. .+.++|++..+.+.+++++||||||||||+++++++.+++ ...
T Consensus 223 v~---~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~ 299 (365)
T PLN03145 223 VY---DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH 299 (365)
T ss_pred ee---cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC
Confidence 85 346778788999999976642 3568999999999987788899999999999999975544 444
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEEcccCCCCC
Q 022925 248 QDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGS 284 (290)
Q Consensus 248 ~~~~~~a~~L~~~a~~~~~~DNiTvivv~l~~~~~~~ 284 (290)
.+++++|+.|++.|+.+++.||+|+|||+|+..+.+.
T Consensus 300 ~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~~ 336 (365)
T PLN03145 300 NDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPPN 336 (365)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCcc
Confidence 6899999999999999999999999999999875554
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-44 Score=308.09 Aligned_cols=241 Identities=30% Similarity=0.413 Sum_probs=206.5
Q ss_pred CCCceEEEEEeCCCC-CCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCC----c-hh-HHH
Q 022925 28 QNGKFSYGYASSPGK-RSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKF----I-SD-TKS 100 (290)
Q Consensus 28 ~~~~~~~~~~s~~G~-r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~----~-~~-~~~ 100 (290)
....+.++..++.|. |..|||++.+........ ..+++|||||||+.++++|++.+++.|.+.... . .+ ..+
T Consensus 4 ~~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~ 82 (262)
T COG0631 4 GILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEE 82 (262)
T ss_pred ccceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 346788999999999 889999999986433333 679999999999999999999999998775221 1 11 578
Q ss_pred HHHHHHHHHHHHHHhhcc--cccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcC
Q 022925 101 AIADAYSHTDSEFLKSEN--NQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAG 176 (290)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~--~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g 176 (290)
.+.+.+..++..+..... ....+||||++++++.++++|++||||||+|++|+ .+|||.||++.+..+..++...+
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~ 162 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPE 162 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHH
Confidence 888899999988888753 45577999999999999999999999999999999 89999999999988888766555
Q ss_pred CeEEeCCccccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCCCCHHHHHHH
Q 022925 177 GFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKR 256 (290)
Q Consensus 177 ~~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~~~~~~~a~~ 256 (290)
+...+ +..+.+||++|+... ..|++....+.++ ++||||||||||.++++++.+++....+++++++.
T Consensus 163 ~~~~~------~~~~~ltralG~~~~-----~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~ 230 (262)
T COG0631 163 EARSH------PRRNALTRALGDFDL-----LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADK 230 (262)
T ss_pred HHHhC------ccchhhhhhcCCCcc-----cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHH
Confidence 54433 344479999998764 7899999999985 89999999999999999999999987899999999
Q ss_pred HHHHHHHcCCCCCcEEEEEEcccCC
Q 022925 257 LMQEAYQRGSADNITCVVVRFLANQ 281 (290)
Q Consensus 257 L~~~a~~~~~~DNiTvivv~l~~~~ 281 (290)
|++.|+++++.||+|+|++++....
T Consensus 231 li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 231 LIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHHhcCCCCceEEEEEEeeccc
Confidence 9999999999999999999998765
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.8e-43 Score=312.68 Aligned_cols=253 Identities=37% Similarity=0.574 Sum_probs=210.3
Q ss_pred CccCCCCCCCCCCccCCCCceEEEEEeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhC
Q 022925 12 SQVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRH 91 (290)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~ 91 (290)
++|..++..... .+..+.+++.+.+|.|+.|||++++... ++..+|+|||||||..+++++++.+.+.+...
T Consensus 6 ~~p~~~~~~~~~----~~~~~~~g~~s~~G~R~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~ 77 (381)
T PTZ00224 6 PKPVLSKLVDRA----GNSIFRCASACVNGYRESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKE 77 (381)
T ss_pred CCCccccccccC----CCccEEEEEEeCCCCCCCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhc
Confidence 566666655554 6789999999999999999999876522 34469999999999999999999998877654
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcccccccCCCeEEEEEEe-CCeEEEEEeccccEEEeec--ceecCCCCCCCChhH
Q 022925 92 PKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV-GDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDE 168 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~-~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~ 168 (290)
... .....++.++..+++++..... ..|||++++++. +.+++++||||||+|++|+ ..+||+||++.+..+
T Consensus 78 ~~~--~~~~~l~~a~~~~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E 151 (381)
T PTZ00224 78 PEP--MTDERMEELCLEIDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGE 151 (381)
T ss_pred ccc--ccHHHHHHHHHHHHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHH
Confidence 322 1234578888888888875432 368999988886 6799999999999999998 789999999999999
Q ss_pred HHHHHHcCCeEEeCCccccCCccccccccCcccCc---------cceecCCceEEEEecCCCcEEEEEcCCccc-CCCHH
Q 022925 169 RQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWD-VVTNE 238 (290)
Q Consensus 169 ~~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~~~~---------~~~~~~p~i~~~~~~~~~~~lll~SDGv~d-~l~~~ 238 (290)
..||.+.++.+. .+|.+|.+.+||++|+..++ +.+.++|++..+.+.+ +|+|||||||||| .++++
T Consensus 152 ~~RI~~~gg~v~---~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~e 227 (381)
T PTZ00224 152 RQRIEACGGRVV---SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNE 227 (381)
T ss_pred HhHHHHccCEec---cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHH
Confidence 999999998875 35778888999999996543 2355789999988876 5799999999999 79999
Q ss_pred HHHHhHcC----CCCHHHHHHHHHHHHHHcCCCCCcEEEEEEcccCCC
Q 022925 239 EAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 282 (290)
Q Consensus 239 ~i~~il~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~l~~~~~ 282 (290)
++.+++.+ ..+++++|+.|++.|+.+|+.||+||||+++...+.
T Consensus 228 Ei~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~~ 275 (381)
T PTZ00224 228 EVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGAS 275 (381)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCCC
Confidence 99998863 468999999999999999999999999999988753
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-41 Score=275.82 Aligned_cols=264 Identities=34% Similarity=0.534 Sum_probs=228.9
Q ss_pred ccCCCCCCCCCCccCCCCceEEEEEeCCCCCCCCCccEEeeec-CCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhC
Q 022925 13 QVHADDSPASGGGLSQNGKFSYGYASSPGKRSSMEDFYETRID-GVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRH 91 (290)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~neD~~~~~~~-~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~ 91 (290)
+|.|.+.-.++ +-|.+.||..|++|+|-.+||+...... ...-+++.+|+|+|||.|++.+..|++.+++.+.+.
