Query 022927
Match_columns 290
No_of_seqs 448 out of 2880
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412 26S proteasome regulat 99.9 1.8E-24 3.8E-29 169.9 8.2 122 161-289 47-170 (226)
2 KOG4412 26S proteasome regulat 99.9 2.5E-24 5.4E-29 169.1 7.3 126 157-289 77-203 (226)
3 PF12796 Ank_2: Ankyrin repeat 99.9 2.8E-21 6E-26 140.2 10.6 89 196-288 1-89 (89)
4 PHA02743 Viral ankyrin protein 99.8 4.4E-21 9.6E-26 155.5 10.2 117 166-289 38-159 (166)
5 PHA02791 ankyrin-like protein; 99.8 6.9E-21 1.5E-25 166.5 11.6 122 160-289 102-225 (284)
6 PHA02859 ankyrin repeat protei 99.8 1.8E-20 3.8E-25 157.6 11.4 120 163-289 64-190 (209)
7 KOG0509 Ankyrin repeat and DHH 99.8 1.1E-20 2.5E-25 173.6 10.5 123 160-289 52-176 (600)
8 PHA02791 ankyrin-like protein; 99.8 2.6E-20 5.7E-25 162.8 11.0 115 160-283 38-153 (284)
9 PHA02875 ankyrin repeat protei 99.8 3.3E-20 7E-25 171.6 11.8 98 191-288 101-198 (413)
10 KOG0502 Integral membrane anky 99.8 3.2E-20 7E-25 150.2 10.0 99 190-288 158-256 (296)
11 KOG0508 Ankyrin repeat protein 99.8 3.6E-21 7.8E-26 170.9 4.8 120 160-286 92-211 (615)
12 KOG0509 Ankyrin repeat and DHH 99.8 1.7E-20 3.6E-25 172.5 8.7 123 160-288 86-208 (600)
13 PHA02878 ankyrin repeat protei 99.8 4.4E-20 9.4E-25 173.9 11.4 116 166-288 148-265 (477)
14 PLN03192 Voltage-dependent pot 99.8 9.4E-20 2E-24 181.6 10.4 127 156-289 529-686 (823)
15 PHA03095 ankyrin-like protein; 99.8 1.9E-19 4.1E-24 169.1 11.8 123 160-289 22-150 (471)
16 PHA02875 ankyrin repeat protei 99.8 1.6E-19 3.4E-24 167.0 10.8 122 159-287 109-231 (413)
17 PHA02874 ankyrin repeat protei 99.8 2.6E-19 5.6E-24 166.7 11.9 118 165-289 104-221 (434)
18 PHA02878 ankyrin repeat protei 99.8 2.5E-19 5.5E-24 168.7 10.7 125 156-289 172-298 (477)
19 PHA02798 ankyrin-like protein; 99.8 2.4E-19 5.3E-24 169.3 10.3 120 162-288 48-178 (489)
20 PHA02859 ankyrin repeat protei 99.8 4.4E-19 9.6E-24 149.1 10.0 121 159-289 28-156 (209)
21 PHA02946 ankyin-like protein; 99.8 5.9E-19 1.3E-23 164.3 11.2 118 164-289 51-171 (446)
22 PHA02736 Viral ankyrin protein 99.8 3.5E-19 7.5E-24 142.6 8.2 96 191-286 54-154 (154)
23 KOG0512 Fetal globin-inducing 99.8 5.6E-19 1.2E-23 138.1 9.0 94 195-288 66-160 (228)
24 PHA02884 ankyrin repeat protei 99.8 1.5E-18 3.3E-23 152.0 12.6 117 160-279 41-158 (300)
25 PHA02716 CPXV016; CPX019; EVM0 99.8 4.8E-19 1.1E-23 171.3 10.3 120 163-289 190-350 (764)
26 PHA02741 hypothetical protein; 99.8 1.2E-18 2.7E-23 141.6 10.9 89 194-282 62-156 (169)
27 PHA02795 ankyrin-like protein; 99.8 5.1E-19 1.1E-23 161.1 9.5 131 157-288 154-292 (437)
28 PHA02874 ankyrin repeat protei 99.8 1.3E-18 2.8E-23 162.0 11.9 129 154-289 37-188 (434)
29 PHA03100 ankyrin repeat protei 99.8 8.5E-19 1.8E-23 165.1 10.8 118 164-288 155-280 (480)
30 PHA03100 ankyrin repeat protei 99.8 9.5E-19 2.1E-23 164.8 10.2 123 159-288 80-206 (480)
31 PHA02741 hypothetical protein; 99.8 1.7E-18 3.8E-23 140.8 8.6 103 180-289 16-130 (169)
32 PHA02716 CPXV016; CPX019; EVM0 99.8 2E-18 4.3E-23 167.1 10.5 121 162-289 152-315 (764)
33 PHA02743 Viral ankyrin protein 99.8 3.2E-18 6.8E-23 138.8 9.7 96 194-289 22-126 (166)
34 PHA02884 ankyrin repeat protei 99.8 3.9E-18 8.5E-23 149.4 10.4 95 195-289 36-135 (300)
35 KOG0195 Integrin-linked kinase 99.8 2.4E-18 5.3E-23 144.6 8.6 99 191-289 33-131 (448)
36 PHA02795 ankyrin-like protein; 99.8 3.6E-18 7.9E-23 155.5 10.2 119 162-289 128-252 (437)
37 PHA03095 ankyrin-like protein; 99.8 3E-18 6.5E-23 161.0 9.7 116 163-285 200-317 (471)
38 KOG0508 Ankyrin repeat protein 99.7 3.4E-18 7.4E-23 152.1 8.1 133 156-288 46-180 (615)
39 PHA02989 ankyrin repeat protei 99.7 7.7E-18 1.7E-22 159.3 10.9 118 164-288 87-215 (494)
40 PHA02989 ankyrin repeat protei 99.7 7.5E-18 1.6E-22 159.4 10.6 120 163-289 122-287 (494)
41 PHA02876 ankyrin repeat protei 99.7 8.3E-18 1.8E-22 165.0 11.2 119 164-289 354-474 (682)
42 PHA02730 ankyrin-like protein; 99.7 6.5E-18 1.4E-22 160.8 9.9 119 163-289 357-493 (672)
43 KOG4177 Ankyrin [Cell wall/mem 99.7 8E-18 1.7E-22 166.3 9.9 109 169-284 524-632 (1143)
44 PF01363 FYVE: FYVE zinc finge 99.7 5.1E-19 1.1E-23 121.9 1.0 59 4-62 8-68 (69)
45 PHA02798 ankyrin-like protein; 99.7 2.2E-17 4.7E-22 156.0 10.8 117 165-288 89-216 (489)
46 KOG4214 Myotrophin and similar 99.7 2.1E-17 4.6E-22 116.1 7.5 92 195-287 5-96 (117)
47 KOG4177 Ankyrin [Cell wall/mem 99.7 1.1E-17 2.5E-22 165.2 8.3 131 152-289 474-604 (1143)
48 PHA02917 ankyrin-like protein; 99.7 3.3E-17 7.1E-22 158.7 11.0 115 167-288 14-168 (661)
49 KOG0510 Ankyrin repeat protein 99.7 1.5E-17 3.2E-22 156.4 7.6 124 159-289 280-408 (929)
50 PHA02946 ankyin-like protein; 99.7 3.4E-17 7.3E-22 152.6 9.5 94 194-289 143-240 (446)
51 KOG0512 Fetal globin-inducing 99.7 3.2E-17 6.8E-22 128.4 7.2 121 161-288 72-195 (228)
52 PHA02917 ankyrin-like protein; 99.7 4.2E-17 9.2E-22 157.9 9.5 119 160-286 111-258 (661)
53 smart00064 FYVE Protein presen 99.7 7.6E-18 1.6E-22 115.7 2.5 59 4-62 9-67 (68)
54 KOG0514 Ankyrin repeat protein 99.7 2.2E-17 4.7E-22 142.8 5.3 98 191-288 267-404 (452)
55 PHA02876 ankyrin repeat protei 99.7 1.7E-16 3.6E-21 155.8 11.7 116 166-288 288-405 (682)
56 KOG0514 Ankyrin repeat protein 99.7 1.4E-16 3E-21 137.9 7.6 117 163-279 279-428 (452)
57 PHA02736 Viral ankyrin protein 99.7 1.5E-16 3.3E-21 127.3 6.4 97 191-289 16-124 (154)
58 KOG1818 Membrane trafficking a 99.7 2.7E-17 5.8E-22 153.0 1.8 62 6-67 166-227 (634)
59 KOG0502 Integral membrane anky 99.6 3.5E-17 7.5E-22 132.7 1.9 121 160-288 168-288 (296)
60 PHA02792 ankyrin-like protein; 99.6 5E-16 1.1E-20 146.6 9.8 118 163-289 319-441 (631)
61 PLN03192 Voltage-dependent pot 99.6 9.6E-16 2.1E-20 153.0 12.0 97 193-289 526-653 (823)
62 PF12796 Ank_2: Ankyrin repeat 99.6 4.9E-16 1.1E-20 112.5 6.6 83 162-255 7-89 (89)
63 PTZ00322 6-phosphofructo-2-kin 99.6 1.6E-15 3.5E-20 147.6 11.6 94 195-288 85-185 (664)
64 KOG0510 Ankyrin repeat protein 99.6 4.7E-16 1E-20 146.4 7.3 137 149-285 222-368 (929)
65 PHA02792 ankyrin-like protein; 99.6 8.4E-16 1.8E-20 145.1 8.3 121 160-285 347-480 (631)
66 PHA02730 ankyrin-like protein; 99.6 1.2E-15 2.5E-20 145.6 9.1 114 165-285 395-525 (672)
67 PF13857 Ank_5: Ankyrin repeat 99.6 4.5E-16 9.6E-21 102.6 4.4 55 211-265 1-56 (56)
68 KOG0515 p53-interacting protei 99.6 4.7E-15 1E-19 133.6 11.8 92 196-287 554-645 (752)
69 KOG0505 Myosin phosphatase, re 99.6 6.7E-16 1.4E-20 139.7 5.8 122 161-289 82-262 (527)
70 cd00204 ANK ankyrin repeats; 99.6 1.3E-14 2.8E-19 110.4 11.9 99 191-289 6-104 (126)
71 cd00065 FYVE FYVE domain; Zinc 99.6 3.4E-16 7.3E-21 103.7 2.1 54 6-59 3-56 (57)
72 KOG0195 Integrin-linked kinase 99.6 2.1E-15 4.6E-20 127.0 5.5 120 160-286 42-161 (448)
73 KOG1819 FYVE finger-containing 99.6 4.8E-16 1E-20 139.2 1.1 57 4-60 900-961 (990)
74 PF13637 Ank_4: Ankyrin repeat 99.6 6.6E-15 1.4E-19 96.3 5.9 54 225-278 1-54 (54)
75 KOG1729 FYVE finger containing 99.5 6E-16 1.3E-20 133.3 -0.1 59 4-63 167-226 (288)
76 KOG4214 Myotrophin and similar 99.5 9.1E-15 2E-19 102.9 5.4 96 162-265 12-107 (117)
77 KOG0505 Myosin phosphatase, re 99.5 9.9E-15 2.1E-19 132.2 6.4 122 160-288 48-228 (527)
78 COG0666 Arp FOG: Ankyrin repea 99.5 1.1E-13 2.3E-18 116.1 11.2 106 168-280 89-202 (235)
79 COG0666 Arp FOG: Ankyrin repea 99.5 6E-14 1.3E-18 117.6 9.4 95 194-288 75-177 (235)
80 PF13637 Ank_4: Ankyrin repeat 99.5 4.2E-14 9E-19 92.5 6.5 54 192-245 1-54 (54)
81 cd00204 ANK ankyrin repeats; 99.5 1.5E-13 3.2E-18 104.5 9.6 111 161-278 16-126 (126)
82 TIGR00870 trp transient-recept 99.5 8.8E-14 1.9E-18 137.8 9.4 127 156-289 21-206 (743)
83 KOG0507 CASK-interacting adapt 99.5 5.8E-14 1.3E-18 131.6 6.4 113 161-280 58-170 (854)
84 KOG1710 MYND Zn-finger and ank 99.5 2.2E-13 4.8E-18 114.8 8.5 83 195-277 48-131 (396)
85 KOG0515 p53-interacting protei 99.4 1.5E-13 3.1E-18 124.1 7.0 93 187-279 578-673 (752)
86 KOG0507 CASK-interacting adapt 99.4 9.6E-14 2.1E-18 130.2 5.8 99 191-289 48-146 (854)
87 KOG3676 Ca2+-permeable cation 99.4 2.5E-13 5.4E-18 128.6 8.4 100 189-288 181-305 (782)
88 TIGR00870 trp transient-recept 99.4 2.5E-13 5.5E-18 134.6 7.6 95 190-284 126-243 (743)
89 PTZ00303 phosphatidylinositol 99.4 7.8E-14 1.7E-18 130.5 2.7 56 6-61 461-529 (1374)
90 KOG1710 MYND Zn-finger and ank 99.4 8.8E-13 1.9E-17 111.3 6.3 97 194-290 14-111 (396)
91 KOG3676 Ca2+-permeable cation 99.3 1.4E-12 3E-17 123.7 6.6 119 162-280 194-330 (782)
92 PF13857 Ank_5: Ankyrin repeat 99.3 2.2E-12 4.8E-17 84.9 4.7 55 171-232 1-56 (56)
93 PTZ00322 6-phosphofructo-2-kin 99.3 3.5E-12 7.6E-17 124.4 7.6 102 158-266 88-196 (664)
94 KOG0818 GTPase-activating prot 99.1 1.5E-10 3.2E-15 104.1 8.8 86 195-280 136-222 (669)
95 KOG4369 RTK signaling protein 99.1 2.2E-11 4.8E-16 118.2 3.8 121 161-288 766-887 (2131)
96 KOG1841 Smad anchor for recept 99.1 4.5E-11 9.8E-16 116.3 3.0 54 3-57 555-608 (1287)
97 KOG4369 RTK signaling protein 99.1 5.5E-11 1.2E-15 115.6 3.2 123 160-287 865-988 (2131)
98 KOG0506 Glutaminase (contains 99.1 1.4E-10 3E-15 103.9 5.1 89 194-282 508-597 (622)
99 KOG0782 Predicted diacylglycer 99.0 2.7E-10 5.8E-15 104.1 6.2 87 194-280 901-989 (1004)
100 PF13606 Ank_3: Ankyrin repeat 99.0 2E-10 4.3E-15 65.2 3.3 28 258-285 2-29 (30)
101 KOG0705 GTPase-activating prot 99.0 8.7E-10 1.9E-14 100.9 7.8 90 195-284 627-720 (749)
102 KOG0783 Uncharacterized conser 99.0 2.5E-10 5.5E-15 108.3 3.4 76 192-267 52-128 (1267)
103 PF13606 Ank_3: Ankyrin repeat 99.0 7.8E-10 1.7E-14 62.7 4.1 30 224-253 1-30 (30)
104 PF00023 Ank: Ankyrin repeat H 99.0 6.5E-10 1.4E-14 64.7 3.5 31 258-288 2-32 (33)
105 KOG0522 Ankyrin repeat protein 98.9 1.7E-09 3.6E-14 98.5 7.0 86 195-280 23-110 (560)
106 PF00023 Ank: Ankyrin repeat H 98.9 2E-09 4.3E-14 62.6 4.4 33 224-256 1-33 (33)
107 KOG1409 Uncharacterized conser 98.9 2.5E-10 5.4E-15 98.7 0.7 72 7-78 284-366 (404)
108 KOG1842 FYVE finger-containing 98.9 1.1E-10 2.3E-15 103.8 -2.6 59 5-63 180-260 (505)
109 KOG0783 Uncharacterized conser 98.9 5.9E-10 1.3E-14 105.9 1.5 72 218-289 45-117 (1267)
110 KOG0511 Ankyrin repeat protein 98.7 5.2E-08 1.1E-12 85.5 8.4 83 195-280 39-121 (516)
111 KOG0521 Putative GTPase activa 98.6 2.2E-08 4.8E-13 98.1 4.4 93 186-278 650-742 (785)
112 KOG1843 Uncharacterized conser 98.6 2.9E-08 6.3E-13 87.6 2.5 55 7-61 162-218 (473)
113 KOG2384 Major histocompatibili 98.6 1.2E-07 2.7E-12 75.8 5.6 65 216-280 3-68 (223)
114 KOG0782 Predicted diacylglycer 98.5 3.5E-07 7.5E-12 84.2 9.1 95 195-289 869-965 (1004)
115 KOG0705 GTPase-activating prot 98.5 1.1E-07 2.5E-12 87.4 5.9 83 167-252 639-721 (749)
116 KOG0818 GTPase-activating prot 98.3 1.2E-06 2.6E-11 79.5 6.3 82 159-246 140-221 (669)
117 KOG0506 Glutaminase (contains 98.3 2.4E-07 5.1E-12 83.6 1.7 87 156-249 510-597 (622)
118 KOG4424 Predicted Rho/Rac guan 98.3 2.6E-07 5.6E-12 85.2 1.7 60 6-66 416-476 (623)
119 KOG0520 Uncharacterized conser 98.3 4.6E-07 1E-11 88.9 3.5 96 192-287 574-670 (975)
120 KOG0511 Ankyrin repeat protein 98.3 1.5E-06 3.2E-11 76.6 5.5 58 226-283 37-94 (516)
121 KOG3609 Receptor-activated Ca2 98.2 3.3E-06 7.1E-11 81.5 6.0 87 193-286 63-159 (822)
122 KOG0522 Ankyrin repeat protein 98.1 6.6E-06 1.4E-10 75.5 6.6 67 174-247 44-110 (560)
123 KOG0521 Putative GTPase activa 98.1 2.4E-06 5.3E-11 84.0 4.1 77 213-289 642-720 (785)
124 KOG1811 Predicted Zn2+-binding 98.1 3.6E-07 7.8E-12 84.9 -2.3 55 8-62 329-384 (1141)
125 KOG0230 Phosphatidylinositol-4 98.0 6.1E-06 1.3E-10 83.7 5.5 53 1-64 1-53 (1598)
126 KOG2384 Major histocompatibili 97.9 4.8E-05 1.1E-09 61.2 7.8 69 176-251 3-72 (223)
127 KOG0520 Uncharacterized conser 97.7 1.4E-05 3.1E-10 78.6 2.5 85 195-280 611-702 (975)
128 KOG2505 Ankyrin repeat protein 97.5 0.00023 4.9E-09 65.1 6.5 62 205-266 404-471 (591)
129 smart00248 ANK ankyrin repeats 97.5 0.00018 3.8E-09 38.8 3.4 27 225-251 2-28 (30)
130 smart00248 ANK ankyrin repeats 97.4 0.0004 8.6E-09 37.3 4.1 28 258-285 2-29 (30)
131 KOG0230 Phosphatidylinositol-4 97.2 0.00017 3.7E-09 73.6 2.1 29 5-35 97-125 (1598)
132 KOG3609 Receptor-activated Ca2 97.1 0.00057 1.2E-08 66.4 4.2 82 195-283 28-113 (822)
133 PF02318 FYVE_2: FYVE-type zin 96.8 0.00053 1.2E-08 52.1 1.3 50 5-61 54-104 (118)
134 KOG2505 Ankyrin repeat protein 96.4 0.0035 7.5E-08 57.6 3.9 76 166-245 405-480 (591)
135 PF06128 Shigella_OspC: Shigel 96.4 0.011 2.5E-07 49.2 6.5 90 194-284 181-280 (284)
136 PF07975 C1_4: TFIIH C1-like d 95.0 0.0034 7.4E-08 39.7 -1.3 29 7-35 1-35 (51)
137 KOG1729 FYVE finger containing 92.5 0.032 7E-07 48.8 -0.3 56 5-60 20-81 (288)
138 PF11929 DUF3447: Domain of un 92.3 0.27 5.9E-06 34.0 4.3 46 195-247 9-54 (76)
139 PF11929 DUF3447: Domain of un 90.8 0.28 6.2E-06 33.9 3.1 47 227-280 8-54 (76)
140 TIGR00622 ssl1 transcription f 90.3 0.2 4.3E-06 37.3 2.0 30 7-36 57-96 (112)
141 PF06128 Shigella_OspC: Shigel 90.3 0.61 1.3E-05 39.1 5.0 49 203-251 228-280 (284)
142 KOG1841 Smad anchor for recept 89.9 0.46 9.9E-06 48.3 4.7 45 6-63 658-702 (1287)
143 smart00154 ZnF_AN1 AN1-like Zi 86.1 0.51 1.1E-05 28.1 1.6 26 8-35 1-26 (39)
144 PF03158 DUF249: Multigene fam 85.9 1.7 3.6E-05 35.4 4.8 79 195-279 107-191 (192)
145 PRK00464 nrdR transcriptional 85.5 0.45 9.9E-06 37.7 1.4 15 17-31 24-38 (154)
146 PF00569 ZZ: Zinc finger, ZZ t 84.6 0.3 6.6E-06 30.2 0.1 33 2-35 1-34 (46)
147 smart00291 ZnF_ZZ Zinc-binding 84.1 0.52 1.1E-05 28.8 0.9 31 3-35 2-33 (44)
148 KOG0993 Rab5 GTPase effector R 84.0 0.06 1.3E-06 48.5 -4.6 60 6-67 469-530 (542)
149 PF09538 FYDLN_acid: Protein o 82.4 0.76 1.6E-05 34.1 1.4 27 7-33 11-38 (108)
150 TIGR02300 FYDLN_acid conserved 81.2 0.95 2.1E-05 34.3 1.6 24 7-30 11-35 (129)
151 KOG4275 Predicted E3 ubiquitin 79.8 0.31 6.6E-06 42.2 -1.6 47 6-61 45-91 (350)
152 PF03158 DUF249: Multigene fam 78.6 3 6.5E-05 33.9 3.7 86 195-285 79-170 (192)
153 KOG2164 Predicted E3 ubiquitin 77.4 0.72 1.6E-05 43.1 -0.1 52 5-63 186-237 (513)
154 PF07191 zinc-ribbons_6: zinc- 76.4 1.3 2.7E-05 30.0 0.9 55 7-63 3-62 (70)
155 KOG0320 Predicted E3 ubiquitin 76.2 0.4 8.6E-06 38.5 -1.8 49 7-63 130-179 (187)
156 KOG3173 Predicted Zn-finger pr 75.0 1.4 3E-05 35.5 0.9 25 8-35 108-132 (167)
157 COG2126 RPL37A Ribosomal prote 72.3 1.9 4.2E-05 27.8 0.9 24 15-38 8-40 (61)
158 PF13717 zinc_ribbon_4: zinc-r 71.6 2.2 4.7E-05 24.9 1.0 25 7-31 4-35 (36)
159 PHA02768 hypothetical protein; 71.5 2.6 5.7E-05 27.1 1.4 31 1-31 1-41 (55)
160 PF01485 IBR: IBR domain; Int 70.2 3.3 7.1E-05 27.0 1.8 28 11-38 26-57 (64)
161 COG1773 Rubredoxin [Energy pro 69.3 2.2 4.9E-05 27.3 0.8 39 20-58 2-43 (55)
162 PF14634 zf-RING_5: zinc-RING 67.0 1.4 3E-05 26.8 -0.6 32 8-40 2-33 (44)
163 KOG3795 Uncharacterized conser 66.9 2.6 5.7E-05 33.7 0.9 24 13-36 7-33 (230)
164 KOG1280 Uncharacterized conser 64.0 2.8 6.2E-05 37.3 0.6 44 2-46 5-49 (381)
165 PRK00398 rpoP DNA-directed RNA 63.7 4.3 9.4E-05 24.9 1.3 23 7-29 5-29 (46)
166 cd00162 RING RING-finger (Real 63.5 1.1 2.3E-05 26.6 -1.6 42 8-59 2-43 (45)
167 PF13719 zinc_ribbon_5: zinc-r 63.5 3.4 7.4E-05 24.1 0.7 25 7-31 4-35 (37)
168 cd02341 ZZ_ZZZ3 Zinc finger, Z 62.0 3.4 7.4E-05 25.8 0.5 30 7-37 2-34 (48)
169 KOG0317 Predicted E3 ubiquitin 61.2 1.7 3.7E-05 37.7 -1.2 31 24-62 254-284 (293)
170 KOG3576 Ovo and related transc 60.7 1.4 3.1E-05 36.2 -1.7 24 8-31 120-155 (267)
171 cd02342 ZZ_UBA_plant Zinc fing 60.4 4.2 9E-05 24.7 0.7 30 7-37 2-32 (43)
172 PF10571 UPF0547: Uncharacteri 57.9 7.1 0.00015 20.9 1.3 7 24-30 17-23 (26)
173 cd02340 ZZ_NBR1_like Zinc fing 57.5 5.6 0.00012 24.1 1.0 30 7-38 2-32 (43)
174 TIGR02605 CxxC_CxxC_SSSS putat 56.8 4.9 0.00011 25.2 0.6 20 1-20 1-20 (52)
175 KOG0823 Predicted E3 ubiquitin 56.8 5.5 0.00012 33.5 1.1 34 26-64 64-97 (230)
176 COG5574 PEX10 RING-finger-cont 55.9 2.7 5.9E-05 36.0 -0.9 33 22-61 228-261 (271)
177 KOG4739 Uncharacterized protei 53.3 6.5 0.00014 33.3 1.0 43 7-61 5-47 (233)
178 PF09297 zf-NADH-PPase: NADH p 53.2 7.4 0.00016 21.8 0.9 25 31-59 5-29 (32)
179 KOG0978 E3 ubiquitin ligase in 53.0 1.7 3.6E-05 42.7 -2.9 31 24-61 658-688 (698)
180 PF13639 zf-RING_2: Ring finge 52.1 2.9 6.4E-05 25.2 -1.0 34 7-41 2-35 (44)
181 PF14835 zf-RING_6: zf-RING of 51.6 12 0.00025 25.0 1.7 43 9-61 8-50 (65)
182 PF03107 C1_2: C1 domain; Int 51.4 15 0.00033 20.2 2.0 27 8-35 3-29 (30)
183 PF14803 Nudix_N_2: Nudix N-te 50.8 8.5 0.00018 22.1 0.9 28 31-59 2-30 (34)
184 PF06221 zf-C2HC5: Putative zi 50.6 5.7 0.00012 25.8 0.2 13 21-33 18-30 (57)
185 PF06750 DiS_P_DiS: Bacterial 50.3 4.8 0.0001 28.9 -0.2 45 13-62 25-69 (92)
186 PF01428 zf-AN1: AN1-like Zinc 50.3 9.2 0.0002 23.1 1.1 15 21-35 13-27 (43)
187 cd02249 ZZ Zinc finger, ZZ typ 50.1 7.1 0.00015 23.9 0.6 29 7-37 2-31 (46)
188 TIGR00100 hypA hydrogenase nic 49.6 8.4 0.00018 28.9 1.0 21 8-28 73-93 (115)
189 KOG1314 DHHC-type Zn-finger pr 48.8 5.2 0.00011 35.8 -0.3 13 18-30 102-114 (414)
190 PF01529 zf-DHHC: DHHC palmito 48.8 8.9 0.00019 30.6 1.1 14 17-30 58-71 (174)
191 PRK00432 30S ribosomal protein 48.6 14 0.00029 23.3 1.7 24 7-30 22-46 (50)
192 PF00301 Rubredoxin: Rubredoxi 48.3 8.5 0.00019 23.9 0.7 14 21-34 1-14 (47)
193 KOG1595 CCCH-type Zn-finger pr 47.8 4.6 9.9E-05 38.1 -0.8 88 192-281 58-155 (528)
194 PLN03208 E3 ubiquitin-protein 47.5 4.6 0.0001 33.2 -0.7 54 5-62 18-79 (193)
195 KOG2932 E3 ubiquitin ligase in 47.2 8 0.00017 34.0 0.6 42 8-62 93-134 (389)
196 COG3357 Predicted transcriptio 46.6 9.7 0.00021 27.1 0.9 19 15-33 52-70 (97)
197 smart00647 IBR In Between Ring 46.3 17 0.00036 23.5 2.0 30 10-39 25-58 (64)
198 PF12773 DZR: Double zinc ribb 46.3 17 0.00037 22.5 1.9 10 51-60 29-38 (50)
199 PF13248 zf-ribbon_3: zinc-rib 45.5 9.5 0.00021 20.2 0.5 7 51-57 16-22 (26)
200 cd02345 ZZ_dah Zinc finger, ZZ 42.7 11 0.00023 23.6 0.5 27 7-35 2-30 (49)
201 TIGR02098 MJ0042_CXXC MJ0042 f 42.0 15 0.00032 21.3 1.1 11 8-18 5-15 (38)
202 smart00659 RPOLCX RNA polymera 42.0 15 0.00032 22.4 1.1 11 8-18 5-15 (44)
203 KOG1315 Predicted DHHC-type Zn 41.9 10 0.00022 33.8 0.4 22 2-28 123-144 (307)
204 PF03604 DNA_RNApol_7kD: DNA d 41.8 19 0.00042 20.3 1.4 22 8-29 3-25 (32)
205 PRK00564 hypA hydrogenase nick 41.7 14 0.00031 27.8 1.2 11 8-18 74-84 (117)
206 COG1996 RPC10 DNA-directed RNA 41.4 13 0.00028 23.3 0.8 11 8-18 9-19 (49)
207 PF13465 zf-H2C2_2: Zinc-finge 40.8 16 0.00034 19.3 0.9 14 18-31 11-24 (26)
208 KOG1311 DHHC-type Zn-finger pr 40.7 14 0.00031 32.6 1.2 22 6-29 114-135 (299)
209 PF01155 HypA: Hydrogenase exp 40.6 7.7 0.00017 29.0 -0.4 21 8-28 73-93 (113)
210 PRK12495 hypothetical protein; 40.2 2.3E+02 0.0049 23.9 9.0 29 21-63 42-70 (226)
211 KOG1818 Membrane trafficking a 39.8 3.8 8.2E-05 39.7 -2.7 51 7-58 56-107 (634)
212 KOG3836 HLH transcription fact 39.5 7.2 0.00016 37.5 -0.9 55 199-253 403-457 (605)
213 PF12172 DUF35_N: Rubredoxin-l 38.5 18 0.0004 20.8 1.1 8 23-30 13-20 (37)
214 PF09332 Mcm10: Mcm10 replicat 38.2 12 0.00025 33.9 0.2 26 31-60 287-312 (344)
215 cd00350 rubredoxin_like Rubred 37.4 18 0.00039 20.4 0.9 11 21-31 1-11 (33)
216 PF09947 DUF2180: Uncharacteri 37.3 7.7 0.00017 26.1 -0.8 54 8-62 3-67 (68)
217 cd00202 ZnF_GATA Zinc finger D 37.1 14 0.00031 23.6 0.5 14 8-21 2-15 (54)
218 PF09723 Zn-ribbon_8: Zinc rib 37.1 14 0.00031 22.1 0.5 11 49-59 24-34 (42)
219 PF07282 OrfB_Zn_ribbon: Putat 36.8 25 0.00054 23.4 1.7 23 8-30 31-55 (69)
220 PF13923 zf-C3HC4_2: Zinc fing 36.8 9.4 0.0002 22.3 -0.4 24 17-40 7-30 (39)
221 KOG3836 HLH transcription fact 36.6 12 0.00026 36.0 0.2 53 232-284 403-455 (605)
222 KOG1709 Guanidinoacetate methy 36.3 31 0.00067 29.1 2.4 22 195-216 18-39 (271)
223 KOG1311 DHHC-type Zn-finger pr 36.2 16 0.00035 32.2 0.9 23 2-29 127-149 (299)
224 PF01907 Ribosomal_L37e: Ribos 36.0 22 0.00047 22.8 1.1 13 24-36 18-37 (55)
225 PF07503 zf-HYPF: HypF finger; 35.8 6 0.00013 22.9 -1.3 16 8-23 2-18 (35)
226 TIGR01562 FdhE formate dehydro 35.6 19 0.00042 32.0 1.2 45 19-64 208-265 (305)
227 PF02150 RNA_POL_M_15KD: RNA p 35.0 19 0.00041 20.7 0.7 27 30-59 2-28 (35)
228 smart00834 CxxC_CXXC_SSSS Puta 34.9 18 0.00038 21.2 0.6 13 7-19 7-19 (41)
229 COG1645 Uncharacterized Zn-fin 34.9 21 0.00045 27.4 1.1 11 27-37 42-52 (131)
230 PRK00420 hypothetical protein; 34.8 27 0.00059 26.1 1.7 12 5-16 23-34 (112)
231 PF10892 DUF2688: Protein of u 34.6 13 0.00027 23.9 -0.1 9 22-30 11-19 (60)
232 cd02339 ZZ_Mind_bomb Zinc fing 34.2 21 0.00046 21.8 0.9 30 7-37 2-32 (45)
233 PF13445 zf-RING_UBOX: RING-ty 33.7 12 0.00026 22.7 -0.3 31 9-40 2-32 (43)
234 PF01286 XPA_N: XPA protein N- 33.7 18 0.00039 20.8 0.5 9 50-58 23-31 (34)
235 PF08271 TF_Zn_Ribbon: TFIIB z 33.3 22 0.00049 21.3 0.9 9 53-61 21-29 (43)
236 PF05443 ROS_MUCR: ROS/MUCR tr 33.1 9.9 0.00021 29.3 -0.9 19 3-22 70-88 (132)
237 cd00730 rubredoxin Rubredoxin; 32.8 23 0.0005 22.3 0.9 13 21-33 1-13 (50)
238 PRK12380 hydrogenase nickel in 32.6 22 0.00047 26.6 0.9 8 21-28 70-77 (113)
239 smart00401 ZnF_GATA zinc finge 32.4 44 0.00094 21.1 2.2 16 6-21 4-19 (52)
240 TIGR00570 cdk7 CDK-activating 31.9 16 0.00034 32.4 0.1 49 6-62 4-54 (309)
241 PRK03824 hypA hydrogenase nick 31.8 22 0.00049 27.4 0.9 16 16-31 65-80 (135)
242 KOG1812 Predicted E3 ubiquitin 31.6 20 0.00044 33.0 0.8 33 6-39 307-341 (384)
243 KOG1814 Predicted E3 ubiquitin 31.2 24 0.00053 32.4 1.1 36 5-40 368-405 (445)
244 PF13920 zf-C3HC4_3: Zinc fing 31.2 7.3 0.00016 24.2 -1.6 44 6-61 3-47 (50)
245 PRK03681 hypA hydrogenase nick 31.0 24 0.00053 26.4 1.0 9 21-29 70-78 (114)
246 PRK06260 threonine synthase; V 31.0 33 0.00071 31.7 2.0 25 6-30 4-28 (397)
247 cd02344 ZZ_HERC2 Zinc finger, 30.8 28 0.00061 21.3 1.0 31 7-38 2-33 (45)
248 cd02335 ZZ_ADA2 Zinc finger, Z 30.7 44 0.00096 20.7 2.0 31 7-38 2-33 (49)
249 PF00096 zf-C2H2: Zinc finger, 30.5 24 0.00051 17.5 0.6 9 23-31 2-10 (23)
250 PRK03564 formate dehydrogenase 29.9 39 0.00085 30.1 2.2 45 19-64 210-265 (309)
251 KOG0153 Predicted RNA-binding 29.6 20 0.00043 32.1 0.3 16 5-20 41-56 (377)
252 PF15227 zf-C3HC4_4: zinc fing 29.5 12 0.00026 22.4 -0.8 17 25-41 14-30 (42)
253 PF09722 DUF2384: Protein of u 29.5 45 0.00098 20.9 1.9 21 257-277 26-47 (54)
254 PF04216 FdhE: Protein involve 29.3 18 0.00039 31.9 -0.0 47 19-65 195-252 (290)
255 PF14445 Prok-RING_2: Prokaryo 28.8 9.8 0.00021 23.8 -1.2 43 7-61 9-51 (57)
256 COG1998 RPS31 Ribosomal protei 28.7 31 0.00067 21.6 0.9 10 19-28 17-26 (51)
257 smart00661 RPOL9 RNA polymeras 28.6 42 0.00092 20.7 1.6 29 31-61 2-30 (52)
258 KOG4591 Uncharacterized conser 28.5 35 0.00076 28.3 1.5 46 223-268 220-270 (280)
259 cd07153 Fur_like Ferric uptake 28.5 29 0.00063 25.6 1.0 14 24-37 76-89 (116)
260 cd02338 ZZ_PCMF_like Zinc fing 28.5 43 0.00092 20.8 1.6 27 7-35 2-30 (49)
261 cd00729 rubredoxin_SM Rubredox 28.2 31 0.00068 19.6 0.9 13 21-33 2-14 (34)
262 PLN03148 Blue copper-like prot 28.2 81 0.0018 25.4 3.5 17 109-125 105-121 (167)
263 PRK11595 DNA utilization prote 27.8 15 0.00032 31.1 -0.8 20 8-29 23-42 (227)
264 PRK04136 rpl40e 50S ribosomal 27.5 41 0.00088 20.9 1.3 22 6-29 15-36 (48)
265 cd02336 ZZ_RSC8 Zinc finger, Z 27.4 28 0.0006 21.4 0.6 12 50-61 22-33 (45)
266 KOG3183 Predicted Zn-finger pr 26.9 26 0.00056 29.7 0.5 41 21-62 23-66 (250)
267 KOG0513 Ca2+-independent phosp 26.8 3.4 7.4E-05 39.3 -5.3 70 194-272 138-207 (503)
268 PTZ00073 60S ribosomal protein 26.7 46 0.001 23.6 1.7 14 24-37 19-39 (91)
269 PF13913 zf-C2HC_2: zinc-finge 26.7 34 0.00074 17.9 0.8 9 23-31 4-12 (25)
270 PF04981 NMD3: NMD3 family ; 26.6 29 0.00064 29.5 0.8 40 24-63 1-47 (236)
271 PRK04179 rpl37e 50S ribosomal 25.9 35 0.00076 22.4 0.9 7 24-30 20-26 (62)
272 KOG1829 Uncharacterized conser 25.8 24 0.00052 34.2 0.1 33 8-40 343-377 (580)
273 COG3364 Zn-ribbon containing p 25.8 26 0.00057 25.5 0.3 12 21-32 2-13 (112)
274 PF14432 DYW_deaminase: DYW fa 25.4 24 0.00053 26.4 0.1 12 51-62 83-94 (116)
275 PF02148 zf-UBP: Zn-finger in 25.4 44 0.00095 21.9 1.3 17 18-34 8-24 (63)
276 PF13901 DUF4206: Domain of un 24.8 36 0.00078 28.3 1.0 42 23-64 2-48 (202)
277 COG1198 PriA Primosomal protei 24.3 49 0.0011 33.2 1.9 12 195-206 606-617 (730)
278 PF10013 DUF2256: Uncharacteri 23.8 27 0.00058 21.1 0.0 15 6-20 9-23 (42)
279 KOG1924 RhoA GTPase effector D 23.7 98 0.0021 31.2 3.8 6 260-265 862-867 (1102)
280 TIGR00244 transcriptional regu 23.7 34 0.00074 26.8 0.6 8 196-203 70-77 (147)
281 COG5273 Uncharacterized protei 23.7 34 0.00075 30.5 0.7 11 19-29 121-131 (309)
282 PF09845 DUF2072: Zn-ribbon co 23.6 32 0.00069 26.4 0.4 11 22-32 2-12 (131)
283 PF15470 DUF4637: Domain of un 23.6 37 0.0008 26.4 0.8 21 20-40 130-150 (173)
284 PRK08351 DNA-directed RNA poly 23.4 40 0.00087 22.2 0.8 9 23-31 5-13 (61)
285 PRK14873 primosome assembly pr 23.4 47 0.001 33.0 1.7 12 195-206 541-552 (665)
286 PRK06393 rpoE DNA-directed RNA 23.2 38 0.00083 22.5 0.7 15 23-37 7-25 (64)
287 smart00184 RING Ring finger. E 23.1 12 0.00026 20.8 -1.6 18 23-40 12-29 (39)
288 PHA00732 hypothetical protein 22.4 74 0.0016 22.1 2.1 10 7-16 3-12 (79)
289 PF13894 zf-C2H2_4: C2H2-type 22.4 44 0.00095 16.2 0.7 8 24-31 3-10 (24)
290 PF15474 MU117: Meiotically up 22.4 39 0.00084 24.6 0.6 18 18-35 69-87 (97)
291 PRK08197 threonine synthase; V 22.3 53 0.0012 30.3 1.7 25 5-30 7-31 (394)
292 PF09889 DUF2116: Uncharacteri 22.2 40 0.00087 22.0 0.6 9 21-29 3-11 (59)
293 PRK14559 putative protein seri 22.2 53 0.0012 32.5 1.7 20 7-30 17-36 (645)
294 COG4098 comFA Superfamily II D 22.2 36 0.00078 30.9 0.5 14 16-29 34-47 (441)
295 PF07754 DUF1610: Domain of un 22.0 69 0.0015 16.8 1.4 7 22-28 17-23 (24)
296 PF12591 DUF3762: Protein of u 21.8 33 0.00071 23.0 0.2 11 22-32 67-77 (80)
297 PF01147 Crust_neurohorm: Crus 21.8 21 0.00045 24.5 -0.8 15 48-62 17-31 (73)
298 KOG1313 DHHC-type Zn-finger pr 21.7 28 0.00061 30.2 -0.2 11 19-29 114-124 (309)
299 PF06397 Desulfoferrod_N: Desu 21.6 42 0.00092 19.5 0.6 11 21-31 6-16 (36)
300 cd02343 ZZ_EF Zinc finger, ZZ 21.5 51 0.0011 20.6 0.9 27 7-35 2-29 (48)
301 cd02337 ZZ_CBP Zinc finger, ZZ 21.2 36 0.00079 20.3 0.3 27 8-37 3-30 (41)
302 COG0498 ThrC Threonine synthas 21.1 40 0.00086 31.4 0.6 30 1-30 1-30 (411)
303 PRK07591 threonine synthase; V 20.9 61 0.0013 30.2 1.8 24 6-30 19-42 (421)
304 PF00097 zf-C3HC4: Zinc finger 20.9 29 0.00064 20.1 -0.2 19 23-41 13-31 (41)
305 TIGR01384 TFS_arch transcripti 20.9 58 0.0013 23.6 1.4 10 51-60 16-25 (104)
306 PRK04023 DNA polymerase II lar 20.6 80 0.0017 32.8 2.6 43 6-62 627-674 (1121)
307 PRK08329 threonine synthase; V 20.4 65 0.0014 29.1 1.8 23 6-30 2-24 (347)
308 PLN02569 threonine synthase 20.1 66 0.0014 30.7 1.9 17 8-24 52-68 (484)
No 1
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-24 Score=169.94 Aligned_cols=122 Identities=26% Similarity=0.323 Sum_probs=69.4
Q ss_pred CCCCCccccccc-CCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCH
Q 022927 161 GSTSNSNFSSIF-NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRT 238 (290)
Q Consensus 161 ~s~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~ 238 (290)
+-+..+++.+|+ +.+..++..++.+|+ |||.|+..|+.++|+.|+.+ |+|+|..+..|.|+||||+-.|+.
T Consensus 47 S~g~~eiv~fLlsq~nv~~ddkDdaGWt-------Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~ 119 (226)
T KOG4412|consen 47 SFGHVEIVYFLLSQPNVKPDDKDDAGWT-------PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRL 119 (226)
T ss_pred ecCchhHHHHHHhcCCCCCCCccccCCc-------hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChh
Confidence 334445555555 334444444443333 56666666666666666655 566666666666666666666666
