Query 022926
Match_columns 290
No_of_seqs 340 out of 1604
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 3.4E-37 1.2E-41 265.4 2.6 149 6-168 11-159 (164)
2 3l1p_A POU domain, class 5, tr 100.0 4.6E-37 1.6E-41 262.2 2.7 151 2-166 4-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 7.1E-37 2.4E-41 258.7 3.1 143 8-166 3-145 (146)
4 3d1n_I POU domain, class 6, tr 100.0 7.1E-36 2.4E-40 253.5 5.3 148 7-165 3-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 1.9E-34 6.6E-39 247.0 4.0 154 7-166 6-159 (160)
6 2dms_A Homeobox protein OTX2; 99.8 1.8E-19 6.1E-24 136.9 6.3 65 101-170 5-69 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 2.9E-19 1E-23 135.5 7.2 65 101-170 5-69 (80)
8 2cue_A Paired box protein PAX6 99.8 2.7E-19 9.4E-24 136.0 6.3 67 101-172 5-71 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 4.6E-19 1.6E-23 133.8 7.1 66 99-169 9-74 (77)
10 1nk2_P Homeobox protein VND; h 99.8 4.9E-19 1.7E-23 133.6 6.6 67 99-170 5-71 (77)
11 2dmt_A Homeobox protein BARH-l 99.8 3.8E-19 1.3E-23 135.2 5.6 65 99-168 13-77 (80)
12 2da3_A Alpha-fetoprotein enhan 99.8 3E-19 1E-23 135.2 5.0 65 99-168 13-77 (80)
13 1b8i_A Ultrabithorax, protein 99.8 3.2E-19 1.1E-23 136.1 4.6 72 92-168 9-80 (81)
14 2dmu_A Homeobox protein goosec 99.8 6.1E-19 2.1E-23 130.6 5.6 62 102-168 6-67 (70)
15 2cra_A Homeobox protein HOX-B1 99.7 3.4E-19 1.2E-23 132.1 3.7 63 101-168 5-67 (70)
16 2da2_A Alpha-fetoprotein enhan 99.7 4.1E-19 1.4E-23 131.4 3.9 64 100-168 4-67 (70)
17 2vi6_A Homeobox protein nanog; 99.7 3.1E-19 1.1E-23 129.2 3.1 60 103-167 3-62 (62)
18 2da1_A Alpha-fetoprotein enhan 99.7 4.5E-19 1.5E-23 131.2 4.0 63 101-168 5-67 (70)
19 2h1k_A IPF-1, pancreatic and d 99.7 6.9E-19 2.3E-23 127.8 4.8 60 103-167 3-62 (63)
20 1zq3_P PRD-4, homeotic bicoid 99.7 1.1E-18 3.8E-23 128.7 5.8 63 103-170 2-64 (68)
21 1fjl_A Paired protein; DNA-bin 99.7 1.1E-18 3.7E-23 132.9 5.7 64 100-168 15-78 (81)
22 2kt0_A Nanog, homeobox protein 99.7 8.8E-19 3E-23 134.0 5.1 65 99-168 18-82 (84)
23 2hdd_A Protein (engrailed home 99.7 7.3E-19 2.5E-23 126.8 4.2 58 103-165 3-60 (61)
24 1ahd_P Antennapedia protein mu 99.7 8.3E-19 2.8E-23 129.4 4.5 62 103-169 2-63 (68)
25 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-18 3.8E-23 124.4 4.7 57 104-165 1-57 (58)
26 2l7z_A Homeobox protein HOX-A1 99.7 1.3E-18 4.6E-23 130.0 5.1 65 100-169 4-68 (73)
27 2e1o_A Homeobox protein PRH; D 99.7 1.8E-18 6.1E-23 128.2 5.6 62 102-168 6-67 (70)
28 2da4_A Hypothetical protein DK 99.7 8E-19 2.7E-23 133.3 3.6 66 99-169 4-73 (80)
29 3a01_A Homeodomain-containing 99.7 2.5E-18 8.7E-23 134.5 6.6 67 99-170 13-79 (93)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 1.5E-18 5E-23 128.0 4.8 62 103-169 2-63 (68)
31 2djn_A Homeobox protein DLX-5; 99.7 7E-19 2.4E-23 130.4 2.9 63 101-168 5-67 (70)
32 1jgg_A Segmentation protein EV 99.7 1.7E-18 5.7E-23 124.5 4.6 58 104-166 2-59 (60)
33 1bw5_A ISL-1HD, insulin gene e 99.7 9.7E-19 3.3E-23 128.1 3.2 61 103-168 3-63 (66)
34 1yz8_P Pituitary homeobox 2; D 99.7 1E-18 3.4E-23 128.8 3.2 64 102-170 2-65 (68)
35 2cuf_A FLJ21616 protein; homeo 99.7 4E-18 1.4E-22 133.6 6.6 64 101-169 5-83 (95)
36 1wh5_A ZF-HD homeobox family p 99.7 2.3E-18 7.7E-23 131.4 4.2 62 99-165 13-78 (80)
37 2k40_A Homeobox expressed in E 99.7 2.3E-18 7.8E-23 126.4 4.1 61 104-169 2-62 (67)
38 2r5y_A Homeotic protein sex co 99.7 2E-18 6.8E-23 133.4 3.6 63 100-167 25-87 (88)
39 2m0c_A Homeobox protein arista 99.7 3.2E-18 1.1E-22 127.9 4.5 65 100-169 6-70 (75)
40 3a02_A Homeobox protein arista 99.7 2.6E-18 8.9E-23 123.5 3.6 58 106-168 2-59 (60)
41 3rkq_A Homeobox protein NKX-2. 99.7 4.1E-18 1.4E-22 121.0 4.5 57 103-164 2-58 (58)
42 2ecc_A Homeobox and leucine zi 99.7 5.4E-18 1.8E-22 128.2 5.2 62 106-172 6-67 (76)
43 2hi3_A Homeodomain-only protei 99.7 7.8E-18 2.7E-22 125.8 6.0 61 104-169 3-64 (73)
44 2da6_A Hepatocyte nuclear fact 99.7 1.3E-17 4.4E-22 132.6 7.3 72 100-172 3-91 (102)
45 1akh_A Protein (mating-type pr 99.7 3.8E-18 1.3E-22 122.9 3.3 59 101-164 3-61 (61)
46 1b72_A Protein (homeobox prote 99.7 6.6E-18 2.3E-22 132.8 4.9 64 101-169 32-95 (97)
47 1uhs_A HOP, homeodomain only p 99.7 1.1E-17 3.8E-22 124.5 5.8 62 104-169 2-63 (72)
48 1wh7_A ZF-HD homeobox family p 99.7 4.4E-18 1.5E-22 129.9 3.6 61 99-165 13-78 (80)
49 3a03_A T-cell leukemia homeobo 99.7 7.3E-18 2.5E-22 119.7 4.3 54 108-166 2-55 (56)
50 2ecb_A Zinc fingers and homeob 99.7 1.5E-17 5E-22 129.5 6.1 57 109-170 17-73 (89)
51 1b72_B Protein (PBX1); homeodo 99.7 7.9E-18 2.7E-22 129.5 4.1 62 104-170 2-66 (87)
52 2dn0_A Zinc fingers and homeob 99.7 7.8E-18 2.7E-22 126.7 3.6 62 103-169 8-69 (76)
53 2da5_A Zinc fingers and homeob 99.7 1.6E-17 5.3E-22 124.9 5.1 60 105-169 9-68 (75)
54 2ly9_A Zinc fingers and homeob 99.7 1.3E-17 4.5E-22 124.6 4.6 62 102-168 5-66 (74)
55 3nar_A ZHX1, zinc fingers and 99.7 1.1E-17 3.7E-22 131.5 3.6 66 99-169 21-86 (96)
56 1puf_B PRE-B-cell leukemia tra 99.7 2.5E-17 8.5E-22 122.8 5.0 61 104-169 2-65 (73)