T Consensus 7 KPkteKhn~~G----~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ss 82 (379)
T KOG0697|consen 7 KPKTEKHNAEG----EGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISS 82 (379)
T ss_pred CcccccccccC----cCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhh
Confidence 68888888888 4499999999999999999998765433 334578999999999999999999999999888764
Q ss_pred CCC--------chhHHHHHHHHHHHHHHHHHhhcc--cccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCC
Q 022925 92 PKF--------ISDTKSAIADAYSHTDSEFLKSEN--NQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSR 159 (290)
Q Consensus 92 ~~~--------~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~ 159 (290)
... .++.+..|+..|.+.++.+..... .....+|+|++.+++...++|+.|+||||+.+.|+ ...-|.
T Consensus 83 e~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~Tq 162 (379)
T KOG0697|consen 83 EEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQ 162 (379)
T ss_pred HHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEecc
Confidence 332 236788899999888887776542 22234999999999999999999999999999999 456799
Q ss_pred CCCCCChhHHHHHHHcCCeEEeCCccccCCccccccccCcccCc---------cceecCCceEEEEecCCCcEEEEEcCC
Q 022925 160 DHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDG 230 (290)
Q Consensus 160 dh~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~~~~---------~~~~~~p~i~~~~~~~~~~~lll~SDG 230 (290)
||.+.++.|+.||+.+||.+-- .|+||.+.++|++|++.++ +.++++|++........++|++|+.||
T Consensus 163 DHKP~~p~EkeRIqnAGGSVMI---qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDG 239 (379)
T KOG0697|consen 163 DHKPYLPKEKERIQNAGGSVMI---QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDG 239 (379)
T ss_pred CCCCCChHHHHHHhcCCCeEEE---EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccc
Confidence 9999999999999999998863 5899999999999999988 568999999999988888999999999
Q ss_pred cccCCCHHHHHHhHcC----CCCHHHHHHHHHHHHHHcCCCCCcEEEEEEcccCCCC
Q 022925 231 LWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGG 283 (290)
Q Consensus 231 v~d~l~~~~i~~il~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~l~~~~~~ 283 (290)
+||.++.+|+.++++. ..+..++|+.+++.++..|++||+|+|++-|.+.+..
T Consensus 240 IwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 240 IWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred hhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCC
Confidence 9999999999998866 3689999999999999999999999999999766543
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.4e-42 Score=293.02 Aligned_cols=236 Identities=49% Similarity=0.730 Sum_probs=195.1
Q ss_pred EEEEEeCCCCCCCCCccEEeeecCC---CCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHH
Q 022925 33 SYGYASSPGKRSSMEDFYETRIDGV---EGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFI--SDTKSAIADAYS 107 (290)
Q Consensus 33 ~~~~~s~~G~r~~neD~~~~~~~~~---~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~--~~~~~~l~~~~~ 107 (290)
.+++.+..|.|..|||++++..... ......+|+|+|||||..+++++++.+.+.+.+..... ..+...+..+|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 4788999999999999999876532 45678999999999999999999999997776543221 257788888888
Q ss_pred H-HHHHHHhhccc-ccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ce-ecCCCCCCCChhHHHHHHHcCCeEEeC
Q 022925 108 H-TDSEFLKSENN-QNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AI-AVSRDHKPDQTDERQRIEDAGGFVMWA 182 (290)
Q Consensus 108 ~-~~~~~~~~~~~-~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~-~lt~dh~~~~~~~~~~i~~~g~~~~~~ 182 (290)
. .+..+...... ....+|||++++++..+++|++|+||||+|+++. .. +||.||++.++.|..||...||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~- 159 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE- 159 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE-
T ss_pred ecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc-
Confidence 8 66666652211 4556999999999999999999999999999998 45 99999999999999999999999887
Q ss_pred CccccCCccccccccCcccCcc----ceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCCCC----HHHHH
Q 022925 183 GTWRVGGVLAVSRAFGDRLLKQ----YVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQD----PEEAA 254 (290)
Q Consensus 183 ~~~~~~~~~~~tr~lG~~~~~~----~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~~~----~~~~a 254 (290)
..|+++.+.+||+||+..+++ .+.++|++..+.+.+.+++||||||||||+++++++.+++.+..+ |+.+|
T Consensus 160 -~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a 238 (254)
T PF00481_consen 160 -NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAA 238 (254)
T ss_dssp -TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred -chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 678899999999999999998 899999999999998777999999999999999999999988644 99999
Q ss_pred HHHHHHHHHcCCCCCc
Q 022925 255 KRLMQEAYQRGSADNI 270 (290)
Q Consensus 255 ~~L~~~a~~~~~~DNi 270 (290)
+.|++.|+++|+.|||
T Consensus 239 ~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 239 EKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999996
No 6
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-39 Score=284.34 Aligned_cols=249 Identities=53% Similarity=0.754 Sum_probs=216.9
Q ss_pred EEEEEeCCCCCCCCCccEEeeecC----CCCc-eEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCch---hHHHHHHH
Q 022925 33 SYGYASSPGKRSSMEDFYETRIDG----VEGE-IVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFIS---DTKSAIAD 104 (290)
Q Consensus 33 ~~~~~s~~G~r~~neD~~~~~~~~----~~~~-~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~---~~~~~l~~ 104 (290)
..+.++.+|.|..+||++...... ..+. ...+|+|+|||||..+|+++.+.+...+.+....+. .....+++
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 345558888899999998876552 2233 578999999999999999999999999998776655 37889999
Q ss_pred HHH-HHHHHHHhhcccccccCCCeEEEEEEeCC-eEEEEEeccccEEEeec---ceecCCCCCCCChhHHHHHHHcCCeE
Q 022925 105 AYS-HTDSEFLKSENNQNRDAGSTASTAILVGD-RLLVANVGDSRAVICRG---AIAVSRDHKPDQTDERQRIEDAGGFV 179 (290)
Q Consensus 105 ~~~-~~~~~~~~~~~~~~~~~gtT~~~~~i~~~-~l~~a~vGDsr~yl~r~---~~~lt~dh~~~~~~~~~~i~~~g~~~ 179 (290)
+|. +.+.++... .......|||++++++.++ ++|++|+||||+++.+. ..+||.||.+....|..||...||.+
T Consensus 121 ~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v 199 (330)
T KOG0698|consen 121 AFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRV 199 (330)
T ss_pred HHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEE
Confidence 999 688888866 2223447888888888754 99999999999999974 68999999999999999999999999
Q ss_pred EeCC-ccccCCccccccccCcccCc-cceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcC----CCCHHHH
Q 022925 180 MWAG-TWRVGGVLAVSRAFGDRLLK-QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEA 253 (290)
Q Consensus 180 ~~~~-~~~~~~~~~~tr~lG~~~~~-~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~----~~~~~~~ 253 (290)
.+-. ..|.+|.+.++|+|||..++ +.+.++|++....+...++||||+|||+||.++.++..++++. ..++..+
T Consensus 200 ~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a 279 (330)
T KOG0698|consen 200 SNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAA 279 (330)
T ss_pred EEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHH
Confidence 8644 48999999999999999999 8899999999999998889999999999999999999999988 5699999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEEcccCCC
Q 022925 254 AKRLMQEAYQRGSADNITCVVVRFLANQG 282 (290)
Q Consensus 254 a~~L~~~a~~~~~~DNiTvivv~l~~~~~ 282 (290)
+..|.+.|..+++.||||||||.|.....
