BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022929
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23525|IN37_SPIOL 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 344
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/294 (81%), Positives = 262/294 (89%), Gaps = 7/294 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKH-IPKLSLIAKPRTVQS------IKCS 53
MA SMLNG + LI G TP F SDF G + +P+L+L R +++ KC+
Sbjct: 1 MACSMLNGVDKLALISGKTPNRLRFSGSDFTGSYKLPRLNLPPNSRNLRAKTLTTVTKCT 60
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
LSA+ RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL+NRNML
Sbjct: 61 LSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNML 120
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGI+KHVD KNVTILDQSPHQLAKAK K+PLKEC+I+EGDAEDLPFPT
Sbjct: 121 VVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPT 180
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 181 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 240
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQV 287
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ+
Sbjct: 241 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQL 294
>sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1
Length = 258
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGD 165
N V+DV GGTG IV+ K + T+LD + LA +A++K L + VE +
Sbjct: 71 NYRVLDVAGGTGDIAFRIVEASGRKAHATVLDINGSMLAVGAERARKKGLLGNLEFVEAN 130
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF + D Y A I P + ++EAYRVLK GG+ ++ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 226 DVW 228
D W
Sbjct: 191 DAW 193
>sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3
SV=1
Length = 258
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K T+LD + L+ +A++K + VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAQATVLDINGSMLSVGAERARKKGIEANLEFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + +REAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2
Length = 258
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K + T+LD + L+ +A++K VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAHATVLDINGSMLSVGAERARKKGIEANLDFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + ++EAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
>sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=ubiE PE=3 SV=1
Length = 241
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
>sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1
Length = 241
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
>sp|Q1RJY5|UBIE_RICBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1
Length = 248
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGQIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
>sp|A9ILA7|UBIE_BART1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
GN=ubiE PE=3 SV=1
Length = 260
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE------PLKECKIVEGDA 166
V+DV GGTG I+K K + T+LD + L+ KQ+ PL VE +A
Sbjct: 76 VLDVAGGTGDIAFRILKASRQKAHATVLDINGSMLSVGKQRAQKNGLAPL--IDFVEANA 133
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFA 225
E LPF D Y A I P + +REA+RVLK GG+ C+ WL + +
Sbjct: 134 EHLPFEDQSFDAYTIAFGIRNVPHIDQALREAFRVLKPGGRFLCLEFSNVEMPWLDKIY- 192
Query: 226 DVWML--------------------------FPKEEEYIEWFQKAGFKDVQLKRI 254
D+W FPK+ ++ ++AGF V + +
Sbjct: 193 DLWSFHAIPKLGQFIANDGDAYRYLVESIRKFPKQNDFAHMIKQAGFSRVSYRNL 247
>sp|A8GXR2|UBIE_RICB8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3
SV=1
Length = 248
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGKIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
>sp|A8F2G9|UBIE_RICM5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia massiliae (strain Mtu5) GN=ubiE PE=3 SV=1
Length = 248
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIVGNKEAYEYLVESIELFPSQDEFRIMIKDAGFEEVGYKNL 235
>sp|P46326|YXBB_BACSU Uncharacterized protein YxbB OS=Bacillus subtilis (strain 168)
GN=yxbB PE=3 SV=1
Length = 244
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIVEGD 165
S +N +++D+G G G+ ++ + K +A +V +D +P H++A+ + K+ ++ D
Sbjct: 34 SPKNKVIIDMGTGPGYLSIQLAKRTNA-HVHAVDINPAMHEIAQEEAKKS-GVSSLISFD 91