57 2dmp_A Zinc fingers and homeob 99.7 5.6E-17 1.9E-21 125.9 6.0 58 108-170 18-75 (89)
58 1x2n_A Homeobox protein pknox1 99.7 5.5E-17 1.9E-21 121.0 5.7 64 101-168 5-70 (73)
59 2dmn_A Homeobox protein TGIF2L 99.7 1.2E-16 4.2E-21 122.4 7.2 65 102-170 6-72 (83)
60 1du6_A PBX1, homeobox protein 99.7 2.3E-17 7.9E-22 119.9 2.7 58 103-165 3-63 (64)
61 1ic8_A Hepatocyte nuclear fact 99.7 6.3E-18 2.1E-22 148.9 -1.1 141 11-165 29-193 (194)
62 1lfb_A Liver transcription fac 99.6 2.9E-17 9.8E-22 130.2 1.6 70 99-169 5-91 (99)
63 1wi3_A DNA-binding protein SAT 99.6 1.3E-16 4.4E-21 117.7 4.5 61 99-164 3-64 (71)
64 1k61_A Mating-type protein alp 99.6 1.6E-16 5.5E-21 114.0 4.2 57 106-166 1-59 (60)
65 2cqx_A LAG1 longevity assuranc 99.6 5.9E-17 2E-21 121.1 1.8 59 104-167 9-68 (72)
66 3nau_A Zinc fingers and homeob 99.6 2.3E-16 7.8E-21 115.9 3.7 52 111-167 12-63 (66)
67 2l9r_A Homeobox protein NKX-3. 99.6 1.5E-16 5.1E-21 118.2 2.1 57 108-169 9-65 (69)
68 1mnm_C Protein (MAT alpha-2 tr 99.6 4.3E-16 1.5E-20 120.0 4.8 59 102-165 26-87 (87)
69 2e19_A Transcription factor 8; 99.6 3.7E-16 1.3E-20 114.3 2.7 54 107-165 7-60 (64)
70 1le8_B Mating-type protein alp 99.6 7.5E-16 2.6E-20 117.8 4.2 59 105-168 4-65 (83)
71 2d5v_A Hepatocyte nuclear fact 99.6 7.9E-16 2.7E-20 131.5 4.3 64 100-168 94-157 (164)
72 1x2m_A LAG1 longevity assuranc 99.6 3.6E-16 1.2E-20 114.5 1.4 51 112-166 9-59 (64)
73 3k2a_A Homeobox protein MEIS2; 99.5 9.6E-15 3.3E-19 107.5 3.0 56 109-169 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 9.5E-14 3.3E-18 124.0 5.8 64 99-163 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 2.3E-13 8E-18 100.7 3.1 46 112-162 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 5.1E-12 1.7E-16 98.0 5.6 59 108-170 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.2 5E-12 1.7E-16 119.4 1.7 56 104-164 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 5.3E-09 1.8E-13 68.2 1.2 23 150-172 1-23 (37)
79 2ys9_A Homeobox and leucine zi 91.5 0.063 2.2E-06 39.3 1.4 38 115-157 18-55 (70)
80 1hlv_A CENP-B, major centromer 59.3 8.6 0.00029 29.7 3.8 49 106-162 4-52 (131)
81 2glo_A Brinker CG9653-PA; prot 57.7 7.5 0.00026 26.2 2.8 45 107-157 3-47 (59)
82 2rgt_A Fusion of LIM/homeobox 56.3 0.18 6.3E-06 42.0 -6.9 30 101-131 134-163 (169)
83 3hug_A RNA polymerase sigma fa 55.7 7.4 0.00025 28.5 2.7 49 110-168 38-86 (92)
84 2x7l_M HIV REV; nuclear export 55.3 7.8 0.00027 30.7 2.9 37 116-171 16-52 (115)
85 2elh_A CG11849-PA, LD40883P; s 53.2 8.9 0.00031 27.9 2.8 44 104-157 17-60 (87)
86 2o8x_A Probable RNA polymerase 47.3 9.5 0.00032 25.8 2.0 47 109-165 15-61 (70)
87 1jko_C HIN recombinase, DNA-in 44.7 7.2 0.00025 24.4 1.0 42 110-161 6-47 (52)
88 3lph_A Protein REV; helix-loop 42.3 13 0.00043 27.1 2.0 37 115-170 18-54 (72)
89 1tc3_C Protein (TC3 transposas 41.7 14 0.00048 22.5 2.0 39 109-157 5-43 (51)
90 3mzy_A RNA polymerase sigma-H 37.3 18 0.00062 28.0 2.5 48 109-167 109-156 (164)
91 1s7o_A Hypothetical UPF0122 pr 36.3 21 0.00071 27.6 2.6 48 109-166 22-69 (113)
92 1p4w_A RCSB; solution structur 34.3 29 0.00099 26.1 3.1 45 107-162 32-76 (99)
93 1ku3_A Sigma factor SIGA; heli 31.1 28 0.00096 24.0 2.4 50 109-164 10-59 (73)
94 2jn6_A Protein CGL2762, transp 29.8 25 0.00084 25.7 2.0 43 107-157 3-45 (97)
95 4ich_A Transcriptional regulat 29.8 6.9 0.00024 34.6 -1.4 39 117-161 128-166 (311)
96 1fi6_A EH domain protein REPS1 29.6 26 0.00087 25.3 2.0 45 108-156 1-49 (92)
97 1xsv_A Hypothetical UPF0122 pr 29.6 27 0.00093 26.8 2.3 48 110-167 26-73 (113)
98 3i5g_B Myosin regulatory light 28.8 94 0.0032 24.3 5.5 40 106-149 6-49 (153)
99 2p7v_B Sigma-70, RNA polymeras 28.3 21 0.00072 24.3 1.3 50 109-164 5-54 (68)
100 2lv7_A Calcium-binding protein 28.3 63 0.0022 23.8 4.1 47 106-156 26-78 (100)
101 3c57_A Two component transcrip 27.8 30 0.001 25.5 2.1 47 108-165 26-72 (95)
102 2wl8_A Peroxisomal biogenesis 26.2 65 0.0022 25.8 3.9 27 41-67 51-77 (126)
103 1or7_A Sigma-24, RNA polymeras 25.9 34 0.0012 27.4 2.4 47 110-166 141-187 (194)
104 2rnj_A Response regulator prot 25.6 31 0.0011 25.0 1.8 46 108-164 28-73 (91)
105 1fse_A GERE; helix-turn-helix 24.9 39 0.0013 22.8 2.2 46 107-163 9-54 (74)
106 1tty_A Sigma-A, RNA polymerase 24.6 32 0.0011 24.8 1.7 50 109-164 18-67 (87)
107 1rp3_A RNA polymerase sigma fa 23.6 40 0.0014 27.8 2.4 48 109-166 187-234 (239)
108 1je8_A Nitrate/nitrite respons 23.4 26 0.00088 25.1 1.0 46 108-164 20-65 (82)
109 2qko_A Possible transcriptiona 23.3 25 0.00085 28.4 1.0 44 115-164 34-77 (215)
110 1c07_A Protein (epidermal grow 23.2 29 0.00098 25.2 1.3 45 108-156 2-50 (95)
111 3dcf_A Transcriptional regulat 21.7 40 0.0014 26.8 1.9 41 115-161 37-77 (218)
112 1iuf_A Centromere ABP1 protein 21.2 95 0.0033 24.5 4.1 51 104-158 6-59 (144)
113 1pdn_C Protein (PRD paired); p 20.4 1.9E+02 0.0066 20.9 5.6 44 109-157 75-125 (128)