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+|+++|+++|+.|+++|..|.||||.|+..|..+++++|+..||.+|.+|+
T Consensus 120 eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk 170 (226)
T KOG4412|consen 120 EIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK 170 (226)
T ss_pred hHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence 666666666666666666666666666666666666666666666655554
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-24 Score=169.10 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=117.4
Q ss_pred ccCCCCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927 157 ARSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 235 (290)
Q Consensus 157 ~~~~~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~ 235 (290)
...++.++.++++.|+.. |++++..+..+.+ +||||+..|.++++++|+++|+.++.+|.+|.||||.|+.-
T Consensus 77 hia~s~g~~evVk~Ll~r~~advna~tn~G~T-------~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav 149 (226)
T KOG4412|consen 77 HIAASNGNDEVVKELLNRSGADVNATTNGGQT-------CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV 149 (226)
T ss_pred hhhhhcCcHHHHHHHhcCCCCCcceecCCCcc-------eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhc
Confidence 334667788899999988 9999998877665 89999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
|.++++++|+.+|+.+|.+|..|+||||.|...|+.+...+|+++||+++..|+
T Consensus 150 Gklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 150 GKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred cchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence 999999999999999999999999999999989999999999999999998875
No 3
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.86 E-value=2.8e-21 Score=140.23 Aligned_cols=89 Identities=28% Similarity=0.419 Sum_probs=83.8
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHH
Q 022927 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ 275 (290)
Q Consensus 196 Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~ 275 (290)
||+|+..|+.+++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 7999999999999999999988877 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCC
Q 022927 276 KMEEDKNNVGSTT 288 (290)
Q Consensus 276 ~Ll~~GAdin~~~ 288 (290)
+|+++|++++.+|
T Consensus 77 ~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 77 LLLEHGADVNIRN 89 (89)
T ss_dssp HHHHTTT-TTSS-
T ss_pred HHHHcCCCCCCcC
Confidence 9999999999886
No 4
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=155.53 Aligned_cols=117 Identities=21% Similarity=0.172 Sum_probs=103.9
Q ss_pred cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHH---HHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHH
Q 022927 166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIA 241 (290)
Q Consensus 166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv 241 (290)
+++++|++.|..++..+..+++ |||+|+..|+.+ ++++|++.|+++|.+| ..|.||||+|+..++.+++
T Consensus 38 ~~~~~l~~~g~~~~~~d~~g~t-------~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv 110 (166)
T PHA02743 38 EVAPFISGDGHLLHRYDHHGRQ-------CTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELA 110 (166)
T ss_pred HHHHHHhhcchhhhccCCCCCc-------HHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHH
Confidence 3445677788887776666555 999999998865 4899999999999998 5899999999999999999
Q ss_pred HHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 242 FILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 242 ~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
++|++ .|++++.+|..|+||||+|+..++.+++++|+++||+++..+.
T Consensus 111 ~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred HHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 99995 7999999999999999999999999999999999999998764
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.85 E-value=6.9e-21 Score=166.49 Aligned_cols=122 Identities=16% Similarity=0.063 Sum_probs=83.7
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT 238 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~ 238 (290)
...+..+++++|+..|++++..+..++ .||||+|+..|+.+++++||+++.+. .| ..|.||||+|+..|+.
T Consensus 102 a~~g~~eivk~Ll~~gadin~~~~~g~------~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~ 173 (284)
T PHA02791 102 VDSGNMQTVKLFVKKNWRLMFYGKTGW------KTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHV 173 (284)
T ss_pred HHcCCHHHHHHHHHCCCCcCccCCCCC------cHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCH
Confidence 344445555555555555544333322 14666666666666666666665432 12 2467888888888888
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCh-hhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 239 DIAFILMESGANMDCKNAQGESP-LDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d~~G~Tp-L~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+++++||++|+++|.+|..|.|| ||+|+..|+.+++++|+++|||+|++|.
T Consensus 174 eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~ 225 (284)
T PHA02791 174 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL 225 (284)
T ss_pred HHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence 88888888888888888888876 8888888888888888888888887763
No 6
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=157.63 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=106.5
Q ss_pred CCCcccccccCCCCCCCCCCC-CCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHH--cC
Q 022927 163 TSNSNFSSIFNPGQVTNGATD-KPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL--FN 236 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~~~~~~-~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~--~g 236 (290)
++.+++++|++.|++++..+. .+. ||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+. .+
T Consensus 64 ~~~eiv~~Ll~~gadvn~~~~~~g~-------TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~ 136 (209)
T PHA02859 64 VNVEILKFLIENGADVNFKTRDNNL-------SALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV 136 (209)
T ss_pred CCHHHHHHHHHCCCCCCccCCCCCC-------CHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence 456889999999999998763 344 499998764 47999999999999999999999999999876 46
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCChhhh-hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 237 RTDIAFILMESGANMDCKNAQGESPLDC-APVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~-A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|+|++++|.
T Consensus 137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999999995 5668899999999999999998874
No 7
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=173.58 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCC
Q 022927 160 RGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR 237 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~ 237 (290)
..-+..+.++.|++. |.+++..|..+.+ +||||+.+++++++++||++|+++|..+ ..+.||||||+++|+
T Consensus 52 ~q~G~l~~v~~lve~~g~~v~~~D~~g~t-------lLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~ 124 (600)
T KOG0509|consen 52 TQYGELETVKELVESEGESVNNPDREGVT-------LLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH 124 (600)
T ss_pred hhcchHHHHHHHHhhcCcCCCCCCcCCcc-------ceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence 445555666666666 6666666554443 6777777777777777777777777766 566677777777777
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+.++++|+++|||++.+|.+|.||||+|++.|+.-+|-+||.+|+|+|.+|.
T Consensus 125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~ 176 (600)
T KOG0509|consen 125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN 176 (600)
T ss_pred HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence 7777777777777777777777777777777777777777777777776653
No 8
>PHA02791 ankyrin-like protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=162.81 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
...+..+++++|++.|++++..+ +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 38 a~~g~~eiv~~Ll~~ga~~n~~d---------~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~e 108 (284)
T PHA02791 38 IADNNVRLVCTLLNAGALKNLLE---------NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQ 108 (284)
T ss_pred HHcCCHHHHHHHHHCcCCCcCCC---------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 44555566677777776655432 235777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHCCCCCCCCCCCCC-ChhhhhhccCCHHHHHHHHhCCCC
Q 022927 240 IAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNN 283 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~GAd 283 (290)
++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++|++
T Consensus 109 ivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~ 153 (284)
T PHA02791 109 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 153 (284)
T ss_pred HHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 77777777777777776664 677777777777777777777654
No 9
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.83 E-value=3.3e-20 Score=171.62 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=88.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 101 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~ 180 (413)
T PHA02875 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180 (413)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCC
Q 022927 271 YKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 271 ~~iv~~Ll~~GAdin~~~ 288 (290)
.+++++|+++||+++..+
T Consensus 181 ~eiv~~Ll~~ga~~n~~~ 198 (413)
T PHA02875 181 IAICKMLLDSGANIDYFG 198 (413)
T ss_pred HHHHHHHHhCCCCCCcCC
Confidence 999999999999988765
No 10
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=150.25 Aligned_cols=99 Identities=24% Similarity=0.202 Sum_probs=94.8
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC
Q 022927 190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTL 269 (290)
Q Consensus 190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g 269 (290)
+.|.|||+||+.+|++.+|++||+.|+|++...++..++|.+|...|..+|+++||+++.|+|..|.+|-|||-+|++.|
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn 237 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN 237 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCC
Q 022927 270 QYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 270 ~~~iv~~Ll~~GAdin~~~ 288 (290)
|.++++.||+.|||++..+
T Consensus 238 hvkcve~Ll~sGAd~t~e~ 256 (296)
T KOG0502|consen 238 HVKCVESLLNSGADVTQED 256 (296)
T ss_pred hHHHHHHHHhcCCCccccc
Confidence 9999999999999998765
No 11
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.83 E-value=3.6e-21 Score=170.87 Aligned_cols=120 Identities=22% Similarity=0.307 Sum_probs=112.3
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
+..+..++++.|+..|+++|....-..+ ||..||.-|++++|++|+++|+|+++.|..|.|.||+|+..|+.+
T Consensus 92 saAGHl~vVk~L~~~ga~VN~tT~TNSt-------PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~ 164 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLRRGASVNDTTRTNST-------PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD 164 (615)
T ss_pred hccCcHHHHHHHHHhcCccccccccCCc-------cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH
Confidence 4566788999999999999987765554 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS 286 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~ 286 (290)
|+++|++.|||+|.++..|+|+||.|++.|+.+|+++|+.+|+.++.
T Consensus 165 I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~ 211 (615)
T KOG0508|consen 165 IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV 211 (615)
T ss_pred HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence 99999999999999999999999999999999999999999997754
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.82 E-value=1.7e-20 Score=172.52 Aligned_cols=123 Identities=25% Similarity=0.307 Sum_probs=113.7
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
+-....+++++|+++|+++|...-. .+.||||||+++|++.+|++|+++|||++.+|.+|.++||+|+.+|+.-
T Consensus 86 AiNNrl~v~r~li~~gadvn~~gG~------l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~ 159 (600)
T KOG0509|consen 86 AINNRLDVARYLISHGADVNAIGGV------LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA 159 (600)
T ss_pred HHcCcHHHHHHHHHcCCCccccCCC------CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence 5566778889999999999987632 2335999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
++-+||.+|+|+|.+|.+|+||||+|+.+|+...++.||+.|++++.+|
T Consensus 160 ~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d 208 (600)
T KOG0509|consen 160 LVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD 208 (600)
T ss_pred HHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999888999999999998887
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=173.87 Aligned_cols=116 Identities=26% Similarity=0.301 Sum_probs=97.1
Q ss_pred cccccccCCCCCCCCCCCC-CCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927 166 SNFSSIFNPGQVTNGATDK-PRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244 (290)
Q Consensus 166 ~~~~~Ll~~g~~~~~~~~~-~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L 244 (290)
+++++|++.|++++..+.. +. ||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..++.+++++|
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~-------tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L 220 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGN-------TALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCC-------CHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 4778888888888877655 44 488888888888888888888888888888888888888888888888888
Q ss_pred HHCCCCCCCCCCCCCChhhhhhcc-CCHHHHHHHHhCCCCCCCCC
Q 022927 245 MESGANMDCKNAQGESPLDCAPVT-LQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 245 l~~Ga~in~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~GAdin~~~ 288 (290)
+++|++++.+|..|+||||+|+.. ++.+++++|+++|+++|..+
T Consensus 221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~ 265 (477)
T PHA02878 221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265 (477)
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence 888888888888888888888864 68888888888888888765
No 14
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.80 E-value=9.4e-20 Score=181.60 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=112.0
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHH-
Q 022927 156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL- 234 (290)
Q Consensus 156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~- 234 (290)
....+..++...++.|++.|++++..+..+.+ |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.
T Consensus 529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T-------pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~ 601 (823)
T PLN03192 529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRT-------PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA 601 (823)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence 33445677888999999999999988776655 9999999999999999999999999999999999886654
Q ss_pred ------------------------------cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927 235 ------------------------------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV 284 (290)
Q Consensus 235 ------------------------------~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi 284 (290)
.|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|||+
T Consensus 602 g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv 681 (823)
T PLN03192 602 KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681 (823)
T ss_pred CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence 45556677788899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 022927 285 GSTTS 289 (290)
Q Consensus 285 n~~~~ 289 (290)
+..|.
T Consensus 682 ~~~~~ 686 (823)
T PLN03192 682 DKANT 686 (823)
T ss_pred CCCCC
Confidence 98764
No 15
>PHA03095 ankyrin-like protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=169.07 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=108.4
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC---CHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g 236 (290)
....+.+.+++|++.|++++..+..+.+ |||+|+..+ +.+++++|+++|+++|.+|..|+||||+|+..+
T Consensus 22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t-------~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~ 94 (471)
T PHA03095 22 ASNVTVEEVRRLLAAGADVNFRGEYGKT-------PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA 94 (471)
T ss_pred CCCCCHHHHHHHHHcCCCcccCCCCCCC-------HHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 4455667889999999999887766555 899999988 899999999999999999999999999999999
Q ss_pred -CHHHHHHHHHCCCCCCCCCCCCCChhhhhh--ccCCHHHHHHHHhCCCCCCCCCC
Q 022927 237 -RTDIAFILMESGANMDCKNAQGESPLDCAP--VTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 237 -~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~--~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
..+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++..|.
T Consensus 95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~ 150 (471)
T PHA03095 95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL 150 (471)
T ss_pred CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence 599999999999999999999999999999 56688999999999999988764
No 16
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.80 E-value=1.6e-19 Score=167.04 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=112.3
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927 159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 238 (290)
Q Consensus 159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~ 238 (290)
....+..+++++|++.|++++..+..+. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~-------tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~ 181 (413)
T PHA02875 109 ATILKKLDIMKLLIARGADPDIPNTDKF-------SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI 181 (413)
T ss_pred HHHhCCHHHHHHHHhCCCCCCCCCCCCC-------CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456678899999999999988776555 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCC-ChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927 239 DIAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNNVGST 287 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~GAdin~~ 287 (290)
+++++|+++|++++..+..|. ||||+|+..|+.+++++|+++|||+|..
T Consensus 182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence 999999999999999998875 8899999999999999999999999875
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.80 E-value=2.6e-19 Score=166.69 Aligned_cols=118 Identities=29% Similarity=0.359 Sum_probs=107.5
Q ss_pred CcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927 165 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244 (290)
Q Consensus 165 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L 244 (290)
.+.++.|++.|++++..+..+.+ |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 104 ~~~i~~ll~~g~d~n~~~~~g~T-------~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L 176 (434)
T PHA02874 104 KDMIKTILDCGIDVNIKDAELKT-------FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176 (434)
T ss_pred HHHHHHHHHCcCCCCCCCCCCcc-------HHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence 35678888888888877665554 99999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 245 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 245 l~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 177 l~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~ 221 (434)
T PHA02874 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK 221 (434)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence 999999999999999999999999999999999999999887653
No 18
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=168.68 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=112.8
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927 156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 235 (290)
Q Consensus 156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~ 235 (290)
....+..+..+++++|++.|++++..+..+.+ |||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 172 Lh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t-------pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~ 244 (477)
T PHA02878 172 LHYATENKDQRLTELLLSYGANVNIPDKTNNS-------PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY 244 (477)
T ss_pred HHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 33445667888999999999999887766655 99999999999999999999999999999999999999975
Q ss_pred -CCHHHHHHHHHCCCCCCCCCC-CCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 236 -NRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 236 -g~~~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
++.+++++|+++|+++|.++. .|+||||+| .++.+++++|+++|||+|+.|.
T Consensus 245 ~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~ 298 (477)
T PHA02878 245 CKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS 298 (477)
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence 789999999999999999986 799999999 5688999999999999999874
No 19
>PHA02798 ankyrin-like protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=169.26 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=109.0
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc-----CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927 162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN-----GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~-----g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g 236 (290)
..+.+++++|++.|++++..+..+.+ |||+|+.. +..+++++|+++|+|+|.+|..|+||||+|+..+
T Consensus 48 ~~~~~iv~~Ll~~Gadvn~~d~~g~T-------pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~ 120 (489)
T PHA02798 48 SPSTDIVKLFINLGANVNGLDNEYST-------PLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG 120 (489)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCC-------hHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence 34678899999999999988876665 89998764 6789999999999999999999999999999875
Q ss_pred ---CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC---HHHHHHHHhCCCCCCCCC
Q 022927 237 ---RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 237 ---~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~---~~iv~~Ll~~GAdin~~~ 288 (290)
+.+++++|+++|++++.+|..|.||||+|+..++ .+++++|+++|+|++..+
T Consensus 121 ~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~ 178 (489)
T PHA02798 121 YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN 178 (489)
T ss_pred CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence 7899999999999999999999999999999888 999999999999998764
No 20
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.79 E-value=4.4e-19 Score=149.13 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=101.7
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC--CHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHc
Q 022927 159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF 235 (290)
Q Consensus 159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~ 235 (290)
....++...++.|+.. ++..+. .|.||||+|+..+ +.+++++|+++|+++|.++ ..|+||||+|+..
T Consensus 28 A~~~~~~~~vk~Li~~---~n~~~~-------~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~ 97 (209)
T PHA02859 28 YVEKDDIEGVKKWIKF---VNDCND-------LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF 97 (209)
T ss_pred HHHhCcHHHHHHHHHh---hhccCc-------cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence 3456677778888764 233333 3456999999854 8999999999999999997 5899999998764
Q ss_pred ---CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc--cCCHHHHHHHHhCCCCCCCCCC
Q 022927 236 ---NRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 236 ---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
++.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++.+|.
T Consensus 98 ~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~ 156 (209)
T PHA02859 98 NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156 (209)
T ss_pred CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence 47999999999999999999999999999875 5689999999999999998874
No 21
>PHA02946 ankyin-like protein; Provisional
Probab=99.79 E-value=5.9e-19 Score=164.28 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=97.6
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC--HHHH
Q 022927 164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR--TDIA 241 (290)
Q Consensus 164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~--~~iv 241 (290)
..+++++|++.|++++..+..+.+ |||+|+..|+.++|++||++|+++|.+|..|+||||+|+..++ .+++
T Consensus 51 ~~~iv~~Ll~~Gadvn~~d~~G~T-------pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v 123 (446)
T PHA02946 51 DERFVEELLHRGYSPNETDDDGNY-------PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERI 123 (446)
T ss_pred CHHHHHHHHHCcCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHH
Confidence 446789999999999888776665 9999999999999999999999999999999999999987654 7888
Q ss_pred HHHHHCCCCCCC-CCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 242 FILMESGANMDC-KNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 242 ~~Ll~~Ga~in~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++++|+
T Consensus 124 ~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~ 171 (446)
T PHA02946 124 NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK 171 (446)
T ss_pred HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC
Confidence 999999998885 5777888886 4455777777777777777776653
No 22
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.78 E-value=3.5e-19 Score=142.63 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=89.1
Q ss_pred ccchHHHHHHHcCCH---HHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhh
Q 022927 191 VNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 265 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~---~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A 265 (290)
.|.|+||+|+..|+. +++++|++.|+++|.+| ..|+||||+|+..++.+++++|+.+ |++++.+|..|+||||+|
T Consensus 54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A 133 (154)
T PHA02736 54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133 (154)
T ss_pred CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence 456699999999987 46889999999999998 4999999999999999999999985 999999999999999999
Q ss_pred hccCCHHHHHHHHhCCCCCCC
Q 022927 266 PVTLQYKMRQKMEEDKNNVGS 286 (290)
Q Consensus 266 ~~~g~~~iv~~Ll~~GAdin~ 286 (290)
+..|+.+++++|+++||++++
T Consensus 134 ~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 134 CERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999864
No 23
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.78 E-value=5.6e-19 Score=138.13 Aligned_cols=94 Identities=29% Similarity=0.322 Sum_probs=84.7
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM 273 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~-vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i 273 (290)
-+.||+..+.+..|+.||+..++ +|.+|.+|.||||-|+++|+.+|++.|+.+||+++.+...||||||-|+..++.++
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v 145 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV 145 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence 47889999999999988887766 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCC
Q 022927 274 RQKMEEDKNNVGSTT 288 (290)
Q Consensus 274 v~~Ll~~GAdin~~~ 288 (290)
+.+||++|||||+..