T Consensus 280 ~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 280 AKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 99999999999999999999999988864
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.1e-39 Score=273.92 Aligned_cols=241 Identities=45% Similarity=0.684 Sum_probs=205.2
Q ss_pred EEEEEeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHH
Q 022925 33 SYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKF-----ISDTKSAIADAYS 107 (290)
Q Consensus 33 ~~~~~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~-----~~~~~~~l~~~~~ 107 (290)
.++..+..|.|+.|||++++...... .+..+|+|||||||+..++++++.+++.+.+.... ...+...++.++.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 46777788889999999998744211 25679999999999999999999999998875433 2456678888999
Q ss_pred HHHHHHHhhcc--cccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCeEEeCC
Q 022925 108 HTDSEFLKSEN--NQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGFVMWAG 183 (290)
Q Consensus 108 ~~~~~~~~~~~--~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~~~~~~ 183 (290)
.+++.+..... .....+|||++++++..++++++|+||||+|++++ .+++|.||++.++.+..++...++...
T Consensus 81 ~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~--- 157 (254)
T cd00143 81 RADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS--- 157 (254)
T ss_pred HHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE---
Confidence 99998877653 24456999999999999999999999999999998 899999999999888899999888654
Q ss_pred ccccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCCC---CHHHHHHHHHHH
Q 022925 184 TWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQ---DPEEAAKRLMQE 260 (290)
Q Consensus 184 ~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~~---~~~~~a~~L~~~ 260 (290)
..+.++.+.+|+++|....++....+|++....+.+.+++|||||||||+++++++|.+++.... +++++|+.|++.
T Consensus 158 ~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~ 237 (254)
T cd00143 158 NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDL 237 (254)
T ss_pred eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 23455667899999998777777789999999984447899999999999999999999998866 799999999999
Q ss_pred HHHcCCCCCcEEEEEEc
Q 022925 261 AYQRGSADNITCVVVRF 277 (290)
Q Consensus 261 a~~~~~~DNiTvivv~l 277 (290)
|..+++.||+|+|++++
T Consensus 238 a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 238 ALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHhCCCCCCEEEEEEeC
Confidence 99999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.7e-38 Score=271.13 Aligned_cols=242 Identities=48% Similarity=0.738 Sum_probs=206.5
Q ss_pred CCceEEEEEeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCc----hhHHHHHHH
Q 022925 29 NGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFI----SDTKSAIAD 104 (290)
Q Consensus 29 ~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~----~~~~~~l~~ 104 (290)
...+.+++.+..|.|..|||++++.... ..+..+++||||+||..+++++++.+.+.+.+..... ..+...+.+
T Consensus 3 ~~~~~~~~~~~~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 3 NLGLRYGLSSMQGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CCceeEEEecCCCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 3457788877778899999999987431 2456899999999999999999999999988764333 247778899
Q ss_pred HHHHHHHHHHhhcccc--cccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCeEE
Q 022925 105 AYSHTDSEFLKSENNQ--NRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGFVM 180 (290)
Q Consensus 105 ~~~~~~~~~~~~~~~~--~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~~~ 180 (290)
++..++..+....... ...+|||++++++..++++++|+||||+|++|+ ..++|.||++.+..+..++...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999998887765332 345899999999999999999999999999998 689999999999999999999988664
Q ss_pred eCCccccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCCC---CHHHHHHHH
Q 022925 181 WAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQ---DPEEAAKRL 257 (290)
Q Consensus 181 ~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~~---~~~~~a~~L 257 (290)
. .+.++.+.+||++|....++.+...|++....+...+++|||||||||++++++++.+++.+.. ++.++++.|
T Consensus 161 ~---~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l 237 (255)
T smart00332 161 N---GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRL 237 (255)
T ss_pred C---CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3 2566677899999998888888899999998874446899999999999999999999998765 599999999
Q ss_pred HHHHHHcCCCCCcEEEEE
Q 022925 258 MQEAYQRGSADNITCVVV 275 (290)
Q Consensus 258 ~~~a~~~~~~DNiTvivv 275 (290)
++.|..++..||+|+||+
T Consensus 238 ~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 238 IDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHcCCCCCeEEEEC
Confidence 999999999999999985
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.3e-39 Score=301.49 Aligned_cols=243 Identities=22% Similarity=0.278 Sum_probs=184.2
Q ss_pred CceEEEEEeCCCC-CCCCCccEEeeecC-----CCC---ceEEEEEEecCCChHHHHHHHHHHHHHHHHhCC----CCch
Q 022925 30 GKFSYGYASSPGK-RSSMEDFYETRIDG-----VEG---EIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHP----KFIS 96 (290)
Q Consensus 30 ~~~~~~~~s~~G~-r~~neD~~~~~~~~-----~~~---~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~----~~~~ 96 (290)
..+.++..|++|. |+.|||++.+.... ..+ ....+|+|||||||+.+|+.|++.+++.|.+.. ....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4689999999998 99999998765321 011 134689999999999999888888877765421 1111
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc----cccccCCCeEEEEEEeCCeEEEEEeccccEEEee-c--ceecCCCCCCCChhHH
Q 022925 97 DTKSAIADAYSHTDSEFLKSEN----NQNRDAGSTASTAILVGDRLLVANVGDSRAVICR-G--AIAVSRDHKPDQTDER 169 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~----~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r-~--~~~lt~dh~~~~~~~~ 169 (290)
.....+++++..++..+..... .....||||++++++.++++|++||||||+|+++ + ..+||+||++.+...+
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~ 532 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQ 532 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHH
Confidence 2356688899999999876532 1344699999999999999999999999999984 3 7999999998764333
Q ss_pred HHHHHcCCeEEeCCccccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccC--CCH---HHHHHhH
Q 022925 170 QRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDV--VTN---EEAVAMI 244 (290)
Q Consensus 170 ~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~--l~~---~~i~~il 244 (290)
. | +........++.+.+||++|+...+ ..+|++..+.+.+ +++||||||||||+ +.. +++..++
T Consensus 533 ~-----G--i~~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il 601 (645)
T PRK14559 533 R-----G--VEPQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLL 601 (645)
T ss_pred h-----C--CCHHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHH
Confidence 2 2 1111122234567899999975421 2578999888876 67999999999994 443 4556677
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEEcccCCCC
Q 022925 245 KPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGG 283 (290)
Q Consensus 245 ~~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~l~~~~~~ 283 (290)
....++.++++.|++.|+.+|++||+|+||+++...+.-
T Consensus 602 ~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~ 640 (645)
T PRK14559 602 SSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQL 640 (645)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCC
Confidence 776789999999999999999999999999999766543
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=6.1e-31 Score=221.51 Aligned_cols=155 Identities=37% Similarity=0.620 Sum_probs=140.5
Q ss_pred CCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCeEEeCCccccCCccccccccCccc
Q 022925 124 AGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRL 201 (290)
Q Consensus 124 ~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~~ 201 (290)
+|||++++++.+.+++++|.||||+++.|. ..-++.||.+....+..||..+||.++.. .|++|-+++.|+||+..