114 2iai_A Putative transcriptiona 20.3 58 0.002 26.7 2.7 42 114-161 35-76 (230)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=3.4e-37 Score=265.39 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q 022926 6 IREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRL 85 (290)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~~~~sg~~~ 85 (290)
..+|||+||++||||||+|||||++||+++|.|||++|++++|++|+++..+++++|+..+.+.+|+.............
T Consensus 11 ~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~ 90 (164)
T 2xsd_C 11 SSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNL 90 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------
T ss_pred chhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999998776544211111
Q ss_pred CCcccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 86 ~~~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
++ . ...++.||+||.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 91 -----~~---~-~~~~~~rr~Rt~ft~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 91 -----DK---I-AAQGRKRKKRTSIEVGVKGALESHFLK-CPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------------------------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTB
T ss_pred -----cc---c-cccccCCCCceeccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhh
Confidence 11 1 133466789999999999999999999 7999999999999999 99999999999999999999
Q ss_pred Hhh
Q 022926 166 KQL 168 (290)
Q Consensus 166 ~~~ 168 (290)
..+
T Consensus 157 ~~~ 159 (164)
T 2xsd_C 157 MTP 159 (164)
T ss_dssp SCC
T ss_pred ccC
Confidence 765
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=4.6e-37 Score=262.15 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=130.0
Q ss_pred cchhHHHHHHHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 022926 2 EWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAA 81 (290)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~~~~s 81 (290)
+=+.+.+|||+||++|||+||+|||||+|||+++|.|||++|++++||+|+++..+|++||+..+.+.+|+.........
T Consensus 4 d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~ 83 (155)
T 3l1p_A 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL 83 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCc
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999776532110
Q ss_pred CCCCCCcccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhh
Q 022926 82 GGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (290)
Q Consensus 82 g~~~~~~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRa 161 (290)
. ..+.+.. ..+++||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+
T Consensus 84 ~-----~~~~~~~----~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~ 149 (155)
T 3l1p_A 84 Q-----EISKSET----LVQARKRKRTSIENRVRWSLETMFLK-SPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQ 149 (155)
T ss_dssp H-----HSSCC-------CCCSCCCCCCCCHHHHHHHHTTTTT-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHH
T ss_pred c-----ccccccc----cccCCCCCCcccCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHc----CCChhheeeccccccc
Confidence 0 0001100 11356778999999999999999999 7999999999999999 9999999999999999
Q ss_pred HHHHH
Q 022926 162 RSKRK 166 (290)
Q Consensus 162 K~Kr~ 166 (290)
|+||.
T Consensus 150 k~Kr~ 154 (155)
T 3l1p_A 150 KGKRS 154 (155)
T ss_dssp HHHC-
T ss_pred cccCC
Confidence 99984
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=7.1e-37 Score=258.70 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=122.9
Q ss_pred HHHHHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q 022926 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGN 87 (290)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~~~~sg~~~~~ 87 (290)
+|||+||++||||||+|||||+|||+++|.+||+++|+++|++|+++..++++||+..+.+.+|+........ .
T Consensus 3 ~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~--~---- 76 (146)
T 1au7_A 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGA--L---- 76 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccC--c----
Confidence 7899999999999999999999999999999999999999999999999999999999999999887764431 0
Q ss_pred cccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 88 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 88 ~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
+.+ ..+..++.||.||.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||+
T Consensus 77 --~~~---~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 77 --YNE---KVGANERKRKRRTTISIAAKDALERHFGE-HSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred --cCc---ccCCCCCCCCCCcCccHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 011 11134456788999999999999999999 7999999999999999 999999999999999999985
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=253.49 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=129.3
Q ss_pred HHHHHHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 022926 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (290)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~~~~sg~~~~ 86 (290)
.||+++||++||||||+|||||++||+++|.+||+++|+++|++|+++..++++||+..+.+.+|+.........+....
