BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022926
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox
Protein Nkx-3.1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6470a
Length = 69
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 141 LSQHGQISETNVYNWFQNRRARSKRKQLVS 170
L+++ +++ET V WFQNRR ++KRKQL S
Sbjct: 37 LAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 34.3 bits (77), Expect = 0.094, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
R+R T T QL +LE++F + T P +E+ ++++ + E+ V WF+NRRA+ +
Sbjct: 9 RERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKIN----LPESRVQVWFKNRRAKCR 63
>pdb|2DA6|A Chain A, Solution Structure Of The Homeobox Domain Of Hepatocyte
Nuclear Factor 1-Beta (Hnf-1beta)
Length = 102
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 98 GGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------H 144
G S R R+ P QIL +D+ PSK++ + + E ++ H
Sbjct: 1 GSSGSSGRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAH 59
Query: 145 GQ----ISETNVYNWFQNRR 160
G ++E VYNWF NRR
Sbjct: 60 GLGSNLVTEVRVYNWFANRR 79
>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE
Length = 58
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 105 RQRWTP-TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163
R+ TP T QL LE F Q ++ E S ++ET V WFQNRRA++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAER-----AEFSSSLSLTETQVKIWFQNRRAKA 55
Query: 164 KR 165
KR
Sbjct: 56 KR 57
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
Length = 61
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
R R T T QL+ LE F++ T P +E L+Q +++E V WF NRRAR +
Sbjct: 4 RSRTTFTAEQLEELERAFER-THYPDIYTREE----LAQRAKLTEARVQVWFSNRRARWR 58
Query: 165 RK 166
++
Sbjct: 59 KQ 60
>pdb|2CUF|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Hypothetical Protein Flj21616
Length = 95
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 115 LQILESIFDQGTGTPSKQKIKEIT-----------VELSQHGQISETNVYNWFQNRRARS 163
L ++ES F++ P + K +EI +LS +++ VYNWF NRR
Sbjct: 19 LAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEI 77
Query: 164 KRKQLVSS 171
KR+ +++
Sbjct: 78 KRRANIAA 85
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 67
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
R R T T QL+ LE F + T P +E+ +++ ++E + WFQNRRA+ +
Sbjct: 8 RYRTTFTSFQLEELEKAFSR-THYPDVFTREELAMKIG----LTEARIQVWFQNRRAKWR 62
Query: 165 RKQLV 169
+++ V
Sbjct: 63 KQEKV 67
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain
pdb|2LKX|A Chain A, Nmr Structure Of The Homeodomain Of Pitx2 In Complex With
A Taatcc Dna Binding Site
Length = 68
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
RQR T QLQ LE+ F Q P +EI V + ++E V WF+NRRA+ +
Sbjct: 5 RQRTHFTSQQLQELEATF-QRNRYPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWR 59
Query: 165 RKQ 167
+++
Sbjct: 60 KRE 62
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 32.0 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
R R T T QL+ LE F + T P +E+ +++ ++E + WFQNRRA+ +
Sbjct: 1 RYRTTFTSFQLEELEKAFSR-THYPDVFTREELAMKIG----LTEARIQVWFQNRRAKWR 55
Query: 165 RKQ 167
+++
Sbjct: 56 KQE 58
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 96 SGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNW 155
S G K R R T T QL+ LE +F Q T P +L+ ++E V W
Sbjct: 4 SNKGKK--RRNRTTFTSYQLEELEKVF-QKTHYPDVY----AREQLAMRTDLTEARVQVW 56
Query: 156 FQNRRARSKRKQ 167
FQNRRA+ ++++
Sbjct: 57 FQNRRAKWRKRE 68
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 140 ELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172
EL+Q ++E + WFQNRRAR RKQ S S
Sbjct: 50 ELAQRTNLTEARIQVWFQNRRARL-RKQHTSVS 81
>pdb|2L7Z|A Chain A, Nmr Structure Of A13 Homedomain
Length = 73
Score = 31.2 bits (69), Expect = 0.71, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 100 HKISARQRWTP-TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158
H + R++ P T VQL+ LE + +K K+ +S +SE V WFQN
Sbjct: 3 HMLEGRKKRVPYTKVQLKELEREY-----ATNKFITKDKRRRISATTNLSERQVTIWFQN 57
Query: 159 RRARSKR 165
RR + K+
Sbjct: 58 RRVKEKK 64
>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From
Human Cdna
Length = 70
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 141 LSQHGQISETNVYNWFQNRRARSKR 165
L++ Q+SE V WFQNRRA+ +R
Sbjct: 40 LAKMLQLSERQVKTWFQNRRAKWRR 64
>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi
Tarazu Homeodomain From Drosophila And Comparison With
The Antennapedia Homeodomain
Length = 70
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162
S R R T T Q LE F +++I +I LS +SE + WFQNRR +
Sbjct: 3 SKRTRQTYTRYQTLELEKEFHFNRYITRRRRI-DIANALS----LSERQIKIWFQNRRMK 57
Query: 163 SKRKQLVSSS 172
SK+ + + SS
Sbjct: 58 SKKDRTLDSS 67
>pdb|2H8R|A Chain A, Hepatocyte Nuclear Factor 1b Bound To Dna: Mody5 Gene
Product
pdb|2H8R|B Chain B, Hepatocyte Nuclear Factor 1b Bound To Dna: Mody5 Gene
Product
Length = 221
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 18/73 (24%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------HGQ----I 147
R R+ P QIL +D+ PSK++ + + E ++ HG +