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlD--GRVNGGLNLSRA~GDHa 407 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLD--GRVNGGLNLSRAFGDHA 407 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeec--ceecCccchhhhhhhhh
Confidence 799999999999999999999999999999 56689999999999999999999999875 48899999999999988
Q ss_pred Cc---------cceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHc----CCCCHHHHHHHHHHHHHHcC---
Q 022925 202 LK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRG--- 265 (290)
Q Consensus 202 ~~---------~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~----~~~~~~~~a~~L~~~a~~~~--- 265 (290)
++ +.+.+-|+|....+++.++|++++.||+|++++.+++.++++ +.....++|+.|.+.++.-.
T Consensus 408 YK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~G 487 (542)
T KOG0699|consen 408 YKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDG 487 (542)
T ss_pred hhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCC
Confidence 87 458889999999999999999999999999999999888775 35788999999999998752
Q ss_pred ---CCCCcEEEEEEcccC
Q 022925 266 ---SADNITCVVVRFLAN 280 (290)
Q Consensus 266 ---~~DNiTvivv~l~~~ 280 (290)
+.||+|+|++.|.+.
T Consensus 488 DGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 488 DGTGCDNMTVIITTFKRK 505 (542)
T ss_pred CCcCCCcceEEEEEeccc
Confidence 579999999999854
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-30 Score=224.54 Aligned_cols=218 Identities=36% Similarity=0.598 Sum_probs=177.6
Q ss_pred CCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhC------------CCC-------------------
Q 022925 46 MEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRH------------PKF------------------- 94 (290)
Q Consensus 46 neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~------------~~~------------------- 94 (290)
-||.+.+... ...++.|+||+|||||..++++.++.+..++..+ ...
T Consensus 85 ~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 85 EEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred ccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 4455444433 3567899999999999999999999999988721 100
Q ss_pred ---chhHHHHHHHHHHHHHHHHHhhc------ccccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--------ceec
Q 022925 95 ---ISDTKSAIADAYSHTDSEFLKSE------NNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--------AIAV 157 (290)
Q Consensus 95 ---~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--------~~~l 157 (290)
.....+.|.++|.++.+.+.... .+...-+|++|++.++.++.+|+||+||||+.|-+. ..||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 24567788999999988887542 333445999999999999999999999999998543 5789
Q ss_pred CCCCCCCChhHHHHHHHcCC---eEEeCCccccCCccccccccCcccCc---------------------cceecCCceE
Q 022925 158 SRDHKPDQTDERQRIEDAGG---FVMWAGTWRVGGVLAVSRAFGDRLLK---------------------QYVVADPEIQ 213 (290)
Q Consensus 158 t~dh~~~~~~~~~~i~~~g~---~~~~~~~~~~~~~~~~tr~lG~~~~~---------------------~~~~~~p~i~ 213 (290)
|.||+..+..|.+||...+- .+......|+.|.++++|+||+..+| |++.++|.+.
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99999999999999977663 33444457999999999999997777 7799999999
Q ss_pred EEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCC----CCHHHHHHHHHHHHHHcC
Q 022925 214 EEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI----QDPEEAAKRLMQEAYQRG 265 (290)
Q Consensus 214 ~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~----~~~~~~a~~L~~~a~~~~ 265 (290)
.+.+.+.|.||||+|||+|++++.+|+.+++... ..-..+|+.|++.|+.+.
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998773 234568899999998754
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-24 Score=179.09 Aligned_cols=199 Identities=23% Similarity=0.252 Sum_probs=135.7
Q ss_pred CCCCccEEeeecCCCCceEEEEEEecCCChHH--------HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHh
Q 022925 44 SSMEDFYETRIDGVEGEIVGLFGVFDGHGGAR--------AAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLK 115 (290)
Q Consensus 44 ~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~--------~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 115 (290)
+..||+|++... ....+.|||||+|||. .++..++.+.+.+........++...|..++.++. .
T Consensus 89 ~~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~----~ 160 (330)
T KOG1379|consen 89 KGGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELK----S 160 (330)
T ss_pred CCCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHh----h
Confidence 358999999843 5567999999999876 23444444444555555555677777777666543 2
Q ss_pred hcccccccCCCeEEEEEEe--CCeEEEEEeccccEEEeecceec--C--CCCCCCChhHHHHHHHcCCeEEeCCccccCC
Q 022925 116 SENNQNRDAGSTASTAILV--GDRLLVANVGDSRAVICRGAIAV--S--RDHKPDQTDERQRIEDAGGFVMWAGTWRVGG 189 (290)
Q Consensus 116 ~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGDsr~yl~r~~~~l--t--~dh~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 189 (290)
+..+ .-.++|++++.++ +++|+++|+|||.+.++|+.+.+ | ..|.++.+.+.. .+.