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~ 82 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNL 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999987765432222111
Q ss_pred CcccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 87 ~~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
... ..+...+.||.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 83 ~~~------~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 83 MEF------VGGEPSKKRKRRTSFTPQAIEALNAYFEK-NPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHH------HCSSCCCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred ccc------CCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 111 11133466789999999999999999999 7999999999999999 99999999999999999987
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=1.9e-34 Score=247.01 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=122.0
Q ss_pred HHHHHHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 022926 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (290)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~~~~sg~~~~ 86 (290)
-+||++||..|+++|+++||+|++||+++|.|||+++++++|++|+++..++++||+..+.+.+||.............+
T Consensus 6 ~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~ 85 (160)
T 1e3o_C 6 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLS 85 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999987664322111111
Q ss_pred CcccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 87 ~~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
...+....... +..+.||.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+||.
T Consensus 86 s~~~~~~~~~~-~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 86 SPSALNSPGIE-GLSRRRKKRTSIETNIRVALEKSFME-NQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------------------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCCCCCC-CCCCCCcCccccCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 11111101111 33467889999999999999999999 7999999999999999 999999999999999999984
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.8e-19 Score=136.92 Aligned_cols=65 Identities=32% Similarity=0.541 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
++.+|.|+.|+..|+.+||.+|.. ++||+..+|++||..| +|++.+|+|||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 456889999999999999999999 6999999999999999 9999999999999999999977653
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=135.51 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
...+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI-NHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHH
Confidence 356789999999999999999999 7999999999999999 9999999999999999999987653
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.7e-19 Score=135.96 Aligned_cols=67 Identities=25% Similarity=0.450 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhhcc
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (290)
...+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER-THYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 345788999999999999999999 7999999999999999 999999999999999999998876543
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=4.6e-19 Score=133.76 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
+.+..+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLF-NMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 45567889999999999999999999 6999999999999999 999999999999999999998764
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=4.9e-19 Score=133.62 Aligned_cols=67 Identities=27% Similarity=0.270 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
..++.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ-QRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 45567889999999999999999999 7999999999999999 9999999999999999999987753
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=135.18 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..++.+|.|+.|+..|+.+||.+|.. ++||+..+|++||..| +|++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEK-QKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 34567889999999999999999999 7999999999999999 99999999999999999998654
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=135.25 Aligned_cols=65 Identities=31% Similarity=0.449 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..++.+|.||.|+.+|+.+||.+|.. ++||+..++++||..| +|++.+|+|||||||+|+||.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL-DSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 44567889999999999999999999 6999999999999999 99999999999999999998654
No 13
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=3.2e-19 Score=136.05 Aligned_cols=72 Identities=29% Similarity=0.409 Sum_probs=55.9
Q ss_pred CCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 92 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 92 p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
|.+...+.....+|.|+.|+..|+.+||..|.. ++||+..+|++||..| ||++++|+|||||||+|+||..+
T Consensus 9 p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 9 PWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp TTCC-----------CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CccccCCCCCCCCCCCcccCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 333333344566889999999999999999999 7999999999999999 99999999999999999998654
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-19 Score=130.58 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..+|.|+.|+..|+.+||.+|.. ++||+..++++||..| +|++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 45788999999999999999999 7999999999999999 99999999999999999999655
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.4e-19 Score=132.05 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
...+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAA-NKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 356788999999999999999999 7999999999999999 99999999999999999998654
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-19 Score=131.40 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..+.++.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDA-NAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 3456789999999999999999999 7999999999999999 99999999999999999998654
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=3.1e-19 Score=129.17 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||.+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK-QKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 4788999999999999999999 7999999999999999 9999999999999999999853
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-19 Score=131.23 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
...+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDI-NNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 456789999999999999999999 7999999999999999 99999999999999999999655
No 19
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=6.9e-19 Score=127.85 Aligned_cols=60 Identities=33% Similarity=0.426 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF-NKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 4788999999999999999999 7999999999999999 9999999999999999999863
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=128.65 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhccc
Confidence 4788999999999999999999 6999999999999999 9999999999999999999987654
No 21
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.74 E-value=1.1e-18 Score=132.89 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
.++.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||+..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFER-TQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999 7999999999999999 99999999999999999999765
No 22
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-19 Score=134.04 Aligned_cols=65 Identities=31% Similarity=0.372 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
...+.+|.||.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQR-QKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999 6999999999999999 99999999999999999998765
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.74 E-value=7.3e-19 Score=126.82 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
.+|.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE-NRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999 7999999999999999 99999999999999999997
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=8.3e-19 Score=129.44 Aligned_cols=62 Identities=31% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
++|.|+.||..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhccc
Confidence 4788999999999999999999 6999999999999999 999999999999999999997764
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=124.42 Aligned_cols=57 Identities=40% Similarity=0.496 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
||.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ-KQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999 7999999999999999 99999999999999999987
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.3e-18 Score=130.03 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
....+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYAT-NKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3456889999999999999999999 7999999999999999 999999999999999999997654
No 27
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.8e-18 Score=128.18 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..++.|+.|+..|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET-QKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 45678999999999999999999 7999999999999999 99999999999999999999765
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8e-19 Score=133.28 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGT----GTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n----~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
+.++.+|.||.|+.+|+.+||.+|.. + +||+..+|++||..| +|++.+|+|||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 44567889999999999999999999 8 999999999999999 999999999999999999996543
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=2.5e-18 Score=134.46 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
...+.+|.||.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK-QKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHH
Confidence 34456789999999999999999999 6999999999999999 9999999999999999999987654
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=128.05 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
++|.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ-QKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhH
Confidence 4778999999999999999999 6999999999999999 999999999999999999997764
No 31
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7e-19 Score=130.39 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
...+|.|+.|+..|+.+||.+|.. ++||+..++++||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK-TQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 356788999999999999999999 7999999999999999 99999999999999999998654
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=124.52 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
||.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK-ENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 578999999999999999999 7999999999999999 999999999999999999985
No 33
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=9.7e-19 Score=128.07 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
.+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA-NPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 5789999999999999999999 7999999999999999 99999999999999999998653
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=1e-18 Score=128.82 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR-NRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT-CSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 35788999999999999999999 7999999999999999 9999999999999999999987653
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4e-18 Score=133.62 Aligned_cols=64 Identities=31% Similarity=0.521 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCC---------------CCccceeeccchhhhHHHH
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------ISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~---------------Ls~~qV~vWFQNRRaK~Kr 165 (290)
.+.+|.|+.|+..|+.+||.+|.. ++||+..+|++||..| + |++.+|++||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999 7999999999999999 8 9999999999999999999
Q ss_pred Hhhh
Q 022926 166 KQLV 169 (290)
Q Consensus 166 ~~~~ 169 (290)
+...