T Consensus 146 a~~LLqhgaDVnA~t 160 (228)
T KOG0512|consen 146 AGRLLQHGADVNAQT 160 (228)
T ss_pred HHHHHhccCcccccc
Confidence 999999999999864
No 24
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=152.04 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=78.1
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT 238 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~ 238 (290)
...+..+.+++|++.|++++..+.. ....|.||||+|+..++.+++++|+++|+++|..+ ..|.||||+|+..++.
T Consensus 41 ~~~~~~eivk~LL~~GAdiN~~~~~---sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~ 117 (300)
T PHA02884 41 IKFHYTDIIDAILKLGADPEAPFPL---SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCL 117 (300)
T ss_pred HHcCCHHHHHHHHHCCCCccccCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCH
Confidence 3445566677777777777665320 01123457777777777777777777777777653 4677777777777777
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927 239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 279 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 279 (290)
+++++|+++|++++.+|..|+||||+|+..++.+++.++..
T Consensus 118 eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 118 KCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence 77777777777777777777777777777666666655543
No 25
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.78 E-value=4.8e-19 Score=171.30 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=106.4
Q ss_pred CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC--HHHHHHHHHCCCCCcccccCCCcHHHHH--------
Q 022927 163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD--AAAVKKLLSEGVDANFCDKQGMSLLHLA-------- 232 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~--~~~v~~Ll~~g~~vn~~d~~g~TpLh~A-------- 232 (290)
+..+++++|++.|++++..+..+.+ |||+|+..|+ .++|++||++|+++|.+|..|+||||+|
T Consensus 190 ~~~eIVklLLe~GADVN~kD~~G~T-------PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~ 262 (764)
T PHA02716 190 VDIDILEWLCNNGVNVNLQNNHLIT-------PLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNIN 262 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccC
Confidence 3457889999999999988876665 9999999995 4899999999999999999999999975
Q ss_pred -----------------------------HHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc--cCCHHHHHHHHhCC
Q 022927 233 -----------------------------ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDK 281 (290)
Q Consensus 233 -----------------------------~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~G 281 (290)
+..|+.+++++|+++|++++.+|..|+||||+|+. .++.+++++|+++|
T Consensus 263 ~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G 342 (764)
T PHA02716 263 PEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG 342 (764)
T ss_pred HHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence 34578899999999999999999999999998764 46899999999999
Q ss_pred CCCCCCCC
Q 022927 282 NNVGSTTS 289 (290)
Q Consensus 282 Adin~~~~ 289 (290)
|++|++|.
T Consensus 343 ADIN~kD~ 350 (764)
T PHA02716 343 NDLNEPDN 350 (764)
T ss_pred CCCccCCC
Confidence 99998874
No 26
>PHA02741 hypothetical protein; Provisional
Probab=99.78 E-value=1.2e-18 Score=141.63 Aligned_cols=89 Identities=27% Similarity=0.274 Sum_probs=54.0
Q ss_pred hHHHHHHHcCC----HHHHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCChhhhhhc
Q 022927 194 EGLRDAIKNGD----AAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPV 267 (290)
Q Consensus 194 t~Lh~A~~~g~----~~~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~Ga~in~~d~~G~TpL~~A~~ 267 (290)
||||+|+..|+ .+++++|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|+.
T Consensus 62 T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~ 141 (169)
T PHA02741 62 MCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID 141 (169)
T ss_pred cHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH
Confidence 36666666665 3555666666666666553 56666666666666666666665 366666666666666666666
Q ss_pred cCCHHHHHHHHhCCC
Q 022927 268 TLQYKMRQKMEEDKN 282 (290)
Q Consensus 268 ~g~~~iv~~Ll~~GA 282 (290)
.++.+++++|++.++
T Consensus 142 ~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 142 NEDVAMMQILREIVA 156 (169)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666665544
No 27
>PHA02795 ankyrin-like protein; Provisional
Probab=99.78 E-value=5.1e-19 Score=161.09 Aligned_cols=131 Identities=18% Similarity=0.069 Sum_probs=108.4
Q ss_pred ccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927 157 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 157 ~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g 236 (290)
...+..+..+++++|++.|+......... .....+.+++|.|...++.+++++|+++|+++|.+|..|.||||+|+..|
T Consensus 154 h~A~~~~~~eIVk~Lls~Ga~~~n~~~~~-l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g 232 (437)
T PHA02795 154 FRGICKKESSVVEFILNCGIPDENDVKLD-LYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG 232 (437)
T ss_pred HHHHHcCcHHHHHHHHhcCCcccccccch-hhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC
Confidence 33445567788888888887432211100 00113446899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC--------CHHHHHHHHhCCCCCCCCC
Q 022927 237 RTDIAFILMESGANMDCKNAQGESPLDCAPVTL--------QYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g--------~~~iv~~Ll~~GAdin~~~ 288 (290)
+.+++++|+++|++++.+|..|+||||+|+..| +.+++++|+++|++++...
T Consensus 233 ~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 233 YIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK 292 (437)
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence 999999999999999999999999999999988 4699999999999998653
No 28
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=162.00 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=114.4
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCC-----------------
Q 022927 154 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV----------------- 216 (290)
Q Consensus 154 ~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~----------------- 216 (290)
.........+..+++++|++.|++++..+..+.+ |||+|+..|+.+++++|+++|+
T Consensus 37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t-------~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ 109 (434)
T PHA02874 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPH-------PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT 109 (434)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence 3344456778889999999999999877766554 9999999999999999987764
Q ss_pred ------CCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 217 ------DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 217 ------~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus 110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~ 188 (434)
T PHA02874 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN 188 (434)
T ss_pred HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence 5677888999999999999999999999999999999999999999999999999999999999999988763
No 29
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.78 E-value=8.5e-19 Score=165.11 Aligned_cols=118 Identities=21% Similarity=0.257 Sum_probs=77.2
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC------CcHHHHHHHcCC
Q 022927 164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG------MSLLHLAALFNR 237 (290)
Q Consensus 164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g------~TpLh~A~~~g~ 237 (290)
..+++++|++.|++++..+..+.+ |||+|+..|+.+++++|+++|++++..+..| .||||+|+..++
T Consensus 155 ~~~iv~~Ll~~g~din~~d~~g~t-------pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~ 227 (480)
T PHA03100 155 DLKILKLLIDKGVDINAKNRYGYT-------PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE 227 (480)
T ss_pred hHHHHHHHHHCCCCcccccCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence 566777777777777666554433 6666666666666666666666666666555 566666666666
Q ss_pred --HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 238 --TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 238 --~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||+|..|
T Consensus 228 ~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 228 ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 666666666666666666666666666666666666666666666666554
No 30
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.77 E-value=9.5e-19 Score=164.80 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=111.7
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHH--HcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927 159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g 236 (290)
....+..+++++|++.|++++..+..+.+ |||+|+ ..|+.+++++|+++|++++..|..|.||||+|+..+
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-------pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGIT-------PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCc-------hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence 34556678889999999998777665555 899999 999999999999999999999999999999999999
Q ss_pred --CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 237 --RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 237 --~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 153 ~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 206 (480)
T PHA03100 153 KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD 206 (480)
T ss_pred CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence 9999999999999999999999999999999999999999999999998765
No 31
>PHA02741 hypothetical protein; Provisional
Probab=99.76 E-value=1.7e-18 Score=140.77 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred CCCCCCCccccccchHHHHHHHcCCHHHHHHH---H---HCCCCCcccccCCCcHHHHHHHcCC----HHHHHHHHHCCC
Q 022927 180 GATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL---L---SEGVDANFCDKQGMSLLHLAALFNR----TDIAFILMESGA 249 (290)
Q Consensus 180 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L---l---~~g~~vn~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~Ga 249 (290)
..+..+.+ +||+|+..|+.+++++| + ..|++++.+|..|+||||+|+..|+ .+++++|+++|+
T Consensus 16 ~~~~~g~t-------~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga 88 (169)
T PHA02741 16 EKNSEGEN-------FFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA 88 (169)
T ss_pred ccccCCCC-------HHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 34556666 89999999999999986 6 6789999999999999999999999 589999999999
Q ss_pred CCCCCCC-CCCChhhhhhccCCHHHHHHHHh-CCCCCCCCCC
Q 022927 250 NMDCKNA-QGESPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS 289 (290)
Q Consensus 250 ~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~-~GAdin~~~~ 289 (290)
++|.++. .|+||||+|+..++.+++++|++ .|++++..|.
T Consensus 89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 130 (169)
T PHA02741 89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA 130 (169)
T ss_pred CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence 9999985 99999999999999999999997 5999998764
No 32
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.76 E-value=2e-18 Score=167.08 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=106.1
Q ss_pred CCCCcccccccCCC-CCCCCC-CCCCCccccccchHHHHHHH--cCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927 162 STSNSNFSSIFNPG-QVTNGA-TDKPRMEYEVNGEGLRDAIK--NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 237 (290)
Q Consensus 162 s~~~~~~~~Ll~~g-~~~~~~-~~~~~~~~~~~~t~Lh~A~~--~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~ 237 (290)
....+++++|++.| ++++.. +..+.+ |||+|+. .++.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 152 ~v~leiVk~LLe~G~ADIN~~~d~~G~T-------pLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~ 224 (764)
T PHA02716 152 GIDLDLIKYMVDVGIVNLNYVCKKTGYG-------ILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGN 224 (764)
T ss_pred CCCHHHHHHHHHCCCCCcccccCCCCCc-------HHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45668889999999 999887 555554 9999865 467899999999999999999999999999999995
Q ss_pred --HHHHHHHHHCCCCCCCCCCCCCChhhhh-------------------------------------hccCCHHHHHHHH
Q 022927 238 --TDIAFILMESGANMDCKNAQGESPLDCA-------------------------------------PVTLQYKMRQKME 278 (290)
Q Consensus 238 --~~iv~~Ll~~Ga~in~~d~~G~TpL~~A-------------------------------------~~~g~~~iv~~Ll 278 (290)
.+++++|+++||++|.+|..|+||||+| +..|+.+++++|+
T Consensus 225 ~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL 304 (764)
T PHA02716 225 VCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL 304 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence 4899999999999999999999999975 3457889999999
Q ss_pred hCCCCCCCCCC
Q 022927 279 EDKNNVGSTTS 289 (290)
Q Consensus 279 ~~GAdin~~~~ 289 (290)
++||++|.+|.
T Consensus 305 e~GAdIN~kD~ 315 (764)
T PHA02716 305 QPGVKLHYKDS 315 (764)
T ss_pred hCCCceeccCC
Confidence 99999998764
No 33
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.76 E-value=3.2e-18 Score=138.79 Aligned_cols=96 Identities=18% Similarity=0.311 Sum_probs=87.1
Q ss_pred hHHHHHHHcCCH----HHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH---HHHHHHCCCCCCCCC-CCCCChhhhh
Q 022927 194 EGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI---AFILMESGANMDCKN-AQGESPLDCA 265 (290)
Q Consensus 194 t~Lh~A~~~g~~----~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i---v~~Ll~~Ga~in~~d-~~G~TpL~~A 265 (290)
++||+|+..|+. +++++|++.|++++..|..|+||||+|+..|+.++ +++|+++|+++|.++ ..|+||||+|
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A 101 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA 101 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence 389999999998 56667888999999999999999999999988654 899999999999998 5899999999
Q ss_pred hccCCHHHHHHHHh-CCCCCCCCCC
Q 022927 266 PVTLQYKMRQKMEE-DKNNVGSTTS 289 (290)
Q Consensus 266 ~~~g~~~iv~~Ll~-~GAdin~~~~ 289 (290)
+..++.+++++|++ .|++++.+|.
T Consensus 102 ~~~g~~~iv~~Ll~~~gad~~~~d~ 126 (166)
T PHA02743 102 ASTKNYELAEWLCRQLGVNLGAINY 126 (166)
T ss_pred HHhCCHHHHHHHHhccCCCccCcCC
Confidence 99999999999995 8999998764
No 34
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.75 E-value=3.9e-18 Score=149.43 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccc----cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCChhhhhhccC
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTL 269 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~-d~~G~TpL~~A~~~g 269 (290)
+||+|+..|+.+++++|+++|+++|.++ ..|.||||+|+..++.+++++|+++||++|.+ +..|.||||+|+..+
T Consensus 36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence 7999999999999999999999999974 58999999999999999999999999999986 468999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCC
Q 022927 270 QYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 270 ~~~iv~~Ll~~GAdin~~~~ 289 (290)
+.+++++|+++||+++.+|.
T Consensus 116 ~~eivklLL~~GAdin~kd~ 135 (300)
T PHA02884 116 CLKCLEILLSYGADINIQTN 135 (300)
T ss_pred CHHHHHHHHHCCCCCCCCCC
Confidence 99999999999999998864
No 35
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.75 E-value=2.4e-18 Score=144.65 Aligned_cols=99 Identities=26% Similarity=0.249 Sum_probs=94.6
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
.|.+|||||++.|+..+++.||..|+.+|..+....||||+|+..|+.++++.||.+.+|+|+.|..|.||||+|+..|+
T Consensus 33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy 112 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY 112 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCC
Q 022927 271 YKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 271 ~~iv~~Ll~~GAdin~~~~ 289 (290)
..|.+-|+..||.+++.|+
T Consensus 113 dqiaedli~~ga~v~icnk 131 (448)
T KOG0195|consen 113 DQIAEDLISCGAAVNICNK 131 (448)
T ss_pred HHHHHHHHhccceeeeccc
Confidence 9999999999999998875
No 36
>PHA02795 ankyrin-like protein; Provisional
Probab=99.75 E-value=3.6e-18 Score=155.53 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=106.2
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCc-cc-----ccCCCcHHHHHHHc
Q 022927 162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FC-----DKQGMSLLHLAALF 235 (290)
Q Consensus 162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn-~~-----d~~g~TpLh~A~~~ 235 (290)
.+..+++++|+++|++++..+. .||||+|+..++.+++++|+.+|++.+ .. +..+.|++|.|+..
T Consensus 128 ~n~~eiV~~LI~~GADIn~~~~---------~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~ 198 (437)
T PHA02795 128 YVEIDIVDFMVDHGAVIYKIEC---------LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP 198 (437)
T ss_pred CCCHHHHHHHHHCCCCCCCCCC---------CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence 5778899999999999987432 359999999999999999999998543 22 13478999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
++.+++++|+++||++|.+|..|.||||+|+..|+.+++++|+++||++|++|.
T Consensus 199 ~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~ 252 (437)
T PHA02795 199 TVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS 252 (437)
T ss_pred CHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999874
No 37
>PHA03095 ankyrin-like protein; Provisional
Probab=99.75 E-value=3e-18 Score=160.98 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=97.0
Q ss_pred CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCH--HHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927 163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA--AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 240 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i 240 (290)
....+++.|++.|++++..+..+.+ |||+|+..|+. .+++.|++.|+++|.+|..|+||||+|+..|+.++
T Consensus 200 ~~~~i~~~Ll~~g~~~~~~d~~g~t-------pLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~ 272 (471)
T PHA03095 200 PRARIVRELIRAGCDPAATDMLGNT-------PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA 272 (471)
T ss_pred CcHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 4456677788888888777665554 89998888865 57788888899999888889999999999899999
Q ss_pred HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927 241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin 285 (290)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 273 v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 273 CRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 999999999999888899999999999999999999998888875
No 38
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.74 E-value=3.4e-18 Score=152.11 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=112.7
Q ss_pred cccCCCCCCCcccccccC-CCCCCCCCCCCC-CccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHH
Q 022927 156 TARSRGSTSNSNFSSIFN-PGQVTNGATDKP-RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 233 (290)
Q Consensus 156 ~~~~~~s~~~~~~~~Ll~-~g~~~~~~~~~~-~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~ 233 (290)
..-.+..+-.+++++|++ .++++....... ....-.|.+||..|+..|++++|+.|+++|+++|.......|||-.|+
T Consensus 46 L~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraAC 125 (615)
T KOG0508|consen 46 LLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAAC 125 (615)
T ss_pred eeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHH
Confidence 334457788889999987 455554322111 011224566899999999999999999999999998888899999999
Q ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 234 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 234 ~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
.-|+.+++++|+++|+|+++.|..|.|.||+|+..|+.+|+++|++.|||+|+++
T Consensus 126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks 180 (615)
T KOG0508|consen 126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKS 180 (615)
T ss_pred hcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhc
Confidence 9999999999999999999999999999999999999999999999999999875
No 39
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.74 E-value=7.7e-18 Score=159.25 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCC-cccccCCCcHHHHHHHc--CC
Q 022927 164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALF--NR 237 (290)
Q Consensus 164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~v-n~~d~~g~TpLh~A~~~--g~ 237 (290)
..+++++|++.|++++..+..+.+ |||.|+.. ++.+++++|+++|+|+ +.+|..|+||||+|+.. ++
T Consensus 87 ~~~iv~~Ll~~Gadin~~d~~g~t-------pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~ 159 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKTFNGVS-------PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK 159 (494)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC
Confidence 346789999999999988876655 99988765 6789999999999999 88999999999998764 68
Q ss_pred HHHHHHHHHCCCCCCC-CCCCCCChhhhhhcc----CCHHHHHHHHhCCCCCCCCC
Q 022927 238 TDIAFILMESGANMDC-KNAQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 238 ~~iv~~Ll~~Ga~in~-~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GAdin~~~ 288 (290)
.+++++|+++|++++. .+..|.||||+|+.. ++.+++++|+++||++|..|
T Consensus 160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~ 215 (494)
T PHA02989 160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN 215 (494)
T ss_pred HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence 9999999999999998 688999999998765 48999999999999999876
No 40
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.74 E-value=7.5e-18 Score=159.36 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=97.6
Q ss_pred CCCcccccccCCCCCC-CCCCCCCCccccccchHHHHHHHc--CCHHHHHHHHHCCCCCcc-cccCCCcHHHHHHHcC--
Q 022927 163 TSNSNFSSIFNPGQVT-NGATDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFN-- 236 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~g~~vn~-~d~~g~TpLh~A~~~g-- 236 (290)
+..+++++|++.|+++ +..+..+.+ |||+|+.. ++.+++++|+++|++++. .+..|.||||+|+..+
T Consensus 122 ~~~eiv~~Ll~~Gadin~~~d~~g~t-------pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~ 194 (494)
T PHA02989 122 NNCDMLRFLLSKGINVNDVKNSRGYN-------LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID 194 (494)
T ss_pred CcHHHHHHHHHCCCCcccccCCCCCC-------HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc
Confidence 4567889999999998 666655554 89988764 578899999999999888 5778999999887654
Q ss_pred --CHHHHHHHHHCCCCCCC--------------------------------------CCCCCCChhhhhhccCCHHHHHH
Q 022927 237 --RTDIAFILMESGANMDC--------------------------------------KNAQGESPLDCAPVTLQYKMRQK 276 (290)
Q Consensus 237 --~~~iv~~Ll~~Ga~in~--------------------------------------~d~~G~TpL~~A~~~g~~~iv~~ 276 (290)
+.+++++|+++|++++. +|..|+||||+|+..|+.+++++
T Consensus 195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~ 274 (494)
T PHA02989 195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNY 274 (494)
T ss_pred cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHH
Confidence 78888888888877654 44568999999999999999999
Q ss_pred HHhCCCCCCCCCC
Q 022927 277 MEEDKNNVGSTTS 289 (290)
Q Consensus 277 Ll~~GAdin~~~~ 289 (290)
|+++|||+|++|.
T Consensus 275 LL~~Gadin~~d~ 287 (494)
T PHA02989 275 LLKLGDDIYNVSK 287 (494)
T ss_pred HHHcCCCccccCC
Confidence 9999999988764
No 41
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.74 E-value=8.3e-18 Score=164.96 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC-HHHHH
Q 022927 164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAF 242 (290)
Q Consensus 164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~-~~iv~ 242 (290)
...++++|++.|++++..+..+. ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..+++
T Consensus 354 ~~~iv~lLl~~gadin~~d~~G~-------TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk 426 (682)
T PHA02876 354 NKDIVITLLELGANVNARDYCDK-------TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK 426 (682)
T ss_pred cHHHHHHHHHcCCCCccCCCCCC-------CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence 44556777788888877766555 49999999999999999999999999999999999999987766 56789
Q ss_pred HHHHCCCCCCCCCCCCCChhhhhhccC-CHHHHHHHHhCCCCCCCCCC
Q 022927 243 ILMESGANMDCKNAQGESPLDCAPVTL-QYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 243 ~Ll~~Ga~in~~d~~G~TpL~~A~~~g-~~~iv~~Ll~~GAdin~~~~ 289 (290)
+|+++|+++|.+|..|+||||+|+..| +.+++++|+++|||+|..|.
T Consensus 427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~ 474 (682)
T PHA02876 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI 474 (682)
T ss_pred HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999999999999876 68999999999999998874
No 42
>PHA02730 ankyrin-like protein; Provisional
Probab=99.74 E-value=6.5e-18 Score=160.83 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=102.8
Q ss_pred CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC----HHHHHHHHHCCC--CCcccccCCCcHHHH---HH
Q 022927 163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGV--DANFCDKQGMSLLHL---AA 233 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~g~--~vn~~d~~g~TpLh~---A~ 233 (290)
...+++++|+++|++++.. .. |.||||+|+..++ .+++++||++|+ ++|.+|..|.||||. |.
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~-------G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~ 428 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TD-------NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR 428 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CC-------CCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence 4578889999999999963 33 4569999998875 899999999997 699999999999984 33
Q ss_pred HcC---------CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 234 LFN---------RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 234 ~~g---------~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
..+ ..+++++|+.+||++|.+|..|+||||+|+..++.+++++|+++||++|+.|.
T Consensus 429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~ 493 (672)
T PHA02730 429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR 493 (672)
T ss_pred hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence 232 23579999999999999999999999999999999999999999999999873
No 43
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=8e-18 Score=166.30 Aligned_cols=109 Identities=27% Similarity=0.304 Sum_probs=64.9
Q ss_pred ccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCC
Q 022927 169 SSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 248 (290)
Q Consensus 169 ~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~G 248 (290)
+.+++.|+.++.++..+.+ |||.|+.+|++.+|++||++|+|++.+|+.|+||||.|+..|+.+|+++|+++|
T Consensus 524 ~~l~~~ga~v~~~~~r~~T-------pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G 596 (1143)
T KOG4177|consen 524 KILLEHGANVDLRTGRGYT-------PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG 596 (1143)
T ss_pred HHHhhcCCceehhcccccc-------hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence 4444444444444444333 566666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927 249 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV 284 (290)
Q Consensus 249 a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi 284 (290)
|++|..|.+|.|||++|++.|+++++++|+..|++.
T Consensus 597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP 632 (1143)
T ss_pred CCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence 666666666666666666666666666666666553
No 44
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.73 E-value=5.1e-19 Score=121.94 Aligned_cols=59 Identities=31% Similarity=0.597 Sum_probs=43.2
Q ss_pred ccccccccCCCCCccccccccccccceecCCCCCCccccc--CCCCCCcccccccchhhhc
Q 022927 4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLP--QFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~--~~~~~~~~rvC~~C~~~~~ 62 (290)
....|+.|+++|++++||||||.||.|||..|+.++..++ ..+...++|||+.||..++
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 4568999999999999999999999999999999999887 5566799999999999875
No 45
>PHA02798 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.2e-17 Score=156.00 Aligned_cols=117 Identities=16% Similarity=0.271 Sum_probs=106.3
Q ss_pred CcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC---CHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC---H
Q 022927 165 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR---T 238 (290)
Q Consensus 165 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~---~ 238 (290)
.+++++|++.|++++..+..+.+ |||+|+..+ +.+++++|+++|++++..|..|.||||+|+..++ .
T Consensus 89 ~~iv~~Ll~~GadiN~~d~~G~T-------pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~ 161 (489)
T PHA02798 89 LDIVKILIENGADINKKNSDGET-------PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI 161 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCcCc-------HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence 57889999999999998877665 999999986 7899999999999999999999999999999988 9
Q ss_pred HHHHHHHHCCCCCCCCC-CCCCChhhhhhc----cCCHHHHHHHHhCCCCCCCCC
Q 022927 239 DIAFILMESGANMDCKN-AQGESPLDCAPV----TLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~----~g~~~iv~~Ll~~GAdin~~~ 288 (290)
+++++|+++|++++.++ ..|.||||.++. .++.+++++|+++|++++..+
T Consensus 162 ~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~ 216 (489)
T PHA02798 162 EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN 216 (489)
T ss_pred HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence 99999999999999885 579999998865 458999999999999998765
No 46
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.72 E-value=2.1e-17 Score=116.12 Aligned_cols=92 Identities=25% Similarity=0.281 Sum_probs=85.7
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 274 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv 274 (290)
-+.|++++|.++-|+..+..|.++|..- .|++|||||+-+|+.+++++|+..||+|+.+|++|-|||.-|+..||.++|
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV 83 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV 83 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence 5899999999999999999998888654 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCC
Q 022927 275 QKMEEDKNNVGST 287 (290)
Q Consensus 275 ~~Ll~~GAdin~~ 287 (290)
++||+.|||.-..
T Consensus 84 klLL~~GAdrt~~ 96 (117)
T KOG4214|consen 84 KLLLQNGADRTIH 96 (117)
T ss_pred HHHHHcCccccee
Confidence 9999999986543
No 47
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.71 E-value=1.1e-17 Score=165.23 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=119.0
Q ss_pred CccccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHH
Q 022927 152 KTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHL 231 (290)
Q Consensus 152 ~~~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~ 231 (290)
......-.+..+..+.++.|++.++..+...+.+.+ +||.|...+...+++.++++|++++.++.+|.||||.
T Consensus 474 G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~-------~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~ 546 (1143)
T KOG4177|consen 474 GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLT-------PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHV 546 (1143)
T ss_pred cCcchhhhhccCCchHHHHhhhcCCccCccchhccc-------hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHH
Confidence 344455567888889999999998777666655554 8999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 232 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 232 A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
|+.+|+.++|++||++|||++.++..|+||||.|+..|+.+|+++|+++||++|+.|.
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~ 604 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL 604 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999874
No 48
>PHA02917 ankyrin-like protein; Provisional
Probab=99.71 E-value=3.3e-17 Score=158.67 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=89.4
Q ss_pred ccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC-------
Q 022927 167 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN------- 236 (290)
Q Consensus 167 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g------- 236 (290)
.++.|+..|...+..+..+.+ |||+|+.. |+.++|++||+.|++++..|..|+||||+|+..|
T Consensus 14 ~~~~l~~~~~~~~~~d~~g~t-------~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~ 86 (661)
T PHA02917 14 ELKQMLRDRDPNDTRNQFKNN-------ALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKD 86 (661)
T ss_pred HHHHHHhccCcccccCCCCCc-------HHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence 345566666666555555444 78876554 6688888888888888887888888888776533
Q ss_pred ----------------------------CHHHHHHHHHCCCCCCCCCCCCCChhhhh--hccCCHHHHHHHHhCCCCCCC
Q 022927 237 ----------------------------RTDIAFILMESGANMDCKNAQGESPLDCA--PVTLQYKMRQKMEEDKNNVGS 286 (290)
Q Consensus 237 ----------------------------~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A--~~~g~~~iv~~Ll~~GAdin~ 286 (290)
+.+++++|+++|+|+|.+|..|+||||+| +..|+.+++++|+++|||+|.
T Consensus 87 ~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~ 166 (661)
T PHA02917 87 IAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY 166 (661)
T ss_pred HHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc
Confidence 56788999999999999999999999954 457899999999999999986
Q ss_pred CC
Q 022927 287 TT 288 (290)
Q Consensus 287 ~~ 288 (290)
.|
T Consensus 167 ~d 168 (661)
T PHA02917 167 ED 168 (661)
T ss_pred cc
Confidence 54
No 49
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-17 Score=156.43 Aligned_cols=124 Identities=21% Similarity=0.232 Sum_probs=112.7
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHH-CC-CCCcccccCCCcHHHHHHHcC
Q 022927 159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLS-EG-VDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~-~g-~~vn~~d~~g~TpLh~A~~~g 236 (290)
.+..|....+..|+..|++++.++.++.+ |||.|+.+|++..|+.||+ .| ..+|..|..|.||||+|+..|
T Consensus 280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s-------pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g 352 (929)
T KOG0510|consen 280 AARQGGPESVDNLLGFGASINSKNKDEES-------PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG 352 (929)
T ss_pred HHHcCChhHHHHHHHcCCcccccCCCCCC-------chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence 36778888999999999999999877666 8999999999999999998 54 458889999999999999999
Q ss_pred CHHHHHHHHHCCCCCC---CCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 237 RTDIAFILMESGANMD---CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 237 ~~~iv~~Ll~~Ga~in---~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+.+++++||+.||+.. ..|.+|.||||.|+..|+..+|++|+.+||++...|+
T Consensus 353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~ 408 (929)
T KOG0510|consen 353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK 408 (929)
T ss_pred HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence 9999999999999987 4599999999999999999999999999999977654
No 50
>PHA02946 ankyin-like protein; Provisional
Probab=99.70 E-value=3.4e-17 Score=152.56 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=64.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCChhhhhhccC--
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR--TDIAFILMESGANMDCKNAQGESPLDCAPVTL-- 269 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~--~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g-- 269 (290)
|||| |+..|+.+++++|++.|++++.+|..|+||||+|+..++ .+++++|+++|++++.+|.+|+||||+|+..+
T Consensus 143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~ 221 (446)
T PHA02946 143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVK 221 (446)
T ss_pred cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCC
Confidence 3554 444455666666666666666667777777777665443 56777777777777777777888888777764
Q ss_pred CHHHHHHHHhCCCCCCCCCC
Q 022927 270 QYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 270 ~~~iv~~Ll~~GAdin~~~~ 289 (290)
+.+++++|++ |+++|.+|.
