Query 022929
Match_columns 290
No_of_seqs 262 out of 2992
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02490 MPBQ/MSBQ methyltrans 100.0 1.9E-40 4E-45 292.0 23.9 287 1-288 1-291 (340)
2 COG2226 UbiE Methylase involve 99.9 2E-23 4.3E-28 174.6 20.0 180 74-254 14-225 (238)
3 PLN02233 ubiquinone biosynthes 99.9 1.3E-22 2.9E-27 174.8 21.2 184 71-255 33-250 (261)
4 PF01209 Ubie_methyltran: ubiE 99.9 6.3E-24 1.4E-28 179.2 10.4 179 74-254 10-221 (233)
5 PLN02244 tocopherol O-methyltr 99.9 3.5E-21 7.6E-26 172.0 21.1 189 68-257 56-282 (340)
6 TIGR02752 MenG_heptapren 2-hep 99.9 8.9E-21 1.9E-25 160.9 21.2 181 74-255 8-220 (231)
7 KOG1540 Ubiquinone biosynthesi 99.9 4.5E-20 9.8E-25 151.9 20.5 226 20-250 11-278 (296)
8 PTZ00098 phosphoethanolamine N 99.9 2.3E-20 5E-25 161.0 17.5 160 98-259 41-208 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 1.2E-20 2.7E-25 166.0 14.5 144 110-255 131-291 (322)
10 PRK14103 trans-aconitate 2-met 99.8 1.5E-19 3.2E-24 155.7 17.4 148 100-253 20-184 (255)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.4E-20 7.3E-25 152.6 12.5 145 110-256 59-218 (243)
12 PLN02336 phosphoethanolamine N 99.8 1.2E-19 2.5E-24 169.8 17.7 150 109-259 265-420 (475)
13 PRK00216 ubiE ubiquinone/menaq 99.8 8.1E-19 1.7E-23 149.3 21.4 181 74-256 14-228 (239)
14 PRK15068 tRNA mo(5)U34 methylt 99.8 3.6E-19 7.7E-24 157.6 16.7 193 91-287 103-316 (322)
15 PRK11036 putative S-adenosyl-L 99.8 3.5E-19 7.5E-24 153.3 15.3 143 110-254 44-208 (255)
16 PF13489 Methyltransf_23: Meth 99.8 7.1E-20 1.5E-24 146.3 9.6 133 109-250 21-160 (161)
17 smart00828 PKS_MT Methyltransf 99.8 3.5E-19 7.5E-24 150.4 13.9 150 112-263 1-154 (224)
18 PF08241 Methyltransf_11: Meth 99.8 2E-19 4.4E-24 130.6 9.9 95 115-210 1-95 (95)
19 PRK10258 biotin biosynthesis p 99.8 2.8E-18 6.1E-23 147.4 18.3 149 95-248 28-182 (251)
20 PRK05785 hypothetical protein; 99.8 2.6E-18 5.6E-23 144.9 17.5 170 73-254 11-212 (226)
21 TIGR00452 methyltransferase, p 99.8 1.2E-18 2.7E-23 152.7 15.7 173 87-263 98-283 (314)
22 PRK08317 hypothetical protein; 99.8 3.9E-18 8.5E-23 145.0 18.2 161 94-255 4-178 (241)
23 PF13847 Methyltransf_31: Meth 99.8 4.6E-19 1E-23 140.7 11.7 135 110-245 3-152 (152)
24 PF02353 CMAS: Mycolic acid cy 99.8 7.6E-19 1.6E-23 151.6 12.4 161 97-263 50-227 (273)
25 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 9.6E-18 2.1E-22 141.2 18.6 158 99-257 29-214 (223)
26 PRK11873 arsM arsenite S-adeno 99.8 1.6E-17 3.4E-22 144.5 19.9 146 109-254 76-231 (272)
27 TIGR02072 BioC biotin biosynth 99.8 3.8E-18 8.3E-23 145.1 15.0 142 110-253 34-176 (240)
28 PRK01683 trans-aconitate 2-met 99.8 2.2E-17 4.8E-22 142.4 18.6 148 98-249 20-183 (258)
29 COG2230 Cfa Cyclopropane fatty 99.8 1.2E-17 2.5E-22 142.4 14.9 161 98-263 61-233 (283)
30 PRK15451 tRNA cmo(5)U34 methyl 99.8 8.3E-18 1.8E-22 144.0 13.4 138 110-249 56-226 (247)
31 PF08003 Methyltransf_9: Prote 99.8 7.3E-18 1.6E-22 143.7 12.4 200 87-289 92-310 (315)
32 PRK11207 tellurite resistance 99.8 1.6E-17 3.4E-22 137.4 13.5 135 110-253 30-170 (197)
33 TIGR00740 methyltransferase, p 99.8 2.1E-17 4.5E-22 141.0 14.5 139 110-250 53-224 (239)
34 PRK14966 unknown domain/N5-glu 99.8 1.1E-18 2.5E-23 156.4 6.8 181 53-253 197-405 (423)
35 PF12847 Methyltransf_18: Meth 99.8 5E-18 1.1E-22 127.5 9.1 102 110-212 1-111 (112)
36 PRK01544 bifunctional N5-gluta 99.7 1.3E-18 2.8E-23 162.6 6.0 211 24-252 29-292 (506)
37 KOG1270 Methyltransferases [Co 99.7 1.2E-17 2.6E-22 138.5 10.4 138 111-253 90-249 (282)
38 TIGR00536 hemK_fam HemK family 99.7 2.6E-18 5.5E-23 150.1 6.3 176 58-251 62-267 (284)
39 PRK00107 gidB 16S rRNA methylt 99.7 5.3E-16 1.1E-20 126.6 18.9 124 110-255 45-171 (187)
40 PRK06202 hypothetical protein; 99.7 1.1E-16 2.4E-21 135.9 15.2 143 110-255 60-224 (232)
41 TIGR00477 tehB tellurite resis 99.7 2.9E-17 6.3E-22 135.6 10.1 137 110-254 30-170 (195)
42 PRK05134 bifunctional 3-demeth 99.7 2.4E-16 5.1E-21 134.0 15.1 145 109-255 47-207 (233)
43 PLN02585 magnesium protoporphy 99.7 3.8E-16 8.2E-21 137.2 16.4 144 110-259 144-305 (315)
44 TIGR03533 L3_gln_methyl protei 99.7 1.1E-17 2.3E-22 145.8 6.0 209 25-252 35-273 (284)
45 TIGR02716 C20_methyl_CrtF C-20 99.7 6.2E-16 1.4E-20 136.6 17.3 148 101-252 141-305 (306)