T Consensus 161 ~~~~--~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs----------------~~p 222 (330)
T KOG1379|consen 161 QKVP--IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLS----------------SPP 222 (330)
T ss_pred cCCC--CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeec----------------cCC
Confidence 2111 1166788888887 89999999999999999993222 2 233333221110 000
Q ss_pred ccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcC-----CCCHHHHHHHHHHHHHHc
Q 022925 190 VLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP-----IQDPEEAAKRLMQEAYQR 264 (290)
Q Consensus 190 ~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~-----~~~~~~~a~~L~~~a~~~ 264 (290)
. ....++++.. ...+...+.+.+ +|+|||+||||||++.+++|.+++.. ..+++..|+.|.+.|.+.
T Consensus 223 ~-~~~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~l 294 (330)
T KOG1379|consen 223 E-GYSSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKAREL 294 (330)
T ss_pred c-cccccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence 0 0012233332 355677788877 57999999999999999999999964 357999999999999775
Q ss_pred -----------------------CCCCCcEEEEEE
Q 022925 265 -----------------------GSADNITCVVVR 276 (290)
Q Consensus 265 -----------------------~~~DNiTvivv~ 276 (290)
|++||||+||..
T Consensus 295 s~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 295 SRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred ccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 558999999975
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-22 Score=165.99 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=163.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCC----------------------------------------CchhHH
Q 022925 60 EIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPK----------------------------------------FISDTK 99 (290)
Q Consensus 60 ~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~----------------------------------------~~~~~~ 99 (290)
-++.+|-+||||.|..++-.|++.+.+.+.+... ...-..
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 3678999999999999999998877655543100 001135
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCeEEEEEEeCCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcC-
Q 022925 100 SAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAG- 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g- 176 (290)
-.++.+|+..+..+.++........|+|+.+++.-.+++|++|.||||++++|+ ++.++.+.++.. |++|++...
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPet--ERqRlQ~Laf 299 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPET--ERQRLQELAF 299 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHH--HHHHHHHHhh
Confidence 577888888888888877666677899999999999999999999999999998 788999888764 777776543
Q ss_pred -------CeEE--------------------------------------------eCCccccCCccccccccCcccCc--
Q 022925 177 -------GFVM--------------------------------------------WAGTWRVGGVLAVSRAFGDRLLK-- 203 (290)
Q Consensus 177 -------~~~~--------------------------------------------~~~~~~~~~~~~~tr~lG~~~~~-- 203 (290)
+.++ .....|+-+.+.++|.+||..++
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 1110 01112333456799999987655
Q ss_pred -------cceecCCceEEEEec----CCCcEEEEEcCCcccCCCHHHHHHhHcCC------CCHH---HHHHHHHHHHHH
Q 022925 204 -------QYVVADPEIQEEVID----SSLEFLILASDGLWDVVTNEEAVAMIKPI------QDPE---EAAKRLMQEAYQ 263 (290)
Q Consensus 204 -------~~~~~~p~i~~~~~~----~~~~~lll~SDGv~d~l~~~~i~~il~~~------~~~~---~~a~~L~~~a~~ 263 (290)
|...+.|++....+. ..||++||+|||+||.++.+++..+++.. .+|. .+|+.|+..|..
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 678888999988765 45789999999999999999999988763 2343 356777766643
Q ss_pred c-------------CCCCCcEEEEEEcccC
Q 022925 264 R-------------GSADNITCVVVRFLAN 280 (290)
Q Consensus 264 ~-------------~~~DNiTvivv~l~~~ 280 (290)
. |+.|||||.|+-+...
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 2 4579999999988654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-21 Score=183.08 Aligned_cols=248 Identities=25% Similarity=0.375 Sum_probs=206.8
Q ss_pred CCCceEEEEEeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 022925 28 QNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYS 107 (290)
Q Consensus 28 ~~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~ 107 (290)
...-|.+|++...|+|.++--+......+.. .....|+++||-+......+...++.+++.++.....+-...++..|.
T Consensus 518 n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~-~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl 596 (1081)
T KOG0618|consen 518 NAFLWTYGVAGVSGQRNKVCSRAVWVENFFL-NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFL 596 (1081)
T ss_pred ceeheeeccchhcccccchhhhhhhhhhccc-CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 3456779999999998887665554433333 334699999999999999999999999998876555555566999999
Q ss_pred HHHHHHHhhcccccccCCCeEEEEEEe--------CCeEEEEEeccccEEEeecce--ecCC-CCCCCChhHHHHHHHcC
Q 022925 108 HTDSEFLKSENNQNRDAGSTASTAILV--------GDRLLVANVGDSRAVICRGAI--AVSR-DHKPDQTDERQRIEDAG 176 (290)
Q Consensus 108 ~~~~~~~~~~~~~~~~~gtT~~~~~i~--------~~~l~~a~vGDsr~yl~r~~~--~lt~-dh~~~~~~~~~~i~~~g 176 (290)
..++++...... .|..++.+.+. ..+++.||+|+|.+.+.++.+ ++|+ .|....++|.+||...+
T Consensus 597 ~~~rklg~~g~~----lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~ 672 (1081)
T KOG0618|consen 597 RLNRKLGEEGQV----LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSK 672 (1081)
T ss_pred HHhhhhhhhhcc----ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhc
Confidence 999998655432 45555555554 248999999999999999843 3333 33445789999999999
Q ss_pred CeEEeCCccccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCCCCHHHHHHH
Q 022925 177 GFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKR 256 (290)
Q Consensus 177 ~~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~~~~~~~a~~ 256 (290)
|++.. .++++|+...||++|.....|.+.+.|++....+.+.|++||+++.++|++++-++..+.+++..+|-.+|++
T Consensus 673 g~i~e--d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkK 750 (1081)
T KOG0618|consen 673 GFITE--DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKK 750 (1081)
T ss_pred CeecC--CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHH
Confidence 99976 5788999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHcCCCCCcEEEEEEcccCCC
Q 022925 257 LMQEAYQRGSADNITCVVVRFLANQG 282 (290)
Q Consensus 257 L~~~a~~~~~~DNiTvivv~l~~~~~ 282 (290)
|.+.|..+|+.||++++||++...+.