Query: 166 AED---LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
ED L + YAD VS + +W D +G++E YRVL GGK I+ P
Sbjct: 92 LEDVHHLSYADQYADFIVSYSCLHHWEDVVKGLKECYRVLAPGGKIVILDTFNP 145
>sp|A8GT99|UBIE_RICRS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia rickettsii (strain Sheila Smith) GN=ubiE
PE=3 SV=1
Length = 248
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNL 235
>sp|B0BUT9|UBIE_RICRO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia rickettsii (strain Iowa) GN=ubiE PE=3 SV=1
Length = 248
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNL 235
>sp|Q92GT5|UBIE_RICCN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=ubiE PE=3 SV=1
Length = 248
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNL 235
>sp|C3PLF4|UBIE_RICAE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia africae (strain ESF-5) GN=ubiE PE=3 SV=1
Length = 248
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK GK C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNL 235
>sp|Q68W57|UBIE_RICTY Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=ubiE PE=3 SV=1
Length = 248
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK--NVTIL--DQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K A+ N++++ D + L AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALQLAKKAKARGNNISLILSDINEEMLNNAKKKSIDLNLFQNMK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKAC---------I 210
+ +AE+LPF + D Y A I PD + ++EAYRVLK +G C I
Sbjct: 116 FIVANAEELPFLDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKEGI 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++++ + +GF++V K +
Sbjct: 176 LKDFYKFYSFTIIPSIGQIIARNKEAYEYLVESIALFPSQDDFRIMIKASGFEEVHYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
>sp|P96576|YDAC_BACSU Uncharacterized methyltransferase YdaC OS=Bacillus subtilis (strain
168) GN=ydaC PE=3 SV=1
Length = 181
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+++VG G G+ ++K ++ +D S L A ++ K ++++G E P P
Sbjct: 30 ILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQGSIETFPLPA 89
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
+ D+ +S + W D +GI++ YR LK GGKA I + AD K
Sbjct: 90 SFYDKVISVNNYTIWNDQTKGIKQIYRALKPGGKAAIT--------MQPREADASPEKTK 141
Query: 234 E--EEYIEWFQKAGFK--DVQLKRIGPK 257
+ I F+ AGF+ D+Q K I P+
Sbjct: 142 SFGRQMIADFKAAGFEDIDIQFKNIKPE 169
>sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=ubiE PE=3 SV=1
Length = 269
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 2 (strain ATCC 23457)
GN=ubiE PE=3 SV=1
Length = 269
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3
SV=1
Length = 269
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1
Length = 269
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|B2SC50|UBIE_BRUA1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain S19) GN=ubiE PE=3 SV=1
Length = 269
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q6G1I2|UBIE_BARQU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella quintana (strain Toulouse) GN=ubiE PE=3
SV=1
Length = 260
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 37/186 (19%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE------ 154
L P LSN V+DV GGTG I+ K + T+LD + L+ K++
Sbjct: 66 LSPPALSNWK--VLDVAGGTGDIAFRILNASRKKAHATVLDINSSMLSVGKKRAQKNGLA 123
Query: 155 PLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---- 209
PL + VE +AE LPF D Y A I P + +REA+RVLK GG+ C
Sbjct: 124 PLTD--FVEANAEHLPFEDQSFDAYTIAFGIRNVPHINQALREAFRVLKPGGRFLCLEFS 181
Query: 210 -----IIGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKD 248
++ +Y + RY + FPK++++ AGF
Sbjct: 182 NVEMPLLNKIYDLWSFHVIPKLGQFIADNGDAYRYLVESIRKFPKQDDFSHMLNHAGFSR 241
Query: 249 VQLKRI 254
V + +
Sbjct: 242 VSYRNL 247
>sp|B3QLI9|UBIE_CHLP8 Demethylmenaquinone methyltransferase OS=Chlorobaculum parvum
(strain NCIB 8327) GN=ubiE PE=3 SV=1
Length = 241
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
++DV GTG + K AK VT D SP LA A++K P + EG AE +PF
Sbjct: 66 ILDVATGTGDLAASMAKIPGAK-VTGYDLSPEMLAIARKKYP--NIEFHEGFAEKMPF-A 121
Query: 174 DYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-----YFADV 227