46 TIGR02021 BchM-ChlM magnesium 99.7 4.2E-16 9.1E-21 131.2 14.3 159 97-261 41-214 (219)
47 PRK08287 cobalt-precorrin-6Y C 99.7 2.4E-15 5.3E-20 123.4 17.8 138 95-254 17-157 (187)
48 PRK11705 cyclopropane fatty ac 99.7 3.2E-16 6.9E-21 141.8 13.1 154 101-261 159-320 (383)
49 PRK09328 N5-glutamine S-adenos 99.7 6.8E-17 1.5E-21 140.6 7.5 170 63-251 62-260 (275)
50 TIGR03704 PrmC_rel_meth putati 99.7 6.5E-16 1.4E-20 132.3 13.3 178 57-251 33-238 (251)
51 PRK12335 tellurite resistance 99.7 6.1E-16 1.3E-20 135.3 13.1 136 110-253 120-259 (287)
52 KOG4300 Predicted methyltransf 99.7 4.7E-16 1E-20 124.4 10.9 145 110-256 76-235 (252)
53 TIGR00138 gidB 16S rRNA methyl 99.7 3.4E-15 7.4E-20 121.6 16.3 124 110-255 42-171 (181)
54 PRK11805 N5-glutamine S-adenos 99.7 7.9E-17 1.7E-21 141.7 6.9 210 25-253 47-286 (307)
55 COG4106 Tam Trans-aconitate me 99.7 1.8E-15 4E-20 121.9 13.8 147 100-250 21-183 (257)
56 COG4976 Predicted methyltransf 99.7 8.6E-17 1.9E-21 130.5 6.0 193 76-278 90-286 (287)
57 COG2890 HemK Methylase of poly 99.7 5.9E-16 1.3E-20 134.2 11.6 171 62-253 64-263 (280)
58 KOG2361 Predicted methyltransf 99.7 2E-15 4.3E-20 123.8 13.4 169 84-254 47-238 (264)
59 TIGR01983 UbiG ubiquinone bios 99.7 2.7E-15 5.8E-20 126.6 14.7 144 110-255 45-205 (224)
60 PF08242 Methyltransf_12: Meth 99.7 4.5E-17 9.8E-22 119.6 3.3 94 115-208 1-99 (99)
61 TIGR03534 RF_mod_PrmC protein- 99.7 2.3E-15 4.9E-20 129.2 14.3 168 66-253 45-241 (251)
62 PF07021 MetW: Methionine bios 99.6 4.3E-15 9.4E-20 119.2 13.3 142 109-258 12-172 (193)
63 TIGR02081 metW methionine bios 99.6 7.3E-15 1.6E-19 121.3 15.1 138 110-255 13-169 (194)
64 TIGR03587 Pse_Me-ase pseudamin 99.6 3.9E-15 8.5E-20 123.5 13.0 102 110-216 43-146 (204)
65 smart00138 MeTrc Methyltransfe 99.6 2.3E-15 4.9E-20 129.9 11.4 137 76-212 62-242 (264)
66 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.6E-14 3.4E-19 120.6 15.9 137 110-254 34-188 (213)
67 PRK04266 fibrillarin; Provisio 99.6 2.2E-14 4.9E-19 120.5 16.7 138 109-257 71-214 (226)
68 PF13649 Methyltransf_25: Meth 99.6 9.3E-16 2E-20 113.1 7.1 93 114-206 1-101 (101)
69 PRK00121 trmB tRNA (guanine-N( 99.6 3.7E-15 8E-20 123.7 11.5 124 110-249 40-177 (202)
70 PLN02232 ubiquinone biosynthes 99.6 7.4E-15 1.6E-19 117.4 12.7 118 138-255 1-149 (160)
71 PRK07580 Mg-protoporphyrin IX 99.6 1.1E-14 2.4E-19 123.4 14.5 144 110-259 63-220 (230)
72 PLN02336 phosphoethanolamine N 99.6 4.4E-15 9.5E-20 139.0 12.3 148 100-252 28-181 (475)
73 TIGR00537 hemK_rel_arch HemK-r 99.6 2.2E-14 4.8E-19 116.9 14.8 126 110-255 19-167 (179)
74 PRK06922 hypothetical protein; 99.6 3.5E-15 7.6E-20 139.8 11.3 105 110-214 418-539 (677)
75 PLN03075 nicotianamine synthas 99.6 2.5E-14 5.5E-19 123.4 15.5 102 110-212 123-233 (296)
76 PRK11088 rrmA 23S rRNA methylt 99.6 1.8E-14 3.8E-19 125.2 13.3 132 110-256 85-221 (272)
77 PF03848 TehB: Tellurite resis 99.6 6.8E-15 1.5E-19 119.5 9.5 138 110-256 30-173 (192)
78 PF05401 NodS: Nodulation prot 99.6 6.8E-14 1.5E-18 112.5 15.1 134 110-254 43-180 (201)
79 TIGR02469 CbiT precorrin-6Y C5 99.6 5E-14 1.1E-18 107.4 12.8 111 98-212 8-122 (124)
80 TIGR00091 tRNA (guanine-N(7)-) 99.6 2.5E-14 5.5E-19 118.0 11.1 105 110-214 16-134 (194)
81 PRK13255 thiopurine S-methyltr 99.6 8.3E-14 1.8E-18 116.6 14.1 137 110-254 37-191 (218)
82 PRK00377 cbiT cobalt-precorrin 99.6 1.3E-13 2.9E-18 114.1 15.1 139 95-254 26-170 (198)
83 PTZ00146 fibrillarin; Provisio 99.5 9.1E-13 2E-17 113.4 19.3 156 93-258 113-276 (293)
84 COG2242 CobL Precorrin-6B meth 99.5 4.5E-13 9.7E-18 106.9 15.9 138 93-252 18-160 (187)
85 COG4123 Predicted O-methyltran 99.5 4.4E-13 9.6E-18 112.5 15.3 149 110-281 44-216 (248)
86 KOG1541 Predicted protein carb 99.5 4.4E-14 9.5E-19 114.3 8.7 162 74-253 13-187 (270)
87 PF05175 MTS: Methyltransferas 99.5 4.9E-14 1.1E-18 113.8 9.0 103 110-213 31-141 (170)
88 PRK14968 putative methyltransf 99.5 4.1E-13 8.9E-18 110.0 14.6 125 110-253 23-173 (188)
89 PRK11188 rrmJ 23S rRNA methylt 99.5 3.6E-13 7.8E-18 112.2 14.3 102 105-214 46-167 (209)
90 TIGR01177 conserved hypothetic 99.5 2.8E-13 6.1E-18 120.8 14.0 145 87-254 160-316 (329)
91 PRK13944 protein-L-isoaspartat 99.5 1.8E-13 3.8E-18 114.0 11.8 108 97-211 60-172 (205)
92 PLN02672 methionine S-methyltr 99.5 9.4E-14 2E-18 137.8 11.7 167 70-254 78-304 (1082)