T Consensus 80 ~~~~ 83 (95)
T 2cuf_A 80 RANI 83 (95)
T ss_dssp HHHC
T ss_pred Hhhc
Confidence 8875
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=2.3e-18 Score=131.36 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
+.++.||.||.||.+|+.+||..|+. + +||+..+|++||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999998 6 899999999999999 99999999999999999875
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=126.45 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
||.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 678999999999999999999 7999999999999999 999999999999999999987654
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=2e-18 Score=133.45 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 3456889999999999999999999 7999999999999999 9999999999999999999864
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=127.88 Aligned_cols=65 Identities=31% Similarity=0.482 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
..+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQK-THYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 3456788999999999999999999 6999999999999999 999999999999999999997654
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=2.6e-18 Score=123.53 Aligned_cols=58 Identities=31% Similarity=0.518 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
+|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999 7999999999999999 99999999999999999998764
No 41
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=4.1e-18 Score=121.01 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ-QRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 4678999999999999999999 6999999999999999 9999999999999999985
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=5.4e-18 Score=128.20 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhhcc
Q 022926 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (290)
.|+.||.+|+.+||..|.. ++||+..+|++||..| ||++++|+|||||||+|+|+.......
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w~~ 67 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKWFR 67 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHHHH
Confidence 4677999999999999999 7999999999999999 999999999999999999998765433
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=7.8e-18 Score=125.76 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 104 ARQRWTPTPVQLQILESIFD-QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~-~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
++.|+.|+..|+.+||..|. . ++||+..+|.+||..| ||++++|+|||||||+|+||....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccC
Confidence 56799999999999999999 5 5999999999999999 999999999999999999998754
No 44
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=132.63 Aligned_cols=72 Identities=33% Similarity=0.567 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh-------------cC----CCCccceeeccchhhhH
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------HG----QISETNVYNWFQNRRAR 162 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~-------------~~----~Ls~~qV~vWFQNRRaK 162 (290)
.++.||.|+.|++.|+.+||.+|+. ++||+..+|++||..|.. |+ .|++.+|+|||||||+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~-~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 3456889999999999999999999 799999999999999932 33 79999999999999999
Q ss_pred HHHHhhhhcc
Q 022926 163 SKRKQLVSSS 172 (290)
Q Consensus 163 ~Kr~~~~~~~ 172 (290)
+|++++....
T Consensus 82 ~kr~~~~~~~ 91 (102)
T 2da6_A 82 EAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHS
T ss_pred HHHhhHhhhc
Confidence 9998876543
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=3.8e-18 Score=122.85 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
++.++.|+.|+..|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999 7999999999999999 9999999999999999976
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=6.6e-18 Score=132.84 Aligned_cols=64 Identities=33% Similarity=0.393 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
...++.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF-NKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 456788999999999999999999 7999999999999999 999999999999999999998764
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=124.54 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
.+.|+.|+..|+.+||..|...++||+..+|.+||..| +|++++|+|||||||+|+|+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccC
Confidence 45789999999999999999425999999999999999 999999999999999999997754
No 48
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=4.4e-18 Score=129.85 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQ-----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~-----~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
...+.||.||.||.+|+.+|| .|.. + +||+..+|++||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7988 6 999999999999999 99999999999999999875
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=7.3e-18 Score=119.72 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
|.|+..|+.+||..|.. ++||+..+|.+||..| ||++++|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR-QKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh-cCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 67999999999999999 7999999999999999 999999999999999999985
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=129.46 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
.||.+||.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|||++.+..
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 7899999999999999 7999999999999999 9999999999999999999866543
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=7.9e-18 Score=129.52 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
||.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 77 7999999999999999 9999999999999999999976554
No 52
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-18 Score=126.71 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
+.+.|+.||.+|+.+||.+|.. ++||+..+|++||..| +|++++|+|||||||+|+||....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR-NQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-SSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 4556899999999999999999 6999999999999999 999999999999999999996653
No 53
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=124.91 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
++|+.||..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+..+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ-NPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhc
Confidence 45677999999999999999 7999999999999999 999999999999999999997654
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=124.55 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..++.|+.|+..|+.+||..|.. ++||+..++++||..| +|++.+|+|||||||+|+||.+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK-NQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCc
Confidence 34678999999999999999999 6999999999999999 99999999999999999998665
No 55
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=131.47 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
+....+|.|+.|+..|+.+||..|.. ++||+..+|++||..| +|++++|+|||||||+|+||.+..
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVR-TQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhccc
Confidence 34456788999999999999999999 6999999999999999 999999999999999999997643
No 56
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=2.5e-17 Score=122.83 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
||.|+.|+..|+.+||.+| .. ++||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~-~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcc-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999 77 7999999999999999 999999999999999999986654
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-17 Score=125.88 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
..||..||.+||..|.. ++||+..+|++||..| +|++++|+|||||||+|+|+..+..
T Consensus 18 k~~t~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK-SSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhh
Confidence 34899999999999999 7999999999999999 9999999999999999999877654
No 58
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=5.5e-17 Score=120.95 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 101 KISARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~--~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
++.++.|+.|+..|+.+||.+|.. .++||+..++++||..| +|++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhcccccc
Confidence 456788999999999999999975 25999999999999999 99999999999999999998765
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=122.38 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=58.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 102 ISARQRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~--n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
+.+++|+.|+..|+.+||.+|... ++||+..++++||..| +|++.||+|||||||+|+|+.....
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 457789999999999999999871 4999999999999999 9999999999999999999876543
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-17 Score=119.90 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
.++.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 77 7999999999999999 99999999999999999986
No 61
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=6.3e-18 Score=148.88 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=87.8
Q ss_pred HHHHhhhhhhhhccCCcCCCCCccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-h-hh-cCCCCCC
Q 022926 11 QQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQD-L-AA-AGGRLGN 87 (290)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~~~~~~k~ls~~~~-~-~~-sg~~~~~ 87 (290)
..++...+-.+++.|++|.++.-.+| +|+..|+++..........+.. .+..|+...+. . .. +....+.