D + VSAG + + D +G++E +RVLK GG A II P+ P + + YF +V
Sbjct: 122 DQSFHVVSAGFGVRNFEDLAQGMKEFHRVLKPGGCAYIIEPMIPRNPVMKKLYLIYFKNV 181
Query: 228 W---------------------MLFPKEEEYIEWFQKAGFKDVQL 251
FP+ E + + ++AGFK +
Sbjct: 182 LPKIAGMFSKSTFAYDYLPNSVEQFPQAEAFTKILKQAGFKKAEF 226
>sp|Q9ZCP3|UBIE_RICPR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia prowazekii (strain Madrid E) GN=ubiE PE=3
SV=2
Length = 248
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK--NVTIL--DQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + N++++ D + L AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGNNISLILSDINEEMLNNAKKKSIDLNLFQNIK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKAC---------I 210
+ +AE+LPF + D Y A I PD + ++EAYRVLK +G C I
Sbjct: 116 FIVANAEELPFSDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFVCLEFSKVKEGI 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++++ +++GF++V K +
Sbjct: 176 LKDFYKFYSFNIIPSIGQIIAGNKEAYEYLVESIALFPSQDDFRIMIKESGFEEVHYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
>sp|Q8FUZ3|UBIE_BRUSU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella suis biovar 1 (strain 1330) GN=ubiE PE=3
SV=1
Length = 269
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEVSGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=ubiE PE=3 SV=1
Length = 269
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 33/170 (19%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAEDL 169
+DV GGTG IV+ + +VTILD + L +A +K + + VE +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEVSGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-AC---------IIGPVYPTFW 219
PF + D Y A I P + + EAYRVLK GG+ C ++ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 220 LSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
R Y + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=ubiE PE=3 SV=1
Length = 241
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECKIVEGDAE 167
+ M +DV GTG T+ + K V + VT +D S + L K+K ++ K+V GDA
Sbjct: 49 KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAM 108
Query: 168 DLPFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLS 221
+LPF + D YV+ G + PD ++E RVLK GG + P P F +
Sbjct: 109 ELPFEDNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYA 167
Query: 222 RYFADVW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
YF V LF K +E EW Q++ F +LKR+
Sbjct: 168 LYFKFVMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|Q4UMW4|UBIE_RICFE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=ubiE PE=3 SV=1
Length = 248
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKN---VTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K D N +T+ D + L AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRGNNIALTLSDINEEMLKNAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKACI--------- 210
AE+LPF + D Y A I PD + ++EAYRVLK +G C+
Sbjct: 116 FTVASAEELPFSDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
Y + S Y + LFP ++E+ ++AGF++V K +
Sbjct: 176 FKDFYKFYSFSIIPTIGQAITGNKEAYEYLVESIELFPSQDEFRIMLKEAGFEEVSYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
>sp|P34666|COQ5_CAEEL 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Caenorhabditis elegans GN=coq-5 PE=3 SV=2
Length = 285
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI-------VE 163
N +D+ GGTG I++H VT+ D + L K++ KE I V
Sbjct: 96 NAKCLDMAGGTGDIAFRILRHSPTAKVTVSDINQPMLDVGKKRAE-KERDIQPSRAEWVC 154
Query: 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI---------IGPV 214
+AE +PF ++ D + + I P++ +REA+RVLK GG+ I + P+
Sbjct: 155 ANAEQMPFESNTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAILEFSEVNSALKPI 214
Query: 215 YPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
Y + + +Y + FP ++E+ ++ GF +V+ + +
Sbjct: 215 YDAYSFNVIPVLGEILASDRASYQYLVESIRKFPNQDEFARIIREEGFSNVRYENL 270
>sp|Q1GC56|UBIE_RUEST Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Ruegeria sp. (strain TM1040) GN=ubiE PE=3 SV=1
Length = 250
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKEC-KIVEGDAEDL 169
++DV GGTG + +K + T+LD + L + +++ E + EC V GDA L