93 PRK14967 putative methyltransf 99.5 1.1E-12 2.3E-17 110.8 16.3 147 87-253 15-184 (223)
94 COG2264 PrmA Ribosomal protein 99.5 3.1E-13 6.7E-18 116.4 12.9 123 110-254 162-289 (300)
95 KOG1271 Methyltransferases [Ge 99.5 2.6E-13 5.6E-18 106.7 10.9 144 95-255 49-207 (227)
96 PF00891 Methyltransf_2: O-met 99.5 1.6E-13 3.4E-18 117.2 9.9 126 110-242 100-241 (241)
97 PRK00517 prmA ribosomal protei 99.5 4E-13 8.6E-18 115.3 12.0 122 110-255 119-240 (250)
98 PRK15001 SAM-dependent 23S rib 99.5 2.5E-13 5.4E-18 121.9 11.1 103 110-213 228-341 (378)
99 PF05219 DREV: DREV methyltran 99.5 1.2E-12 2.5E-17 109.7 13.4 160 110-277 94-264 (265)
100 PRK13942 protein-L-isoaspartat 99.5 1E-12 2.2E-17 109.9 13.2 109 96-211 63-175 (212)
101 TIGR00406 prmA ribosomal prote 99.5 5.3E-13 1.1E-17 116.8 11.8 123 110-255 159-285 (288)
102 TIGR00080 pimt protein-L-isoas 99.4 1.7E-12 3.7E-17 108.9 13.2 108 97-211 65-176 (215)
103 TIGR03438 probable methyltrans 99.4 6.1E-12 1.3E-16 110.8 16.9 102 110-211 63-176 (301)
104 PRK09489 rsmC 16S ribosomal RN 99.4 6.9E-13 1.5E-17 118.2 10.7 103 110-214 196-305 (342)
105 PRK07402 precorrin-6B methylas 99.4 4.6E-12 1E-16 104.7 14.9 115 95-214 26-144 (196)
106 PF05891 Methyltransf_PK: AdoM 99.4 4.5E-13 9.8E-18 109.6 7.8 142 110-254 55-202 (218)
107 PRK13256 thiopurine S-methyltr 99.4 9.1E-12 2E-16 104.1 15.3 134 110-252 43-196 (226)
108 COG2813 RsmC 16S RNA G1207 met 99.4 1E-12 2.2E-17 112.6 9.3 109 102-213 151-267 (300)
109 PRK14121 tRNA (guanine-N(7)-)- 99.4 2.5E-12 5.3E-17 115.1 12.1 106 110-215 122-238 (390)
110 PF06325 PrmA: Ribosomal prote 99.4 4.4E-13 9.5E-18 116.4 7.0 137 94-255 147-285 (295)
111 PF06080 DUF938: Protein of un 99.4 5.5E-12 1.2E-16 102.8 12.9 148 112-259 27-198 (204)
112 PHA03411 putative methyltransf 99.4 9.1E-12 2E-16 106.1 14.7 126 110-248 64-209 (279)
113 KOG2904 Predicted methyltransf 99.4 9E-13 2E-17 110.1 8.0 149 64-213 100-286 (328)
114 PF13659 Methyltransf_26: Meth 99.4 7.9E-13 1.7E-17 99.9 6.3 102 111-213 1-116 (117)
115 cd02440 AdoMet_MTases S-adenos 99.4 9.7E-12 2.1E-16 90.6 10.5 98 113-211 1-103 (107)
116 TIGR00438 rrmJ cell division p 99.3 3.9E-11 8.4E-16 98.5 14.2 96 109-212 31-146 (188)
117 PRK00312 pcm protein-L-isoaspa 99.3 2.6E-11 5.6E-16 101.5 13.2 108 96-212 65-175 (212)
118 PRK01581 speE spermidine synth 99.3 4.3E-11 9.3E-16 105.8 14.6 137 110-258 150-302 (374)
119 PF05724 TPMT: Thiopurine S-me 99.3 2.7E-11 5.8E-16 101.3 12.3 136 110-253 37-190 (218)
120 PF05148 Methyltransf_8: Hypot 99.3 4.1E-11 8.8E-16 97.2 12.6 135 92-256 54-188 (219)
121 COG2518 Pcm Protein-L-isoaspar 99.3 5E-11 1.1E-15 97.3 12.3 107 97-212 60-169 (209)
122 KOG2899 Predicted methyltransf 99.3 1.6E-10 3.5E-15 95.1 14.4 145 110-254 58-256 (288)
123 KOG2940 Predicted methyltransf 99.3 5.6E-12 1.2E-16 102.8 5.8 142 109-251 71-225 (325)
124 PRK04457 spermidine synthase; 99.3 3.8E-11 8.3E-16 103.5 11.3 103 110-212 66-177 (262)
125 COG2519 GCD14 tRNA(1-methylade 99.2 1.5E-10 3.3E-15 96.6 13.0 132 100-254 85-221 (256)
126 PRK00811 spermidine synthase; 99.2 7.2E-11 1.6E-15 103.0 10.8 102 110-211 76-190 (283)
127 PRK10901 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 106.3 13.9 129 109-250 243-398 (427)
128 PRK13943 protein-L-isoaspartat 99.2 1.7E-10 3.7E-15 101.8 12.9 108 97-211 68-179 (322)
129 KOG3178 Hydroxyindole-O-methyl 99.2 1.8E-10 3.9E-15 100.3 12.7 142 110-257 177-334 (342)
130 KOG3010 Methyltransferase [Gen 99.2 8.7E-11 1.9E-15 96.8 10.1 96 112-210 35-134 (261)
131 smart00650 rADc Ribosomal RNA 99.2 2.2E-10 4.7E-15 92.5 12.1 145 101-259 5-152 (169)
132 PRK03612 spermidine synthase; 99.2 3E-10 6.5E-15 107.1 14.0 127 110-248 297-439 (521)
133 PF01135 PCMT: Protein-L-isoas 99.2 7.1E-11 1.5E-15 98.0 7.9 110 95-211 58-171 (209)
134 KOG3045 Predicted RNA methylas 99.2 1.6E-10 3.4E-15 96.0 9.8 134 93-258 163-296 (325)
135 PF08704 GCD14: tRNA methyltra 99.2 3.4E-10 7.4E-15 95.9 11.7 133 101-255 32-173 (247)
136 TIGR00563 rsmB ribosomal RNA s 99.2 3.5E-10 7.6E-15 104.4 12.8 108 109-216 237-372 (426)
137 PRK14901 16S rRNA methyltransf 99.2 6.6E-10 1.4E-14 102.7 14.6 128 109-249 251-409 (434)
138 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.3E-10 7.1E-15 110.5 13.0 128 110-255 538-682 (702)