T Consensus 751 L~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 751 LCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred HHHHHHhcccccCeeEEEEEeecchh
Confidence 99999999999999999999987754
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.86 E-value=3.1e-21 Score=160.23 Aligned_cols=174 Identities=23% Similarity=0.333 Sum_probs=93.7
Q ss_pred EeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHH----HHHHHHHHHHHhCCCCchhH--HHHHHHHHHHHH
Q 022925 37 ASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAE----YVKHNLFSNLIRHPKFISDT--KSAIADAYSHTD 110 (290)
Q Consensus 37 ~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~----~a~~~~~~~l~~~~~~~~~~--~~~l~~~~~~~~ 110 (290)
.+++|.+..|||++.+... .+..+++||||+||...++ ++++.+.+.+.+........ ...++.+.....
T Consensus 3 ~sh~~~~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ----TTSSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5789999999999997643 3334779999999655554 45555555555555433222 223333333333
Q ss_pred HHH-----HhhcccccccCCCeEEEEEEeCCeEEEEEeccccEEEe-ec--ceecCCCCCCCChhHHHHHHHcCCeEEeC
Q 022925 111 SEF-----LKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVIC-RG--AIAVSRDHKPDQTDERQRIEDAGGFVMWA 182 (290)
Q Consensus 111 ~~~-----~~~~~~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~yl~-r~--~~~lt~dh~~~~~~~~~~i~~~g~~~~~~ 182 (290)
..+ ..........++||++++++.++.++++|+||||+|++ ++ .++++.+|+... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~----~------------ 142 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY----P------------ 142 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHH----H------------
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchh----h------------
Confidence 221 11123355568999999999999999999999999866 44 678888886211 0
Q ss_pred CccccCCccccccccCcccCccceecCC--ceEEEEecCCCcEEEEEcCCcccCCCHHH-HHHhHcC
Q 022925 183 GTWRVGGVLAVSRAFGDRLLKQYVVADP--EIQEEVIDSSLEFLILASDGLWDVVTNEE-AVAMIKP 246 (290)
Q Consensus 183 ~~~~~~~~~~~tr~lG~~~~~~~~~~~p--~i~~~~~~~~~~~lll~SDGv~d~l~~~~-i~~il~~ 246 (290)
..++.+.... +.+ ++..+.+.+ ++.|||||||||+.+...+ +..++..
T Consensus 143 ---------~~~~~~~~~~------~~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ---------NQTRSLTGDD------PEPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ---------HCTTSCCHHC------CCTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ---------hhhhccCccc------cccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 1122333221 233 333444444 6799999999999998654 6666654
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.77 E-value=6.2e-17 Score=132.38 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=129.9
Q ss_pred eEEEEEeCCCCCCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 022925 32 FSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDS 111 (290)
Q Consensus 32 ~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 111 (290)
+.+......+ ....-|++.+... .++..+++|+||+|+...|.+++..+...+......... +.+.+..+++
T Consensus 4 ~~~~~~~~p~-~~~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n~ 75 (193)
T smart00331 4 GLIAQYYEDA-TQVGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLNR 75 (193)
T ss_pred eEEEEEEcch-HhcCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHH
Confidence 4455555555 4677888877643 233579999999999989999999888888765433222 4455566666
Q ss_pred HHHhhcccccccCCCeEEEEEE--eCCeEEEEEeccccEEEee-c--ceecCCCCCCCChhHHHHHHHcCCeEEeCCccc
Q 022925 112 EFLKSENNQNRDAGSTASTAIL--VGDRLLVANVGDSRAVICR-G--AIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWR 186 (290)
Q Consensus 112 ~~~~~~~~~~~~~gtT~~~~~i--~~~~l~~a~vGDsr~yl~r-~--~~~lt~dh~~~~~~~~~~i~~~g~~~~~~~~~~ 186 (290)
.+.... ...+++|++++++ ..++++++|+||+|+|+++ + ..+++.+
T Consensus 76 ~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~-------------------------- 126 (193)
T smart00331 76 AIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD-------------------------- 126 (193)
T ss_pred HHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC--------------------------
Confidence 665542 2348999999998 4889999999999999998 3 2233332
Q ss_pred cCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHHHHHhHcCC--CCHHHHHHHHHHHHH
Q 022925 187 VGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI--QDPEEAAKRLMQEAY 262 (290)
Q Consensus 187 ~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~i~~il~~~--~~~~~~a~~L~~~a~ 262 (290)
.+..+|... ..+++...+.+.+ +|+|+|+|||+++.+.++++.+++.+. .++++.+++|++.+.
T Consensus 127 ------~~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 127 ------LGAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred ------CCceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 233455332 1335566667777 579999999999999999999999875 468888888887754
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.70 E-value=9.1e-16 Score=148.22 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=135.3
Q ss_pred ceEEEEEeCCCC-CCCCCccEEeeecCCCCceEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 022925 31 KFSYGYASSPGK-RSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHT 109 (290)
Q Consensus 31 ~~~~~~~s~~G~-r~~neD~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 109 (290)
++.+|.+...-. +..+.|.+.+... +++...++|+||+|+...|..++..+.+.+.+......+ ...++...