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~kra--aly~W~~~~~~~i~~~~~~~~~~~ 100 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQKRA--ALYTWYVRKQREVAQQFTHAGQGG 100 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHHHH--HHHHHHHHHTTTTHHHHCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCccccccccc--cchhhHHHhhhhhhccccCCCCCC
Confidence 44566777888999999999876554 7888888885433222222211 12233222111 0 00 0000011
Q ss_pred cccCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCC---------------------
Q 022926 88 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ--------------------- 146 (290)
Q Consensus 88 ~~~~p~~~s~~~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~--------------------- 146 (290)
. ..+........++.||.|+.|++.|+.+||+.|.. ++||+..+|++||..| +
T Consensus 101 ~-~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~-~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~ 174 (194)
T 1ic8_A 101 L-IEEPTGDELPTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNL 174 (194)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHH-HCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGC
T ss_pred C-CCCCcccccccccCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----Cchhhccccccccccccccccc
Confidence 1 11111111144667889999999999999999999 7999999999999999 7
Q ss_pred CCccceeeccchhhhHHHH
Q 022926 147 ISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 147 Ls~~qV~vWFQNRRaK~Kr 165 (290)
|++.+|+|||||||+++|.
T Consensus 175 lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 175 VTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CCHHHHHHHHHHHHHHCC-
T ss_pred cCccccchhchhhhhhhhc
Confidence 9999999999999999875
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.64 E-value=2.9e-17 Score=130.18 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhc--------------CC---CCccceeeccchhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH--------------GQ---ISETNVYNWFQNRRA 161 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~--------------~~---Ls~~qV~vWFQNRRa 161 (290)
..++.||.|+.|+..|+.+||..|.. ++||+..+|++||..+... .| |++.+|+|||||||+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 34567889999999999999999999 7999999999999992100 17 999999999999999
Q ss_pred HHHHHhhh
Q 022926 162 RSKRKQLV 169 (290)
Q Consensus 162 K~Kr~~~~ 169 (290)
++|++++.
T Consensus 84 k~k~k~~~ 91 (99)
T 1lfb_A 84 EEAFRHKL 91 (99)
T ss_dssp TTSCCC--
T ss_pred HHHHhchh
Confidence 99876654
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=117.66 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQ-GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~-~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
+.+..+|.||.|+.+||.+|+.+|.. . +||+...|+.||.+| ||++++|+|||||||.--+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 44567899999999999999999999 6 999999999999999 9999999999999998644
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=113.99 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 106 QRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~--n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
+|+.|+..|+.+||.+|... ++||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 36889999999999999982 3999999999999999 999999999999999999873
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=5.9e-17 Score=121.13 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
.+.|..++.+|+.+||..| .. ++||+..+|.+||..| +|++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~-~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV-TKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3456667889999999999 88 7999999999999999 9999999999999999999744
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=115.92 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 111 TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 111 t~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
+.+||.+||..|.. ++||+..+|.+||..| ||++++|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~-~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQ-SQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHG-GGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 78999999999999 6999999999999999 9999999999999999999865
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=118.17 Aligned_cols=57 Identities=35% Similarity=0.451 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
...|..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||....
T Consensus 9 ~~~t~~ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH-QKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 46799999999999999 7999999999999999 999999999999999999986653
No 68
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.60 E-value=4.3e-16 Score=120.01 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=54.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 102 ISARQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~---~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
..++.|+.|+..|+.+||.+|.. . +||+..++.+||..| ||++.+|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 34567999999999999999998 6 999999999999999 99999999999999999873
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-16 Score=114.26 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
+..++..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL-NAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 445679999999999999 7999999999999999 99999999999999998776
No 70
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.58 E-value=7.5e-16 Score=117.81 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 105 RQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~---~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
+.|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccccc
Confidence 44666999999999999998 5 999999999999999 99999999999999999998654
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=7.9e-16 Score=131.48 Aligned_cols=64 Identities=33% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 100 ~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
..+.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE-NKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 3456789999999999999999999 7999999999999999 99999999999999999888544
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3.6e-16 Score=114.47 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 112 ~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
+.|+.+||+.|...++||+..+|.+||.+| +|+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 457999999994326999999999999999 999999999999999999863
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=9.6e-15 Score=107.50 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhh
Q 022926 109 TPTPVQLQILESIFD---QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~---~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~ 169 (290)
.|+.+|+.+|+.+|. . ++||+..++.+||..+ ||++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~-~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLT-HPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 8 7999999999999999 999999999999999999986543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.43 E-value=9.5e-14 Score=124.04 Aligned_cols=64 Identities=33% Similarity=0.563 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh-----------------cCCCCccceeeccchhhh
Q 022926 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-----------------HGQISETNVYNWFQNRRA 161 (290)
Q Consensus 99 ~~k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~-----------------~~~Ls~~qV~vWFQNRRa 161 (290)
..++.||.|+.|++.|+.+||.+|.. ++||+..+|++||..|.. ...|++.+|+|||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 55678899999999999999999999 799999999999999831 012899999999999998
Q ss_pred HH
Q 022926 162 RS 163 (290)
Q Consensus 162 K~ 163 (290)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.3e-13 Score=100.74 Aligned_cols=46 Identities=15% Similarity=0.474 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhH
Q 022926 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (290)
Q Consensus 112 ~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK 162 (290)
..|+.+||.+|.. |++|+.+++..||..+ ||++++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~-n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM-NMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 5789999999999 7999999999999999 99999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.26 E-value=5.1e-12 Score=98.04 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 108 WTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~--~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
..|+.+++.+|+.+|.. .++||+..++.+||..+ ||++.||++||+|+|.|.++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999976 25899999999999999 9999999999999999999876543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=5e-12 Score=119.44 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
++.|+.|+..|+..||+.|.. ++||+..+|.+||.+| +|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~-~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 455788999999999999999 7999999999999999 9999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.65 E-value=5.3e-09 Score=68.21 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=19.8
Q ss_pred cceeeccchhhhHHHHHhhhhcc
Q 022926 150 TNVYNWFQNRRARSKRKQLVSSS 172 (290)
Q Consensus 150 ~qV~vWFQNRRaK~Kr~~~~~~~ 172 (290)
+||+|||||||+||||.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998886543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.54 E-value=0.063 Score=39.34 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccc
Q 022926 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (290)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQ 157 (290)
...|+.+|.. .+.+...+...|+.+. +|+-.+|+-||-
T Consensus 18 ~e~L~~Yy~~-hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAA-HQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHH-TCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHH-hcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 3589999999 6899999999999999 999999999995
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=59.27 E-value=8.6 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhH
Q 022926 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK 162 (290)
+|..+|.++...+-..+.. +..+.. .+||..+ |++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~-~g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE-NPDLRK---GEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH-CTTSCH---HHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHH-CCCCcH---HHHHHHh----CCCHHHHHHHHhchhhh
Confidence 5778999998777777755 344443 3789999 99999999998776554
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.71 E-value=7.5 Score=26.18 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccc
Q 022926 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (290)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQ 157 (290)
|..|+.+....+..++.. ..+......++|..+ ||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~--g~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN--DNDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH--CTTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc--CCCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 456888887777555554 233222355899999 999999999975
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.32 E-value=0.18 Score=41.96 Aligned_cols=30 Identities=0% Similarity=-0.172 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCH
Q 022926 101 KISARQRWTPTPVQLQILESIFDQGTGTPSK 131 (290)
Q Consensus 101 k~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~ 131 (290)
++.+|+||.|+..|+.+|+..|+. ++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~-~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA-NPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCC-CCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC-CCCccc
Confidence 356789999999999999999999 799875
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.71 E-value=7.4 Score=28.47 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhh
Q 022926 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (290)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~ 168 (290)
++..+..+|.-.|... +. ..+||..| |++...|+.+...-|.+.|+...