139 KOG1499 Protein arginine N-met 99.2 1.1E-10 2.5E-15 101.4 8.2 126 82-210 33-165 (346)
140 PF03291 Pox_MCEL: mRNA cappin 99.2 1.5E-10 3.3E-15 102.5 9.1 146 110-256 62-270 (331)
141 PF02390 Methyltransf_4: Putat 99.1 2.2E-10 4.7E-15 94.4 9.3 105 111-215 18-136 (195)
142 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.1E-09 2.3E-14 94.8 13.7 108 109-216 70-203 (264)
143 PRK14903 16S rRNA methyltransf 99.1 8.6E-10 1.9E-14 101.7 13.8 108 109-216 236-370 (431)
144 PRK14902 16S rRNA methyltransf 99.1 1.3E-09 2.9E-14 101.1 14.7 106 109-215 249-382 (444)
145 PRK13168 rumA 23S rRNA m(5)U19 99.1 8.3E-10 1.8E-14 102.4 13.0 138 94-255 282-426 (443)
146 PF01739 CheR: CheR methyltran 99.1 2E-10 4.4E-15 94.3 7.8 103 110-212 31-175 (196)
147 PHA03412 putative methyltransf 99.1 7.4E-10 1.6E-14 92.4 11.1 133 110-248 49-197 (241)
148 PRK15128 23S rRNA m(5)C1962 me 99.1 3.1E-10 6.7E-15 103.1 9.5 104 110-214 220-341 (396)
149 COG1352 CheR Methylase of chem 99.1 1.1E-09 2.4E-14 93.7 12.3 136 76-211 60-240 (268)
150 PF12147 Methyltransf_20: Puta 99.1 1.9E-09 4E-14 91.7 12.3 141 110-250 135-295 (311)
151 PLN02366 spermidine synthase 99.1 1.1E-09 2.4E-14 96.2 11.4 103 110-212 91-206 (308)
152 COG1041 Predicted DNA modifica 99.1 4.8E-09 1E-13 91.8 15.0 144 88-255 176-332 (347)
153 PRK14904 16S rRNA methyltransf 99.1 1.4E-09 3.1E-14 100.9 12.5 107 109-216 249-381 (445)
154 TIGR00417 speE spermidine synt 99.0 1.2E-09 2.7E-14 94.7 10.2 103 110-212 72-186 (270)
155 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.6E-09 5.6E-14 88.1 11.4 119 93-213 36-160 (199)
156 PRK10611 chemotaxis methyltran 99.0 4E-09 8.8E-14 91.4 12.6 123 85-211 94-261 (287)
157 PF11968 DUF3321: Putative met 99.0 7.1E-09 1.5E-13 84.8 13.0 128 111-262 52-190 (219)
158 PLN02781 Probable caffeoyl-CoA 99.0 3.8E-09 8.1E-14 89.6 11.8 103 110-215 68-181 (234)
159 KOG3987 Uncharacterized conser 99.0 1.5E-10 3.2E-15 93.1 2.7 164 109-280 111-287 (288)
160 PRK11727 23S rRNA mA1618 methy 99.0 5.9E-09 1.3E-13 91.8 13.0 145 110-254 114-293 (321)
161 TIGR00479 rumA 23S rRNA (uraci 99.0 9.2E-09 2E-13 95.2 13.4 135 97-254 280-421 (431)
162 COG2521 Predicted archaeal met 99.0 2.9E-09 6.2E-14 87.4 8.2 133 110-253 134-277 (287)
163 KOG1500 Protein arginine N-met 98.9 1.1E-08 2.3E-13 88.2 11.8 134 71-210 140-280 (517)
164 COG0220 Predicted S-adenosylme 98.9 5.4E-09 1.2E-13 87.6 9.4 104 112-215 50-167 (227)
165 TIGR00478 tly hemolysin TlyA f 98.9 8.6E-09 1.9E-13 86.6 10.5 131 109-254 74-218 (228)
166 PRK03522 rumB 23S rRNA methylu 98.9 1.4E-08 3.1E-13 90.0 12.5 121 110-254 173-297 (315)
167 PRK00274 ksgA 16S ribosomal RN 98.9 4.7E-09 1E-13 91.2 9.0 85 96-183 29-113 (272)
168 PF01170 UPF0020: Putative RNA 98.9 7.1E-09 1.5E-13 84.3 9.3 147 86-254 5-172 (179)
169 KOG1975 mRNA cap methyltransfe 98.9 3.8E-09 8.2E-14 90.5 7.6 150 109-259 116-323 (389)
170 KOG3191 Predicted N6-DNA-methy 98.9 3.8E-08 8.2E-13 77.8 12.3 127 110-253 43-193 (209)
171 COG2263 Predicted RNA methylas 98.9 5.1E-08 1.1E-12 77.9 13.1 120 110-254 45-169 (198)
172 PF07942 N2227: N2227-like pro 98.9 9.4E-08 2E-12 81.8 15.4 141 110-253 56-242 (270)
173 PF10294 Methyltransf_16: Puta 98.9 6.4E-09 1.4E-13 84.1 7.6 105 110-215 45-159 (173)
174 PRK14896 ksgA 16S ribosomal RN 98.9 1.2E-08 2.6E-13 88.0 9.7 85 96-185 16-101 (258)
175 COG4122 Predicted O-methyltran 98.8 1.7E-08 3.8E-13 83.6 8.9 104 110-216 59-170 (219)
176 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 9.2E-09 2E-13 87.5 7.0 141 110-252 56-238 (256)
177 PRK01544 bifunctional N5-gluta 98.8 3.8E-08 8.3E-13 92.5 10.8 106 110-215 347-465 (506)
178 PF02527 GidB: rRNA small subu 98.8 1E-07 2.2E-12 77.5 11.7 125 112-255 50-177 (184)
179 TIGR02085 meth_trns_rumB 23S r 98.8 9.6E-08 2.1E-12 86.7 12.6 122 110-255 233-358 (374)
180 COG1092 Predicted SAM-dependen 98.8 3.9E-08 8.5E-13 88.5 9.5 130 110-252 217-365 (393)
181 PLN02823 spermine synthase 98.8 8.8E-08 1.9E-12 85.1 11.5 101 110-211 103-219 (336)
182 PLN02476 O-methyltransferase 98.8 6.8E-08 1.5E-12 83.3 10.2 103 110-215 118-231 (278)
183 PF01596 Methyltransf_3: O-met 98.7 3.3E-08 7.1E-13 81.9 7.6 104 110-216 45-159 (205)
184 PTZ00338 dimethyladenosine tra 98.7 3.7E-08 8E-13 86.1 8.2 83 96-183 23-109 (294)