T Consensus 222 ~~~iv~lLl~-gadin~~d~ 240 (446)
T PHA02946 222 NVDIINLLLP-STDVNKQNK 240 (446)
T ss_pred cHHHHHHHHc-CCCCCCCCC
Confidence 6777777774 777777664
No 51
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.70 E-value=3.2e-17 Score=128.38 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=99.7
Q ss_pred CCCCCcccccccCCCCC-CCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 161 GSTSNSNFSSIFNPGQV-TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 161 ~s~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
.......++.||+..++ +|.++..+.+ |||.|+++|+.++|+.|+..|++++.+...||||||-|+..++.+
T Consensus 72 e~nrl~eV~~lL~e~an~vNtrD~D~YT-------pLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 72 EKNRLTEVQRLLSEKANHVNTRDEDEYT-------PLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred hhccHHHHHHHHHhcccccccccccccc-------HHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence 34445566677765554 6666666555 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCC-HHHHHHHHh-CCCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQ-YKMRQKMEE-DKNNVGSTT 288 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~-~~iv~~Ll~-~GAdin~~~ 288 (290)
++-+||++|+|||+.....+||||+|+...+ ...+++|+. .++++..++
T Consensus 145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n 195 (228)
T KOG0512|consen 145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN 195 (228)
T ss_pred HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence 9999999999999999999999999997665 445666654 466655443
No 52
>PHA02917 ankyrin-like protein; Provisional
Probab=99.70 E-value=4.2e-17 Score=157.92 Aligned_cols=119 Identities=10% Similarity=0.147 Sum_probs=102.3
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHH--HcCCHHHHHHHHHCCCCCccccc---CC---------
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDK---QG--------- 225 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~g~~vn~~d~---~g--------- 225 (290)
+..+..+++++|++.|++++..+..+.+ |||+|+ ..|+.+++++||++|+++|..|. .|
T Consensus 111 ~~~~~~e~vk~Ll~~Gadin~~d~~g~T-------~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~ 183 (661)
T PHA02917 111 SKNVDVDLIKVLVEHGFDLSVKCENHRS-------VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR 183 (661)
T ss_pred hhcCCHHHHHHHHHcCCCCCccCCCCcc-------HHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence 3445678899999999999998877766 899654 57899999999999999987653 34
Q ss_pred --CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH--HHHHHHHhCCCCCCC
Q 022927 226 --MSLLHLAAL-----------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY--KMRQKMEEDKNNVGS 286 (290)
Q Consensus 226 --~TpLh~A~~-----------~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~--~iv~~Ll~~GAdin~ 286 (290)
.||||+|+. .++.+++++|+++|+++|.+|.+|+||||+|+..|+. ++|++|++ |+++++
T Consensus 184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~ 258 (661)
T PHA02917 184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA 258 (661)
T ss_pred ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence 599999986 4689999999999999999999999999999999985 79999985 988764
No 53
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.69 E-value=2.2e-17 Score=142.81 Aligned_cols=98 Identities=21% Similarity=0.330 Sum_probs=83.1
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCC-CCCcccc--------------------------------------cCCCcHHHH
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCD--------------------------------------KQGMSLLHL 231 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d--------------------------------------~~g~TpLh~ 231 (290)
.|.|+|||++..+++++|+.||+.| +++|.++ ..|+|+||+
T Consensus 267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML 346 (452)
T KOG0514|consen 267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML 346 (452)
T ss_pred CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence 3445899999999999999999887 3444432 346778888
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC-CCCCCCCC
Q 022927 232 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED-KNNVGSTT 288 (290)
Q Consensus 232 A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAdin~~~ 288 (290)
|+.+|+.++++.||..|||||++|.+|.|+|+.|+++||.||+++||.. +.|+..+|
T Consensus 347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD 404 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD 404 (452)
T ss_pred hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence 8899999999999999999999999999999999999999999999975 77776655
No 55
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=155.78 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=73.6
Q ss_pred cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC-CHHHHHHHHHCCCCCcccccCCCcHHHHHHHc-CCHHHHHH
Q 022927 166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFI 243 (290)
Q Consensus 166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g-~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~-g~~~iv~~ 243 (290)
.++++|++.|++++..+..+.+ |||+|+..| +.+++++|+..|++++..|..|+||||+|+.. ++.+++++
T Consensus 288 ~iv~lLl~~gadin~~d~~g~T-------pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~l 360 (682)
T PHA02876 288 RLVPKLLERGADVNAKNIKGET-------PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT 360 (682)
T ss_pred HHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHH
Confidence 3567777778777766655444 666666666 45666666666666666666666666666553 34556666
Q ss_pred HHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 244 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 244 Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 361 Ll~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~ 405 (682)
T PHA02876 361 LLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS 405 (682)
T ss_pred HHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence 666666666666666666666666666666666666666665543
No 56
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=137.86 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=103.4
Q ss_pred CCCcccccccCCCC-CCCCCCCCCCccc-------------------------------cccchHHHHHHHcCCHHHHHH
Q 022927 163 TSNSNFSSIFNPGQ-VTNGATDKPRMEY-------------------------------EVNGEGLRDAIKNGDAAAVKK 210 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~-~~~~~~~~~~~~~-------------------------------~~~~t~Lh~A~~~g~~~~v~~ 210 (290)
++..+++.||+.|. +++..+..|.++. ..|+|+||+|+..|+.++|+.
T Consensus 279 aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~ 358 (452)
T KOG0514|consen 279 ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKA 358 (452)
T ss_pred cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHH
Confidence 35677788888874 5777776655443 247999999999999999999
Q ss_pred HHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927 211 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 279 (290)
Q Consensus 211 Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 279 (290)
||..|+|||++|.+|.|+||.|+++||.+|+++||.. ++|+...|.+|.|+|.+|...||.+|.-+|-.
T Consensus 359 LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa 428 (452)
T KOG0514|consen 359 LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA 428 (452)
T ss_pred HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence 9999999999999999999999999999999999987 89999999999999999999999999887754
No 57
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.65 E-value=1.5e-16 Score=127.26 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=79.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCCC--C-----CcccccCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCCCC-CCCC
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEGV--D-----ANFCDKQGMSLLHLAALFNRTD---IAFILMESGANMDCKN-AQGE 259 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~--~-----vn~~d~~g~TpLh~A~~~g~~~---iv~~Ll~~Ga~in~~d-~~G~ 259 (290)
.|.||||+|+..|+.. .+++..+. + ++..|..|+||||+|+..|+.+ ++++|+++|++++.++ ..|+
T Consensus 16 ~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~ 93 (154)
T PHA02736 16 EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN 93 (154)
T ss_pred CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence 4566999999999843 33332222 2 3456889999999999999874 6889999999999998 4899
Q ss_pred ChhhhhhccCCHHHHHHHHh-CCCCCCCCCC
Q 022927 260 SPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS 289 (290)
Q Consensus 260 TpL~~A~~~g~~~iv~~Ll~-~GAdin~~~~ 289 (290)
||||+|+..|+.+++++|++ .|++++.+|.
T Consensus 94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~ 124 (154)
T PHA02736 94 TPLHIAVYTQNYELATWLCNQPGVNMEILNY 124 (154)
T ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence 99999999999999999998 5999998764
No 58
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.7e-17 Score=152.95 Aligned_cols=62 Identities=35% Similarity=0.712 Sum_probs=58.0
Q ss_pred ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCC
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD 67 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~ 67 (290)
..|++|..+|++|+|+||||+||+|||+.|+.+...+|.+|++++||||+.||..+......
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcccc
Confidence 57999999999999999999999999999999999999999999999999999988766544
No 59
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.65 E-value=3.5e-17 Score=132.75 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=109.3
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
+.-+....+++||+.|++++.......+ +|..|+..|..++|++||+.+.|+|..|.+|-|||.||+..|+.+
T Consensus 168 aa~G~i~vV~fLL~~GAdp~~lgk~res-------ALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvk 240 (296)
T KOG0502|consen 168 AAKGHIPVVQFLLNSGADPDALGKYRES-------ALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVK 240 (296)
T ss_pred HhcCchHHHHHHHHcCCChhhhhhhhhh-------hHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHH
Confidence 4556677889999999999887665554 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
+++.||+.||+++..+..|++++.+|+..|+. +|+..++.-+..+.+|
T Consensus 241 cve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~ 288 (296)
T KOG0502|consen 241 CVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD 288 (296)
T ss_pred HHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998 8888888777665554
No 60
>PHA02792 ankyrin-like protein; Provisional
Probab=99.65 E-value=5e-16 Score=146.65 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=101.8
Q ss_pred CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC--CcHHHHHHHcCCH--
Q 022927 163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG--MSLLHLAALFNRT-- 238 (290)
Q Consensus 163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g--~TpLh~A~~~g~~-- 238 (290)
-..+++++|++.|++..... ....++.|+..|+.++|++|+++|+++|.+|..| .||||+|......
T Consensus 319 v~ieiIK~LId~Ga~~~r~~---------~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v 389 (631)
T PHA02792 319 VYINVIKCMIDEGATLYRFK---------HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDV 389 (631)
T ss_pred ccHHHHHHHHHCCCccccCC---------cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhH
Confidence 45677799999999874211 1226999999999999999999999999999775 6999998776654
Q ss_pred -HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 239 -DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 239 -~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
+++++|+++||++|.+|..|+||||+|+..++.+++++|+++||++|++|.
T Consensus 390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~ 441 (631)
T PHA02792 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK 441 (631)
T ss_pred HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 468899999999999999999999999999999999999999999998874
No 61
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.64 E-value=9.6e-16 Score=152.99 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=86.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc-----
Q 022927 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV----- 267 (290)
Q Consensus 193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~----- 267 (290)
.++||.|+..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 458999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred --------------------------cCCHHHHHHHHhCCCCCCCCCC
Q 022927 268 --------------------------TLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 268 --------------------------~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
.|+.+++++|+++|+|+|++|.
T Consensus 606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~ 653 (823)
T PLN03192 606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH 653 (823)
T ss_pred HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence 4555666677788888887764
No 62
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.63 E-value=4.9e-16 Score=112.51 Aligned_cols=83 Identities=31% Similarity=0.401 Sum_probs=72.3
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927 162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 241 (290)
Q Consensus 162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv 241 (290)
.++.+.++.|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus 7 ~~~~~~~~~ll~~~~~~~~-----------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 7 NGNLEILKFLLEKGADINL-----------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp TTTHHHHHHHHHTTSTTTS-----------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHCcCCCCC-----------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 4556778888988877665 33499999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCC
Q 022927 242 FILMESGANMDCKN 255 (290)
Q Consensus 242 ~~Ll~~Ga~in~~d 255 (290)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999999876
No 63
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.63 E-value=1.6e-15 Score=147.57 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=90.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 274 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv 274 (290)
.|+.|+..|+.+.+++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-------CCCCCCCC
Q 022927 275 QKMEED-------KNNVGSTT 288 (290)
Q Consensus 275 ~~Ll~~-------GAdin~~~ 288 (290)
++|+++ ||+++..+
T Consensus 165 ~~Ll~~~~~~~~~ga~~~~~~ 185 (664)
T PTZ00322 165 QLLSRHSQCHFELGANAKPDS 185 (664)
T ss_pred HHHHhCCCcccccCCCCCccc
Confidence 999999 88776654
No 64
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.63 E-value=4.7e-16 Score=146.42 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCCCccccccCCCCCCCcccccccCCCCCCCCCC--------CCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 022927 149 KPKKTENTARSRGSTSNSNFSSIFNPGQVTNGAT--------DKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF 220 (290)
Q Consensus 149 ~~~~~~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~--------~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~ 220 (290)
.+.+..+.......++.+.++.+|+.|....... ..-...+.+|.||||+|+..|+.+.++.|+..|++++.
T Consensus 222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~ 301 (929)
T KOG0510|consen 222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS 301 (929)
T ss_pred cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence 3344555556667788888888888776543222 01122344677899999999999999999999999999
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHH-CC-CCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927 221 CDKQGMSLLHLAALFNRTDIAFILME-SG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 221 ~d~~g~TpLh~A~~~g~~~iv~~Ll~-~G-a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin 285 (290)
++.++.||||.|+.+|+++.++-||+ .| ..+|..|..|.||||+|+..||..++++||+.||+.+
T Consensus 302 kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 302 KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred cCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence 99999999999999999999999998 54 5678899999999999999999999999999999876
No 65
>PHA02792 ankyrin-like protein; Provisional
Probab=99.62 E-value=8.4e-16 Score=145.14 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=104.6
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHH---HHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCDKQGMSLLHLAALFN 236 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g 236 (290)
+..++.+.+++|++.|++++..+..+. +.||||+|......+ ++++|+++|+++|.+|..|+||||+|+..+
T Consensus 347 a~~gn~eIVelLIs~GADIN~kD~~g~-----~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~ 421 (631)
T PHA02792 347 FDNRDPKVVEYILKNGNVVVEDDDNII-----NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH 421 (631)
T ss_pred HHcCCHHHHHHHHHcCCchhhhcCCCC-----ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence 456778899999999999988776542 236899988776653 688899999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCChhhhhhc----------cCCHHHHHHHHhCCCCCC
Q 022927 237 RTDIAFILMESGANMDCKNAQGESPLDCAPV----------TLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~----------~g~~~iv~~Ll~~GAdin 285 (290)
+.+++++|+++|++++.+|..|+|||++|+. ....+++++||++|.+++
T Consensus 422 n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 422 SVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence 9999999999999999999999999999975 223677999999998875
No 66
>PHA02730 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=145.56 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=98.1
Q ss_pred CcccccccCCCC--CCCCCCCCCCccccccchHHHH---HHHcC---------CHHHHHHHHHCCCCCcccccCCCcHHH
Q 022927 165 NSNFSSIFNPGQ--VTNGATDKPRMEYEVNGEGLRD---AIKNG---------DAAAVKKLLSEGVDANFCDKQGMSLLH 230 (290)
Q Consensus 165 ~~~~~~Ll~~g~--~~~~~~~~~~~~~~~~~t~Lh~---A~~~g---------~~~~v~~Ll~~g~~vn~~d~~g~TpLh 230 (290)
.+++++|++.|+ +++..+..+.+ |||. |...+ ..+++++|+.+|+++|.+|..|+||||
T Consensus 395 ~eIvelLIs~Ga~~dIN~kd~~G~T-------~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh 467 (672)
T PHA02730 395 VNVVRFIVENNGHMAINHVSNNGRL-------CMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLY 467 (672)
T ss_pred HHHHHHHHHcCCCccccccccCCCc-------hHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHH
Confidence 588899999987 47766665554 8984 33232 235799999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCC-CCCChhhhhhc--cCCHHHHHHHHhCCCCCC
Q 022927 231 LAALFNRTDIAFILMESGANMDCKNA-QGESPLDCAPV--TLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 231 ~A~~~g~~~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~--~g~~~iv~~Ll~~GAdin 285 (290)
+|+..++.+++++|+++||++|.+|. .|+||||+|+. .++.+++++|+++|++++
T Consensus 468 ~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 468 YAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 99999999999999999999999997 59999999987 478999999999999875
No 67
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.62 E-value=4.5e-16 Score=102.63 Aligned_cols=55 Identities=36% Similarity=0.634 Sum_probs=33.5
Q ss_pred HHHCC-CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927 211 LLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265 (290)
Q Consensus 211 Ll~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A 265 (290)
||++| +++|.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 67888 99999999999999999999999999999999999999999999999987
No 68
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.7e-15 Score=133.61 Aligned_cols=92 Identities=27% Similarity=0.398 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHH
Q 022927 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ 275 (290)
Q Consensus 196 Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~ 275 (290)
|.-|+..|.+++|+..+..--|+...+..|.|+||-|+..||++||+|||++|+++|+.|.+||||||.|+..++..|++
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck 633 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK 633 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence 56799999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCC
Q 022927 276 KMEEDKNNVGST 287 (290)
Q Consensus 276 ~Ll~~GAdin~~ 287 (290)
.|+++||-|-+.
T Consensus 634 qLVe~GaavfAs 645 (752)
T KOG0515|consen 634 QLVESGAAVFAS 645 (752)
T ss_pred HHHhccceEEee
Confidence 999999987553
No 69
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=6.7e-16 Score=139.67 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=102.9
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCc---------------------
Q 022927 161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN--------------------- 219 (290)
Q Consensus 161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn--------------------- 219 (290)
...+..++++|++.|++++..+..+|+ |||.|+..|+..++++||..|+++-
T Consensus 82 id~~~e~v~~l~e~ga~Vn~~d~e~wt-------Plhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~ 154 (527)
T KOG0505|consen 82 IDDNLEMVKFLVENGANVNAQDNEGWT-------PLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV 154 (527)
T ss_pred hcccHHHHHHHHHhcCCccccccccCC-------cchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHH
Confidence 344567788888999998888877766 7999988899999988888776422
Q ss_pred --------------------------------------ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCh
Q 022927 220 --------------------------------------FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 261 (290)
Q Consensus 220 --------------------------------------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~Tp 261 (290)
..+..|-|.||.|+..|..+++++|++.|.+++++|.+||||
T Consensus 155 l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtP 234 (527)
T KOG0505|consen 155 LETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTP 234 (527)
T ss_pred HHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCc
Confidence 123347899999999999999999999999999999999999
Q ss_pred hhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 262 LDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 262 L~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
||.|+..|+.+++++|+++|+++++.++
T Consensus 235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~ 262 (527)
T KOG0505|consen 235 LHAAAHWGQEDACELLVEHGADMDAKTK 262 (527)
T ss_pred ccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence 9999999999999999999999988764
No 70
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.60 E-value=1.3e-14 Score=110.38 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=90.2
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
.|.|+||+|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..++
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 85 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN 85 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence 45569999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCC
Q 022927 271 YKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 271 ~~iv~~Ll~~GAdin~~~~ 289 (290)
.+++++|+++|.+++..+.
T Consensus 86 ~~~~~~L~~~~~~~~~~~~ 104 (126)
T cd00204 86 LDVVKLLLKHGADVNARDK 104 (126)
T ss_pred HHHHHHHHHcCCCCcccCC
Confidence 9999999999988776653
No 71
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.59 E-value=3.4e-16 Score=103.66 Aligned_cols=54 Identities=33% Similarity=0.703 Sum_probs=49.8
Q ss_pred ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchh
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 59 (290)
..|+.|+++|+++.||||||.||++||..|+.++..++.....+++|||..||+
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 568999999999999999999999999999999999887555799999999986
No 72
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.57 E-value=2.1e-15 Score=127.04 Aligned_cols=120 Identities=24% Similarity=0.290 Sum_probs=104.5
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
+..+...+++.|+..|+.+|..+....+ |||+|+..|+.++|+.||+..+|+|..+..|+||||||+..|.-.
T Consensus 42 akegh~aivemll~rgarvn~tnmgddt-------plhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydq 114 (448)
T KOG0195|consen 42 AKEGHVAIVEMLLSRGARVNSTNMGDDT-------PLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQ 114 (448)
T ss_pred hhcccHHHHHHHHhcccccccccCCCCc-------chhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHH
Confidence 3455567788999999999987755444 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS 286 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~ 286 (290)
+++-|+..||.+++.|++|.|||..|.-.-...+.++..++|-++|.
T Consensus 115 iaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr 161 (448)
T KOG0195|consen 115 IAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR 161 (448)
T ss_pred HHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999998755455556666677887764
No 73
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.57 E-value=4.8e-16 Score=139.22 Aligned_cols=57 Identities=28% Similarity=0.613 Sum_probs=54.0
Q ss_pred ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccc-----cchhh
Q 022927 4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA-----DCFNS 60 (290)
Q Consensus 4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~-----~C~~~ 60 (290)
.+.+||.|+.+|++|+||||||+||.|||++|+...+++|.+|+.+.+|||. .||..
T Consensus 900 ~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred cchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence 4679999999999999999999999999999999999999999999999999 88765
No 74
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.56 E-value=6.6e-15 Score=96.32 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHH
Q 022927 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 278 (290)
Q Consensus 225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll 278 (290)
|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456666666666666666666666666666666666666666666666666664
No 75
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.55 E-value=6e-16 Score=133.31 Aligned_cols=59 Identities=25% Similarity=0.582 Sum_probs=54.5
Q ss_pred ccccccccCC-CCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 4 HDLQNLRLIS-HIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 4 ~~~~~~~c~~-~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
+..+||.|+. .|+++.||||||+||.|||..|+.+++.+|... .+++|||+.||..+..
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-TKPIRVCDICFEELEK 226 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-CCCceecHHHHHHHhc
Confidence 3467999999 999999999999999999999999999999887 7999999999999964
No 76
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.54 E-value=9.1e-15 Score=102.93 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=81.2
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927 162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 241 (290)
Q Consensus 162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv 241 (290)
.+..+.++..+..|.++|..- .+++|||+|+-+|.+++++||+..|++++.+|++|.|||..|++.||.++|
T Consensus 12 NG~~DeVk~~v~~g~nVn~~~--------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV 83 (117)
T KOG4214|consen 12 NGEIDEVKQSVNEGLNVNEIY--------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV 83 (117)
T ss_pred cCcHHHHHHHHHccccHHHHh--------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence 344555666666676655433 345699999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCChhhhh
Q 022927 242 FILMESGANMDCKNAQGESPLDCA 265 (290)
Q Consensus 242 ~~Ll~~Ga~in~~d~~G~TpL~~A 265 (290)
++||+.||+-..+..+|.+.+..+
T Consensus 84 klLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 84 KLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHcCcccceeCCCchhHHhhc
Confidence 999999999999988897776544
No 77
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=9.9e-15 Score=132.17 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=107.8
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
...+..+.++.|+..|+.++..+..+.+ +||.++...+.++|++|+++|++||..|..||||||.|+..|+..
T Consensus 48 ~~~~d~~ev~~ll~~ga~~~~~n~DglT-------alhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 48 CSRGDLEEVRKLLNRGASPNLCNVDGLT-------ALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN 120 (527)
T ss_pred cccccHHHHHHHhccCCCccccCCccch-------hHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence 4567788889999999888777766665 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCC-----------------------------------------------------------CCCCCCC
Q 022927 240 IAFILMESGANMDC-----------------------------------------------------------KNAQGES 260 (290)
Q Consensus 240 iv~~Ll~~Ga~in~-----------------------------------------------------------~d~~G~T 260 (290)
++++|+.+||++.. .+..|-|
T Consensus 121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T 200 (527)
T KOG0505|consen 121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT 200 (527)
T ss_pred HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence 99999998876432 3345789
Q ss_pred hhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 261 PLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 261 pL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
+||+|+..|+.++.++|+++|.++++.|
T Consensus 201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D 228 (527)
T KOG0505|consen 201 ALHVAAANGYTEVAALLLQAGYSVNIKD 228 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999999886
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.52 E-value=1.1e-13 Score=116.14 Aligned_cols=106 Identities=27% Similarity=0.353 Sum_probs=51.4
Q ss_pred cccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC-----HHHHHHHHHCCC---CCcccccCCCcHHHHHHHcCCHH
Q 022927 168 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD-----AAAVKKLLSEGV---DANFCDKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 168 ~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~-----~~~v~~Ll~~g~---~vn~~d~~g~TpLh~A~~~g~~~ 239 (290)
+.+++..|.+++..+..+.+ +||+|+..++ .+++++||+.|+ +.+.+|..|+||||+|+..|+.+
T Consensus 89 ~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~ 161 (235)
T COG0666 89 VKLLLASGADVNAKDADGDT-------PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD 161 (235)
T ss_pred HHHHHHcCCCcccccCCCCc-------HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchH
Confidence 34444444444444433333 4555555555 455555555554 23333445555555555555555
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 280 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 280 (290)
++++|++.|++++..+..|.|+|++|+..++.+++.+|++.
T Consensus 162 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred HHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence 55555555555555555555555555555555555555444
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.51 E-value=6e-14 Score=117.63 Aligned_cols=95 Identities=32% Similarity=0.423 Sum_probs=90.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCCCChhhhh
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-----TDIAFILMESGA---NMDCKNAQGESPLDCA 265 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~Ga---~in~~d~~G~TpL~~A 265 (290)
+++|+++..+..+++++|+..|++++.+|..|.||||+|+..++ .+++++|++.|+ ..+.+|..|+||||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A 154 (235)
T COG0666 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWA 154 (235)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHH
Confidence 38999999999999999999999999999999999999999999 999999999999 6666799999999999
Q ss_pred hccCCHHHHHHHHhCCCCCCCCC
Q 022927 266 PVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 266 ~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
+..|+.+++++|++.|++++..+
T Consensus 155 ~~~~~~~~~~~ll~~~~~~~~~~ 177 (235)
T COG0666 155 ALNGDADIVELLLEAGADPNSRN 177 (235)
T ss_pred HHcCchHHHHHHHhcCCCCcccc
Confidence 99999999999999999998764
No 80
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.51 E-value=4.2e-14 Score=92.50 Aligned_cols=54 Identities=35% Similarity=0.407 Sum_probs=45.9
Q ss_pred cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHH
Q 022927 192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 245 (290)
Q Consensus 192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll 245 (290)
|.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 457999999999999999999999999999999999999999999999999996
No 81
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.50 E-value=1.5e-13 Score=104.50 Aligned_cols=111 Identities=28% Similarity=0.383 Sum_probs=99.8
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927 161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 240 (290)
Q Consensus 161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i 240 (290)
..+..+.++.|+..+...+..+..+. ++||.|+..++.+++++|++.|++++..+..|.||+|+|+..++.++
T Consensus 16 ~~~~~~~i~~li~~~~~~~~~~~~g~-------~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 88 (126)
T cd00204 16 SNGHLEVVKLLLENGADVNAKDNDGR-------TPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88 (126)
T ss_pred HcCcHHHHHHHHHcCCCCCccCCCCC-------cHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHH
Confidence 34556788889999888755555444 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHH
Q 022927 241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 278 (290)
Q Consensus 241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll 278 (290)
+++|+.+|.+++..+..|.|||++|...++.+++++|+
T Consensus 89 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 89 VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999999999999999999999999999985
No 82
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.48 E-value=8.8e-14 Score=137.82 Aligned_cols=127 Identities=24% Similarity=0.224 Sum_probs=96.0
Q ss_pred cccCCCCCCCcccccccCC--CCCCCCCCCCCCccccccchHHH-HHHHcCCHHHHHHHHHCCCC---------------
Q 022927 156 TARSRGSTSNSNFSSIFNP--GQVTNGATDKPRMEYEVNGEGLR-DAIKNGDAAAVKKLLSEGVD--------------- 217 (290)
Q Consensus 156 ~~~~~~s~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~t~Lh-~A~~~g~~~~v~~Ll~~g~~--------------- 217 (290)
.......++...++.+++. +.+++..+..+. |||| .|+..++.+++++|++.|+.
T Consensus 21 ~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~-------t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~ 93 (743)
T TIGR00870 21 FLPAAERGDLASVYRDLEEPKKLNINCPDRLGR-------SALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEY 93 (743)
T ss_pred HHHHHHcCCHHHHHHHhccccccCCCCcCccch-------hHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhcc
Confidence 3344566777777777777 666665555444 3777 66667777777777766620
Q ss_pred -----------------------Ccc----cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------C
Q 022927 218 -----------------------ANF----CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN--------------A 256 (290)
Q Consensus 218 -----------------------vn~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d--------------~ 256 (290)
++. .+..|.||||+|+..|+.+++++|+++||+++.++ .
T Consensus 94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~ 173 (743)
T TIGR00870 94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY 173 (743)
T ss_pred HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccc
Confidence 000 11358999999999999999999999999998753 3
Q ss_pred CCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 257 QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 257 ~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
.|.||||+|+..|+.+++++|+++|||+|.+|.
T Consensus 174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~ 206 (743)
T TIGR00870 174 HGESPLNAAACLGSPSIVALLSEDPADILTADS 206 (743)
T ss_pred ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence 589999999999999999999999999998764
No 83
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.47 E-value=5.8e-14 Score=131.61 Aligned_cols=113 Identities=22% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927 161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 240 (290)
Q Consensus 161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i 240 (290)
..+...++++|++..+..+..+..+.. |||+|++.|+.++++.||.++..+|.....|.||||.|+..|+.++
T Consensus 58 Lng~~~is~llle~ea~ldl~d~kg~~-------plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dv 130 (854)
T KOG0507|consen 58 LNGQNQISKLLLDYEALLDLCDTKGIL-------PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEV 130 (854)
T ss_pred hcCchHHHHHHhcchhhhhhhhccCcc-------eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHH
Confidence 344445555555555555554433333 5555555555555555555555555555555555555555555555
Q ss_pred HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927 241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 280 (290)
Q Consensus 241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 280 (290)
+.+||.+|+|.-++|..+.|+|.+|++.|..+++++|++.
T Consensus 131 v~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 131 VFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred HHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence 5555555555555555555555555555555555555544
No 84
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=114.80 Aligned_cols=83 Identities=25% Similarity=0.251 Sum_probs=43.3
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCccc-ccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM 273 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i 273 (290)
+|..|+..|+.+++++||+.|+|+|.. +..+.||||+|+..|+.++.++|++.|+.....|.-|+|+-.+|+.-|+.++
T Consensus 48 ~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~C 127 (396)
T KOG1710|consen 48 VLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHEC 127 (396)
T ss_pred HHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHH
Confidence 455555555555555555555555432 2344555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 022927 274 RQKM 277 (290)
Q Consensus 274 v~~L 277 (290)
|..+
T Consensus 128 V~iI 131 (396)
T KOG1710|consen 128 VAII 131 (396)
T ss_pred HHHH
Confidence 5444
No 85
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.5e-13 Score=124.15 Aligned_cols=93 Identities=25% Similarity=0.210 Sum_probs=82.6
Q ss_pred ccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCChhhhh
Q 022927 187 MEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCA 265 (290)
Q Consensus 187 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A 265 (290)
.+.+.|.|+||-|+..||.+||+|||+.|++||..|.+||||||.|+..++..+++.|++.|+-|.+.. .++.||..-+
T Consensus 578 qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKC 657 (752)
T KOG0515|consen 578 QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKC 657 (752)
T ss_pred CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhc
Confidence 345667789999999999999999999999999999999999999999999999999999999987764 4688888765
Q ss_pred h--ccCCHHHHHHHHh
Q 022927 266 P--VTLQYKMRQKMEE 279 (290)
Q Consensus 266 ~--~~g~~~iv~~Ll~ 279 (290)
- +.|+.++.+||-.
T Consensus 658 ee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 658 EEMEEGYDQCSQYLYG 673 (752)
T ss_pred chhhhhHHHHHHHHHH
Confidence 3 5788999999854
No 86
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.44 E-value=9.6e-14 Score=130.16 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=93.8
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
.|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++.|+.+++++|+.++..+|+.+..|.||||.|+++|+
T Consensus 48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh 127 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH 127 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCC
Q 022927 271 YKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 271 ~~iv~~Ll~~GAdin~~~~ 289 (290)
.+++.+|+++|+|.-..|.
T Consensus 128 ~dvv~~Ll~~~adp~i~nn 146 (854)
T KOG0507|consen 128 LEVVFYLLKKNADPFIRNN 146 (854)
T ss_pred hHHHHHHHhcCCCccccCc
Confidence 9999999999999877653
No 87
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=2.5e-13 Score=128.63 Aligned_cols=100 Identities=26% Similarity=0.261 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHcCCHHHHHHHHHCCCCCccc---------c--------------cCCCcHHHHHHHcCCHHHHHHHH
Q 022927 189 YEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC---------D--------------KQGMSLLHLAALFNRTDIAFILM 245 (290)
Q Consensus 189 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~---------d--------------~~g~TpLh~A~~~g~~~iv~~Ll 245 (290)
+-.|.||||.|+.+.+.++|++||+.||||+++ | ..|..||-+||..++.+++++|+
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 346888999999999999999999999999864 1 14778999999999999999999
Q ss_pred HCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC--CCCCC
Q 022927 246 ESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN--VGSTT 288 (290)
Q Consensus 246 ~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd--in~~~ 288 (290)
++|||++++|..|+|.||+.+..-..+|-.++|++||+ ..++|
T Consensus 261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N 305 (782)
T KOG3676|consen 261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN 305 (782)
T ss_pred hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99999999999999999999999999999999999999 55554
No 88
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.42 E-value=2.5e-13 Score=134.56 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=84.3
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHCCCCCcccc--------------cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 022927 190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------KQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255 (290)
Q Consensus 190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d--------------~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d 255 (290)
..|.||||+|+..|+.++|++||++|++++.++ .+|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d 205 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence 457889999999999999999999999999753 368999999999999999999999999999999
Q ss_pred CCCCChhhhhhccC---------CHHHHHHHHhCCCCC
Q 022927 256 AQGESPLDCAPVTL---------QYKMRQKMEEDKNNV 284 (290)
Q Consensus 256 ~~G~TpL~~A~~~g---------~~~iv~~Ll~~GAdi 284 (290)
..|+||||+|+..+ ...+.+++++.+++.