T Consensus 551 ~~~~g~a~~~k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~l 623 (764)
T TIGR02865 551 HVSTGVARAAKDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTV 623 (764)
T ss_pred eehhhHHHhcCCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHH
Confidence 334444443333 6789999887643 233468999999997777777777777666543221122 24455666
Q ss_pred HHHHHhhcccccccCCCeEEEEEEe--CCeEEEEEeccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCeEEeCCcc
Q 022925 110 DSEFLKSENNQNRDAGSTASTAILV--GDRLLVANVGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGFVMWAGTW 185 (290)
Q Consensus 110 ~~~~~~~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~~~~~~~~ 185 (290)
|+.+..... ..+.+|+.+++++ .+++.++++|+++.|+.|+ ..+++..+.+
T Consensus 624 N~~L~~~~~---~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP---------------------- 678 (764)
T TIGR02865 624 NSILSLRST---DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP---------------------- 678 (764)
T ss_pred HHHHHhCCC---CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce----------------------
Confidence 666554322 2378999999997 7899999999999999987 3444322211
Q ss_pred ccCCccccccccCcccCccceecCCceEEEEecCCCcEEEEEcCCcccCCCHHH-----HHHhHcC--CCCHHHHHHHHH
Q 022925 186 RVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEE-----AVAMIKP--IQDPEEAAKRLM 258 (290)
Q Consensus 186 ~~~~~~~~tr~lG~~~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d~l~~~~-----i~~il~~--~~~~~~~a~~L~ 258 (290)
+|-. ...+++.....+.+ ||+|+|+|||+++..++.+ +.+++.+ ..+|++.++.|+
T Consensus 679 -----------lGil-----~~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il 741 (764)
T TIGR02865 679 -----------IGIL-----DEVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLL 741 (764)
T ss_pred -----------eEec-----cCCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2211 01345666667777 5799999999999876433 7777754 368999999999
Q ss_pred HHHHHcC---CCCCcEEEEEEc
Q 022925 259 QEAYQRG---SADNITCVVVRF 277 (290)
Q Consensus 259 ~~a~~~~---~~DNiTvivv~l 277 (290)
+.+.+.. ..||+|++++++
T Consensus 742 ~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 742 EKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHhcCCCCCCCeEEEEEEe
Confidence 9998753 379999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.57 E-value=3.1e-13 Score=110.34 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=109.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccCCCeEEEEEEe--CCeE
Q 022925 61 IVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV--GDRL 138 (290)
Q Consensus 61 ~~~~~~V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~i~--~~~l 138 (290)
+..+++|+|++|....|.+.+..+...+........+ ..+.+..+++.+....... ...+|++++.++ .+++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 4578999999996666666555555555433211122 3445555555553333221 367888888877 7789
Q ss_pred EEEEeccccEEEeec-c---eecCCCCCCCChhHHHHHHHcCCeEEeCCccccCCccccccccCcccCccceecCCceEE
Q 022925 139 LVANVGDSRAVICRG-A---IAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQE 214 (290)
Q Consensus 139 ~~a~vGDsr~yl~r~-~---~~lt~dh~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~~~~~~~~~~p~i~~ 214 (290)
+++|+|+++++++++ . ..+... ...+|-.. ........
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~---------------------------------~~~lG~~~-----~~~~~~~~ 118 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESE---------------------------------GPPLGIFE-----DIDYQEQE 118 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCS---------------------------------SBBCSSSC-----TTCEEEEE
T ss_pred EEeCCCCCCEEEEeccccceeecccC---------------------------------ccceeeec-----cccccceE
Confidence 999999999999997 1 111111 11144321 02333444
Q ss_pred EEecCCCcEEEEEcCCcccCCCHH-------HHHHhHcC--CCCHHHHHHHHHHHHHHc---CCCCCcEEEEEEcc
Q 022925 215 EVIDSSLEFLILASDGLWDVVTNE-------EAVAMIKP--IQDPEEAAKRLMQEAYQR---GSADNITCVVVRFL 278 (290)
Q Consensus 215 ~~~~~~~~~lll~SDGv~d~l~~~-------~i~~il~~--~~~~~~~a~~L~~~a~~~---~~~DNiTvivv~l~ 278 (290)
+.+.+ +++|+|+|||+++....+ .+.+.+.+ ..++++.++.|++.+... ...||+|+|+++++
T Consensus 119 ~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 119 IQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 55555 689999999999998433 44566653 367999999999999874 46899999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.51 E-value=1.7e-05 Score=71.37 Aligned_cols=189 Identities=18% Similarity=0.127 Sum_probs=116.8
Q ss_pred CCCccEEeeecCCCCceEEEEEEecCCC-hHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHhhcccccc
Q 022925 45 SMEDFYETRIDGVEGEIVGLFGVFDGHG-GARAAEYVKHNLFSNLIRHPKF-ISDTKSAIADAYSHTDSEFLKSENNQNR 122 (290)
Q Consensus 45 ~neD~~~~~~~~~~~~~~~~~~V~DG~G-G~~~~~~a~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 122 (290)
..-|+|-+... +.....++|+|.+| |-.++-. +......+...... ..++. ..++..++.+.......
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~----~~l~~~n~~~~~~~~~~-- 230 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPA----DVLETLNRVLKQNLEED-- 230 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHH----HHHHHHHHHHHhcccCC--
Confidence 66677776533 12467899999999 4444433 33333333222211 12232 23334444444333222
Q ss_pred cCCCeEEEEEEe--CCeEEEEEeccccEEEeecceecCCCCCCCChhHHHHHHHcCCeEEeCCccccCCccccccccCcc
Q 022925 123 DAGSTASTAILV--GDRLLVANVGDSRAVICRGAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDR 200 (290)
Q Consensus 123 ~~gtT~~~~~i~--~~~l~~a~vGDsr~yl~r~~~~lt~dh~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~tr~lG~~ 200 (290)
+-+|+...+++ .+.+.++++|---.++++.....+. +.+ ......+|..
T Consensus 231 -~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~-~~l---------------------------~~~g~piG~~ 281 (367)
T COG2208 231 -MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEV-EDL---------------------------TALGLPIGLL 281 (367)
T ss_pred -cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCcee-EEc---------------------------cCCCceeeec
Confidence 77888888887 7899999999999999886221100 000 0233445532
Q ss_pred cCccceecCCceEEEEecCCCcEEEEEcCCccc-------CCCHHHHHHhHcC--CCCHHHHHHHHHHHHHHcC----CC
Q 022925 201 LLKQYVVADPEIQEEVIDSSLEFLILASDGLWD-------VVTNEEAVAMIKP--IQDPEEAAKRLMQEAYQRG----SA 267 (290)
Q Consensus 201 ~~~~~~~~~p~i~~~~~~~~~~~lll~SDGv~d-------~l~~~~i~~il~~--~~~~~~~a~~L~~~a~~~~----~~ 267 (290)
. ...+.+....+.+ ||.+++.|||+.+ .+..+...+++.+ ..+++++++.+.+...+.. ..
T Consensus 282 ~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~ 355 (367)
T COG2208 282 P-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQD 355 (367)
T ss_pred C-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCcccc
Confidence 1 1344555566667 7899999999999 5667777777763 3688999888888877643 35
Q ss_pred CCcEEEEEEcc
Q 022925 268 DNITCVVVRFL 278 (290)
Q Consensus 268 DNiTvivv~l~ 278 (290)
||+|+|++++.