185 TIGR00755 ksgA dimethyladenosi 98.7 1.7E-07 3.6E-12 80.6 12.2 84 96-184 16-103 (253)
186 TIGR00095 RNA methyltransferas 98.7 8.5E-08 1.8E-12 78.7 9.2 102 110-213 49-160 (189)
187 PRK04338 N(2),N(2)-dimethylgua 98.7 7.9E-08 1.7E-12 87.1 8.5 99 111-213 58-159 (382)
188 PRK04148 hypothetical protein; 98.7 1.7E-07 3.6E-12 71.7 9.0 68 110-183 16-85 (134)
189 COG3963 Phospholipid N-methylt 98.7 4.7E-07 1E-11 70.8 11.2 118 94-214 33-158 (194)
190 PF10672 Methyltrans_SAM: S-ad 98.6 4.7E-08 1E-12 84.7 6.1 105 110-215 123-241 (286)
191 PF03141 Methyltransf_29: Puta 98.6 6.2E-08 1.4E-12 88.2 6.9 98 112-215 119-222 (506)
192 PRK00536 speE spermidine synth 98.6 5.9E-07 1.3E-11 76.9 11.7 93 110-212 72-171 (262)
193 KOG1661 Protein-L-isoaspartate 98.6 2.2E-07 4.8E-12 75.2 8.5 97 109-211 81-192 (237)
194 PF05185 PRMT5: PRMT5 arginine 98.6 2.1E-07 4.6E-12 85.9 9.5 98 111-209 187-294 (448)
195 COG0357 GidB Predicted S-adeno 98.6 2E-06 4.4E-11 71.2 13.5 131 111-259 68-201 (215)
196 KOG1331 Predicted methyltransf 98.6 1.8E-07 3.9E-12 79.4 7.2 104 98-211 36-142 (293)
197 PF03602 Cons_hypoth95: Conser 98.5 8E-08 1.7E-12 78.3 4.1 123 92-215 23-156 (183)
198 COG0421 SpeE Spermidine syntha 98.5 1E-06 2.2E-11 76.4 11.0 100 112-211 78-189 (282)
199 PF01564 Spermine_synth: Sperm 98.5 5.8E-07 1.3E-11 76.8 9.4 131 110-253 76-219 (246)
200 PRK05031 tRNA (uracil-5-)-meth 98.5 1E-06 2.3E-11 79.5 11.4 134 95-255 193-345 (362)
201 PF02475 Met_10: Met-10+ like- 98.5 4.5E-07 9.8E-12 74.6 8.1 96 109-209 100-199 (200)
202 PLN02589 caffeoyl-CoA O-methyl 98.5 4.9E-07 1.1E-11 76.9 8.5 102 110-214 79-192 (247)
203 KOG3201 Uncharacterized conser 98.5 7E-08 1.5E-12 74.8 2.8 146 95-256 15-169 (201)
204 PF09243 Rsm22: Mitochondrial 98.5 1.7E-06 3.8E-11 75.1 11.8 104 110-217 33-144 (274)
205 TIGR02143 trmA_only tRNA (urac 98.5 1.5E-06 3.2E-11 78.3 11.5 108 96-212 185-311 (353)
206 COG0030 KsgA Dimethyladenosine 98.5 9.2E-07 2E-11 75.2 9.4 85 95-182 16-102 (259)
207 PRK11933 yebU rRNA (cytosine-C 98.5 4.8E-06 1E-10 77.3 14.3 109 109-217 112-247 (470)
208 PF04672 Methyltransf_19: S-ad 98.4 1.6E-06 3.5E-11 73.8 9.6 137 112-250 70-233 (267)
209 PRK00050 16S rRNA m(4)C1402 me 98.4 6.1E-07 1.3E-11 78.1 7.2 84 98-182 8-97 (296)
210 COG0742 N6-adenine-specific me 98.4 9.1E-06 2E-10 65.6 11.8 122 92-214 24-156 (187)
211 KOG3420 Predicted RNA methylas 98.3 7.3E-07 1.6E-11 68.0 5.1 76 110-186 48-125 (185)
212 COG0500 SmtA SAM-dependent met 98.3 1.1E-05 2.3E-10 62.9 12.1 101 114-216 52-159 (257)
213 KOG0820 Ribosomal RNA adenine 98.3 3.2E-06 7E-11 71.3 8.9 83 95-182 44-130 (315)
214 COG2265 TrmA SAM-dependent met 98.3 8.2E-06 1.8E-10 75.0 11.3 139 94-255 278-422 (432)
215 PRK11783 rlmL 23S rRNA m(2)G24 98.3 7.4E-06 1.6E-10 80.3 11.7 125 89-213 169-348 (702)
216 TIGR03439 methyl_EasF probable 98.3 1.6E-05 3.4E-10 70.3 12.4 103 110-212 76-197 (319)
217 COG3897 Predicted methyltransf 98.3 5.6E-06 1.2E-10 66.6 8.6 117 97-218 67-185 (218)
218 PF08123 DOT1: Histone methyla 98.3 2.1E-06 4.5E-11 71.1 6.2 115 97-213 30-159 (205)
219 PF04816 DUF633: Family of unk 98.2 1.3E-05 2.9E-10 66.3 10.8 122 114-256 1-127 (205)
220 PF01269 Fibrillarin: Fibrilla 98.2 7.7E-05 1.7E-09 61.6 15.0 154 93-258 54-217 (229)
221 COG0144 Sun tRNA and rRNA cyto 98.2 5.9E-05 1.3E-09 68.0 14.8 109 108-216 154-292 (355)
222 KOG1269 SAM-dependent methyltr 98.2 3.6E-06 7.8E-11 75.4 6.9 103 110-213 110-216 (364)
223 COG2520 Predicted methyltransf 98.2 2.1E-05 4.6E-10 69.6 11.5 142 86-247 169-314 (341)
224 KOG2915 tRNA(1-methyladenosine 98.2 3.2E-05 6.9E-10 65.3 11.8 131 102-254 98-236 (314)
225 PF01728 FtsJ: FtsJ-like methy 98.2 2E-06 4.2E-11 70.1 4.0 120 110-254 23-164 (181)
226 COG0293 FtsJ 23S rRNA methylas 98.1 4.9E-05 1.1E-09 62.3 11.8 131 100-255 35-185 (205)
227 PF02384 N6_Mtase: N-6 DNA Met 98.1 2.6E-05 5.5E-10 69.2 11.1 141 109-261 45-220 (311)
228 COG4262 Predicted spermidine s 98.1 2.7E-05 5.8E-10 68.4 10.4 127 110-253 289-436 (508)
229 COG1889 NOP1 Fibrillarin-like 98.1 0.00031 6.7E-09 57.0 15.2 151 92-257 56-218 (231)
230 COG4798 Predicted methyltransf 98.1 5.2E-05 1.1E-09 60.9 10.4 162 102-269 41-223 (238)
231 TIGR00308 TRM1 tRNA(guanine-26 98.1 1.6E-05 3.5E-10 71.8 8.5 99 111-213 45-148 (374)
232 PRK11760 putative 23S rRNA C24 98.1 0.00011 2.4E-09 64.7 13.5 87 109-205 210-296 (357)