T Consensus 206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~ 243 (743)
T TIGR00870 206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL 243 (743)
T ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999886 344667777777665
No 89
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.41 E-value=7.8e-14 Score=130.52 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=43.8
Q ss_pred ccccccCCCCCcc-----ccccccccccceecCCCCCCccccc-----CCCC---CCcccccccchhhh
Q 022927 6 LQNLRLISHIRSN-----LLQHHCRCCGRTLCHEHSSDQMTLP-----QFGI---HTNVRVCADCFNSS 61 (290)
Q Consensus 6 ~~~~~c~~~f~~~-----~rrhhCr~cg~v~C~~c~~~~~~~~-----~~~~---~~~~rvC~~C~~~~ 61 (290)
+.|+.|+++|+++ .||||||+||+|||+.||+++..++ ..+. ..+.|||+.||..+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~ 529 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEY 529 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHH
Confidence 4599999999865 6999999999999999999876432 2221 23568999999655
No 90
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.37 E-value=8.8e-13 Score=111.25 Aligned_cols=97 Identities=27% Similarity=0.258 Sum_probs=90.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCChhhhhhccCCHH
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTLQYK 272 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~-d~~G~TpL~~A~~~g~~~ 272 (290)
.+|..++..++.+.+..||..--++|.+|..|+++|..|+..|+.+++++||+.|+|+|.. +..++||||.|+..|+.+
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d 93 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD 93 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence 3899999999999999999876779999999999999999999999999999999999976 567999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCC
Q 022927 273 MRQKMEEDKNNVGSTTSV 290 (290)
Q Consensus 273 iv~~Ll~~GAdin~~~~~ 290 (290)
+.++|++.||.....|+|
T Consensus 94 vcrllldaGa~~~~vNsv 111 (396)
T KOG1710|consen 94 VCRLLLDAGARMYLVNSV 111 (396)
T ss_pred HHHHHHhccCccccccch
Confidence 999999999999888764
No 91
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-12 Score=123.68 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=104.9
Q ss_pred CCCCcccccccCCCCCCCCCCCC-------C-----Ccc----ccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC
Q 022927 162 STSNSNFSSIFNPGQVTNGATDK-------P-----RME----YEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG 225 (290)
Q Consensus 162 s~~~~~~~~Ll~~g~~~~~~~~~-------~-----~~~----~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g 225 (290)
..+.+.+++|+..|++++.+-.. . .+. .-.|..||-+|+..+..+++++|+++|+|+|.+|.+|
T Consensus 194 ~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~G 273 (782)
T KOG3676|consen 194 NRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNG 273 (782)
T ss_pred hccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCC
Confidence 44567889999999999754321 1 111 2347789999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927 226 MSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYKMRQKMEED 280 (290)
Q Consensus 226 ~TpLh~A~~~g~~~iv~~Ll~~Ga~--in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 280 (290)
+|.||..+..-..++.+++|++|++ ..++|++|-|||.+|+..|..+|.+.+++.
T Consensus 274 NTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 274 NTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999 999999999999999999999999999997
No 92
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.32 E-value=2.2e-12 Score=84.88 Aligned_cols=55 Identities=31% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccCCC-CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHH
Q 022927 171 IFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA 232 (290)
Q Consensus 171 Ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A 232 (290)
||+.| .+++..+..+.+ |||+|+..|+.+++++||+.|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T-------~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNT-------PLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS---------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCc-------HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45666 677777766665 99999999999999999999999999999999999997
No 93
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.31 E-value=3.5e-12 Score=124.37 Aligned_cols=102 Identities=25% Similarity=0.250 Sum_probs=91.6
Q ss_pred cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927 158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 237 (290)
Q Consensus 158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~ 237 (290)
..+..++...++.|+..|++++..+..+.+ |||+|+..|+.+++++||++|+++|.+|..|+||||+|+..|+
T Consensus 88 ~aa~~G~~~~vk~LL~~Gadin~~d~~G~T-------pLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 88 QLAASGDAVGARILLTGGADPNCRDYDGRT-------PLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence 345677888899999999999887766554 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHC-------CCCCCCCCCCCCChhhhhh
Q 022927 238 TDIAFILMES-------GANMDCKNAQGESPLDCAP 266 (290)
Q Consensus 238 ~~iv~~Ll~~-------Ga~in~~d~~G~TpL~~A~ 266 (290)
.+++++|+++ |++++..+..|.+|+..+.
T Consensus 161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999999 9999999988888877554
No 94
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-10 Score=104.15 Aligned_cols=86 Identities=27% Similarity=0.385 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM 273 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i 273 (290)
.||..++.|+.++.-.||..|+++|..+ ..|.||||.|+..|+.--+++|+-+|||+++.|..|.||+.+|-..||-++
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 5999999999999999999999999988 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 022927 274 RQKMEED 280 (290)
Q Consensus 274 v~~Ll~~ 280 (290)
.+.|++.
T Consensus 216 aeRl~e~ 222 (669)
T KOG0818|consen 216 AERLVEI 222 (669)
T ss_pred HHHHHHH
Confidence 8888763
No 95
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.14 E-value=2.2e-11 Score=118.25 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=107.6
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccc-ccCCCcHHHHHHHcCCHH
Q 022927 161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTD 239 (290)
Q Consensus 161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~-d~~g~TpLh~A~~~g~~~ 239 (290)
..+..+.+++|+..|+++..++..+.. ||++|+-.||..+|+.||.+.++++.. |+.+.|+|-+|+..|+.+
T Consensus 766 aggh~e~vellv~rganiehrdkkgf~-------plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~ 838 (2131)
T KOG4369|consen 766 AGGHREEVELLVVRGANIEHRDKKGFV-------PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTR 838 (2131)
T ss_pred cCccHHHHHHHHHhcccccccccccch-------hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcch
Confidence 344567789999999999888887776 899999999999999999999998875 578999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
++++||..|++-..++-..+|||.+|...|+.+||.+||.+|+.||.+.
T Consensus 839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt 887 (2131)
T KOG4369|consen 839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT 887 (2131)
T ss_pred HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence 9999999999999999999999999999999999999999999988764
No 96
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=99.09 E-value=4.5e-11 Score=116.26 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=47.2
Q ss_pred cccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccc
Q 022927 3 HHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADC 57 (290)
Q Consensus 3 ~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C 57 (290)
..+++||.|..+|++++||||||+||+|||+.|++.++.+.... ...-|||..|
T Consensus 555 se~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~-e~~~rv~nV~ 608 (1287)
T KOG1841|consen 555 SEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS-ESEGRVSNVD 608 (1287)
T ss_pred ccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC-cccccccccc
Confidence 35789999999999999999999999999999999999887664 5666777766
No 97
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.08 E-value=5.5e-11 Score=115.63 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=101.7
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT 238 (290)
Q Consensus 160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~ 238 (290)
++.+...++..||..|..++.+.- ...|..||+.|..+|+.+.++.||+.|.|+|..- .+.+|+|-+|+..|+.
T Consensus 865 ~Sggy~~iI~~llS~GseInSrtg-----SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~ 939 (2131)
T KOG4369|consen 865 RSGGYTKIIHALLSSGSEINSRTG-----SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP 939 (2131)
T ss_pred cCcchHHHHHHHhhcccccccccc-----cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence 344455666677777766655432 2234558999999999999999999999998765 4678999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927 239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 287 (290)
Q Consensus 239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~ 287 (290)
+++.+||.+.+++..+-..|.|||+-++..|+.++-++||.+|||+|+.
T Consensus 940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas 988 (2131)
T KOG4369|consen 940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS 988 (2131)
T ss_pred hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence 9999999999999999999999999999999999999999999999874
No 98
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=99.07 E-value=1.4e-10 Score=103.90 Aligned_cols=89 Identities=26% Similarity=0.332 Sum_probs=84.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHH
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYK 272 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~ 272 (290)
..+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+++++++||+. +.+++.+|..|+|||.-|...+|.+
T Consensus 508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~ 587 (622)
T KOG0506|consen 508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE 587 (622)
T ss_pred hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence 369999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 022927 273 MRQKMEEDKN 282 (290)
Q Consensus 273 iv~~Ll~~GA 282 (290)
++++|.++-.
T Consensus 588 v~k~L~~~~~ 597 (622)
T KOG0506|consen 588 VVKLLEEAQY 597 (622)
T ss_pred HHHHHHHHhc
Confidence 9999987643
No 99
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.05 E-value=2.7e-10 Score=104.11 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=81.8
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCC--CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVD--ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY 271 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~--vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~ 271 (290)
+.||+|++.|+-++|++||++|.. ++..|..|.|+||-|+..++..+.++|++.||.+...|..|.||-..|.+.|+.
T Consensus 901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~ 980 (1004)
T KOG0782|consen 901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDP 980 (1004)
T ss_pred hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCc
Confidence 379999999999999999999865 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 022927 272 KMRQKMEED 280 (290)
Q Consensus 272 ~iv~~Ll~~ 280 (290)
+++.||..+
T Consensus 981 dlaayle~r 989 (1004)
T KOG0782|consen 981 DLAAYLESR 989 (1004)
T ss_pred hHHHHHhhh
Confidence 999999764
No 100
>PF13606 Ank_3: Ankyrin repeat
Probab=99.04 E-value=2e-10 Score=65.17 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927 258 GESPLDCAPVTLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin 285 (290)
|+||||+|+..|+.+++++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5555555555555555555555555554
No 101
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=8.7e-10 Score=100.94 Aligned_cols=90 Identities=22% Similarity=0.198 Sum_probs=80.9
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCC--Cc--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVD--AN--FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~--vn--~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
.|..|+...++..+-+||.+|.. +| ..+.+|+|+||+|+..|+..+.++|+-+|+|+-++|..|+|+|.||-+.|.
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 47888888999999999999854 33 235678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCC
Q 022927 271 YKMRQKMEEDKNNV 284 (290)
Q Consensus 271 ~~iv~~Ll~~GAdi 284 (290)
.+++.+||++|.--
T Consensus 707 qec~d~llq~gcp~ 720 (749)
T KOG0705|consen 707 QECIDVLLQYGCPD 720 (749)
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999999743
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.98 E-value=2.5e-10 Score=108.29 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=71.3
Q ss_pred cchHHHHHHHcCCHHHHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc
Q 022927 192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 267 (290)
Q Consensus 192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~ 267 (290)
|+++||.|+..+..+++++||++|+|++.+|. .|+||||-|+.+|+++++-+||.+|+.+.++|.+|..||+...+
T Consensus 52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence 44489999999999999999999999999995 79999999999999999999999999999999999999997765
No 103
>PF13606 Ank_3: Ankyrin repeat
Probab=98.98 E-value=7.8e-10 Score=62.70 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 022927 224 QGMSLLHLAALFNRTDIAFILMESGANMDC 253 (290)
Q Consensus 224 ~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~ 253 (290)
+|+||||+|+..|+.+++++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 478888888888888888888888888873
No 104
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.96 E-value=6.5e-10 Score=64.69 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=15.7
Q ss_pred CCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927 258 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTT 288 (290)
Q Consensus 258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~ 288 (290)
|+||||+|+..|+.+++++|+++||+++++|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 4455555555555555555555555555444
No 105
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=98.47 Aligned_cols=86 Identities=27% Similarity=0.302 Sum_probs=76.1
Q ss_pred HHHHHHHcCCHHHHHHHH--HCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHH
Q 022927 195 GLRDAIKNGDAAAVKKLL--SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK 272 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll--~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~ 272 (290)
+||+++...+.+-...++ +.+..++..|..|.||||+|+..|+...+++|+.+||++.++|.+||+|||.|+..|+.+
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q 102 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ 102 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence 599999998887555433 335678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 022927 273 MRQKMEED 280 (290)
Q Consensus 273 iv~~Ll~~ 280 (290)
++..+|.+
T Consensus 103 ~i~~vlr~ 110 (560)
T KOG0522|consen 103 IITEVLRH 110 (560)
T ss_pred HHHHHHHH
Confidence 98887764
No 106
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.92 E-value=2e-09 Score=62.59 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 022927 224 QGMSLLHLAALFNRTDIAFILMESGANMDCKNA 256 (290)
Q Consensus 224 ~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~ 256 (290)
+|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 478888888888888888888888888887763
No 107
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.92 E-value=2.5e-10 Score=98.66 Aligned_cols=72 Identities=28% Similarity=0.573 Sum_probs=64.3
Q ss_pred cccccCCCCCcc-----------ccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCCCCCccCCC
Q 022927 7 QNLRLISHIRSN-----------LLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDG 75 (290)
Q Consensus 7 ~~~~c~~~f~~~-----------~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~~~~~~~~~ 75 (290)
.|..|+.+|-+. .|.||||.||..||+.|++++...|.+|+...+|+|+.||..+....+.+++...+.
T Consensus 284 ~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei 363 (404)
T KOG1409|consen 284 SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI 363 (404)
T ss_pred hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc
Confidence 377888888543 379999999999999999999999999999999999999999998888888888888
Q ss_pred CCC
Q 022927 76 VNS 78 (290)
Q Consensus 76 ~~~ 78 (290)
..+
T Consensus 364 ~tg 366 (404)
T KOG1409|consen 364 KTG 366 (404)
T ss_pred ccc
Confidence 777
No 108
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.89 E-value=1.1e-10 Score=103.78 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=44.5
Q ss_pred cccccccCCCCCccccccccccccceecCCCCCCcc------------------cccC----CCCCCcccccccchhhhc
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQM------------------TLPQ----FGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~------------------~~~~----~~~~~~~rvC~~C~~~~~ 62 (290)
.+-|-.|..+|++.+||||||.||.|+|.+|+..-. +..+ .....++|+|..|...+.
T Consensus 180 V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~hCl~~L~ 259 (505)
T KOG1842|consen 180 VQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCMHCLDNLF 259 (505)
T ss_pred ccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHHHHHHHHH
Confidence 345888999999999999999999999999986432 0000 011356899999998775
Q ss_pred c
Q 022927 63 R 63 (290)
Q Consensus 63 ~ 63 (290)
.
T Consensus 260 ~ 260 (505)
T KOG1842|consen 260 R 260 (505)
T ss_pred H
Confidence 3
No 109
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.87 E-value=5.9e-10 Score=105.87 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 218 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 218 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
.|++|.+|+|+||+|+..+..+++++||++|+|++.+|.. |+||||.|+..|+.+++-+||.+|+...+.|+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk 117 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK 117 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence 7889999999999999999999999999999999999974 99999999999999999999999998877765
No 110
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.72 E-value=5.2e-08 Score=85.53 Aligned_cols=83 Identities=28% Similarity=0.343 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR 274 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv 274 (290)
-|..|++.|+.+.|+.|++.|+++|..|.+...||.+|...||.+++++||++||-...-..+|.-.+.-|. +..|-
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL---nd~IR 115 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL---NDRIR 115 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh---hHHHH
Confidence 599999999999999999999999999999999999999999999999999999988776777877755443 34455
Q ss_pred HHHHhC
Q 022927 275 QKMEED 280 (290)
Q Consensus 275 ~~Ll~~ 280 (290)
++||.+
T Consensus 116 ~mllsy 121 (516)
T KOG0511|consen 116 RMLLSY 121 (516)
T ss_pred HHHHHH
Confidence 555543
No 111
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.64 E-value=2.2e-08 Score=98.13 Aligned_cols=93 Identities=29% Similarity=0.377 Sum_probs=84.3
Q ss_pred CccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927 186 RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265 (290)
Q Consensus 186 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A 265 (290)
......|.++||.|+..|...++++||++|+++|..|..|.||||.+...|+...+.+|+++||+.++.+.+|++||++|
T Consensus 650 ~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 650 PVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred chhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence 33444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHH
Q 022927 266 PVTLQYKMRQKME 278 (290)
Q Consensus 266 ~~~g~~~iv~~Ll 278 (290)
....+.+++-+|.
T Consensus 730 ~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 730 MEAANADIVLLLR 742 (785)
T ss_pred hhhccccHHHHHh
Confidence 8777777766654
No 112
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2.9e-08 Score=87.65 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=48.2
Q ss_pred cccccCCCCC-ccccccccccccceecCCCCCCcccccC-CCCCCcccccccchhhh
Q 022927 7 QNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQ-FGIHTNVRVCADCFNSS 61 (290)
Q Consensus 7 ~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~-~~~~~~~rvC~~C~~~~ 61 (290)
-||+|+.+|+ ++.||||||.|+.+||-.|+..+..+|. +....++|||+.|+..+
T Consensus 162 lfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 162 LFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL 218 (473)
T ss_pred ceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence 4899999999 8899999999999999999988766554 34478899999999888
No 113
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=75.82 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=39.1
Q ss_pred CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927 216 VDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 280 (290)
Q Consensus 216 ~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~G-a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 280 (290)
.++|.+|.+|||+|+.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|-+.|..+.+.+|.+.
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence 455566666666666666666666666666665 55666666666666666666666666655554
No 114
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.55 E-value=3.5e-07 Score=84.15 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=84.5
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCChhhhhhccCCHH
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYK 272 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~--in~~d~~G~TpL~~A~~~g~~~ 272 (290)
-|..|+..+++--++.+-.+|.++-.++.+..+.||+|+..|+-+||+|||++|-. ++..|..|.|+||-|+..++..
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~ 948 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA 948 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence 37888888888777777778999989999999999999999999999999999853 5778899999999999999999
Q ss_pred HHHHHHhCCCCCCCCCC
Q 022927 273 MRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 273 iv~~Ll~~GAdin~~~~ 289 (290)
+.++|+++||.+..+|.
T Consensus 949 vc~~lvdagasl~ktd~ 965 (1004)
T KOG0782|consen 949 VCQLLVDAGASLRKTDS 965 (1004)
T ss_pred HHHHHHhcchhheeccc
Confidence 99999999998876653
No 115
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-07 Score=87.38 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=68.9
Q ss_pred ccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022927 167 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246 (290)
Q Consensus 167 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~ 246 (290)
.+-+||.+|......+. .....|.|+||+|+..|++.+.++|+-+|+|+-.+|.+|+|+|.||-..|..+++..||.
T Consensus 639 t~~lLLAhg~~~e~~~t---~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq 715 (749)
T KOG0705|consen 639 TAILLLAHGSREEVNET---CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQ 715 (749)
T ss_pred HHHHHHhccCchhhhcc---ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHH
Confidence 34556677765543322 233467889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 022927 247 SGANMD 252 (290)
Q Consensus 247 ~Ga~in 252 (290)
+|..-+
T Consensus 716 ~gcp~e 721 (749)
T KOG0705|consen 716 YGCPDE 721 (749)
T ss_pred cCCCcc
Confidence 987543
No 116
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.31 E-value=1.2e-06 Score=79.47 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927 159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 238 (290)
Q Consensus 159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~ 238 (290)
...+++....=.||..|++.|..... .|.||||.|++.|...-+++|+-+|+|++..|..|+||+.||-..||.
T Consensus 140 svRt~nlet~LRll~lGA~~N~~hpe------kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 140 SVRTGNLETCLRLLSLGAQANFFHPE------KGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HhhcccHHHHHHHHHcccccCCCCcc------cCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence 34555555555678889998876643 345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 022927 239 DIAFILME 246 (290)
Q Consensus 239 ~iv~~Ll~ 246 (290)
++.+-|++
T Consensus 214 ~laeRl~e 221 (669)
T KOG0818|consen 214 ELAERLVE 221 (669)
T ss_pred HHHHHHHH
Confidence 88877765
No 117
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.30 E-value=2.4e-07 Score=83.57 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=76.8
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHH
Q 022927 156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAAL 234 (290)
Q Consensus 156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~ 234 (290)
....+..++...++.+.-.|.+.+..+-..++ +||.|+..|+++++++||+. +.+++.+|.+|+|||.-|..
T Consensus 510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RT-------aLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~ 582 (622)
T KOG0506|consen 510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRT-------ALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH 582 (622)
T ss_pred hhhhhhcCCHHHHHHHHHhcccccccccccch-------hheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence 33447788888888899999999888776665 89999999999999999986 89999999999999999999
Q ss_pred cCCHHHHHHHHHCCC
Q 022927 235 FNRTDIAFILMESGA 249 (290)
Q Consensus 235 ~g~~~iv~~Ll~~Ga 249 (290)
++|.+++++|-++-.
T Consensus 583 F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 583 FKHKEVVKLLEEAQY 597 (622)
T ss_pred cCcHHHHHHHHHHhc
Confidence 999999999987643
No 118
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.29 E-value=2.6e-07 Score=85.23 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=52.2
Q ss_pred ccccccCCCCC-ccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCC
Q 022927 6 LQNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 66 (290)
Q Consensus 6 ~~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~ 66 (290)
..|+.|+.+|+ ..+|||||+.||.|+|+.|+..+..+...+ ...-|||..||.....+..
T Consensus 416 ~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~-s~ssrv~~~~~~~~~~a~~ 476 (623)
T KOG4424|consen 416 TSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDN-SRSSRVCMDRYLTPSGAPG 476 (623)
T ss_pred ccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccc-cchhhhhhhhccCCCCCCC
Confidence 46999999998 899999999999999999999998876544 6889999999998865543
No 119
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.29 E-value=4.6e-07 Score=88.88 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=79.0
Q ss_pred cchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 192 NGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 192 ~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
+.+.||.++..+..-+++.+++. |......|.+|...+|+++..|..-.+.+.+-.|..++++|..||||||||+..|+
T Consensus 574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~ 653 (975)
T KOG0520|consen 574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR 653 (975)
T ss_pred chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH
Confidence 56679999999999999999986 76677778888888998555444434444456799999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC
Q 022927 271 YKMRQKMEEDKNNVGST 287 (290)
Q Consensus 271 ~~iv~~Ll~~GAdin~~ 287 (290)
..++..|++.|++.++.
T Consensus 654 e~l~a~l~~lga~~~~~ 670 (975)
T KOG0520|consen 654 EKLVASLIELGADPGAV 670 (975)
T ss_pred HHHHHHHHHhccccccc
Confidence 99999999999987654
No 120
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.25 E-value=1.5e-06 Score=76.59 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=55.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927 226 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN 283 (290)
Q Consensus 226 ~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd 283 (290)
+--|..|++.|..+.+++|++.|.+||.+|.....||.+|...||.++|++||++||-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 4568889999999999999999999999999999999999999999999999999994
No 121
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.15 E-value=3.3e-06 Score=81.46 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=63.4
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCChh
Q 022927 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM----------DCKNAQGESPL 262 (290)
Q Consensus 193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i----------n~~d~~G~TpL 262 (290)
+++|+.|+.+.+.+++++|+++...+ ..+|.+|+..|..+++++|+.+-... ...-.-+.|||
T Consensus 63 r~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl 135 (822)
T KOG3609|consen 63 RLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL 135 (822)
T ss_pred hhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH
Confidence 33677777777777777777765444 34677777777777777777653222 11224578999
Q ss_pred hhhhccCCHHHHHHHHhCCCCCCC
Q 022927 263 DCAPVTLQYKMRQKMEEDKNNVGS 286 (290)
Q Consensus 263 ~~A~~~g~~~iv~~Ll~~GAdin~ 286 (290)
.+|+..+++||+++||++|+.+..
T Consensus 136 iLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 136 MLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHhcchHHHHHHHHcCCCCCC
Confidence 999999999999999999998864
No 122
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.10 E-value=6.6e-06 Score=75.45 Aligned_cols=67 Identities=25% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC
Q 022927 174 PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 247 (290)
Q Consensus 174 ~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ 247 (290)
.+..++..+..+. ||||.|+..|+.+.++.|+.+|+++..++..||++||-|+..|+.+++..+|.+
T Consensus 44 ~~~~id~~D~~g~-------TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 44 VSLVIDRRDPPGR-------TPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhceeccccCCCC-------ccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555554 499999999999999999999999999999999999999999999988777654
No 123
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.10 E-value=2.4e-06 Score=84.01 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=68.5
Q ss_pred HCCCCCcccc--cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927 213 SEGVDANFCD--KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289 (290)
Q Consensus 213 ~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~ 289 (290)
..++++|..+ ..|.|+||.|+..+..-+.++|+++|+++|.+|..|+||||.+...|+...+.+|+++||+.++.++
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~ 720 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP 720 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence 3455555432 4679999999999999999999999999999999999999999999999999999999999998764
No 124
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=98.06 E-value=3.6e-07 Score=84.86 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=49.5
Q ss_pred ccc-cCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 8 NLR-LISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 8 ~~~-c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
||. |+..|..|+||||||.||...|..|..++......|...+.++|+.|+.+..
T Consensus 329 ~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsi 384 (1141)
T KOG1811|consen 329 CMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSI 384 (1141)
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhh
Confidence 454 6889999999999999999999999999988888898999999999997653
No 125
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.03 E-value=6.1e-06 Score=83.72 Aligned_cols=53 Identities=28% Similarity=0.560 Sum_probs=43.8
Q ss_pred CCcccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927 1 MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 64 (290)
Q Consensus 1 ~~~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 64 (290)
|+.-|..|..|+ |.++||||||.||++||++|... . .+.+|||..|+......
T Consensus 1 ~~~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~-------~-~~~i~~~~~~~~~~~~~ 53 (1598)
T KOG0230|consen 1 MPQSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS-------P-ETSIRVCNECRGQWEQG 53 (1598)
T ss_pred CCccccchhccc---cccccCCCCcccCceeccccCCC-------C-ccceeehhhhhhhcccc
Confidence 556677889999 99999999999999999999822 2 34899999999887533
No 126
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.93 E-value=4.8e-05 Score=61.20 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCC-CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927 176 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 251 (290)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i 251 (290)
.++|..|..+ ||+|+.|+..|..+.+.+|+.+| +++...|..|.+++.+|-..|..+++..|.++-.+-
T Consensus 3 ~~in~rD~fg-------WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 3 GNINARDAFG-------WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCccchhhhc-------chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 4455555554 45999999999999999999999 899999999999999999999999999999874433
No 127
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.75 E-value=1.4e-05 Score=78.64 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHH-HCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCChhhhhhc
Q 022927 195 GLRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC------KNAQGESPLDCAPV 267 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll-~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~------~d~~G~TpL~~A~~ 267 (290)
.+|. |..++++.+-+|+ -.|..++.+|..||||||||+.+|+..++..|++.|++..+ .+-.|.|+-.+|..
T Consensus 611 V~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s 689 (975)
T KOG0520|consen 611 VIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA 689 (975)
T ss_pred hhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence 5677 5556666555444 56899999999999999999999999999999988776543 34569999999999
Q ss_pred cCCHHHHHHHHhC
Q 022927 268 TLQYKMRQKMEED 280 (290)
Q Consensus 268 ~g~~~iv~~Ll~~ 280 (290)
.|+..+..+|-+.
T Consensus 690 ~g~~gia~~lse~ 702 (975)
T KOG0520|consen 690 NGHKGIAGYLSEK 702 (975)
T ss_pred ccccchHHHHhhh
Confidence 9999988887653
No 128
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.51 E-value=0.00023 Score=65.13 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=54.8
Q ss_pred HHHHHHHHHCCCCCccc------ccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhh
Q 022927 205 AAAVKKLLSEGVDANFC------DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP 266 (290)
Q Consensus 205 ~~~v~~Ll~~g~~vn~~------d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~ 266 (290)
...+++|.+++++.|.. +..--|+||+|+.+|...++.+||+.|+|+.++|..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 56788999998887653 344679999999999999999999999999999999999999987
No 129
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.46 E-value=0.00018 Score=38.79 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=13.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927 225 GMSLLHLAALFNRTDIAFILMESGANM 251 (290)
Q Consensus 225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~i 251 (290)
|.|+||+|+..++.+++++|+++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 344555555555555555555444433
No 130
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.37 E-value=0.0004 Score=37.30 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=20.0
Q ss_pred CCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927 258 GESPLDCAPVTLQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin 285 (290)
|.||||+|+..++.+++++|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5677777777777777777777776654
No 131
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.19 E-value=0.00017 Score=73.63 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=27.8
Q ss_pred cccccccCCCCCccccccccccccceecCCC
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEH 35 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c 35 (290)
.++|+.|..+|..|+|+||| ||+|||.+|
T Consensus 97 ~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 97 SKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred cchhhhhccchhhhhccccc--CccccCCcc
Confidence 47899999999999999999 999999999
No 132
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.00057 Score=66.40 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHHcCCHHHHHHHHHCC----CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927 195 GLRDAIKNGDAAAVKKLLSEG----VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ 270 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g----~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~ 270 (290)
....|+..|+...|+..++.. .++|..|.-|+++|++|+.+.+.+++++|++++..+ ..+|.+|+..|.
T Consensus 28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~ 100 (822)
T KOG3609|consen 28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS 100 (822)
T ss_pred HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence 588999999999999998752 678999999999999999999999999999997766 348999999999
Q ss_pred HHHHHHHHhCCCC
Q 022927 271 YKMRQKMEEDKNN 283 (290)
Q Consensus 271 ~~iv~~Ll~~GAd 283 (290)
.++|++|+.+-..
T Consensus 101 v~~VE~ll~~~~~ 113 (822)
T KOG3609|consen 101 VPLVELLLVHFVD 113 (822)
T ss_pred HHHHHHHHhcccc
Confidence 9999999997543
No 133
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=96.80 E-value=0.00053 Score=52.06 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=39.4
Q ss_pred cccccccCCCCCcc-ccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 5 DLQNLRLISHIRSN-LLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 5 ~~~~~~c~~~f~~~-~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
...|..|+.+|+++ ++.+-|..|+.-||..|... ....+.-+|..|+...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHH
Confidence 45789999999955 68999999999999999765 2246788999999754
No 134
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.40 E-value=0.0035 Score=57.63 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=54.2
Q ss_pred cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHH
Q 022927 166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 245 (290)
Q Consensus 166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll 245 (290)
..+++|.+.+...|..-... ..+...-|+||+|+..|..++|.+||+.|+|+-.+|..|.||..++. +.++-..++
T Consensus 405 ~~ie~lken~lsgnf~~~pe-~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPE-ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred hHHHHHHhcCCccccccccc-ccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence 44455556665554433222 12223457999999999999999999999999999999999999986 444444333
No 135
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=96.38 E-value=0.011 Score=49.16 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=64.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCccccc----CCCcHHHHHHH--cCCHHHHHHHHHCC-CCCCCC---CCCCCChhh
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDK----QGMSLLHLAAL--FNRTDIAFILMESG-ANMDCK---NAQGESPLD 263 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~----~g~TpLh~A~~--~g~~~iv~~Ll~~G-a~in~~---d~~G~TpL~ 263 (290)
++|.+|+.++..+++.+||.+- .....|. .+.--+-|+.. ..+..+++++|.+| +++|.+ -+.|.|-|.
T Consensus 181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD 259 (284)
T PF06128_consen 181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD 259 (284)
T ss_pred HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence 3678888888888888888641 2222221 12223333332 34567899999998 677754 567999999
Q ss_pred hhhccCCHHHHHHHHhCCCCC
Q 022927 264 CAPVTLQYKMRQKMEEDKNNV 284 (290)
Q Consensus 264 ~A~~~g~~~iv~~Ll~~GAdi 284 (290)
-|...++.+|+.+||++||-.
T Consensus 260 NA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 260 NAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred hHHhcCcHHHHHHHHHcCccc
Confidence 999999999999999999943
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=95.00 E-value=0.0034 Score=39.70 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=19.5
Q ss_pred cccccCCCCCcc------ccccccccccceecCCC
Q 022927 7 QNLRLISHIRSN------LLQHHCRCCGRTLCHEH 35 (290)
Q Consensus 7 ~~~~c~~~f~~~------~rrhhCr~cg~v~C~~c 35 (290)
.|++|+++|... ..|+.|..|+++||..|
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 489999999976 36899999999999988
No 137
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=92.50 E-value=0.032 Score=48.77 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=41.6
Q ss_pred cccccccCCCCCccccccccccccceecCCCCC-CcccccCC-----CCCCcccccccchhh
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSS-DQMTLPQF-----GIHTNVRVCADCFNS 60 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~-~~~~~~~~-----~~~~~~rvC~~C~~~ 60 (290)
.-.|+.|...|.++.|+||||.||+|||..|.. +....+.. -.....+.|..|+..