T Consensus 38 L~~~~r~vl~l~~~~g--~s----~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--WS----TAQIATDL----GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 4677778887766552 32 34899999 99999999998876666665443
No 84
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=55.33 E-value=7.8 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhhc
Q 022926 116 QILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (290)
Q Consensus 116 ~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~~ 171 (290)
.++.-+|+. |+||+.. |--.. -.|||.+||.++.+..
T Consensus 16 RiIkiLyQS-NPyP~pe-------------GTRqa-----RRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 16 RLIKFLYQS-NPPPNPE-------------GTRQA-----RRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHS-SCCCCCC-------------CCTTT-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCCCCCC-------------Cchhh-----hHhHHHHHHHHHHHHH
Confidence 455556877 8999873 21111 2699999999887653
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.23 E-value=8.9 Score=27.95 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccc
Q 022926 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQ 157 (290)
++.+..|+.++...+-..+.. ..+ ..+||..+ |++...|+.|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~--g~s----~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD--GES----KASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH--TCC----HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CCC----HHHHHHHH----CcCHHHHHHHHH
Confidence 345667888886555555654 222 44889999 999999999974
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=47.31 E-value=9.5 Score=25.79 Aligned_cols=47 Identities=11% Similarity=-0.083 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
.+++.+..+|.-.|.. .++ ..+||..| |++...|+.+...-+.+-++
T Consensus 15 ~L~~~~r~il~l~~~~--g~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL--GLS----YADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTS--CCC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3678888898887655 232 34899999 99999999888655555443
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=44.73 E-value=7.2 Score=24.44 Aligned_cols=42 Identities=10% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhh
Q 022926 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (290)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRa 161 (290)
++.++...+...+.. . .+ ..+||..| |++...|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~--g-~s---~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEK--G-HP---RQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHT--T-CC---HHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHc--C-CC---HHHHHHHH----CCCHHHHHHHHHHccc
Confidence 455565555555554 2 22 45889999 9999999999975443
No 88
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=42.26 E-value=13 Score=27.14 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHhhhh
Q 022926 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (290)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~~~~ 170 (290)
+.++.-+|+. |+||+.+-- .-| =.|||.+|+..+.+.
T Consensus 18 vRiIkiLyQS-NP~P~p~GT-rqa-----------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQS-NPPPNPEGT-RQA-----------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHT-CCCCCCCSC-HHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCCCCCc-hHH-----------------HHHHHHHHHHHHHHH
Confidence 3455666887 899986311 111 158999999888764
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=41.69 E-value=14 Score=22.53 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccc
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQ 157 (290)
.++..+...+...+.. .+ + ..+||..| +++...|+.|..
T Consensus 5 ~l~~~~~~~i~~~~~~--g~-s---~~~IA~~l----gis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--NV-S---LHEMSRKI----SRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHT--TC-C---HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc--CC-C---HHHHHHHH----CcCHHHHHHHHh
Confidence 4677766555555644 23 2 45889999 999999999874
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=37.34 E-value=18 Score=27.99 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
.+++.+..+|. .|-. .+ ...+||..| |++...|+.+...-|.+.|+.-
T Consensus 109 ~L~~~~r~v~~-~~~~--g~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR--GY----SYREIATIL----SKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT--TC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 4443 23 234899999 9999999998876666655543
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=36.35 E-value=21 Score=27.60 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
.+++.+..+|.-.|... +. ..+||..| |++...|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 36788888888876652 33 34899999 999999999998777666554
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.29 E-value=29 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhH
Q 022926 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (290)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK 162 (290)
...+++.++.+|.-+++- +. .++||..| ++++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s----~~EIA~~L----~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL----VTEIAKKL----NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 456899999999876533 22 25899999 99999999887654444
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.09 E-value=28 Score=24.00 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
.+++.+..+|...|..... ......+||..| |++...|+.|...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~--~~~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG--REHTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4688899999888851000 011234899999 9999999988765555544
No 94
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.81 E-value=25 Score=25.68 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccc
Q 022926 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (290)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQ 157 (290)
|..|+.++....-..+...... ...+||..+ |++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHH----CcCHHHHHHHHH
Confidence 3568887776555455320012 245899999 999999998863
No 95
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=29.76 E-value=6.9 Score=34.59 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhh
Q 022926 117 ILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (290)
Q Consensus 117 ~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRa 161 (290)
.....|.. ..|- .....+||+.. |++...|+.+|.++-.
T Consensus 128 aa~~l~~~-~G~~-~~T~~~IA~~A----Gvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 128 TAWRLIAR-RGYH-NVRIHDIASEL----GTSNATIHYHFPSKKD 166 (311)
T ss_dssp HHHHHHHH-HCGG-GCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHH-cCCc-cCCHHHHHHHh----CCCchhHHHhCCCHHH
Confidence 34445666 3543 34456899999 9999999999999854
No 96
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.63 E-value=26 Score=25.25 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHhhcCCCCccceeecc
Q 022926 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWF 156 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWF 156 (290)
|.++.+++..+..+|.. .+.+.+..+...+...+ +++...+..+|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 56789999999999976 23567777777777777 78776655444
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.57 E-value=27 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHHh
Q 022926 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (290)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~~ 167 (290)
+++.+..+|.-.|... +. ..+||..| |++...|+.+...-|.+.|+..