233 PF00398 RrnaAD: Ribosomal RNA 98.1 2.2E-05 4.8E-10 67.8 8.8 104 95-204 16-123 (262)
234 TIGR02987 met_A_Alw26 type II 98.0 2.8E-05 6.2E-10 73.9 9.6 73 110-182 31-119 (524)
235 COG4627 Uncharacterized protei 98.0 3.5E-06 7.5E-11 65.1 2.3 83 113-215 5-89 (185)
236 KOG3115 Methyltransferase-like 98.0 3.4E-05 7.4E-10 62.4 7.9 103 110-215 60-186 (249)
237 COG0116 Predicted N6-adenine-s 98.0 9.8E-05 2.1E-09 66.0 11.2 122 90-212 172-344 (381)
238 COG1189 Predicted rRNA methyla 98.0 7.4E-05 1.6E-09 62.2 9.7 146 100-254 69-225 (245)
239 KOG1663 O-methyltransferase [S 97.9 4.6E-05 9.9E-10 63.0 8.2 103 110-216 73-187 (237)
240 KOG1709 Guanidinoacetate methy 97.9 4.9E-05 1.1E-09 62.1 8.2 101 110-211 101-205 (271)
241 KOG2798 Putative trehalase [Ca 97.9 0.00017 3.6E-09 62.3 11.3 168 110-279 150-365 (369)
242 KOG2352 Predicted spermine/spe 97.9 8.6E-05 1.9E-09 67.9 9.9 100 113-213 51-162 (482)
243 COG4076 Predicted RNA methylas 97.9 3.2E-05 7E-10 61.8 6.0 98 110-211 32-134 (252)
244 KOG4589 Cell division protein 97.9 7.7E-05 1.7E-09 59.6 7.8 103 105-215 64-187 (232)
245 PF09445 Methyltransf_15: RNA 97.8 1.8E-05 3.9E-10 62.8 3.7 68 112-181 1-75 (163)
246 PF05958 tRNA_U5-meth_tr: tRNA 97.8 5.9E-05 1.3E-09 67.9 7.0 71 94-168 182-255 (352)
247 PF03059 NAS: Nicotianamine sy 97.7 0.00028 6.2E-09 60.8 8.9 101 111-211 121-229 (276)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00015 3.4E-09 63.2 7.2 106 109-214 84-221 (283)
249 TIGR00006 S-adenosyl-methyltra 97.6 0.00021 4.6E-09 62.5 7.8 84 97-181 8-98 (305)
250 TIGR01444 fkbM_fam methyltrans 97.6 0.00012 2.6E-09 57.0 5.3 56 113-168 1-59 (143)
251 COG2384 Predicted SAM-dependen 97.6 0.0017 3.7E-08 53.6 11.7 127 110-256 16-146 (226)
252 PLN02668 indole-3-acetate carb 97.6 0.0014 2.9E-08 59.3 12.2 146 111-256 64-312 (386)
253 PF07091 FmrO: Ribosomal RNA m 97.5 0.00042 9.2E-09 58.4 7.9 151 94-255 92-245 (251)
254 KOG2187 tRNA uracil-5-methyltr 97.5 0.00012 2.6E-09 67.2 4.3 57 110-168 383-442 (534)
255 PF13578 Methyltransf_24: Meth 97.5 1.6E-05 3.4E-10 58.7 -1.1 96 115-211 1-104 (106)
256 PF13679 Methyltransf_32: Meth 97.4 0.00039 8.5E-09 54.2 6.4 93 109-209 24-128 (141)
257 COG0275 Predicted S-adenosylme 97.4 0.0014 3.1E-08 56.6 10.1 84 97-181 11-102 (314)
258 PF04989 CmcI: Cephalosporin h 97.4 0.00075 1.6E-08 55.5 7.6 138 110-247 32-184 (206)
259 KOG2730 Methylase [General fun 97.3 0.00035 7.5E-09 57.4 5.0 95 110-206 94-196 (263)
260 PF03492 Methyltransf_7: SAM d 97.2 0.01 2.2E-07 53.2 13.4 146 110-255 16-255 (334)
261 PF05971 Methyltransf_10: Prot 97.1 0.00048 1E-08 60.0 3.9 76 111-187 103-189 (299)
262 COG5459 Predicted rRNA methyla 97.1 0.0011 2.4E-08 58.2 5.6 107 110-217 113-230 (484)
263 PF06962 rRNA_methylase: Putat 97.0 0.0014 3.1E-08 50.5 5.4 111 136-256 1-128 (140)
264 PF06859 Bin3: Bicoid-interact 97.0 0.00033 7.2E-09 51.3 1.7 88 175-262 1-101 (110)
265 COG1064 AdhP Zn-dependent alco 97.0 0.0081 1.7E-07 53.4 10.6 95 109-214 165-261 (339)
266 PRK10742 putative methyltransf 97.0 0.0022 4.8E-08 54.3 6.5 76 110-187 86-176 (250)
267 PF01861 DUF43: Protein of unk 96.9 0.022 4.7E-07 48.0 11.8 129 110-253 44-178 (243)
268 PF01795 Methyltransf_5: MraW 96.9 0.0023 5E-08 56.1 6.0 82 99-181 10-99 (310)
269 KOG1122 tRNA and rRNA cytosine 96.8 0.005 1.1E-07 55.5 7.9 107 108-215 239-374 (460)
270 KOG2793 Putative N2,N2-dimethy 96.8 0.0042 9.2E-08 52.7 7.0 105 110-216 86-203 (248)
271 KOG0024 Sorbitol dehydrogenase 96.8 0.015 3.3E-07 50.8 9.9 101 109-216 168-277 (354)
272 PRK09424 pntA NAD(P) transhydr 96.6 0.033 7.2E-07 52.5 12.1 100 109-213 163-286 (509)
273 PF03141 Methyltransf_29: Puta 96.5 0.004 8.7E-08 57.4 5.2 118 111-253 366-491 (506)
274 cd00315 Cyt_C5_DNA_methylase C 96.5 0.16 3.4E-06 44.2 14.7 129 113-256 2-145 (275)
275 COG1063 Tdh Threonine dehydrog 96.4 0.024 5.2E-07 51.1 9.4 101 110-216 168-273 (350)
276 PRK09880 L-idonate 5-dehydroge 96.4 0.021 4.5E-07 51.2 8.9 97 110-213 169-267 (343)
277 PF10354 DUF2431: Domain of un 96.3 0.099 2.1E-06 41.9 11.7 131 117-261 3-160 (166)
278 TIGR00027 mthyl_TIGR00027 meth 96.3 0.083 1.8E-06 45.6 11.9 138 112-251 83-248 (260)
279 PRK11524 putative methyltransf 96.2 0.013 2.7E-07 51.3 6.5 62 90-155 190-251 (284)