Sbjct: 144 RNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLV 202
Query: 148 SETNVYNWFQNRR 160
+E VYNWF NRR
Sbjct: 203 TEVRVYNWFANRR 215
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 139 VELSQHGQISETNVYNWFQNRRARSKRKQ 167
VE++ +++ET V WFQNRR + K+++
Sbjct: 65 VEIAATLELNETQVKIWFQNRRMKQKKRE 93
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain
Length = 60
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168
T T QL+ LE F + T P +E+ +++ ++E + WFQNRRA+ ++++
Sbjct: 5 TFTSFQLEELEKAFSR-THYPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59
Query: 169 V 169
V
Sbjct: 60 V 60
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant
Length = 68
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
RQR T QLQ LE+ F Q P +EI V + ++E V WF+NRRA+ +
Sbjct: 5 RQRTHFTSQQLQELEATF-QRNHYPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWR 59
Query: 165 RKQ 167
+++
Sbjct: 60 KRE 62
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L
Length = 67
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
R R T Q+++LE++F + P +I +L+Q + + WFQNRRA+ K
Sbjct: 3 RPRTAFTQNQIEVLENVF-RVNCYPGI----DILEDLAQKLNLELDRIQIWFQNRRAKLK 57
Query: 165 RKQ 167
R
Sbjct: 58 RSH 60
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
Length = 81
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 92 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETN 151
P M G + + R R T T Q LE F +++I E++ ++E
Sbjct: 9 PWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRI-----EMAHALSLTERQ 63
Query: 152 VYNWFQNRRARSKR 165
+ WFQNRR + K+
Sbjct: 64 IKIWFQNRRMKLKK 77
>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna
pdb|1JGG|B Chain B, Even-Skipped Homeodomain Complexed To At-Rich Dna
Length = 60
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 140 ELSQHGQISETNVYNWFQNRRARSKRKQ 167
EL+ + E+ + WFQNRR + KR++
Sbjct: 33 ELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>pdb|1IC8|A Chain A, Hepatocyte Nuclear Factor 1a Bound To Dna : Mody3 Gene
Product
pdb|1IC8|B Chain B, Hepatocyte Nuclear Factor 1a Bound To Dna : Mody3 Gene
Product
Length = 194
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 79 AAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEIT 138
A GG + D L T G R R+ P QIL +++ PSK++ +E
Sbjct: 96 AGQGGLIEEPTGDELPTKKG-----RRNRFKWGPASQQILFQAYER-QKNPSKEE-RETL 148
Query: 139 VELSQHGQ------------------ISETNVYNWFQNRR 160
VE + ++E VYNWF NRR
Sbjct: 149 VEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 140 ELSQHGQISETNVYNWFQNRRARSK 164
EL++ ++ T V NWF+NRR R +
Sbjct: 526 ELAEATGLTTTQVSNWFKNRRQRDR 550
>pdb|2LD5|A Chain A, Solution Nmr-Derived Complex Structure Of Hoxa13 Dna
Binding Domain Bound To Dna
Length = 67
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164
++R T VQL+ LE + +K K+ +S +SE V WFQNRR + K
Sbjct: 3 KKRVPYTKVQLKELEREY-----ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEK 57
Query: 165 R 165
+
Sbjct: 58 K 58
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
From Homo Sapiens
Length = 71
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 146 QISETNVYNWFQNRRARSKR 165
++SE V WFQNRRA+ KR
Sbjct: 45 KLSEVQVKIWFQNRRAKWKR 64
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
pdb|2H1K|B Chain B, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
Length = 63
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 105 RQRWTPTPVQLQILES--IFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162
R R T QL LE +F++ P + VEL+ ++E ++ WFQNRR +
Sbjct: 5 RTRTAYTRAQLLELEKEFLFNKYISRPRR-------VELAVMLNLTERHIKIWFQNRRMK 57
Query: 163 SKRKQ 167
K+++
Sbjct: 58 WKKEE 62
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 105 RQRWTPTPVQLQIL--ESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162
R R T TP QL+IL + + D P+++ + I E+ ++ V WFQN RAR
Sbjct: 19 RLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKKRV----VQVWFQNTRAR 71
Query: 163 SKR 165
++
Sbjct: 72 ERK 74
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 85 LGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH 144
+G +Y + + G ++ ++R T + LE F + + PS Q+I + EL+
Sbjct: 73 VGALYNEKV----GANERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEELNLE 127
Query: 145 GQISETNVYNWFQNRRARSKR 165
++ V WF NRR R KR
Sbjct: 128 KEV----VRVWFCNRRQREKR 144
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 97 GGGHKISARQRWTPTPVQLQILESIFDQGT--GTPSKQKIKEITVELSQHGQISETNVYN 154
G K R R T +QL LE F++ TP + ++L++ +S+ V
Sbjct: 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDR-------IDLAESLGLSQLQVKT 63
Query: 155 WFQNRRARSKR 165
W+QNRR + K+
Sbjct: 64 WYQNRRMKWKK 74
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 111 TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163
T VQ + L +IF + +K+ KE+ + +SQ + + V N+F N R RS
Sbjct: 105 TDVQRRTLHAIFKE-----NKRPSKELQITISQQLGLELSTVSNFFMNARRRS 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,683,398
Number of Sequences: 62578
Number of extensions: 214572
Number of successful extensions: 415
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 34
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)