T Consensus 20 ~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 20 ANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred chhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 345788899999999999999999999999998 22222211 124566788888765
No 138
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=92.31 E-value=0.27 Score=33.95 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES 247 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ 247 (290)
-|..|+..|+.++++.+++.+ .++ ...+..|+...+.+++++|++.
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 589999999999999999765 222 3578999999999999999986
No 139
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=90.83 E-value=0.28 Score=33.86 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927 227 SLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED 280 (290)
Q Consensus 227 TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 280 (290)
.-|.+|+..|+.+|++.+++.+ .++ ...|..|+..-+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4678999999999999999765 222 4579999999999999999875
No 140
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.35 E-value=0.2 Score=37.27 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=25.4
Q ss_pred cccccCCCCCcc----------ccccccccccceecCCCC
Q 022927 7 QNLRLISHIRSN----------LLQHHCRCCGRTLCHEHS 36 (290)
Q Consensus 7 ~~~~c~~~f~~~----------~rrhhCr~cg~v~C~~c~ 36 (290)
.|++|+.+|.-. .-|..|..|.++||.+|=
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 499999999743 347889999999999994
No 141
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=90.27 E-value=0.61 Score=39.15 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHCC-CCCccc---ccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927 203 GDAAAVKKLLSEG-VDANFC---DKQGMSLLHLAALFNRTDIAFILMESGANM 251 (290)
Q Consensus 203 g~~~~v~~Ll~~g-~~vn~~---d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i 251 (290)
.+..+++.+|.+| +++|.. -..|.|-|--|+.+++.+++.+||++||-.
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 4667889999988 567653 467999999999999999999999999944
No 142
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=89.90 E-value=0.46 Score=48.29 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=36.7
Q ss_pred ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
..|+.|.+.|++++|||||| |.+| +-+.+ .+..|+|..|+..+..
T Consensus 658 Png~la~t~~~~~~e~~hsr--~~ls----------~~~~s-~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 658 PNGELAETRFTFTGERHHSR--GKLS----------LLYSS-RKEARPCNITHSVLRN 702 (1287)
T ss_pred CCceecccceeeeccccccc--cccc----------ccccc-cccCCCCcccCccchh
Confidence 45899999999999999999 8887 22333 6788999999987765
No 143
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=86.12 E-value=0.51 Score=28.08 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=18.8
Q ss_pred ccccCCCCCccccccccccccceecCCC
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEH 35 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c 35 (290)
|..|++.-.++ ...|+.||.+||...
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccccc--CeECCccCCcccccc
Confidence 34566655554 678999999999865
No 144
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=85.91 E-value=1.7 Score=35.38 Aligned_cols=79 Identities=18% Similarity=0.027 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHHHH----HHHHHCCCCCccccc--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhcc
Q 022927 195 GLRDAIKNGDAAAV----KKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT 268 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v----~~Ll~~g~~vn~~d~--~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~ 268 (290)
-+-.|....++++. ++++++...-...|. --..-|.+|+..|-...+.-.|++|.+++. ++|..|+..
T Consensus 107 iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y 180 (192)
T PF03158_consen 107 IFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY 180 (192)
T ss_pred hhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence 36677777777643 344555333211111 112456789999999998888899988873 789999999
Q ss_pred CCHHHHHHHHh
Q 022927 269 LQYKMRQKMEE 279 (290)
Q Consensus 269 g~~~iv~~Ll~ 279 (290)
++..|+.+++.
T Consensus 181 nhRkIL~yfi~ 191 (192)
T PF03158_consen 181 NHRKILDYFIR 191 (192)
T ss_pred hHHHHHHHhhc
Confidence 99999988874
No 145
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=85.50 E-value=0.45 Score=37.71 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=9.6
Q ss_pred cccccccccccccee
Q 022927 17 SNLLQHHCRCCGRTL 31 (290)
Q Consensus 17 ~~~rrhhCr~cg~v~ 31 (290)
..+|+++|.+||+-|
T Consensus 24 ~~~~~~~c~~c~~~f 38 (154)
T PRK00464 24 AIRRRRECLACGKRF 38 (154)
T ss_pred ceeeeeeccccCCcc
Confidence 355667777777544
No 146
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=84.60 E-value=0.3 Score=30.19 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred CcccccccccCCCCCccccccccccccce-ecCCC
Q 022927 2 THHDLQNLRLISHIRSNLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 2 ~~~~~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c 35 (290)
+|+...|-+|+.. .+...|+||..|... +|..|
T Consensus 1 ~h~~~~C~~C~~~-~i~g~Ry~C~~C~d~dLC~~C 34 (46)
T PF00569_consen 1 IHHGYTCDGCGTD-PIIGVRYHCLVCPDYDLCEDC 34 (46)
T ss_dssp -CSSCE-SSS-SS-SEESSEEEESSSSS-EEEHHH
T ss_pred CCCCeECcCCCCC-cCcCCeEECCCCCCCchhhHH
Confidence 5788889999985 455678999988532 44433
No 147
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=84.09 E-value=0.52 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.2
Q ss_pred cccccccccCCCCCccccccccccccce-ecCCC
Q 022927 3 HHDLQNLRLISHIRSNLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 3 ~~~~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c 35 (290)
|+...|..|+. .+...|+||..|... +|..|
T Consensus 2 ~~~~~C~~C~~--~i~g~ry~C~~C~d~dlC~~C 33 (44)
T smart00291 2 HHSYSCDTCGK--PIVGVRYHCLVCPDYDLCQSC 33 (44)
T ss_pred CCCcCCCCCCC--CCcCCEEECCCCCCccchHHH
Confidence 56778999998 456778899988433 55555
No 148
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.96 E-value=0.06 Score=48.48 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=49.3
Q ss_pred ccccccCCCCCcccccccccc--ccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCC
Q 022927 6 LQNLRLISHIRSNLLQHHCRC--CGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD 67 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~--cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~ 67 (290)
.+|-.|...|.-++-.-||-. |++|||-.|+.-. +|..-...+..||+-|+....+....
T Consensus 469 e~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Kat--vp~l~~e~~akv~rlq~eL~~seq~~ 530 (542)
T KOG0993|consen 469 EQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKAT--VPSLPNERPAKVCRLQHELLNSEQKP 530 (542)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhh--cccccccchHHHHHHHHHHhhhccCC
Confidence 368889999999998888887 9999999998654 46655578999999999988765544
No 149
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.42 E-value=0.76 Score=34.15 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=16.9
Q ss_pred cccccCCCCCccc-cccccccccceecC
Q 022927 7 QNLRLISHIRSNL-LQHHCRCCGRTLCH 33 (290)
Q Consensus 7 ~~~~c~~~f~~~~-rrhhCr~cg~v~C~ 33 (290)
.|..|+++|==++ +--+|-.||.+|=.
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFPP 38 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccCc
Confidence 4788988887444 44446666655433
No 150
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.21 E-value=0.95 Score=34.31 Aligned_cols=24 Identities=13% Similarity=-0.136 Sum_probs=14.8
Q ss_pred cccccCCCCC-ccccccccccccce
Q 022927 7 QNLRLISHIR-SNLLQHHCRCCGRT 30 (290)
Q Consensus 7 ~~~~c~~~f~-~~~rrhhCr~cg~v 30 (290)
.|..|+++|- |.++--+|-.||.+
T Consensus 11 ~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 11 ICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cCCCcCccccccCCCCccCCCcCCc
Confidence 4778888886 44445555555544
No 151
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=0.31 Score=42.16 Aligned_cols=47 Identities=15% Similarity=0.388 Sum_probs=39.3
Q ss_pred ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
.+|..|+..|.-+.|||-|--|-+-||..|| ++ ....|.|..|+-.-
T Consensus 45 p~ckacg~~f~~~~~k~~c~dckk~fc~tcs--~v-------~~~lr~c~~c~r~~ 91 (350)
T KOG4275|consen 45 PHCKACGEEFEDAQSKSDCEDCKKEFCATCS--RV-------SISLRTCTSCRRVN 91 (350)
T ss_pred chhhhhchhHhhhhhhhhhhhhhHHHHHHHH--Hh-------cccchhhhHHHHHH
Confidence 3678999999999999999999999999998 22 25678899887543
No 152
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=78.59 E-value=3 Score=33.95 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=51.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH----HHHHHCCCCCCCCCC--CCCChhhhhhcc
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA----FILMESGANMDCKNA--QGESPLDCAPVT 268 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv----~~Ll~~Ga~in~~d~--~G~TpL~~A~~~ 268 (290)
.+-.||+..+.++|+++-+. +.. .+-.+-+-.|....+.++. .+++++...-.-.|. --.--|.+|+..
T Consensus 79 LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~k 153 (192)
T PF03158_consen 79 LFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAK 153 (192)
T ss_pred HHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHC
Confidence 46678888888888888432 111 1223445567777666542 234444322210110 011235688889
Q ss_pred CCHHHHHHHHhCCCCCC
Q 022927 269 LQYKMRQKMEEDKNNVG 285 (290)
Q Consensus 269 g~~~iv~~Ll~~GAdin 285 (290)
|....+.-.|++|-+++
T Consensus 154 gll~F~letlkygg~~~ 170 (192)
T PF03158_consen 154 GLLPFVLETLKYGGNVD 170 (192)
T ss_pred CCHHHHHHHHHcCCccc
Confidence 99998888889988887
No 153
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=0.72 Score=43.08 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=41.0
Q ss_pred cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
..+|-.|=.++.+-.|-- ||.|||..|.-+....+ ..+.-+-|..|+..+.-
T Consensus 186 ~~~CPICL~~~~~p~~t~----CGHiFC~~CiLqy~~~s---~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTN----CGHIFCGPCILQYWNYS---AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccc----cCceeeHHHHHHHHhhh---cccCCccCCchhhhccc
Confidence 568899999998877763 99999999987665544 34667889999998754
No 154
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=76.40 E-value=1.3 Score=30.03 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=31.7
Q ss_pred cccccCCCCCccccccccccccce-----ecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
.|-.|+.+-.+...+.||-.|+.- +|..|-..-..|.--| ----.|..|+..+++
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLiSK 62 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLISK 62 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE-T
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCceeec
Confidence 577899998898999999999875 6777765554444333 234467777776653
No 155
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.24 E-value=0.4 Score=38.52 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=31.8
Q ss_pred cccccCCCCCcccccc-ccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 7 QNLRLISHIRSNLLQH-HCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrh-hCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
.+++|.--.--+..+- ---+||.|||..|-.... +..++|..|..++..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al--------k~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL--------KNTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHH--------HhCCCCCCcccccch
Confidence 3444444333333333 557899999999975442 567889999887643
No 156
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=74.97 E-value=1.4 Score=35.53 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=21.1
Q ss_pred ccccCCCCCccccccccccccceecCCC
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEH 35 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c 35 (290)
|+.|.++-.+.. +||| ||.+||+..
T Consensus 108 C~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 108 CFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred hhhhhhhhcccc--cccc-cCCcccccc
Confidence 788888888887 8997 999999854
No 157
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=72.27 E-value=1.9 Score=27.76 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=15.5
Q ss_pred CCccccccc--cccccce-------ecCCCCCC
Q 022927 15 IRSNLLQHH--CRCCGRT-------LCHEHSSD 38 (290)
Q Consensus 15 f~~~~rrhh--Cr~cg~v-------~C~~c~~~ 38 (290)
|.-.+++-| ||.||+. +|..|.--
T Consensus 8 ~GKrnk~tH~~CRRCGr~syhv~k~~CaaCGfg 40 (61)
T COG2126 8 FGKRNKKTHIRCRRCGRRSYHVRKKYCAACGFG 40 (61)
T ss_pred ccccCCcceehhhhccchheeeccceecccCCC
Confidence 444445555 9999976 67777543
No 158
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=71.57 E-value=2.2 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=14.2
Q ss_pred cccccCCCCCccc-------ccccccccccee
Q 022927 7 QNLRLISHIRSNL-------LQHHCRCCGRTL 31 (290)
Q Consensus 7 ~~~~c~~~f~~~~-------rrhhCr~cg~v~ 31 (290)
.|-.|+..|.+-. |+--|.+||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 3566777776433 345566666554
No 159
>PHA02768 hypothetical protein; Provisional
Probab=71.47 E-value=2.6 Score=27.09 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=19.8
Q ss_pred CCcccccccccCCCCCccc------ccc----cccccccee
Q 022927 1 MTHHDLQNLRLISHIRSNL------LQH----HCRCCGRTL 31 (290)
Q Consensus 1 ~~~~~~~~~~c~~~f~~~~------rrh----hCr~cg~v~ 31 (290)
|+-..-+|-.|++.|+... |+| .|-.||++|
T Consensus 1 ~~~~~y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 1 MALLGYECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcccccCcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 5555667889999997432 334 366666654
No 160
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=70.22 E-value=3.3 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=18.8
Q ss_pred cCCCCCccccc----cccccccceecCCCCCC
Q 022927 11 LISHIRSNLLQ----HHCRCCGRTLCHEHSSD 38 (290)
Q Consensus 11 c~~~f~~~~rr----hhCr~cg~v~C~~c~~~ 38 (290)
|+..|..-... -.|..||..||..|...
T Consensus 26 C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 26 CEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp T---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred CcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 77777655543 56999999999999754
No 161
>COG1773 Rubredoxin [Energy production and conversion]
Probab=69.34 E-value=2.2 Score=27.35 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=22.2
Q ss_pred cccccccccceecCCCCCCcccccC---CCCCCcccccccch
Q 022927 20 LQHHCRCCGRTLCHEHSSDQMTLPQ---FGIHTNVRVCADCF 58 (290)
Q Consensus 20 rrhhCr~cg~v~C~~c~~~~~~~~~---~~~~~~~rvC~~C~ 58 (290)
+|+.|+.||.||=..=-.....++. +..-..-.+|..|-
T Consensus 2 ~~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w~CP~Cg 43 (55)
T COG1773 2 KRWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDWVCPECG 43 (55)
T ss_pred CceEecCCceEeccccCCccCCCCCCCchhhCCCccCCCCCC
Confidence 4799999999976543332222221 11123456787775
No 162
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=66.98 E-value=1.4 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=22.1
Q ss_pred ccccCCCCCccccccccccccceecCCCCCCcc
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~ 40 (290)
|-.|.+.| --.++-.=-.||.+||..|.....
T Consensus 2 C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 2 CNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc
Confidence 55677777 223445556899999999976654
No 163
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.86 E-value=2.6 Score=33.71 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.9
Q ss_pred CCCCccccccccccccce---ecCCCC
Q 022927 13 SHIRSNLLQHHCRCCGRT---LCHEHS 36 (290)
Q Consensus 13 ~~f~~~~rrhhCr~cg~v---~C~~c~ 36 (290)
..|.....||.|+.||.. ||..|.
T Consensus 7 s~~d~ieGRs~C~~C~~SRkFfCY~C~ 33 (230)
T KOG3795|consen 7 SSFDPIEGRSTCPGCKSSRKFFCYDCR 33 (230)
T ss_pred hccCcccccccCCCCCCcceEEEEeec
Confidence 356678899999999975 999996
No 164
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=63.99 E-value=2.8 Score=37.27 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=35.0
Q ss_pred CcccccccccCCCCCccccccccccccce-ecCCCCCCcccccCCC
Q 022927 2 THHDLQNLRLISHIRSNLLQHHCRCCGRT-LCHEHSSDQMTLPQFG 46 (290)
Q Consensus 2 ~~~~~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c~~~~~~~~~~~ 46 (290)
.|..+.|.+|.+. .|..||+.|-.|-.. +|..|-.+.+..+-..
T Consensus 5 rHe~v~CdgC~k~-~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~ 49 (381)
T KOG1280|consen 5 RHEGVSCDGCGKT-AFTFRRYKCLRCSDYDLCFSCYENGATTPIHD 49 (381)
T ss_pred CcCCceecccccc-ceeeeeeEeeeecchhHHHHHhhcCCCCcccC
Confidence 5889999999765 467788999999876 8999988776655443
No 165
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=63.72 E-value=4.3 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=14.7
Q ss_pred cccccCCCCCcccc--ccccccccc
Q 022927 7 QNLRLISHIRSNLL--QHHCRCCGR 29 (290)
Q Consensus 7 ~~~~c~~~f~~~~r--rhhCr~cg~ 29 (290)
.|-+|+..|.+..+ ..+|..||.
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCC
Confidence 36777777766555 356666664
No 166
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=63.50 E-value=1.1 Score=26.57 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=26.2
Q ss_pred ccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchh
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 59 (290)
|-.|...| .....-..||..||..|...+... ..+.|..|..
T Consensus 2 C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~-------~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF---REPVVLLPCGHVFCRSCIDKWLKS-------GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh---hCceEecCCCChhcHHHHHHHHHh-------CcCCCCCCCC
Confidence 45666665 444455669999999997765431 2344666643
No 167
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=63.47 E-value=3.4 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=14.0
Q ss_pred cccccCCCCCccc-------ccccccccccee
Q 022927 7 QNLRLISHIRSNL-------LQHHCRCCGRTL 31 (290)
Q Consensus 7 ~~~~c~~~f~~~~-------rrhhCr~cg~v~ 31 (290)
+|-.|+..|.+-. ++.-|-.||.+|
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 3566777775443 355555555554
No 168
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=62.04 E-value=3.4 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=20.2
Q ss_pred cccccCCCCCcccccccccccc---ceecCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCG---RTLCHEHSS 37 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg---~v~C~~c~~ 37 (290)
.|-+|+.. .+...|+||-.|. .-+|..|-.
T Consensus 2 ~Cd~C~~~-pI~G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 2 KCDSCGIE-PIPGTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCCC-ccccceEECCCCCCCCCccCHHHHh
Confidence 36778762 2448899999997 346666633
No 169
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.20 E-value=1.7 Score=37.67 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=23.4
Q ss_pred cccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 24 CRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 24 Cr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
|-.||.|||++|-.-+.. .+.. |.-|-...+
T Consensus 254 aTpCGHiFCWsCI~~w~~------ek~e--CPlCR~~~~ 284 (293)
T KOG0317|consen 254 ATPCGHIFCWSCILEWCS------EKAE--CPLCREKFQ 284 (293)
T ss_pred cCcCcchHHHHHHHHHHc------cccC--CCcccccCC
Confidence 999999999999877764 2222 888876653
No 170
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=60.73 E-value=1.4 Score=36.25 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.4
Q ss_pred ccccCCCCCcc---c---------ccccccccccee
Q 022927 8 NLRLISHIRSN---L---------LQHHCRCCGRTL 31 (290)
Q Consensus 8 ~~~c~~~f~~~---~---------rrhhCr~cg~v~ 31 (290)
|-.|++.|++- + |||-|+.||+-|
T Consensus 120 CrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgf 155 (267)
T KOG3576|consen 120 CRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGF 155 (267)
T ss_pred eehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcc
Confidence 55667777632 2 366677776654
No 171
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=60.44 E-value=4.2 Score=24.67 Aligned_cols=30 Identities=13% Similarity=-0.105 Sum_probs=20.0
Q ss_pred cccccCCCCCccccccccccccce-ecCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRT-LCHEHSS 37 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c~~ 37 (290)
+|-+|+. +.+..+|++|..|... +|..|-.
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~~ 32 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICFS 32 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHhh
Confidence 5677774 3566788999888655 5655543
No 172
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.92 E-value=7.1 Score=20.90 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=3.1
Q ss_pred cccccce
Q 022927 24 CRCCGRT 30 (290)
Q Consensus 24 Cr~cg~v 30 (290)
|..||..
T Consensus 17 Cp~CG~~ 23 (26)
T PF10571_consen 17 CPHCGYD 23 (26)
T ss_pred CCCCCCC
Confidence 4444443
No 173
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=57.54 E-value=5.6 Score=24.12 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=22.7
Q ss_pred cccccCCCCCccccccccccc-cceecCCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCC-GRTLCHEHSSD 38 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~c-g~v~C~~c~~~ 38 (290)
.|-+|++ -++..|++|..| ..-+|..|-..
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCc
Confidence 5788988 567789999999 45578777543
No 174
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=56.83 E-value=4.9 Score=25.25 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=11.8
Q ss_pred CCcccccccccCCCCCcccc
Q 022927 1 MTHHDLQNLRLISHIRSNLL 20 (290)
Q Consensus 1 ~~~~~~~~~~c~~~f~~~~r 20 (290)
|..-.-.|-.|+..|.++.+
T Consensus 1 MP~Yey~C~~Cg~~fe~~~~ 20 (52)
T TIGR02605 1 MPIYEYRCTACGHRFEVLQK 20 (52)
T ss_pred CCCEEEEeCCCCCEeEEEEe
Confidence 33344456777777776644
No 175
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=5.5 Score=33.52 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=24.3
Q ss_pred cccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927 26 CCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT 64 (290)
Q Consensus 26 ~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~ 64 (290)
.||..||+-|.-+|..+ ......|..|...+...
T Consensus 64 lCGHLFCWpClyqWl~~-----~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 64 LCGHLFCWPCLYQWLQT-----RPNSKECPVCKAEVSID 97 (230)
T ss_pred ecccceehHHHHHHHhh-----cCCCeeCCccccccccc
Confidence 69999999999988642 23445667777776543
No 176
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=2.7 Score=36.01 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=22.5
Q ss_pred cccccccceecCCCCCC-cccccCCCCCCcccccccchhhh
Q 022927 22 HHCRCCGRTLCHEHSSD-QMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 22 hhCr~cg~v~C~~c~~~-~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
--|+.||.|||..|.-. +. .+..--|..|-++.
T Consensus 228 ps~t~CgHlFC~~Cl~~~~t-------~~k~~~CplCRak~ 261 (271)
T COG5574 228 PSCTPCGHLFCLSCLLISWT-------KKKYEFCPLCRAKV 261 (271)
T ss_pred cccccccchhhHHHHHHHHH-------hhccccCchhhhhc
Confidence 45899999999999765 21 13334577776654
No 177
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.30 E-value=6.5 Score=33.31 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=29.1
Q ss_pred cccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
+|..|...=+ ....+=-.|+.|||..|...... ++|..|-..+
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~~----------~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASSP----------DVCPLCKKSI 47 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCCc----------ccccccccee
Confidence 4555554333 66666778999999999765421 1888887665
No 178
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=53.18 E-value=7.4 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=13.2
Q ss_pred ecCCCCCCcccccCCCCCCcccccccchh
Q 022927 31 LCHEHSSDQMTLPQFGIHTNVRVCADCFN 59 (290)
Q Consensus 31 ~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 59 (290)
||+.|.......+ ....|+|..|-.
T Consensus 5 fC~~CG~~t~~~~----~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAP----GGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-S----SSS-EEESSSS-
T ss_pred ccCcCCccccCCC----CcCEeECCCCcC
Confidence 6777776554433 368899998854
No 179
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.00 E-value=1.7 Score=42.67 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=24.9
Q ss_pred cccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 24 CRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 24 Cr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
=-.||.+||..|...+. ....|-|..|-..+
T Consensus 658 I~kC~H~FC~~Cvq~r~-------etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 658 ITKCGHVFCEECVQTRY-------ETRQRKCPKCNAAF 688 (698)
T ss_pred HHhcchHHHHHHHHHHH-------HHhcCCCCCCCCCC
Confidence 35799999999987663 47899999996554
No 180
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=52.13 E-value=2.9 Score=25.20 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=24.5
Q ss_pred cccccCCCCCccccccccccccceecCCCCCCccc
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMT 41 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~ 41 (290)
+|..|...|.--..-.-.. ||.+||..|...+..
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~ 35 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLK 35 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHH
Confidence 4778888886644444444 999999999877654
No 181
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=51.59 E-value=12 Score=24.97 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=18.6
Q ss_pred cccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 9 LRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 9 ~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
+.|+.=|.+++--+-=-.|..+||+.|-+.. .| .. |..|+...
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~-----~~--~~---CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDC-----IG--SE---CPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGG-----TT--TB----SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHh-----cC--CC---CCCcCChH
Confidence 5677778876554433899999999997543 23 11 77777543
No 182
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=51.45 E-value=15 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.098 Sum_probs=21.4
Q ss_pred ccccCCCCCccccccccccccceecCCC
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEH 35 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c 35 (290)
|-.|.+...-+. ..+|..|+..+-..|
T Consensus 3 C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 567888887777 899999988777766
No 183
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=50.80 E-value=8.5 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=11.9
Q ss_pred ecCCCCCCc-ccccCCCCCCcccccccchh
Q 022927 31 LCHEHSSDQ-MTLPQFGIHTNVRVCADCFN 59 (290)
Q Consensus 31 ~C~~c~~~~-~~~~~~~~~~~~rvC~~C~~ 59 (290)
||..|...- ..+|... +.+-.||..|..
T Consensus 2 fC~~CG~~l~~~ip~gd-~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGD-DRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT--SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCCC-CccceECCCCCC
Confidence 455554432 3344333 566669999853
No 184
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.60 E-value=5.7 Score=25.79 Aligned_cols=13 Identities=31% Similarity=1.083 Sum_probs=11.1
Q ss_pred ccccccccceecC
Q 022927 21 QHHCRCCGRTLCH 33 (290)
Q Consensus 21 rhhCr~cg~v~C~ 33 (290)
--.|-.||+|+|.
T Consensus 18 ~~NCl~CGkIiC~ 30 (57)
T PF06221_consen 18 APNCLNCGKIICE 30 (57)
T ss_pred cccccccChhhcc
Confidence 4579999999997
No 185
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=50.34 E-value=4.8 Score=28.92 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred CCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 13 SHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 13 ~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
..++++..|-||..|++..- -+..+|-.++-...-.|..|.+.+.
T Consensus 25 ~~~~i~~~rS~C~~C~~~L~-----~~~lIPi~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 25 PSLSIIFPRSHCPHCGHPLS-----WWDLIPILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred cCCCccCCCCcCcCCCCcCc-----ccccchHHHHHHhCCCCcccCCCCC
Confidence 45788888999999987532 2333444443233346888877664
No 186
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=50.28 E-value=9.2 Score=23.09 Aligned_cols=15 Identities=33% Similarity=1.205 Sum_probs=9.8
Q ss_pred ccccccccceecCCC
Q 022927 21 QHHCRCCGRTLCHEH 35 (290)
Q Consensus 21 rhhCr~cg~v~C~~c 35 (290)
...|+.||+.||.++
T Consensus 13 ~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 13 PFKCKHCGKSFCLKH 27 (43)
T ss_dssp HEE-TTTS-EE-TTT
T ss_pred CeECCCCCcccCccc
Confidence 466999999999865
No 187
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=50.11 E-value=7.1 Score=23.94 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.0
Q ss_pred cccccCCCCCcccccccccccc-ceecCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCG-RTLCHEHSS 37 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg-~v~C~~c~~ 37 (290)
.|.+|.+ .+...|.||..|. .-+|..|-.
T Consensus 2 ~C~~C~~--~i~g~r~~C~~C~d~dLC~~Cf~ 31 (46)
T cd02249 2 SCDGCLK--PIVGVRYHCLVCEDFDLCSSCYA 31 (46)
T ss_pred CCcCCCC--CCcCCEEECCCCCCCcCHHHHHC
Confidence 3778888 3456899999997 336666644
No 188
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=49.61 E-value=8.4 Score=28.92 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=9.8
Q ss_pred ccccCCCCCcccccccccccc
Q 022927 8 NLRLISHIRSNLLQHHCRCCG 28 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg 28 (290)
|..|+..|.+..+...|..||
T Consensus 73 C~~Cg~~~~~~~~~~~CP~Cg 93 (115)
T TIGR00100 73 CEDCSEEVSPEIDLYRCPKCH 93 (115)
T ss_pred cccCCCEEecCCcCccCcCCc
Confidence 455555555544433344443
No 189
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=48.81 E-value=5.2 Score=35.81 Aligned_cols=13 Identities=46% Similarity=0.945 Sum_probs=10.8
Q ss_pred cccccccccccce
Q 022927 18 NLLQHHCRCCGRT 30 (290)
Q Consensus 18 ~~rrhhCr~cg~v 30 (290)
--|-||||.|.+-
T Consensus 102 apRSHHCrkCnrC 114 (414)
T KOG1314|consen 102 APRSHHCRKCNRC 114 (414)
T ss_pred CCccccchHHHHH
Confidence 3589999999874
No 190
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=48.80 E-value=8.9 Score=30.61 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=10.1
Q ss_pred ccccccccccccce
Q 022927 17 SNLLQHHCRCCGRT 30 (290)
Q Consensus 17 ~~~rrhhCr~cg~v 30 (290)
--.|-|||+.||+.
T Consensus 58 kp~Rs~HC~~C~~C 71 (174)
T PF01529_consen 58 KPPRSHHCRVCNRC 71 (174)
T ss_pred CCCcceeccccccc
Confidence 45578888888764
No 191
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=48.63 E-value=14 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=11.1
Q ss_pred cccccCCCCC-ccccccccccccce
Q 022927 7 QNLRLISHIR-SNLLQHHCRCCGRT 30 (290)
Q Consensus 7 ~~~~c~~~f~-~~~rrhhCr~cg~v 30 (290)
.|-.|+..|- .-..|++|..||..
T Consensus 22 fCP~Cg~~~m~~~~~r~~C~~Cgyt 46 (50)
T PRK00432 22 FCPRCGSGFMAEHLDRWHCGKCGYT 46 (50)
T ss_pred cCcCCCcchheccCCcEECCCcCCE
Confidence 3445554322 22235556666554
No 192
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=48.29 E-value=8.5 Score=23.88 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.9
Q ss_pred ccccccccceecCC
Q 022927 21 QHHCRCCGRTLCHE 34 (290)
Q Consensus 21 rhhCr~cg~v~C~~ 34 (290)
|+.|+.||.|+=..
T Consensus 1 ky~C~~CgyvYd~~ 14 (47)
T PF00301_consen 1 KYQCPVCGYVYDPE 14 (47)
T ss_dssp EEEETTTSBEEETT
T ss_pred CcCCCCCCEEEcCC
Confidence 67899999887543
No 193
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=47.81 E-value=4.6 Score=38.14 Aligned_cols=88 Identities=14% Similarity=-0.002 Sum_probs=62.4
Q ss_pred cchHHHHHHHcCCHHHHHHHHHCC-CCCcccccCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCChhhh---
Q 022927 192 NGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDC--- 264 (290)
Q Consensus 192 ~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~--- 264 (290)
.+|+|+.|...|.++++.+++-.+ .++|-.-.+|.. |.++.. |.++.+..|+.+++..+.+|..|+-+...
T Consensus 58 qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~ 135 (528)
T KOG1595|consen 58 QRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLHC 135 (528)
T ss_pred cccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccccCCCcccCcccc
Confidence 456899999999999999888654 345544444444 555444 55677788888999999999888766544
Q ss_pred hhc---cCCHHHHHHHHhCC
Q 022927 265 APV---TLQYKMRQKMEEDK 281 (290)
Q Consensus 265 A~~---~g~~~iv~~Ll~~G 281 (290)
|.. .+...+++.|++.+
T Consensus 136 ~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 136 AFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred cccCCccccccHHHHHHhcc
Confidence 333 44566788887775
No 194
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=47.45 E-value=4.6 Score=33.17 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=34.6
Q ss_pred cccccccCCCCCccccccccccccceecCCCCCCcccccC--------CCCCCcccccccchhhhc
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQ--------FGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~--------~~~~~~~rvC~~C~~~~~ 62 (290)
..+|-.|...|. -- .--.||.+||..|-..+..... ....+....|..|...+.