280 PF01555 N6_N4_Mtase: DNA meth 96.2 0.012 2.6E-07 49.1 6.0 59 90-152 173-231 (231)
281 cd08283 FDH_like_1 Glutathione 96.1 0.034 7.3E-07 50.8 9.1 102 109-213 183-307 (386)
282 PRK01747 mnmC bifunctional tRN 96.1 0.048 1E-06 53.5 10.5 127 110-257 57-231 (662)
283 KOG1596 Fibrillarin and relate 96.1 0.029 6.4E-07 46.9 7.5 110 94-212 138-261 (317)
284 KOG4058 Uncharacterized conser 96.1 0.069 1.5E-06 41.3 8.9 119 92-217 55-177 (199)
285 KOG1562 Spermidine synthase [A 96.0 0.027 5.8E-07 48.6 7.0 104 110-213 121-237 (337)
286 PHA01634 hypothetical protein 95.9 0.05 1.1E-06 41.0 7.2 71 110-181 28-98 (156)
287 KOG1099 SAM-dependent methyltr 95.8 0.018 4E-07 47.8 5.3 94 110-211 41-162 (294)
288 PF04445 SAM_MT: Putative SAM- 95.7 0.029 6.4E-07 47.2 6.0 74 112-187 77-163 (234)
289 PF11599 AviRa: RRNA methyltra 95.7 0.027 5.8E-07 46.4 5.5 103 110-212 51-214 (246)
290 PF02636 Methyltransf_28: Puta 95.6 0.031 6.7E-07 48.0 6.2 74 111-189 19-109 (252)
291 PRK13699 putative methylase; P 95.5 0.047 1E-06 46.1 6.7 61 90-154 145-205 (227)
292 KOG0822 Protein kinase inhibit 95.4 0.046 1E-06 50.8 6.8 117 94-210 349-476 (649)
293 COG1867 TRM1 N2,N2-dimethylgua 95.4 0.048 1.1E-06 48.6 6.7 99 111-213 53-155 (380)
294 COG0286 HsdM Type I restrictio 95.3 0.88 1.9E-05 43.0 15.1 138 109-258 185-360 (489)
295 KOG2920 Predicted methyltransf 95.3 0.02 4.3E-07 49.2 3.7 102 109-211 115-233 (282)
296 KOG2198 tRNA cytosine-5-methyl 95.2 0.7 1.5E-05 41.4 13.2 109 109-217 154-301 (375)
297 PF07757 AdoMet_MTase: Predict 95.2 0.017 3.6E-07 42.2 2.5 31 110-142 58-88 (112)
298 TIGR00561 pntA NAD(P) transhyd 95.0 0.14 3E-06 48.4 8.7 96 110-210 163-282 (511)
299 PRK13699 putative methylase; P 94.8 0.2 4.3E-06 42.3 8.5 79 160-255 3-98 (227)
300 PF11312 DUF3115: Protein of u 94.7 0.06 1.3E-06 47.1 5.2 105 110-214 86-244 (315)
301 PF03269 DUF268: Caenorhabditi 94.5 0.048 1E-06 42.9 3.7 132 111-254 2-146 (177)
302 cd08230 glucose_DH Glucose deh 94.4 0.3 6.6E-06 43.9 9.4 93 110-214 172-271 (355)
303 COG3510 CmcI Cephalosporin hyd 94.3 0.26 5.7E-06 40.0 7.6 132 110-245 69-211 (237)
304 COG1565 Uncharacterized conser 94.3 0.12 2.5E-06 46.2 6.1 46 110-155 77-130 (370)
305 PF02005 TRM: N2,N2-dimethylgu 94.2 0.11 2.3E-06 47.3 6.0 99 111-213 50-155 (377)
306 cd08237 ribitol-5-phosphate_DH 94.1 0.36 7.8E-06 43.2 9.1 94 109-213 162-257 (341)
307 cd08254 hydroxyacyl_CoA_DH 6-h 94.1 0.95 2.1E-05 40.0 11.7 94 109-213 164-264 (338)
308 PF05430 Methyltransf_30: S-ad 93.8 0.23 5E-06 37.6 6.1 79 159-258 33-116 (124)
309 TIGR01202 bchC 2-desacetyl-2-h 93.7 0.61 1.3E-05 41.1 9.7 88 110-213 144-232 (308)
310 KOG1253 tRNA methyltransferase 93.7 0.084 1.8E-06 48.8 4.1 101 110-214 109-218 (525)
311 COG5310 Homospermidine synthas 93.4 0.47 1E-05 41.7 8.0 87 203-289 151-250 (481)
312 TIGR02822 adh_fam_2 zinc-bindi 93.3 0.97 2.1E-05 40.2 10.5 91 109-213 164-255 (329)
313 cd05188 MDR Medium chain reduc 93.1 0.74 1.6E-05 39.0 9.1 96 109-214 133-234 (271)
314 PF00145 DNA_methylase: C-5 cy 93.1 1.8 3.9E-05 38.1 11.9 129 113-258 2-146 (335)
315 KOG2651 rRNA adenine N-6-methy 93.1 0.19 4E-06 45.1 5.2 42 110-152 153-194 (476)
316 KOG2671 Putative RNA methylase 93.0 0.14 3E-06 45.3 4.2 103 109-213 207-355 (421)
317 cd00401 AdoHcyase S-adenosyl-L 92.9 1.3 2.7E-05 40.9 10.5 101 98-214 189-291 (413)
318 PF00107 ADH_zinc_N: Zinc-bind 92.9 0.54 1.2E-05 35.4 7.0 86 120-215 1-92 (130)
319 cd08232 idonate-5-DH L-idonate 92.8 0.84 1.8E-05 40.5 9.3 93 110-212 165-262 (339)
320 COG0270 Dcm Site-specific DNA 92.7 1.5 3.3E-05 39.1 10.7 123 111-247 3-141 (328)
321 TIGR00675 dcm DNA-methyltransf 92.7 1.8 3.9E-05 38.5 11.0 127 114-256 1-142 (315)
322 COG3315 O-Methyltransferase in 92.6 1.3 2.8E-05 39.0 9.8 138 111-251 93-262 (297)
323 COG4301 Uncharacterized conser 92.4 1.6 3.6E-05 37.0 9.6 102 110-211 78-192 (321)
324 COG0686 Ald Alanine dehydrogen 92.4 0.37 8E-06 42.2 6.0 99 110-210 167-266 (371)
325 TIGR03451 mycoS_dep_FDH mycoth 92.3 0.66 1.4E-05 41.8 8.0 96 109-213 175-277 (358)
326 COG3129 Predicted SAM-dependen 92.2 0.38 8.3E-06 40.3 5.6 77 110-187 78-165 (292)
327 KOG1501 Arginine N-methyltrans 92.1 0.28 6E-06 44.8 5.1 70 111-181 67-141 (636)
328 KOG2918 Carboxymethyl transfer 92.1 4.7 0.0001 35.4 12.3 146 110-256 87-280 (335)