Sbjct: 67 LLDVAGGTGDISFRFLKRAGHGHSTVLDLTTPMLEEGRKRAEAEQMAECLDWVTGDAMAL 126
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI----------IGPVYPTFW 219
PF + D Y + I PQ + EAYRVLK GG+ + + +Y +
Sbjct: 127 PFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDGLQKLYDLYS 186
Query: 220 LS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ +Y + FP +E ++ + AGF++ + + +
Sbjct: 187 FNVIPRMGQMIAGDYDSYQYLVESIRNFPDQETFLGMVKSAGFENAKHRNL 237
>sp|A8GPI0|UBIE_RICAH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia akari (strain Hartford) GN=ubiE PE=3 SV=1
Length = 248
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKN---VTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K D N +T+ D + L AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRGNNIALTLSDINEEMLKNAKKKTIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKACI--------- 210
AE+LP+P + D Y A I PD + ++EAYRVLK +G C+
Sbjct: 116 FTVASAEELPYPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
Y + S Y + LFP ++E+ ++AGF++V K +
Sbjct: 176 FKDFYKFYSFSIIPTIGQVITGNKEAYEYLVESIELFPSQDEFRIMIKEAGFEEVGYKNL 235
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=ubiE PE=3 SV=1
Length = 259
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
++DV GGTG I++ + + T+LD + LA +A +K+ VE +AE+
Sbjct: 75 ILDVAGGTGDVAFRIIEASNRLAHATVLDINGSMLAVGEERAAKKKLSDNLTFVEANAEE 134
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI----------IGPVYPTF 218
LPF + D Y A I P ++EAYRVLK GG+ + + VY +
Sbjct: 135 LPFEANTFDAYTVAFGIRNVPRIDVALKEAYRVLKRGGRLLVLEFSEVDMPLLDRVYDAW 194
Query: 219 WLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDV 249
+ +Y + FP +E++ + AGF V
Sbjct: 195 SFNAIPQFGKMITGDAEPYQYLVESIRKFPNQEDFATMIRTAGFSRV 241
>sp|Q81ZZ8|UBIE_NITEU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=ubiE PE=3 SV=1
Length = 244
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 114 VVDVGGGTG-FTTLGIVKHVDAKNV--TILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP 170
V+D+ GGT T L + K V T ++ S + + + K + + DAE LP
Sbjct: 63 VLDIAGGTADLTRLFLEKTGSTGEVWLTDINNSMLSIGRDRMLNDGKSVPVAQCDAEKLP 122
Query: 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI---------IGPVYPTFWLS 221
FP +Y DR A + +RE +RVL GG + + P+Y T+
Sbjct: 123 FPDNYFDRVCVAFGLRNMTHKDAALREMWRVLSPGGSLIVLEFSKVWKPLQPLYDTYSFK 182
Query: 222 ----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250
RY A+ + P +EE + Q+AGF+ V+
Sbjct: 183 ALPFMGKIVARDDTSYRYLAESIRMHPSQEELKQLMQQAGFERVE 227
>sp|B9J7S8|UBIE_AGRRK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
GN=ubiE PE=3 SV=1
Length = 258
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 31/169 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ + + T+LD + L +A +K+ VE +AE+
Sbjct: 74 VLDVAGGTGDIAFRIVEASNRLAHATVLDINGSMLGVGAERAAKKKLTDNLTFVEANAEE 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI----------IGPVY--- 215
LPF + D Y A I P ++EAYRVLK GG+ + + VY
Sbjct: 134 LPFEPNSFDAYTIAFGIRNVPRIDVALKEAYRVLKRGGRLLVLEFSEVDLPLLDRVYEAW 193
Query: 216 -----PTFWLS--------RYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251
P F + +Y + FP ++++ ++AGF V
Sbjct: 194 SFNAIPQFGKAITGDAEPYQYLVESIRKFPNQQDFATMIREAGFSRVNF 242
>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MW2) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MSSA476) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain N315) GN=ubiE PE=1 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|P67061|UBIE_STAAM Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=ubiE PE=1 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|A6QH20|UBIE_STAAE Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Newman) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|Q5HFV2|UBIE_STAAC Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain COL) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|A5ISZ9|UBIE_STAA9 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH9) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|A6U1T9|UBIE_STAA2 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH1) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|A7X2H6|UBIE_STAA1 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=ubiE PE=3 SV=1