T Consensus 18 ~~~CpICld~~~---dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 18 DFDCNICLDQVR---DP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCccCCCcCC---Cc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 356777877664 22 2357999999999976643211 111234568999998774
No 195
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=8 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.3
Q ss_pred ccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
|..|+.+.-++.|.- .|-.|||-+|..- .+.+.|..|-..+.
T Consensus 93 Cd~Cd~PI~IYGRmI---PCkHvFCl~CAr~----------~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 93 CDRCDFPIAIYGRMI---PCKHVFCLECARS----------DSDKICPLCDDRVQ 134 (389)
T ss_pred ecccCCcceeeeccc---ccchhhhhhhhhc----------CccccCcCcccHHH
Confidence 567888888888876 4556899988432 23566666665543
No 196
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=46.64 E-value=9.7 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=14.2
Q ss_pred CCccccccccccccceecC
Q 022927 15 IRSNLLQHHCRCCGRTLCH 33 (290)
Q Consensus 15 f~~~~rrhhCr~cg~v~C~ 33 (290)
..++.+--.|+.||++|=.
T Consensus 52 ~~Llv~Pa~CkkCGfef~~ 70 (97)
T COG3357 52 KRLLVRPARCKKCGFEFRD 70 (97)
T ss_pred ceEEecChhhcccCccccc
Confidence 3466677889999998744
No 197
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=46.34 E-value=17 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=21.3
Q ss_pred ccCCCCCc----cccccccccccceecCCCCCCc
Q 022927 10 RLISHIRS----NLLQHHCRCCGRTLCHEHSSDQ 39 (290)
Q Consensus 10 ~c~~~f~~----~~rrhhCr~cg~v~C~~c~~~~ 39 (290)
+|+..+.. ...+-.|..||..||..|...+
T Consensus 25 ~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 25 DCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 56555444 3456779999999999997543
No 198
>PF12773 DZR: Double zinc ribbon
Probab=46.33 E-value=17 Score=22.45 Aligned_cols=10 Identities=20% Similarity=0.810 Sum_probs=4.6
Q ss_pred ccccccchhh
Q 022927 51 VRVCADCFNS 60 (290)
Q Consensus 51 ~rvC~~C~~~ 60 (290)
.++|..|...
T Consensus 29 ~~~C~~Cg~~ 38 (50)
T PF12773_consen 29 KKICPNCGAE 38 (50)
T ss_pred CCCCcCCcCC
Confidence 3445555443
No 199
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=45.46 E-value=9.5 Score=20.25 Aligned_cols=7 Identities=29% Similarity=1.350 Sum_probs=3.1
Q ss_pred ccccccc
Q 022927 51 VRVCADC 57 (290)
Q Consensus 51 ~rvC~~C 57 (290)
.|.|..|
T Consensus 16 ~~fC~~C 22 (26)
T PF13248_consen 16 AKFCPNC 22 (26)
T ss_pred cccChhh
Confidence 4444444
No 200
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=42.73 E-value=11 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=17.6
Q ss_pred cccccCC-CCCccccccccccccce-ecCCC
Q 022927 7 QNLRLIS-HIRSNLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 7 ~~~~c~~-~f~~~~rrhhCr~cg~v-~C~~c 35 (290)
.|-+|.+ .|. ..|.+|-.|..+ +|..|
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~dydLC~~C 30 (49)
T cd02345 2 SCSACRKQDIS--GIRFPCQVCRDYSLCLGC 30 (49)
T ss_pred cCCCCCCCCce--EeeEECCCCCCcCchHHH
Confidence 3677877 555 577888888654 44444
No 201
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=42.04 E-value=15 Score=21.26 Aligned_cols=11 Identities=9% Similarity=-0.106 Sum_probs=4.8
Q ss_pred ccccCCCCCcc
Q 022927 8 NLRLISHIRSN 18 (290)
Q Consensus 8 ~~~c~~~f~~~ 18 (290)
|-.|+..|.+-
T Consensus 5 CP~C~~~~~v~ 15 (38)
T TIGR02098 5 CPNCKTSFRVV 15 (38)
T ss_pred CCCCCCEEEeC
Confidence 34444444433
No 202
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=42.03 E-value=15 Score=22.43 Aligned_cols=11 Identities=0% Similarity=-0.450 Sum_probs=8.1
Q ss_pred ccccCCCCCcc
Q 022927 8 NLRLISHIRSN 18 (290)
Q Consensus 8 ~~~c~~~f~~~ 18 (290)
|-.|+..|.+-
T Consensus 5 C~~Cg~~~~~~ 15 (44)
T smart00659 5 CGECGRENEIK 15 (44)
T ss_pred CCCCCCEeecC
Confidence 56788888765
No 203
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=41.90 E-value=10 Score=33.75 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=10.9
Q ss_pred CcccccccccCCCCCcccccccccccc
Q 022927 2 THHDLQNLRLISHIRSNLLQHHCRCCG 28 (290)
Q Consensus 2 ~~~~~~~~~c~~~f~~~~rrhhCr~cg 28 (290)
+|||..|..| +.+.-|||--=+
T Consensus 123 aHHCsvC~rC-----vLKmDHHCpWi~ 144 (307)
T KOG1315|consen 123 AHHCSVCNRC-----VLKMDHHCPWIN 144 (307)
T ss_pred cccchhhhhh-----hhccccCCccee
Confidence 4555555554 333445555443
No 204
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=41.82 E-value=19 Score=20.31 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=11.7
Q ss_pred ccccCCCCCcccc-ccccccccc
Q 022927 8 NLRLISHIRSNLL-QHHCRCCGR 29 (290)
Q Consensus 8 ~~~c~~~f~~~~r-rhhCr~cg~ 29 (290)
|..|+..|.+-.+ .-.|+.||.
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCcCCCeeEcCCCCcEECCcCCC
Confidence 5677777774433 235666663
No 205
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.71 E-value=14 Score=27.76 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=5.6
Q ss_pred ccccCCCCCcc
Q 022927 8 NLRLISHIRSN 18 (290)
Q Consensus 8 ~~~c~~~f~~~ 18 (290)
|..|+..|.+-
T Consensus 74 C~~Cg~~~~~~ 84 (117)
T PRK00564 74 CKDCSHVFKPN 84 (117)
T ss_pred hhhCCCccccC
Confidence 45555555544
No 206
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=41.45 E-value=13 Score=23.27 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=7.1
Q ss_pred ccccCCCCCcc
Q 022927 8 NLRLISHIRSN 18 (290)
Q Consensus 8 ~~~c~~~f~~~ 18 (290)
|+.|++.|.+.
T Consensus 9 C~~Cg~~~~~~ 19 (49)
T COG1996 9 CARCGREVELD 19 (49)
T ss_pred hhhcCCeeehh
Confidence 66777777633
No 207
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=40.75 E-value=16 Score=19.31 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=10.6
Q ss_pred ccccccccccccee
Q 022927 18 NLLQHHCRCCGRTL 31 (290)
Q Consensus 18 ~~rrhhCr~cg~v~ 31 (290)
-.|.|.|..||+.|
T Consensus 11 ~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 11 GEKPYKCPYCGKSF 24 (26)
T ss_dssp SSSSEEESSSSEEE
T ss_pred CCCCCCCCCCcCee
Confidence 35678899998876
No 208
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=40.66 E-value=14 Score=32.59 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=14.4
Q ss_pred ccccccCCCCCccccccccccccc
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGR 29 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~ 29 (290)
+-|..|+.- .-.|-|||+.|+.
T Consensus 114 ~~C~~C~~~--rPpRs~HCsvC~~ 135 (299)
T KOG1311|consen 114 KYCDTCQLY--RPPRSSHCSVCNN 135 (299)
T ss_pred EEcCcCccc--CCCCcccchhhcc
Confidence 345555543 6677888888875
No 209
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=40.56 E-value=7.7 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=10.1
Q ss_pred ccccCCCCCcccccccccccc
Q 022927 8 NLRLISHIRSNLLQHHCRCCG 28 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg 28 (290)
|-.|+..|.+-..+..|..||
T Consensus 73 C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PF01155_consen 73 CRDCGHEFEPDEFDFSCPRCG 93 (113)
T ss_dssp ETTTS-EEECHHCCHH-SSSS
T ss_pred CCCCCCEEecCCCCCCCcCCc
Confidence 555666665555544454444
No 210
>PRK12495 hypothetical protein; Provisional
Probab=40.19 E-value=2.3e+02 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.668 Sum_probs=18.2
Q ss_pred ccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 21 rhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
..||..||. +|| - ..-+.+|..|......
T Consensus 42 a~hC~~CG~-----------PIp--a-~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGD-----------PIF--R-HDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccC-----------ccc--C-CCCeeECCCCCCcccc
Confidence 467888874 333 2 2457788888776643
No 211
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.83 E-value=3.8 Score=39.74 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=37.0
Q ss_pred cccccCCCCCcccccccccccc-ceecCCCCCCcccccCCCCCCcccccccch
Q 022927 7 QNLRLISHIRSNLLQHHCRCCG-RTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg-~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~ 58 (290)
+|-.|-..|+|..+.|+|++|| .|+|.-|+..++..-... -..+|+|..=-
T Consensus 56 h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~m~~~~~~-l~~~~~~e~v~ 107 (634)
T KOG1818|consen 56 HENPNVQLFTLKLTDHCVKNCGHGVHCEIATREFMDLLKSL-LESQRIHEEVK 107 (634)
T ss_pred ccCCCcccchhhhHHHHHhcCCcchhHHHHHHHHHHHHHhh-hccccccchHH
Confidence 4567888999999999999999 899999887766543333 24555555433
No 212
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=39.51 E-value=7.2 Score=37.50 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 022927 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC 253 (290)
Q Consensus 199 A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~ 253 (290)
|+..+....+-.|+++++..+..|..|.+|+|++...|..++++.++....+++.
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~ 457 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISL 457 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhc
Confidence 3344444455556667777788888888888888888888887777665444433
No 213
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=38.53 E-value=18 Score=20.82 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=3.0
Q ss_pred ccccccce
Q 022927 23 HCRCCGRT 30 (290)
Q Consensus 23 hCr~cg~v 30 (290)
+|+.||.+
T Consensus 13 rC~~Cg~~ 20 (37)
T PF12172_consen 13 RCRDCGRV 20 (37)
T ss_dssp E-TTT--E
T ss_pred EcCCCCCE
Confidence 46666665
No 214
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=38.23 E-value=12 Score=33.90 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=8.9
Q ss_pred ecCCCCCCcccccCCCCCCcccccccchhh
Q 022927 31 LCHEHSSDQMTLPQFGIHTNVRVCADCFNS 60 (290)
Q Consensus 31 ~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~ 60 (290)
-|..|....+.+ . ..|...|..|-..
T Consensus 287 kC~~C~~Rt~sl---~-r~P~~~C~~Cg~~ 312 (344)
T PF09332_consen 287 KCKDCGNRTISL---E-RLPKKHCSNCGSS 312 (344)
T ss_dssp E-T-TS-EEEES---S-SS--S--TTT-S-
T ss_pred ECCCCCCeeeec---c-cCCCCCCCcCCcC
Confidence 555665544433 1 2466778888643
No 215
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.41 E-value=18 Score=20.38 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.4
Q ss_pred cccccccccee
Q 022927 21 QHHCRCCGRTL 31 (290)
Q Consensus 21 rhhCr~cg~v~ 31 (290)
++.|+.||.++
T Consensus 1 ~~~C~~CGy~y 11 (33)
T cd00350 1 KYVCPVCGYIY 11 (33)
T ss_pred CEECCCCCCEE
Confidence 36789999874
No 216
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=37.35 E-value=7.7 Score=26.12 Aligned_cols=54 Identities=20% Similarity=0.484 Sum_probs=30.1
Q ss_pred ccccCCCCCccccccccccccceecCCCCCCcccccCC--CC-------CC--cccccccchhhhc
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQF--GI-------HT--NVRVCADCFNSSS 62 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~--~~-------~~--~~rvC~~C~~~~~ 62 (290)
|+.|...=.-..==--|..||.-+|...+... .+|.. ++ .+ +--+|..|+..+.
T Consensus 3 CY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e-~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~~ 67 (68)
T PF09947_consen 3 CYDCAEEGKDTDAVAVCIVCGAGLCMDHSKRE-EIPVWEGGYPFPSKKLKKPLPRILCPECHAALK 67 (68)
T ss_pred chhhhhcCCCccceehHHhcCchhhHHHHhhh-heeeeccCCCCccccccCCCCeeecHHHHHHhh
Confidence 44443332222233459999999999988643 22322 11 11 2227999987653
No 217
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=37.13 E-value=14 Score=23.57 Aligned_cols=14 Identities=0% Similarity=-0.311 Sum_probs=7.2
Q ss_pred ccccCCCCCccccc
Q 022927 8 NLRLISHIRSNLLQ 21 (290)
Q Consensus 8 ~~~c~~~f~~~~rr 21 (290)
|..|+..+|..-|+
T Consensus 2 C~~C~~~~Tp~WR~ 15 (54)
T cd00202 2 CSNCGTTTTPLWRR 15 (54)
T ss_pred CCCCCCCCCccccc
Confidence 45555555544444
No 218
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=37.08 E-value=14 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=5.8
Q ss_pred Ccccccccchh
Q 022927 49 TNVRVCADCFN 59 (290)
Q Consensus 49 ~~~rvC~~C~~ 59 (290)
.....|..|.+
T Consensus 24 ~~~~~CP~Cg~ 34 (42)
T PF09723_consen 24 DDPVPCPECGS 34 (42)
T ss_pred CCCCcCCCCCC
Confidence 34455555554
No 219
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.84 E-value=25 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=12.5
Q ss_pred ccccCCCCC--ccccccccccccce
Q 022927 8 NLRLISHIR--SNLLQHHCRCCGRT 30 (290)
Q Consensus 8 ~~~c~~~f~--~~~rrhhCr~cg~v 30 (290)
|-.|+..-. ...|.+.|..||..
T Consensus 31 C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 31 CPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred ccCcccccccccccceEEcCCCCCE
Confidence 444544333 35566666666654
No 220
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=36.80 E-value=9.4 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=17.5
Q ss_pred ccccccccccccceecCCCCCCcc
Q 022927 17 SNLLQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 17 ~~~rrhhCr~cg~v~C~~c~~~~~ 40 (290)
.++....--.||.+||..|.....
T Consensus 7 ~~~~~~~~~~CGH~fC~~C~~~~~ 30 (39)
T PF13923_consen 7 ELRDPVVVTPCGHSFCKECIEKYL 30 (39)
T ss_dssp B-SSEEEECTTSEEEEHHHHHHHH
T ss_pred cccCcCEECCCCCchhHHHHHHHH
Confidence 445566788999999999966543
No 221
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=36.63 E-value=12 Score=35.99 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=44.2
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927 232 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV 284 (290)
Q Consensus 232 A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi 284 (290)
|+..+....+-.|+.+|+..+.+|..|.||+|++...|..++.+.++....++
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~ 455 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAI 455 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhh
Confidence 45556666777788889999999999999999999999999999988754444
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=36.32 E-value=31 Score=29.15 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHHHHHHHHHCCC
Q 022927 195 GLRDAIKNGDAAAVKKLLSEGV 216 (290)
Q Consensus 195 ~Lh~A~~~g~~~~v~~Ll~~g~ 216 (290)
+=-.|...++.+.-+.|++.|+
T Consensus 18 ~gd~a~ern~~rly~~lv~~gv 39 (271)
T KOG1709|consen 18 VGDLALERNQSRLYRRLVEAGV 39 (271)
T ss_pred chHHHHHccHHHHHHHHHHcCC
Confidence 3344555555555555555554
No 223
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=36.25 E-value=16 Score=32.24 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=18.0
Q ss_pred CcccccccccCCCCCccccccccccccc
Q 022927 2 THHDLQNLRLISHIRSNLLQHHCRCCGR 29 (290)
Q Consensus 2 ~~~~~~~~~c~~~f~~~~rrhhCr~cg~ 29 (290)
+|||-.|-.| +-++-|||+-=|.
T Consensus 127 s~HCsvC~~C-----V~rfDHHC~Wvnn 149 (299)
T KOG1311|consen 127 SSHCSVCNNC-----VLRFDHHCPWLNN 149 (299)
T ss_pred cccchhhccc-----ccccCCCCCCccc
Confidence 6899999987 5556799987663
No 224
>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....
Probab=35.95 E-value=22 Score=22.84 Aligned_cols=13 Identities=46% Similarity=1.160 Sum_probs=8.9
Q ss_pred cccccce-------ecCCCC
Q 022927 24 CRCCGRT-------LCHEHS 36 (290)
Q Consensus 24 Cr~cg~v-------~C~~c~ 36 (290)
||.||.. .|++|.
T Consensus 18 CrRCG~~syH~qK~~CasCG 37 (55)
T PF01907_consen 18 CRRCGRRSYHIQKKTCASCG 37 (55)
T ss_dssp -TTTSSEEEETTTTEETTTB
T ss_pred ecccCCeeeecCCCcccccC
Confidence 8888876 676665
No 225
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=35.84 E-value=6 Score=22.90 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=9.8
Q ss_pred ccccCCCC-Cccccccc
Q 022927 8 NLRLISHI-RSNLLQHH 23 (290)
Q Consensus 8 ~~~c~~~f-~~~~rrhh 23 (290)
|-.|.+.+ ...+||+|
T Consensus 2 C~~C~~Ey~~p~~RR~~ 18 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFH 18 (35)
T ss_dssp -HHHHHHHCSTTSTTTT
T ss_pred CHHHHHHHcCCCCCccc
Confidence 34454453 57888888
No 226
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.65 E-value=19 Score=31.96 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=28.3
Q ss_pred ccccccccccc------eecCCCCCCcccccCCCC-----CCccc--ccccchhhhccc
Q 022927 19 LLQHHCRCCGR------TLCHEHSSDQMTLPQFGI-----HTNVR--VCADCFNSSSRT 64 (290)
Q Consensus 19 ~rrhhCr~cg~------v~C~~c~~~~~~~~~~~~-----~~~~r--vC~~C~~~~~~~ 64 (290)
.|.-||-.|+- +-|..|.+.+ .+.++.. ...+| +|+.|...++..
T Consensus 208 ~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~ 265 (305)
T TIGR01562 208 LRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQGYLKIL 265 (305)
T ss_pred ceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeeccccccchhhh
Confidence 36778888873 4677776643 3333322 12355 999999988654
No 227
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=35.01 E-value=19 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=15.4
Q ss_pred eecCCCCCCcccccCCCCCCcccccccchh
Q 022927 30 TLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59 (290)
Q Consensus 30 v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~ 59 (290)
.||..|.+.-.+ ..+....+ +|..|--
T Consensus 2 ~FCp~C~nlL~p--~~~~~~~~-~C~~C~Y 28 (35)
T PF02150_consen 2 RFCPECGNLLYP--KEDKEKRV-ACRTCGY 28 (35)
T ss_dssp -BETTTTSBEEE--EEETTTTE-EESSSS-
T ss_pred eeCCCCCccceE--cCCCccCc-CCCCCCC
Confidence 488899876654 22322333 7888843
No 228
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.95 E-value=18 Score=21.18 Aligned_cols=13 Identities=0% Similarity=-0.358 Sum_probs=6.4
Q ss_pred cccccCCCCCccc
Q 022927 7 QNLRLISHIRSNL 19 (290)
Q Consensus 7 ~~~~c~~~f~~~~ 19 (290)
.|-.|+..|.++.
T Consensus 7 ~C~~Cg~~fe~~~ 19 (41)
T smart00834 7 RCEDCGHTFEVLQ 19 (41)
T ss_pred EcCCCCCEEEEEE
Confidence 3455555555443
No 229
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=34.90 E-value=21 Score=27.42 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=8.2
Q ss_pred ccceecCCCCC
Q 022927 27 CGRTLCHEHSS 37 (290)
Q Consensus 27 cg~v~C~~c~~ 37 (290)
-|.|||.-|-.
T Consensus 42 dG~v~CPvC~~ 52 (131)
T COG1645 42 DGEVFCPVCGY 52 (131)
T ss_pred CCeEECCCCCc
Confidence 47888888864
No 230
>PRK00420 hypothetical protein; Validated
Probab=34.78 E-value=27 Score=26.09 Aligned_cols=12 Identities=0% Similarity=-0.443 Sum_probs=7.1
Q ss_pred cccccccCCCCC
Q 022927 5 DLQNLRLISHIR 16 (290)
Q Consensus 5 ~~~~~~c~~~f~ 16 (290)
..+|-.|+.+|.
T Consensus 23 ~~~CP~Cg~pLf 34 (112)
T PRK00420 23 SKHCPVCGLPLF 34 (112)
T ss_pred cCCCCCCCCcce
Confidence 345666776554
No 231
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=34.56 E-value=13 Score=23.87 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=7.3
Q ss_pred cccccccce
Q 022927 22 HHCRCCGRT 30 (290)
Q Consensus 22 hhCr~cg~v 30 (290)
-+||+||+-
T Consensus 11 t~CrRCGk~ 19 (60)
T PF10892_consen 11 TPCRRCGKS 19 (60)
T ss_pred ehhhhhCcc
Confidence 589999974
No 232
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=34.23 E-value=21 Score=21.85 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred cccccCCCCCcccccccccccc-ceecCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCG-RTLCHEHSS 37 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg-~v~C~~c~~ 37 (290)
.|-+|++. .+...|++|..|. .-+|..|-.
T Consensus 2 ~Cd~C~~~-~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQ-GIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCC-CcccCeEECCCCCCccchHHHhC
Confidence 36677754 5667789999994 447777754
No 233
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=33.72 E-value=12 Score=22.69 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=13.6
Q ss_pred cccCCCCCccccccccccccceecCCCCCCcc
Q 022927 9 LRLISHIRSNLLQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 9 ~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~ 40 (290)
-.|.. |+-....--=-.||.+||.+|..+..
T Consensus 2 pIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 2 PICKE-FSTEENPPMVLPCGHVFCKDCLQKLS 32 (43)
T ss_dssp TTT-----TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred Ccccc-ccCCCCCCEEEeCccHHHHHHHHHHH
Confidence 34445 54433333334588888888765443
No 234
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=33.66 E-value=18 Score=20.78 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=3.0
Q ss_pred cccccccch
Q 022927 50 NVRVCADCF 58 (290)
Q Consensus 50 ~~rvC~~C~ 58 (290)
..+||+.|-
T Consensus 23 ~~~VCD~CR 31 (34)
T PF01286_consen 23 DLPVCDKCR 31 (34)
T ss_dssp S-S--TTT-
T ss_pred Ccccccccc
Confidence 456666663
No 235
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=33.26 E-value=22 Score=21.28 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.2
Q ss_pred ccccchhhh
Q 022927 53 VCADCFNSS 61 (290)
Q Consensus 53 vC~~C~~~~ 61 (290)
||..|=..+
T Consensus 21 vC~~CG~Vl 29 (43)
T PF08271_consen 21 VCPNCGLVL 29 (43)
T ss_dssp EETTT-BBE
T ss_pred ECCCCCCEe
Confidence 566664333
No 236
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=33.05 E-value=9.9 Score=29.31 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=11.4
Q ss_pred cccccccccCCCCCcccccc
Q 022927 3 HHDLQNLRLISHIRSNLLQH 22 (290)
Q Consensus 3 ~~~~~~~~c~~~f~~~~rrh 22 (290)
.+...|+.|+++|..+ +||
T Consensus 70 ~d~i~clecGk~~k~L-krH 88 (132)
T PF05443_consen 70 PDYIICLECGKKFKTL-KRH 88 (132)
T ss_dssp SS-EE-TBT--EESBH-HHH
T ss_pred cCeeEEccCCcccchH-HHH
Confidence 4556799999999988 555
No 237
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.80 E-value=23 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.3
Q ss_pred ccccccccceecC
Q 022927 21 QHHCRCCGRTLCH 33 (290)
Q Consensus 21 rhhCr~cg~v~C~ 33 (290)
++.|+.||.|+=.
T Consensus 1 ~y~C~~CgyiYd~ 13 (50)
T cd00730 1 KYECRICGYIYDP 13 (50)
T ss_pred CcCCCCCCeEECC
Confidence 5789999988764
No 238
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.58 E-value=22 Score=26.58 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=3.9
Q ss_pred cccccccc
Q 022927 21 QHHCRCCG 28 (290)
Q Consensus 21 rhhCr~cg 28 (290)
+-.|+.||
T Consensus 70 ~~~C~~Cg 77 (113)
T PRK12380 70 QAWCWDCS 77 (113)
T ss_pred EEEcccCC
Confidence 34455554
No 239
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=32.35 E-value=44 Score=21.09 Aligned_cols=16 Identities=0% Similarity=-0.357 Sum_probs=9.1
Q ss_pred ccccccCCCCCccccc
Q 022927 6 LQNLRLISHIRSNLLQ 21 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rr 21 (290)
..|..|....|..-|+
T Consensus 4 ~~C~~C~~~~T~~WR~ 19 (52)
T smart00401 4 RSCSNCGTTETPLWRR 19 (52)
T ss_pred CCcCCCCCCCCCcccc
Confidence 4456666666654444
No 240
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.94 E-value=16 Score=32.43 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=29.9
Q ss_pred ccccccCCCCCcccc--ccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 6 LQNLRLISHIRSNLL--QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 6 ~~~~~c~~~f~~~~r--rhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
..|-.|.+.=.+-.+ --.- .||..||..|....... ....|..|...+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~-------~~~~CP~C~~~lr 54 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-------GSGSCPECDTPLR 54 (309)
T ss_pred CCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcC-------CCCCCCCCCCccc
Confidence 357777774333333 1222 89999999998775421 1236888866553
No 241
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.83 E-value=22 Score=27.44 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=10.9
Q ss_pred Ccccccccccccccee
Q 022927 16 RSNLLQHHCRCCGRTL 31 (290)
Q Consensus 16 ~~~~rrhhCr~cg~v~ 31 (290)
....-+..|+.||.+|
T Consensus 65 ~~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 65 EEEEAVLKCRNCGNEW 80 (135)
T ss_pred EecceEEECCCCCCEE
Confidence 3445677888888665
No 242
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=20 Score=32.97 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=21.4
Q ss_pred ccccccCCCCCcccc--ccccccccceecCCCCCCc
Q 022927 6 LQNLRLISHIRSNLL--QHHCRCCGRTLCHEHSSDQ 39 (290)
Q Consensus 6 ~~~~~c~~~f~~~~r--rhhCr~cg~v~C~~c~~~~ 39 (290)
++|-.|+...-+... +-+|| ||.-||+.|-.-+
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~ 341 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDW 341 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcch
Confidence 345555554444443 34599 9999999997543
No 243
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.18 E-value=24 Score=32.39 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.1
Q ss_pred cccccccCCCCCccc--cccccccccceecCCCCCCcc
Q 022927 5 DLQNLRLISHIRSNL--LQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~--rrhhCr~cg~v~C~~c~~~~~ 40 (290)
-++|-.|.....-.. =|+||-.||+.||.-|+..-.
T Consensus 368 ~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 368 SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred CCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 456666765554333 278999999999999986554
No 244
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=31.18 E-value=7.3 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=28.3
Q ss_pred ccccccCCCCCccccccccccccce-ecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRT-LCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
..|..|...+. ...-..||.. ||..|...... ..+.|..|.+.+
T Consensus 3 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~--------~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPR----DVVLLPCGHLCFCEECAERLLK--------RKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHH--------TTSBBTTTTBB-
T ss_pred CCCccCCccCC----ceEEeCCCChHHHHHHhHHhcc--------cCCCCCcCChhh
Confidence 45677766643 3556679999 99999766543 456677776655
No 245
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.00 E-value=24 Score=26.35 Aligned_cols=9 Identities=22% Similarity=0.852 Sum_probs=4.5
Q ss_pred ccccccccc
Q 022927 21 QHHCRCCGR 29 (290)
Q Consensus 21 rhhCr~cg~ 29 (290)
+-.|+.||.
T Consensus 70 ~~~C~~Cg~ 78 (114)
T PRK03681 70 ECWCETCQQ 78 (114)
T ss_pred EEEcccCCC
Confidence 445555553
No 246
>PRK06260 threonine synthase; Validated
Probab=30.96 E-value=33 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.6
Q ss_pred ccccccCCCCCccccccccccccce
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
..|..|++.|..-.....|..||..
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~ 28 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGL 28 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCe
Confidence 5699999999877777889889865
No 247
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=30.79 E-value=28 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=19.6
Q ss_pred cccccCCCCCccccccccccccce-ecCCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRT-LCHEHSSD 38 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c~~~ 38 (290)
.|-+|+.. .+...|++|..|... +|..|=..
T Consensus 2 ~Cd~C~~~-pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMF-PINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCC-CCccCeEECCCCCCccchHHhhCC
Confidence 46667643 345578899888744 66666443
No 248
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=30.68 E-value=44 Score=20.68 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.2
Q ss_pred cccccCCCCCcccccccccccc-ceecCCCCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCG-RTLCHEHSSD 38 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg-~v~C~~c~~~ 38 (290)
.|.+|.+..+ ...|.+|-.|. .-+|..|=..
T Consensus 2 ~Cd~C~~~~~-~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDIT-GTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCC-CCcEEECCCCCCcchhHHhhhC
Confidence 4778887665 33778899883 3366666443
No 249
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=30.49 E-value=24 Score=17.54 Aligned_cols=9 Identities=33% Similarity=1.272 Sum_probs=4.7
Q ss_pred cccccccee
Q 022927 23 HCRCCGRTL 31 (290)
Q Consensus 23 hCr~cg~v~ 31 (290)
.|..||+.|
T Consensus 2 ~C~~C~~~f 10 (23)
T PF00096_consen 2 KCPICGKSF 10 (23)
T ss_dssp EETTTTEEE
T ss_pred CCCCCCCcc
Confidence 355555554
No 250
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.87 E-value=39 Score=30.09 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=28.3
Q ss_pred ccccccccccc------eecCCCCCCcccccCCCC-----CCcccccccchhhhccc
Q 022927 19 LLQHHCRCCGR------TLCHEHSSDQMTLPQFGI-----HTNVRVCADCFNSSSRT 64 (290)
Q Consensus 19 ~rrhhCr~cg~------v~C~~c~~~~~~~~~~~~-----~~~~rvC~~C~~~~~~~ 64 (290)
.|.-||-.||- +-|..|.+.+ .+..+.. ...+-+|+.|...++..
T Consensus 210 ~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~~~~~~~~r~e~C~~C~~YlK~~ 265 (309)
T PRK03564 210 LRYLHCNLCESEWHVVRVKCSNCEQSG-KLHYWSLDSEQAAVKAESCGDCGTYLKIL 265 (309)
T ss_pred ceEEEcCCCCCcccccCccCCCCCCCC-ceeeeeecCCCcceEeeecccccccceec
Confidence 47778888874 4777776643 2333221 12445899999988754
No 251
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=29.59 E-value=20 Score=32.12 Aligned_cols=16 Identities=0% Similarity=-0.350 Sum_probs=14.0
Q ss_pred cccccccCCCCCcccc
Q 022927 5 DLQNLRLISHIRSNLL 20 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~r 20 (290)
.++|.+|.++||+|+=
T Consensus 41 gkECKICtrPfT~Frw 56 (377)
T KOG0153|consen 41 GKECKICTRPFTIFRW 56 (377)
T ss_pred CCccceecCcceEEEe
Confidence 5789999999999873
No 252
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=29.55 E-value=12 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.9
Q ss_pred ccccceecCCCCCCccc
Q 022927 25 RCCGRTLCHEHSSDQMT 41 (290)
Q Consensus 25 r~cg~v~C~~c~~~~~~ 41 (290)
-.||.+||..|......
