BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022929
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212
+IV+GD ++P +YAD VS GS+ +W D RE YR+LK GGK I G
Sbjct: 95 IQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG 148
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL 220
+++G AE+LP + D + +I + DP+R ++EAYR+LK GG I+G V +L
Sbjct: 88 VLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG-YLIVGIVDRESFL 146
Query: 221 SRYFA-----DVW---MLFPKEEEYIEWFQKAGFKDVQL 251
R + V+ F EE + +KAGF++ ++
Sbjct: 147 GREYEKNKEKSVFYKNARFFSTEELXDLXRKAGFEEFKV 185
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 140 LDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAY 199
+D S + K K++ + ++GD LPF + + + S+E+ +P R + E
Sbjct: 81 VDISEVXIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNEIK 140
Query: 200 RVLKLGGKAC--IIGPV 214
RVLK G AC I+GP
Sbjct: 141 RVLKSDGYACIAILGPT 157
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211
Q++ ++ + +G AE LPFP D D + ++ D ++ +RE RVLK G+ ++
Sbjct: 64 QEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 123
Query: 212 GPVYP 216
P
Sbjct: 124 DHYAP 128
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
++ + V+GDAE PF + + ++P+P + EAYRVLK GG+ ++ P
Sbjct: 85 QQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 144
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 137 VTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 193
+T +D SP L KA++ K +K K ++ + LPF D +E+ P+
Sbjct: 64 ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE 123
Query: 194 GIREAYRVLKLGGKACII 211
++ +VLK GG +I
Sbjct: 124 ALKSLKKVLKPGGTITVI 141
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
DA DLPF D + S+ + PD R +RE RVL+ GG I
Sbjct: 119 DAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAI-------------- 164
Query: 225 ADVWMLFPKE---EEYIEWFQKAG 245
AD +L P E +E ++ F+ G
Sbjct: 165 ADFVLLAPVEGAKKEAVDAFRAGG 188
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 106 DLSNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKE-CKI 161
+L+N++ L+ D+ + +HV K +T +D P + K +K L+ K
Sbjct: 44 NLTNKS-LIADLGCGTGGQTMILAQHVPGK-ITGIDFFPGFIERFNKNAEKLNLQNRVKG 101
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---- 217
+ G +DL F D D S G+I Y +RG++E LK GG + V+ T
Sbjct: 102 IVGSMDDLSFEKDSLDLIWSEGAI-YNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRP 160
Query: 218 -----FWLSRY 223
FW+S Y
Sbjct: 161 AEIHDFWMSAY 171
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 106 DLSNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKE-CKI 161
+L+N++ L+ D+ + +HV K +T +D P + K +K L+ K
Sbjct: 49 NLTNKS-LIADLGCGTGGQTMILAQHVPGK-ITGIDFFPGFIERFNKNAEKLNLQNRVKG 106
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---- 217
+ G +DL F D D S G+I Y +RG++E LK GG + V+ T
Sbjct: 107 IVGSMDDLSFEKDSLDLIWSEGAI-YNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRP 165
Query: 218 -----FWLSRY 223
FW+S Y
Sbjct: 166 AEIHDFWMSAY 176
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 140 LDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAY 199
++ S LA +++ P E V E LPFP + D + ++E+ D +R + EA
Sbjct: 62 VEPSEAXLAVGRRRAP--EATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEAR 119
Query: 200 RVLKLGGKACIIG 212
RVL+ GG A ++G
Sbjct: 120 RVLRPGG-ALVVG 131
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 143 SPHQLAKAKQ--KEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIREA 198
S QL KA+ +E + I +GD LPF + S G+I + D + I E
Sbjct: 55 SDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEI 114
Query: 199 YRVLKLGGKACI 210
RVLK GG ACI
Sbjct: 115 KRVLKPGGLACI 126
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 136 NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI-EYWPDPQRG 194
V ++D S L A++K +VE AEDLPFP+ + ++ G + Y + +
Sbjct: 78 EVVLVDPSKEXLEVAREKGV---KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKA 134
Query: 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
E RVL G + TF D W
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQQXIEKDAW 168
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 134 AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 193
A V LD S LA+A+ P D + L P D D S+ ++ Y D R
Sbjct: 66 ASYVLGLDLSEKXLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVAR 125
Query: 194 GIREAYRVLKLGG 206
R ++ L GG
Sbjct: 126 LFRTVHQALSPGG 138
>pdb|3CFZ|A Chain A, Crystal Structure Of M. Jannaschii Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 292
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 190 DPQRGIREAYRVLKLGGKACIIGP----VYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245
+P + +++ LG KA I+ + P + +Y AD +++F + E + + K+
Sbjct: 38 EPAGSVACVRKIIDLGKKADILASADYSLIPQMMMPKY-ADWYVMFARNEIVLAYTDKSK 96
Query: 246 FKDVQLKRIGPKWYRGVRRHGLIMGCS 272
+KD + WY+ ++R + +G S
Sbjct: 97 YKD---EINSTNWYKILQRPDVKIGFS 120
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 34/142 (23%)
Query: 138 TILDQSPHQL--AKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG- 194
T++D S L AK + + LK K +E D F Y D VSA SI + D +
Sbjct: 72 TLVDMSEKMLEIAKNRFRGNLK-VKYIEADYSKYDFEEKY-DMVVSALSIHHLEDEDKKE 129
Query: 195 -IREAYRVLK----------LGGKACIIGPVYPTFWLSRYFADVWMLFPKE--------- 234
+ +Y +LK + G+ I + T W R + + L +E
Sbjct: 130 LYKRSYSILKESGIFINADLVHGETAFIENLNKTIW--RQYVENSGLTEEEIAAGYERSK 187
Query: 235 -------EEYIEWFQKAGFKDV 249
+ + W ++AGF+DV
Sbjct: 188 LDKDIEMNQQLNWLKEAGFRDV 209
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 101 ALEPADLSNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQL----AKAKQKEPL 156
AL D L+ D+ + HV + VT LD + A+Q
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVTGQ-VTGLDFLSGFIDIFNRNARQSGLQ 95
Query: 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG 206
+ G +DLPF + D S G+I Y +RG+ E + LK GG
Sbjct: 96 NRVTGIVGSXDDLPFRNEELDLIWSEGAI-YNIGFERGLNEWRKYLKKGG 144
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG 206
++ ++V+ DA +P P + + PD + + EA RVLK GG
Sbjct: 86 RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGG 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,066
Number of Sequences: 62578
Number of extensions: 369368
Number of successful extensions: 636
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 17
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)