Length = 241
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172
+DV GTG T+ + K V VT +D S + L K+K ++ K+V GDA +LPF
Sbjct: 54 LDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAMELPFE 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACII---GPVYPTF--WLSRYFAD 226
+ D YV+ G + PD ++E RVLK GG + P P F + YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYALYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK---DVQLKRI 254
V LF K +E EW Q++ F +LKR+
Sbjct: 173 VMPIFGKLFAKSKEEYEWLQQSTFNFPGKEELKRM 207
>sp|Q2KDB0|UBIE_RHIEC Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ubiE
PE=3 SV=1
Length = 258
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ + + T+LD + L +A++K+ VE +AE+
Sbjct: 74 VLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKLSGNLTFVEANAEE 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI----------IGPVY--- 215
LPF D Y A I P + + EAYRVLK GG+ + + +Y
Sbjct: 134 LPFEAASFDAYTIAFGIRNVPRIDKALSEAYRVLKRGGRLLVLEFSEVDMPLLDKIYDAW 193
Query: 216 -----PTFWLS--------RYFADVWMLFPKEEEYIEWFQKAGFKDV 249
P F + +Y + FP +E + ++AGF V
Sbjct: 194 SFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
>sp|B8DBZ5|UBIE_LISMH Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=ubiE PE=3 SV=1
Length = 237
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
V+DV GT ++ + + + + +VT LD S + L ++K L +++ G+A +L
Sbjct: 51 VLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVTEADLHNVELIHGNAMEL 110
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PFP + D YV+ G + PD + +RE YRVLK GG+ ACI
Sbjct: 111 PFPDNSFD-YVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAY 169
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQ 250
+ PV+ F+ Y W+ FP E FQ+AGF V+
Sbjct: 170 FRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVR 217
>sp|A0AK43|UBIE_LISW6 Demethylmenaquinone methyltransferase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=ubiE PE=3 SV=1
Length = 236
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
V+DV GT ++ + + + + +VT LD S + L ++K L +++ G+A +L
Sbjct: 51 VLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNAMEL 110
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PFP + D YV+ G + PD + +RE YRVLK GG+ ACI
Sbjct: 111 PFPDNSFD-YVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAY 169
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQ 250
+ PV+ F+ Y W+ FP + E FQ AGF V+
Sbjct: 170 FRYVMPVFGKFFAKSYKEYSWLQESTREFPGMSKLAEMFQDAGFSYVR 217
>sp|P67055|UBIE_LISMO Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ubiE PE=3
SV=1
Length = 237
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
V+DV GT ++ + + + + +VT LD S + L ++K L +++ G+A +L
Sbjct: 51 VLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNAMEL 110
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PFP + D YV+ G + PD + +RE YRVLK GG+ ACI
Sbjct: 111 PFPDNSFD-YVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAY 169
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQ 250
+ PV+ F+ Y W+ FP E FQ+AGF V+
Sbjct: 170 FRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVR 217
>sp|Q71Y84|UBIE_LISMF Demethylmenaquinone methyltransferase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=ubiE PE=3 SV=1
Length = 237
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
V+DV GT ++ + + + + +VT LD S + L ++K L +++ G+A +L
Sbjct: 51 VLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNAMEL 110
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PFP + D YV+ G + PD + +RE YRVLK GG+ ACI
Sbjct: 111 PFPDNSFD-YVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAY 169
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQ 250
+ PV+ F+ Y W+ FP E FQ+AGF V+
Sbjct: 170 FRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVR 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,858,185
Number of Sequences: 539616
Number of extensions: 5237532
Number of successful extensions: 14409
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 13722
Number of HSP's gapped (non-prelim): 777
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)