T Consensus 14 l~CGH~FC~~Cl~~~~~ 30 (42)
T PF15227_consen 14 LPCGHSFCRSCLERLWK 30 (42)
T ss_dssp -SSSSEEEHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 36999999999766543
No 253
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=29.46 E-value=45 Score=20.92 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=10.0
Q ss_pred CCCChhhhhh-ccCCHHHHHHH
Q 022927 257 QGESPLDCAP-VTLQYKMRQKM 277 (290)
Q Consensus 257 ~G~TpL~~A~-~~g~~~iv~~L 277 (290)
.|.||+.++. ..|...+.++|
T Consensus 26 ~g~~Plel~~t~~G~~~V~~~L 47 (54)
T PF09722_consen 26 GGRTPLELLRTEAGAERVLDYL 47 (54)
T ss_pred CCCCHHHHHcChHHHHHHHHHH
Confidence 4556666555 33333333444
No 254
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.29 E-value=18 Score=31.85 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=25.0
Q ss_pred ccccccccccc------eecCCCCCCcc-cccCC---C-CCCcccccccchhhhcccC
Q 022927 19 LLQHHCRCCGR------TLCHEHSSDQM-TLPQF---G-IHTNVRVCADCFNSSSRTG 65 (290)
Q Consensus 19 ~rrhhCr~cg~------v~C~~c~~~~~-~~~~~---~-~~~~~rvC~~C~~~~~~~~ 65 (290)
+|..||-.||. +-|..|.+..- .+..+ + -...+-||+.|...++...
T Consensus 195 ~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd 252 (290)
T PF04216_consen 195 KRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVD 252 (290)
T ss_dssp EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEE
T ss_pred cEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHh
Confidence 47778888884 47888876542 22222 1 1244569999998886554
No 255
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=28.79 E-value=9.8 Score=23.82 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=29.3
Q ss_pred cccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
.|.-|+..|.+-.-| .|..||+--|+.|-... --.|+.|-..+
T Consensus 9 ~CDLCn~~~p~~~LR-QCvlCGRWaC~sCW~de-----------YY~CksC~Gii 51 (57)
T PF14445_consen 9 SCDLCNSSHPISELR-QCVLCGRWACNSCWQDE-----------YYTCKSCNGII 51 (57)
T ss_pred hHHhhcccCcHHHHH-HHhhhchhhhhhhhhhh-----------HhHHHhhhchh
Confidence 356788888765443 69999999999885332 23566666554
No 256
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=28.71 E-value=31 Score=21.60 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=5.6
Q ss_pred cccccccccc
Q 022927 19 LLQHHCRCCG 28 (290)
Q Consensus 19 ~rrhhCr~cg 28 (290)
+.+--|.+||
T Consensus 17 rk~~~CPrCG 26 (51)
T COG1998 17 RKNRFCPRCG 26 (51)
T ss_pred EccccCCCCC
Confidence 3344566666
No 257
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.57 E-value=42 Score=20.70 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=15.7
Q ss_pred ecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927 31 LCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 61 (290)
Q Consensus 31 ~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~ 61 (290)
||..|.+.-. +.........||..|--..
T Consensus 2 FCp~Cg~~l~--~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLI--PKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccc--cccCCCCCEEECCcCCCeE
Confidence 6777766332 2212122467899886443
No 258
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=28.49 E-value=35 Score=28.30 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=34.2
Q ss_pred cCCCcHHHHHHHcCCHHHHH-HHHHCCCC----CCCCCCCCCChhhhhhcc
Q 022927 223 KQGMSLLHLAALFNRTDIAF-ILMESGAN----MDCKNAQGESPLDCAPVT 268 (290)
Q Consensus 223 ~~g~TpLh~A~~~g~~~iv~-~Ll~~Ga~----in~~d~~G~TpL~~A~~~ 268 (290)
..-..|||-|+.-++.+++- ++++..+. +|-.|.+|..+|.+|...
T Consensus 220 ~kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~ 270 (280)
T KOG4591|consen 220 GKTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCR 270 (280)
T ss_pred CCCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHH
Confidence 34456999999999988764 56666554 466788999999988644
No 259
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.47 E-value=29 Score=25.55 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=11.8
Q ss_pred cccccceecCCCCC
Q 022927 24 CRCCGRTLCHEHSS 37 (290)
Q Consensus 24 Cr~cg~v~C~~c~~ 37 (290)
|+.||+|++-.+..
T Consensus 76 C~~Cg~i~~~~~~~ 89 (116)
T cd07153 76 CTKCGKVIDFEDCP 89 (116)
T ss_pred eCCCCCEEEecCcc
Confidence 99999999977653
No 260
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=28.46 E-value=43 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=16.7
Q ss_pred cccccC-CCCCccccccccccccce-ecCCC
Q 022927 7 QNLRLI-SHIRSNLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 7 ~~~~c~-~~f~~~~rrhhCr~cg~v-~C~~c 35 (290)
.|-+|+ ..+. ..|++|..|-.+ +|..|
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~d~dlC~~C 30 (49)
T cd02338 2 SCDGCGKSNFT--GRRYKCLICYDYDLCADC 30 (49)
T ss_pred CCCCCcCCCcE--EeeEEeCCCCCCccchhH
Confidence 467787 4444 677888887443 45544
No 261
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.22 E-value=31 Score=19.63 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=9.5
Q ss_pred ccccccccceecC
Q 022927 21 QHHCRCCGRTLCH 33 (290)
Q Consensus 21 rhhCr~cg~v~C~ 33 (290)
.+-|+.||.++=+
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 3679999988544
No 262
>PLN03148 Blue copper-like protein; Provisional
Probab=28.17 E-value=81 Score=25.38 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=13.7
Q ss_pred eeeecCCceeeecCCCC
Q 022927 109 LECKCGMPLCICEAPAP 125 (290)
Q Consensus 109 ~~~~~~~~~c~~~~p~p 125 (290)
-.|..||=+-|--.|.|
T Consensus 105 ghC~~GmKl~I~V~~~~ 121 (167)
T PLN03148 105 GQCFNGMKVTILVHPLP 121 (167)
T ss_pred CccccCCEEEEEEcCCC
Confidence 58999999988877654
No 263
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.84 E-value=15 Score=31.07 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=12.1
Q ss_pred ccccCCCCCccccccccccccc
Q 022927 8 NLRLISHIRSNLLQHHCRCCGR 29 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~ 29 (290)
|-.|...|.++ .++|..||.
T Consensus 23 C~~C~~~l~~~--~~~C~~Cg~ 42 (227)
T PRK11595 23 CSVCSRALRTL--KTCCPQCGL 42 (227)
T ss_pred cHHHHhhCCcc--cCcCccCCC
Confidence 45555565554 367777775
No 264
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=27.49 E-value=41 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=12.0
Q ss_pred ccccccCCCCCccccccccccccc
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGR 29 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~ 29 (290)
+-|+.|...-. .|-..||.||.
T Consensus 15 ~ICrkC~ARnp--~~A~~CRKCg~ 36 (48)
T PRK04136 15 KICMRCNARNP--WRATKCRKCGY 36 (48)
T ss_pred cchhcccCCCC--ccccccccCCC
Confidence 34555554432 35566777763
No 265
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=27.36 E-value=28 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.872 Sum_probs=8.0
Q ss_pred cccccccchhhh
Q 022927 50 NVRVCADCFNSS 61 (290)
Q Consensus 50 ~~rvC~~C~~~~ 61 (290)
..-+|..||..-
T Consensus 22 ~~dLC~~CF~~G 33 (45)
T cd02336 22 KYDLCPSCYQEG 33 (45)
T ss_pred ccccChHHHhCc
Confidence 456788887643
No 266
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=26.94 E-value=26 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=27.6
Q ss_pred ccccccccceecCCCCCCcc---cccCCCCCCcccccccchhhhc
Q 022927 21 QHHCRCCGRTLCHEHSSDQM---TLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 21 rhhCr~cg~v~C~~c~~~~~---~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
-.+|-.|++|||...-.+.. +-- ...+..|.+|..|-.-+.
T Consensus 23 Pf~Cd~C~~~FC~eHrsye~H~Cp~~-~~~~~~v~icp~cs~pv~ 66 (250)
T KOG3183|consen 23 PFKCDGCSGIFCLEHRSYESHHCPKG-LRIDVQVPICPLCSKPVP 66 (250)
T ss_pred ceeeCCccchhhhccchHhhcCCCcc-cccceeecccCCCCCCCC
Confidence 46899999999987754432 211 122567889999976554
No 267
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.75 E-value=3.4 Score=39.31 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=42.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHH
Q 022927 194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK 272 (290)
Q Consensus 194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~ 272 (290)
++++..........+..++.++..-+..+..|.|+||.+...++. +..++- .|..+.+|+++....+...
T Consensus 138 ~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~--~~~i~~-------ldl~~~~P~lf~~~~~~~~ 207 (503)
T KOG0513|consen 138 LALRILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL--LVVIPC-------LDLKSLTPNLFSIYDALGT 207 (503)
T ss_pred cceeeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc--ceEEEe-------eccCcCCceeeeeeccccc
Confidence 356776666677777666666666666666888888888777666 222222 2333466776665544333
No 268
>PTZ00073 60S ribosomal protein L37; Provisional
Probab=26.66 E-value=46 Score=23.65 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=9.0
Q ss_pred cccccce-------ecCCCCC
Q 022927 24 CRCCGRT-------LCHEHSS 37 (290)
Q Consensus 24 Cr~cg~v-------~C~~c~~ 37 (290)
||.||.. .|..|.-
T Consensus 19 CrRCG~~syH~qK~~CasCGy 39 (91)
T PTZ00073 19 CRRCGKRSFHVQKKRCASCGY 39 (91)
T ss_pred hcccCccccccccccchhcCC
Confidence 7888765 4555544
No 269
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=26.66 E-value=34 Score=17.91 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=5.2
Q ss_pred cccccccee
Q 022927 23 HCRCCGRTL 31 (290)
Q Consensus 23 hCr~cg~v~ 31 (290)
.|..||+-|
T Consensus 4 ~C~~CgR~F 12 (25)
T PF13913_consen 4 PCPICGRKF 12 (25)
T ss_pred cCCCCCCEE
Confidence 466666654
No 270
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=26.56 E-value=29 Score=29.52 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=27.8
Q ss_pred cccccc-------eecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927 24 CRCCGR-------TLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63 (290)
Q Consensus 24 Cr~cg~-------v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~ 63 (290)
|-.||. -+|..|--....+-...-...+.+|..|-.....
T Consensus 1 C~~CG~~~~~~~~~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~~~ 47 (236)
T PF04981_consen 1 CPRCGREIEPLIDGLCPDCYLKRFDIIEIPDRIEVTICPKCGRYRIG 47 (236)
T ss_pred CCCCCCCCCCcccccChHHhcccCCeeecCCccCceECCCCCCEECC
Confidence 556665 3888998777766543323578899999877754
No 271
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=25.88 E-value=35 Score=22.43 Aligned_cols=7 Identities=71% Similarity=1.735 Sum_probs=5.5
Q ss_pred cccccce
Q 022927 24 CRCCGRT 30 (290)
Q Consensus 24 Cr~cg~v 30 (290)
||.||..
T Consensus 20 CrRCG~~ 26 (62)
T PRK04179 20 CRRCGRH 26 (62)
T ss_pred hcccCcc
Confidence 8888875
No 272
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.77 E-value=24 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.6
Q ss_pred ccccCCCCC--ccccccccccccceecCCCCCCcc
Q 022927 8 NLRLISHIR--SNLLQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 8 ~~~c~~~f~--~~~rrhhCr~cg~v~C~~c~~~~~ 40 (290)
|-+|+..+. ++.|---|+.+|.-||..|-.+-.
T Consensus 343 CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~ 377 (580)
T KOG1829|consen 343 CAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDK 377 (580)
T ss_pred ecccCCCcccccccchhHhhhhhhhhCchhcccCc
Confidence 788999998 555656699999999999976553
No 273
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=25.76 E-value=26 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.7
Q ss_pred ccccccccceec
Q 022927 21 QHHCRCCGRTLC 32 (290)
Q Consensus 21 rhhCr~cg~v~C 32 (290)
-|.|-+||.+|=
T Consensus 2 pH~CtrCG~vf~ 13 (112)
T COG3364 2 PHQCTRCGEVFD 13 (112)
T ss_pred Cceecccccccc
Confidence 388999999873
No 274
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=25.41 E-value=24 Score=26.42 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.2
Q ss_pred ccccccchhhhc
Q 022927 51 VRVCADCFNSSS 62 (290)
Q Consensus 51 ~rvC~~C~~~~~ 62 (290)
.|||.+||..+.
T Consensus 83 ~RvC~DCH~~~K 94 (116)
T PF14432_consen 83 KRVCGDCHSFIK 94 (116)
T ss_pred CccchHHHHHHH
Confidence 399999998774
No 275
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=25.37 E-value=44 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.1
Q ss_pred cccccccccccceecCC
Q 022927 18 NLLQHHCRCCGRTLCHE 34 (290)
Q Consensus 18 ~~rrhhCr~cg~v~C~~ 34 (290)
..+..-|-.||.++|+.
T Consensus 8 ~~~lw~CL~Cg~~~C~~ 24 (63)
T PF02148_consen 8 NSNLWLCLTCGYVGCGR 24 (63)
T ss_dssp SSSEEEETTTS-EEETT
T ss_pred CCceEEeCCCCcccccC
Confidence 35667799999999996
No 276
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=24.78 E-value=36 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=31.6
Q ss_pred ccccccceecCCCCCCc-ccccCC----CCCCcccccccchhhhccc
Q 022927 23 HCRCCGRTLCHEHSSDQ-MTLPQF----GIHTNVRVCADCFNSSSRT 64 (290)
Q Consensus 23 hCr~cg~v~C~~c~~~~-~~~~~~----~~~~~~rvC~~C~~~~~~~ 64 (290)
.|...|+.||..|-.+. ..||.. .-.++-.||+..+..|...
T Consensus 2 ~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~ 48 (202)
T PF13901_consen 2 FCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQI 48 (202)
T ss_pred ccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHh
Confidence 58899999999998773 556651 1146788999999998643
No 277
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.28 E-value=49 Score=33.24 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=7.3
Q ss_pred HHHHHHHcCCHH
Q 022927 195 GLRDAIKNGDAA 206 (290)
Q Consensus 195 ~Lh~A~~~g~~~ 206 (290)
+...++..++.+
T Consensus 606 p~i~~~~~~dy~ 617 (730)
T COG1198 606 PAIQALKRGDYE 617 (730)
T ss_pred HHHHHHHhcCHH
Confidence 566666666655
No 278
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.79 E-value=27 Score=21.07 Aligned_cols=15 Identities=0% Similarity=-0.525 Sum_probs=11.7
Q ss_pred ccccccCCCCCcccc
Q 022927 6 LQNLRLISHIRSNLL 20 (290)
Q Consensus 6 ~~~~~c~~~f~~~~r 20 (290)
+.|..|+.+|++-++
T Consensus 9 K~C~~C~rpf~WRKK 23 (42)
T PF10013_consen 9 KICPVCGRPFTWRKK 23 (42)
T ss_pred CcCcccCCcchHHHH
Confidence 568889999987654
No 279
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.74 E-value=98 Score=31.22 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.6
Q ss_pred Chhhhh
Q 022927 260 SPLDCA 265 (290)
Q Consensus 260 TpL~~A 265 (290)
|-||+-
T Consensus 862 TLLHfL 867 (1102)
T KOG1924|consen 862 TLLHFL 867 (1102)
T ss_pred HHHHHH
Confidence 444433
No 280
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=23.72 E-value=34 Score=26.83 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=4.0
Q ss_pred HHHHHHcC
Q 022927 196 LRDAIKNG 203 (290)
Q Consensus 196 Lh~A~~~g 203 (290)
|..|+.+-
T Consensus 70 l~~Ac~KR 77 (147)
T TIGR00244 70 MVRACEKR 77 (147)
T ss_pred HHHHhcCC
Confidence 45555543
No 281
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=23.71 E-value=34 Score=30.48 Aligned_cols=11 Identities=45% Similarity=1.044 Sum_probs=6.4
Q ss_pred ccccccccccc
Q 022927 19 LLQHHCRCCGR 29 (290)
Q Consensus 19 ~rrhhCr~cg~ 29 (290)
-|-|||+.|++
T Consensus 121 ~RS~HC~~Cn~ 131 (309)
T COG5273 121 PRSHHCSICNR 131 (309)
T ss_pred CCCccchhhcc
Confidence 35666666654
No 282
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=23.63 E-value=32 Score=26.38 Aligned_cols=11 Identities=45% Similarity=1.135 Sum_probs=9.4
Q ss_pred cccccccceec
Q 022927 22 HHCRCCGRTLC 32 (290)
Q Consensus 22 hhCr~cg~v~C 32 (290)
|.|-+||++|=
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 88999999873
No 283
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=23.60 E-value=37 Score=26.36 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.7
Q ss_pred cccccccccceecCCCCCCcc
Q 022927 20 LQHHCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 20 rrhhCr~cg~v~C~~c~~~~~ 40 (290)
|+..|..|--.||.+|.+...
T Consensus 130 ~~g~C~rCEILfCkKC~tLHs 150 (173)
T PF15470_consen 130 RRGGCARCEILFCKKCRTLHS 150 (173)
T ss_pred CCCCccceeeeeehhhccccC
Confidence 567899999999999987653
No 284
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=23.44 E-value=40 Score=22.20 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=6.0
Q ss_pred cccccccee
Q 022927 23 HCRCCGRTL 31 (290)
Q Consensus 23 hCr~cg~v~ 31 (290)
-||.|..|.
T Consensus 5 AC~~C~~i~ 13 (61)
T PRK08351 5 ACRHCHYIT 13 (61)
T ss_pred hhhhCCccc
Confidence 477777665
No 285
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.41 E-value=47 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=6.0
Q ss_pred HHHHHHHcCCHH
Q 022927 195 GLRDAIKNGDAA 206 (290)
Q Consensus 195 ~Lh~A~~~g~~~ 206 (290)
++..+...++++
T Consensus 541 ~~~~~l~~~d~~ 552 (665)
T PRK14873 541 PTVQALIRWDPV 552 (665)
T ss_pred HHHHHHHhCCHH
Confidence 455555555543
No 286
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=23.21 E-value=38 Score=22.51 Aligned_cols=15 Identities=33% Similarity=0.855 Sum_probs=9.7
Q ss_pred cccccccee----cCCCCC
Q 022927 23 HCRCCGRTL----CHEHSS 37 (290)
Q Consensus 23 hCr~cg~v~----C~~c~~ 37 (290)
-||.|.+|. |..|.+
T Consensus 7 AC~~C~~i~~~~~Cp~Cgs 25 (64)
T PRK06393 7 ACKKCKRLTPEKTCPVHGD 25 (64)
T ss_pred hHhhCCcccCCCcCCCCCC
Confidence 488888775 555544
No 287
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=23.13 E-value=12 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=12.7
Q ss_pred ccccccceecCCCCCCcc
Q 022927 23 HCRCCGRTLCHEHSSDQM 40 (290)
Q Consensus 23 hCr~cg~v~C~~c~~~~~ 40 (290)
.-..||.+||..|...+.
T Consensus 12 ~~~~C~H~~c~~C~~~~~ 29 (39)
T smart00184 12 VVLPCGHTFCRSCIRKWL 29 (39)
T ss_pred EEecCCChHHHHHHHHHH
Confidence 334689999988876553
No 288
>PHA00732 hypothetical protein
Probab=22.39 E-value=74 Score=22.06 Aligned_cols=10 Identities=0% Similarity=-0.552 Sum_probs=6.9
Q ss_pred cccccCCCCC
Q 022927 7 QNLRLISHIR 16 (290)
Q Consensus 7 ~~~~c~~~f~ 16 (290)
+|-.|+..|.
T Consensus 3 ~C~~Cgk~F~ 12 (79)
T PHA00732 3 KCPICGFTTV 12 (79)
T ss_pred cCCCCCCccC
Confidence 3667777776
No 289
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.38 E-value=44 Score=16.24 Aligned_cols=8 Identities=38% Similarity=1.406 Sum_probs=2.8
Q ss_pred ccccccee
Q 022927 24 CRCCGRTL 31 (290)
Q Consensus 24 Cr~cg~v~ 31 (290)
|..||..|
T Consensus 3 C~~C~~~~ 10 (24)
T PF13894_consen 3 CPICGKSF 10 (24)
T ss_dssp -SSTS-EE
T ss_pred CcCCCCcC
Confidence 44555443
No 290
>PF15474 MU117: Meiotically up-regulated gene family
Probab=22.38 E-value=39 Score=24.55 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=13.3
Q ss_pred cccccccccccce-ecCCC
Q 022927 18 NLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 18 ~~rrhhCr~cg~v-~C~~c 35 (290)
++|.++|+.||.+ |.+.|
T Consensus 69 i~~~~~c~~CGs~~~~n~C 87 (97)
T PF15474_consen 69 IYRNGGCKRCGSKHFNNGC 87 (97)
T ss_pred HHhcCCCcccCCEEeCCCe
Confidence 4488999999988 44434
No 291
>PRK08197 threonine synthase; Validated
Probab=22.34 E-value=53 Score=30.26 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=16.9
Q ss_pred cccccccCCCCCccccccccccccce
Q 022927 5 DLQNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 5 ~~~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
...|..|++.|..-.....| .||..
T Consensus 7 ~~~C~~Cg~~~~~~~~~~~C-~cg~~ 31 (394)
T PRK08197 7 HLECSKCGETYDADQVHNLC-KCGKP 31 (394)
T ss_pred EEEECCCCCCCCCCCcceec-CCCCe
Confidence 35678888888766555667 67643
No 292
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.23 E-value=40 Score=22.03 Aligned_cols=9 Identities=44% Similarity=1.449 Sum_probs=7.3
Q ss_pred ccccccccc
Q 022927 21 QHHCRCCGR 29 (290)
Q Consensus 21 rhhCr~cg~ 29 (290)
..||..||.
T Consensus 3 HkHC~~CG~ 11 (59)
T PF09889_consen 3 HKHCPVCGK 11 (59)
T ss_pred CCcCCcCCC
Confidence 468999985
No 293
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.18 E-value=53 Score=32.52 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=9.6
Q ss_pred cccccCCCCCccccccccccccce
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
-|-.|+.++.. ..|..||..
T Consensus 17 FC~~CG~~l~~----~~Cp~CG~~ 36 (645)
T PRK14559 17 FCQKCGTSLTH----KPCPQCGTE 36 (645)
T ss_pred cccccCCCCCC----CcCCCCCCC
Confidence 35555555532 135555544
No 294
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.18 E-value=36 Score=30.86 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=10.6
Q ss_pred Cccccccccccccc
Q 022927 16 RSNLLQHHCRCCGR 29 (290)
Q Consensus 16 ~~~~rrhhCr~cg~ 29 (290)
..-++|.+|++||.
T Consensus 34 ~~~~gk~~C~RC~~ 47 (441)
T COG4098 34 IIENGKYRCNRCGN 47 (441)
T ss_pred ecccCcEEehhcCC
Confidence 35678889998884
No 295
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.00 E-value=69 Score=16.81 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=4.2
Q ss_pred ccccccc
Q 022927 22 HHCRCCG 28 (290)
Q Consensus 22 hhCr~cg 28 (290)
+.|-+||
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 4566665
No 296
>PF12591 DUF3762: Protein of unknown function (DUF3762); InterPro: IPR022239 This domain family is found in viruses, and is approximately 80 amino acids in length. The family is found in association with PF05533 from PFAM.
Probab=21.83 E-value=33 Score=22.96 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=7.9
Q ss_pred cccccccceec
Q 022927 22 HHCRCCGRTLC 32 (290)
Q Consensus 22 hhCr~cg~v~C 32 (290)
--=|+||+||=
T Consensus 67 vsprkcgrvfp 77 (80)
T PF12591_consen 67 VSPRKCGRVFP 77 (80)
T ss_pred cCcccccccCC
Confidence 34578999873
No 297
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=21.77 E-value=21 Score=24.49 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.1
Q ss_pred CCcccccccchhhhc
Q 022927 48 HTNVRVCADCFNSSS 62 (290)
Q Consensus 48 ~~~~rvC~~C~~~~~ 62 (290)
.+-.|||+.||+...
T Consensus 17 ~kldrVC~DCyNl~R 31 (73)
T PF01147_consen 17 KKLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 356799999999874
No 298
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=21.72 E-value=28 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=9.5
Q ss_pred ccccccccccc
Q 022927 19 LLQHHCRCCGR 29 (290)
Q Consensus 19 ~rrhhCr~cg~ 29 (290)
-|-|||+.|++
T Consensus 114 prTHHCsiC~k 124 (309)
T KOG1313|consen 114 PRTHHCSICNK 124 (309)
T ss_pred CCcchhhHHhh
Confidence 48899999986
No 299
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=21.60 E-value=42 Score=19.52 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=5.3
Q ss_pred cccccccccee
Q 022927 21 QHHCRCCGRTL 31 (290)
Q Consensus 21 rhhCr~cg~v~ 31 (290)
-+.|..||.|+
T Consensus 6 ~YkC~~CGniV 16 (36)
T PF06397_consen 6 FYKCEHCGNIV 16 (36)
T ss_dssp EEE-TTT--EE
T ss_pred EEEccCCCCEE
Confidence 35688888774
No 300
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=21.52 E-value=51 Score=20.57 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=16.4
Q ss_pred cccccCCCCCccccccccccccce-ecCCC
Q 022927 7 QNLRLISHIRSNLLQHHCRCCGRT-LCHEH 35 (290)
Q Consensus 7 ~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c 35 (290)
.|-+|++.+ ...|+.|-.|... +|..|
T Consensus 2 ~CdgC~~~~--~~~RykCl~C~d~DlC~~C 29 (48)
T cd02343 2 SCDGCDEIA--PWHRYRCLQCTDMDLCKTC 29 (48)
T ss_pred CCCCCCCcC--CCceEECCCCCCchhHHHH
Confidence 477888753 3457877777543 44444
No 301
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=21.15 E-value=36 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=16.4
Q ss_pred ccccCCCCCccccccccccccce-ecCCCCC
Q 022927 8 NLRLISHIRSNLLQHHCRCCGRT-LCHEHSS 37 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhCr~cg~v-~C~~c~~ 37 (290)
|-.|.. +...|.||..|... .|..|-.
T Consensus 3 C~~C~~---~~~~r~~C~~C~dfDLC~~C~~ 30 (41)
T cd02337 3 CNECKH---HVETRWHCTVCEDYDLCITCYN 30 (41)
T ss_pred CCCCCC---cCCCceECCCCcchhhHHHHhC
Confidence 455655 23478888888644 5555543
No 302
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=21.10 E-value=40 Score=31.38 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=23.9
Q ss_pred CCcccccccccCCCCCccccccccccccce
Q 022927 1 MTHHDLQNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 1 ~~~~~~~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
|...-.-|..|+..|.--.+.+.|+.||..
T Consensus 1 m~~~~~rc~~cg~~f~~a~~~~~c~~cGl~ 30 (411)
T COG0498 1 MKYVSLRCLKCGREFSQALLQGLCPDCGLF 30 (411)
T ss_pred CceeEeecCCCCcchhhHHhhCcCCcCCcc
Confidence 344556799999999967779999999964
No 303
>PRK07591 threonine synthase; Validated
Probab=20.91 E-value=61 Score=30.25 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=14.1
Q ss_pred ccccccCCCCCccccccccccccce
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
+.|..|++.|..-.. .-|..||..
T Consensus 19 l~C~~Cg~~~~~~~~-~~C~~cg~~ 42 (421)
T PRK07591 19 LKCRECGAEYPLGPI-HVCEECFGP 42 (421)
T ss_pred EEeCCCCCcCCCCCC-ccCCCCCCe
Confidence 456667666665433 556666543
No 304
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=20.90 E-value=29 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=14.0
Q ss_pred ccccccceecCCCCCCccc
Q 022927 23 HCRCCGRTLCHEHSSDQMT 41 (290)
Q Consensus 23 hCr~cg~v~C~~c~~~~~~ 41 (290)
.=..||..||..|......
T Consensus 13 ~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 13 ILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp EETTTSEEEEHHHHHHHHH
T ss_pred EEecCCCcchHHHHHHHHH
Confidence 4567899999888766554
No 305
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=20.90 E-value=58 Score=23.61 Aligned_cols=10 Identities=40% Similarity=0.746 Sum_probs=5.2
Q ss_pred ccccccchhh
Q 022927 51 VRVCADCFNS 60 (290)
Q Consensus 51 ~rvC~~C~~~ 60 (290)
..+|..|-..
T Consensus 16 ~~~C~~C~~~ 25 (104)
T TIGR01384 16 VYVCPSCGYE 25 (104)
T ss_pred eEECcCCCCc
Confidence 3456666544
No 306
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.59 E-value=80 Score=32.79 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=27.0
Q ss_pred ccccccCCCCCccccccccccccce-----ecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 62 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~ 62 (290)
..|-.|+.... ...|..||.. ||..|.... ..-.|..|-..+.
T Consensus 627 RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~CG~~~----------~~y~CPKCG~El~ 674 (1121)
T PRK04023 627 RKCPSCGKETF----YRRCPFCGTHTEPVYRCPRCGIEV----------EEDECEKCGREPT 674 (1121)
T ss_pred ccCCCCCCcCC----cccCCCCCCCCCcceeCccccCcC----------CCCcCCCCCCCCC
Confidence 35778888742 2578899854 888883321 1134888876654
No 307
>PRK08329 threonine synthase; Validated
Probab=20.40 E-value=65 Score=29.14 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=15.1
Q ss_pred ccccccCCCCCccccccccccccce
Q 022927 6 LQNLRLISHIRSNLLQHHCRCCGRT 30 (290)
Q Consensus 6 ~~~~~c~~~f~~~~rrhhCr~cg~v 30 (290)
..|..|++.|..-.. +.| .||..
T Consensus 2 l~C~~Cg~~~~~~~~-~~C-~c~~~ 24 (347)
T PRK08329 2 LRCTKCGRTYEEKFK-LRC-DCGGT 24 (347)
T ss_pred cCcCCCCCCcCCCCc-eec-CCCCc
Confidence 468888888874333 677 57643
No 308
>PLN02569 threonine synthase
Probab=20.14 E-value=66 Score=30.68 Aligned_cols=17 Identities=0% Similarity=-0.312 Sum_probs=6.9
Q ss_pred ccccCCCCCcccccccc
Q 022927 8 NLRLISHIRSNLLQHHC 24 (290)
Q Consensus 8 ~~~c~~~f~~~~rrhhC 24 (290)
|..|++.|.+-....-|
T Consensus 52 C~~Cg~~y~~~~~~~~C 68 (484)
T PLN02569 52 CPLTGEKYSLDEVVYRS 68 (484)
T ss_pred eCCCCCcCCCccccccC
Confidence 44444444433333334
Done!