T Consensus 356 DDiTll~lk~~ 366 (367)
T COG2208 356 DDITLLVLKVK 366 (367)
T ss_pred CceEEEEEEec
Confidence 88999999875
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=74.69 E-value=34 Score=29.84 Aligned_cols=100 Identities=9% Similarity=0.021 Sum_probs=53.7
Q ss_pred CCCccEEeeecCCCCceEEEEEEec--CCChHHH-HHHHHHHHHH-HHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccc
Q 022925 45 SMEDFYETRIDGVEGEIVGLFGVFD--GHGGARA-AEYVKHNLFS-NLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQ 120 (290)
Q Consensus 45 ~neD~~~~~~~~~~~~~~~~~~V~D--G~GG~~~-~~~a~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 120 (290)
..-|.+.+... +++...|.++| |||++.+ +.+....++. .+...............+.+...|+.+.......
T Consensus 149 ~~GD~~d~~~l---~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~ 225 (303)
T PRK10693 149 KPGLVLDIAAL---SDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG 225 (303)
T ss_pred CCccEEeeeec---CCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc
Confidence 35566655432 23445677777 6664442 2333334344 3333110000000013556667777766653222
Q ss_pred cccCCCeEEEEEEe--CCeEEEEEeccccEEEe
Q 022925 121 NRDAGSTASTAILV--GDRLLVANVGDSRAVIC 151 (290)
Q Consensus 121 ~~~~gtT~~~~~i~--~~~l~~a~vGDsr~yl~ 151 (290)
. -|+..++++ .+++.+++.|-...++.
T Consensus 226 ---~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~ 254 (303)
T PRK10693 226 ---Q-FPLLVGYYHRELKNLILVSAGLNATLNT 254 (303)
T ss_pred ---e-eeEEEEEEEcCCCeEEEEeCCCCCEEec
Confidence 2 478888887 67899999999997743
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=63.43 E-value=4.8 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.9
Q ss_pred ecCCCcEEEEEcCCcccCCCHHHH
Q 022925 217 IDSSLEFLILASDGLWDVVTNEEA 240 (290)
Q Consensus 217 ~~~~~~~lll~SDGv~d~l~~~~i 240 (290)
++..|..+|+++||+|=-+....+
T Consensus 23 l~~~G~Rllva~nGv~lEv~r~WL 46 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRRPWL 46 (72)
T ss_pred cccCCcEEEEecCcEEEEEechHH
Confidence 345688999999999976555443
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=60.25 E-value=6 Score=27.98 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCcccCCCHHHHHHhHcCCCCHHHHHHHHHHHHHHcCCCCCcE
Q 022925 219 SSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNIT 271 (290)
Q Consensus 219 ~~~~~lll~SDGv~d~l~~~~i~~il~~~~~~~~~a~~L~~~a~~~~~~DNiT 271 (290)
.++|-++|+.|||+-.+...+..+-++.. | ..+=.|-+...+||-.+.++
T Consensus 23 ~~~D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 23 TEGDAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred cccCeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhcC
Confidence 33679999999999999988877777663 2 33444566666776554444
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=30.12 E-value=1.5e+02 Score=23.89 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=31.7
Q ss_pred CcEEEEEcCCccc-----------CCCHHHHHHhHcC----CCCHHHHHHHHHHHHHHcC
Q 022925 221 LEFLILASDGLWD-----------VVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRG 265 (290)
Q Consensus 221 ~~~lll~SDGv~d-----------~l~~~~i~~il~~----~~~~~~~a~~L~~~a~~~~ 265 (290)
||.+|+.|.|||. +|..+.+=+.+.+ ..-|.+.|+.|++.-.++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 6799999999996 3333333333332 3569999999999887775
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.92 E-value=94 Score=16.13 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.6
Q ss_pred EEEeCCeEEEEEeccccEEEe
Q 022925 131 AILVGDRLLVANVGDSRAVIC 151 (290)
Q Consensus 131 ~~i~~~~l~~a~vGDsr~yl~ 151 (290)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 333789999999999998754
No 25
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.97 E-value=1.6e+02 Score=20.12 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCCHHHHHHhHcCCCCHHHHHHHHHHHHHHcC
Q 022925 234 VVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 265 (290)
Q Consensus 234 ~l~~~~i~~il~~~~~~~~~a~~L~~~a~~~~ 265 (290)
.|+++|+..+-.......+.|+.|++....+|
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG 61 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKG 61 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 57888888888766678999999999888765
No 26
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=24.36 E-value=1.2e+02 Score=20.80 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCCHHHHHHhHcCCCCHHHHHHHHHHHHHHcC
Q 022925 234 VVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 265 (290)
Q Consensus 234 ~l~~~~i~~il~~~~~~~~~a~~L~~~a~~~~ 265 (290)
+++.+|-.+|......+.+-|++|++.+..+|
T Consensus 28 ~is~~Ecd~Ir~p~~T~sqqARrLLD~V~~KG 59 (81)
T cd08788 28 FFSSYDCDEIRLPIFTPSQQARRLLDLVKAKG 59 (81)
T ss_pred CccHhhcchhhcCCCChHHHHHHHHHHHHHHh
Confidence 35666666676656789999999999988765
No 27
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=22.02 E-value=1e+02 Score=19.69 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=20.7
Q ss_pred CCHHHHHHhHcCC-CCHHHHHHHHHH
Q 022925 235 VTNEEAVAMIKPI-QDPEEAAKRLMQ 259 (290)
Q Consensus 235 l~~~~i~~il~~~-~~~~~~a~~L~~ 259 (290)
-++++|..+|... -+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5788999988764 589999999876
No 28
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.88 E-value=1.8e+02 Score=17.48 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=23.8
Q ss_pred eccccEEEeec--ceecCCCCCCCChhHHHHHHHcCCe
Q 022925 143 VGDSRAVICRG--AIAVSRDHKPDQTDERQRIEDAGGF 178 (290)
Q Consensus 143 vGDsr~yl~r~--~~~lt~dh~~~~~~~~~~i~~~g~~ 178 (290)
.||.|+-++.. .+.|+-++.+........+...-++
T Consensus 3 ~~eerV~Vi~~~tGk~l~G~~AP~~~~L~~WL~~~P~y 40 (46)
T PF07533_consen 3 TGEERVPVINRKTGKRLTGDEAPKLKELEEWLEEHPGY 40 (46)
T ss_dssp TTTSB--EEETTTTEEE-CCCS-BCCCHHHHHHH-TTE
T ss_pred CCcceeEeEECCCCCCcccccCcCHHHHHHHHHHCcCc
Confidence 48899988876 8889988888877777777666554
Done!