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888776552 33 34889999 9999999999987776666543
No 98
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.79 E-value=94 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHhhcCCCCc
Q 022926 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISE 149 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~~Ls~ 149 (290)
+|..+|.+|+..|..+|.. .+.+.+..+...+...| |...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCc
Confidence 4567999999999999976 34688888877777777 6544
No 99
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.29 E-value=21 Score=24.30 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
.+++.+..+|.-.|.. ..+ .....++||..| |++...|+.+...-+.|.+
T Consensus 5 ~L~~~er~il~l~~~l-~~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGI-DMN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTT-TSS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHcc-CCC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 4678888999888821 000 012235899999 9999999988764444443
No 100
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.29 E-value=63 Score=23.80 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHhhcCC--CCccceeecc
Q 022926 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQ--ISETNVYNWF 156 (290)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~~--Ls~~qV~vWF 156 (290)
....++.+++..|..+|.. .+.+.+..+...+...+ | +++..|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----g~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----GYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----TCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CCCCCHHHHHHHH
Confidence 4567899999999999976 34689998888888877 6 4566666555
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.77 E-value=30 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHH
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr 165 (290)
..+++.+..+|.-++. .+. ..+||..| +++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~---g~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE---GLT----NKQIADRM----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT---TCC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc---CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 3578999999988643 232 24899999 99999999877655554443
No 102
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=26.21 E-value=65 Score=25.82 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022926 41 KVMTDEQLETLRKQIAVYATICEQLVE 67 (290)
Q Consensus 41 ~~~t~~q~~~lr~qi~~~~~ic~~~~~ 67 (290)
..++.++++|+++|..++..||...-.
T Consensus 51 ~~l~~Ed~~RY~kQ~~lv~~I~~~fE~ 77 (126)
T 2wl8_A 51 ESLPPEQFEKYQEQHSVMCKICEQFEA 77 (126)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999986543
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.93 E-value=34 Score=27.40 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
+++.+..+|.-.|-. .++ ..+||..| |++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~--g~s----~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELD--GLS----YEEIAAIM----DCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTT--CCC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc--CCC----HHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 345555555554443 222 34889999 999999999988666666654
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.57 E-value=31 Score=24.95 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
..+++.+..+|.-++. .+... +||..| +++...|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~~---g~s~~----eIA~~l----~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK---GYSNQ----EIASAS----HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHT---TCCTT----HHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHc---CCCHH----HHHHHH----CcCHHHHHHHHHHHHHHHC
Confidence 3578889999987542 34433 899999 9999999988765554443
No 105
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.93 E-value=39 Score=22.79 Aligned_cols=46 Identities=30% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHH
Q 022926 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (290)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~ 163 (290)
-..+++.+..+|.-++ . .+ ...+||..| |++...|+.+...-+.|.
T Consensus 9 ~~~L~~~e~~il~~~~-~--g~----s~~eIA~~l----~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 9 KPLLTKREREVFELLV-Q--DK----TTKEIASEL----FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 3468899999998843 2 33 234899999 999999988876544443
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.60 E-value=32 Score=24.77 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
.+++.+..+|...|-.... ......+||..| |++...|+.+...-+.|-|
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 3678888888888751000 011234889999 9999999988764444443
No 107
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.56 E-value=40 Score=27.79 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHHHH
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~Kr~ 166 (290)
.+++.+..+|.-.|... ++ ..+||..| |++...|+.+...-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g--~s----~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--LP----AKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--CC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--CC----HHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 35777778887777552 32 34889999 999999999987666666654
No 108
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.38 E-value=26 Score=25.06 Aligned_cols=46 Identities=30% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
..+++.+..+|.-++ . .+ ...+||..| +++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~-~--g~----s~~eIA~~l----~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIA-Q--GL----PNKMIARRL----DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 458899999998843 2 23 234899999 9999999887765554443
No 109
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.33 E-value=25 Score=28.44 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhhHHH
Q 022926 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (290)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRaK~K 164 (290)
+......|.. ..|- .....+||+.. |++...|+.+|.++-.=..
T Consensus 34 l~aa~~lf~~-~G~~-~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAR-EGAR-GLTFRAVDVEA----NVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHH-TCTT-TCCHHHHHHHS----SSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHH-hChh-hccHHHHHHHc----CCCcchHHHhCCCHHHHHH
Confidence 4445556777 4654 44566899999 9999999999999865544
No 110
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.23 E-value=29 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHhhcCCCCccceeecc
Q 022926 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWF 156 (290)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWF 156 (290)
|.++.++...|+.+|.. .+.+.+..+...+...+ +++...|..+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHH
Confidence 45788899999999865 23577777766666666 77766655544
No 111
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=21.71 E-value=40 Score=26.81 Aligned_cols=41 Identities=12% Similarity=0.473 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhh
Q 022926 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (290)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRa 161 (290)
+......|.. ..|- .....+||+.. |++...|+.+|.++-.
T Consensus 37 l~aa~~l~~~-~G~~-~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFRE-KGYY-ATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHH-TCTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHH-cCcc-cCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3445555777 4654 34466899999 9999999999999854
No 112
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=21.19 E-value=95 Score=24.50 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHhhcC--CCCccceeeccch
Q 022926 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHG--QISETNVYNWFQN 158 (290)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~n~yPs~~~r~~LA~~L~~~~--~Ls~~qV~vWFQN 158 (290)
+++|.++|.+|...|-.++ +. ++-.+.. +||.-..... +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~-~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL-QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS-SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh-CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999999999999 55 4544443 4555111112 5788888888754
No 113
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.37 E-value=1.9e+02 Score=20.87 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCC-------CCccceeeccc
Q 022926 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ-------ISETNVYNWFQ 157 (290)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~-------Ls~~qV~vWFQ 157 (290)
.+++++...|..+... ++..+.. +|+..|... | ++...|..|..
T Consensus 75 ~l~~~~~~~i~~~~~~-~~~~s~~---~i~~~l~~~-g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 75 IATPEIENRIEEYKRS-SPGMFSW---EIREKLIRE-GVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp SSCSTHHHHHHHTTTT-CTTCCHH---HHHHHHHHT-SSSCSTTCCCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHh-CcchHHH---HHHHHHHHc-CCccccCCcCHHHHHHHHH
Confidence 5677777777777665 4545544 555555443 4 47777887775
No 114
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.31 E-value=58 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCCCccceeeccchhhh
Q 022926 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (290)
Q Consensus 114 Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~~Ls~~qV~vWFQNRRa 161 (290)
-+......|.. ..|-. ....+||+.. |++...|+..|.++-.
T Consensus 35 Il~aA~~lf~~-~G~~~-~t~~~IA~~A----gvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIE-RGYDG-TSMEHLSKAA----GISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHH-HCTTT-CCHHHHHHHH----TSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHH-cCccc-cCHHHHHHHH----CCChhHHHHhCCCHHH
Confidence 35566677777 36543 3456899999 9999999999999843
Done!