329 cd08281 liver_ADH_like1 Zinc-d 91.9 0.71 1.5E-05 41.8 7.7 96 109-213 190-291 (371)
330 TIGR03366 HpnZ_proposed putati 91.7 0.77 1.7E-05 39.8 7.5 94 110-213 120-219 (280)
331 cd08239 THR_DH_like L-threonin 91.5 0.82 1.8E-05 40.6 7.6 94 110-213 163-263 (339)
332 PRK10458 DNA cytosine methylas 91.2 9.1 0.0002 36.0 14.2 58 111-169 88-146 (467)
333 KOG3924 Putative protein methy 91.1 0.37 8.1E-06 43.4 4.7 121 94-216 177-312 (419)
334 PTZ00357 methyltransferase; Pr 91.0 0.87 1.9E-05 44.2 7.3 96 112-207 702-830 (1072)
335 PF02254 TrkA_N: TrkA-N domain 90.9 3.2 7E-05 30.5 9.2 102 119-249 4-113 (116)
336 KOG2539 Mitochondrial/chloropl 90.8 1.3 2.9E-05 40.8 8.0 106 110-215 200-318 (491)
337 PRK10309 galactitol-1-phosphat 90.7 1.3 2.7E-05 39.6 8.0 97 109-214 159-262 (347)
338 PF05206 TRM13: Methyltransfer 90.2 0.51 1.1E-05 40.6 4.7 62 109-170 17-86 (259)
339 PLN02740 Alcohol dehydrogenase 90.1 1.8 4E-05 39.3 8.6 96 109-213 197-301 (381)
340 PF03514 GRAS: GRAS domain fam 90.0 2.8 6E-05 38.3 9.6 102 110-211 110-243 (374)
341 cd08255 2-desacetyl-2-hydroxye 90.0 3.8 8.2E-05 35.1 10.2 93 109-212 96-190 (277)
342 KOG1227 Putative methyltransfe 89.7 0.12 2.6E-06 44.8 0.5 97 110-211 194-295 (351)
343 TIGR03201 dearomat_had 6-hydro 89.6 2.2 4.7E-05 38.3 8.6 98 109-214 165-274 (349)
344 COG1568 Predicted methyltransf 89.5 2 4.4E-05 37.1 7.6 99 110-211 152-259 (354)
345 PF03686 UPF0146: Uncharacteri 89.5 0.59 1.3E-05 35.3 4.0 88 110-212 13-102 (127)
346 TIGR02819 fdhA_non_GSH formald 89.4 5.8 0.00013 36.3 11.3 103 109-214 184-301 (393)
347 PLN02827 Alcohol dehydrogenase 89.4 1.6 3.4E-05 39.8 7.6 96 109-213 192-296 (378)
348 KOG2352 Predicted spermine/spe 89.2 0.86 1.9E-05 42.3 5.6 106 110-215 295-419 (482)
349 KOG2078 tRNA modification enzy 89.1 0.25 5.5E-06 44.9 2.1 58 107-166 246-308 (495)
350 COG1255 Uncharacterized protei 89.0 1.4 3E-05 32.7 5.4 85 111-211 14-101 (129)
351 TIGR00936 ahcY adenosylhomocys 88.9 7.6 0.00016 35.8 11.5 90 109-214 193-284 (406)
352 PF02737 3HCDH_N: 3-hydroxyacy 88.3 3 6.6E-05 33.7 7.8 95 113-215 1-117 (180)
353 PLN02586 probable cinnamyl alc 88.2 3 6.5E-05 37.6 8.6 96 109-213 182-279 (360)
354 PLN02514 cinnamyl-alcohol dehy 88.2 4.3 9.3E-05 36.5 9.6 96 109-213 179-276 (357)
355 cd08234 threonine_DH_like L-th 87.7 8.6 0.00019 33.8 11.1 94 109-212 158-257 (334)
356 TIGR00518 alaDH alanine dehydr 87.7 1.3 2.9E-05 40.2 5.8 100 110-211 166-266 (370)
357 cd05213 NAD_bind_Glutamyl_tRNA 87.6 3 6.6E-05 36.9 8.0 123 110-243 177-302 (311)
358 cd08245 CAD Cinnamyl alcohol d 87.6 5.1 0.00011 35.3 9.6 95 109-213 161-257 (330)
359 COG0604 Qor NADPH:quinone redu 87.5 2.4 5.2E-05 37.8 7.4 99 109-215 141-244 (326)
360 cd08285 NADP_ADH NADP(H)-depen 87.5 3.1 6.8E-05 37.1 8.2 96 109-213 165-267 (351)
361 PF05711 TylF: Macrocin-O-meth 87.1 3.1 6.8E-05 35.5 7.4 120 111-247 75-232 (248)
362 cd08242 MDR_like Medium chain 86.8 7.9 0.00017 33.9 10.3 91 109-212 154-245 (319)
363 COG1062 AdhC Zn-dependent alco 86.5 7.2 0.00016 34.8 9.4 96 109-213 184-286 (366)
364 TIGR02818 adh_III_F_hyde S-(hy 86.3 4.2 9.2E-05 36.7 8.4 96 109-213 184-288 (368)
365 PF11899 DUF3419: Protein of u 86.3 1 2.2E-05 41.1 4.2 71 145-217 265-339 (380)
366 cd08238 sorbose_phosphate_red 86.3 14 0.0003 34.0 11.9 97 109-211 174-287 (410)
367 COG1748 LYS9 Saccharopine dehy 86.1 7.1 0.00015 35.7 9.5 69 112-182 2-75 (389)
368 PRK11064 wecC UDP-N-acetyl-D-m 86.0 15 0.00033 33.9 12.0 103 112-217 4-124 (415)
369 PLN03154 putative allyl alcoho 86.0 4.5 9.8E-05 36.3 8.4 95 109-213 157-259 (348)
370 TIGR02825 B4_12hDH leukotriene 85.6 4 8.7E-05 36.0 7.8 93 109-212 137-237 (325)
371 cd08231 MDR_TM0436_like Hypoth 85.4 19 0.0004 32.2 12.1 95 109-213 176-281 (361)
372 cd05278 FDH_like Formaldehyde 85.4 4.6 9.9E-05 35.8 8.1 95 109-212 166-267 (347)
373 PRK15057 UDP-glucose 6-dehydro 85.2 16 0.00035 33.5 11.5 99 113-217 2-122 (388)
374 PF14740 DUF4471: Domain of un 85.1 2.1 4.5E-05 37.4 5.4 66 174-250 221-286 (289)
375 cd08277 liver_alcohol_DH_like 85.1 4.7 0.0001 36.4 8.1 96 109-213 183-287 (365)
376 cd08261 Zn_ADH7 Alcohol dehydr 85.1 4.6 9.9E-05 35.8 7.9 94 109-212 158-258 (337)
377 PRK11524 putative methyltransf 85.1 0.84 1.8E-05 39.9 3.1 55 158-212 8-80 (284)
378 cd08300 alcohol_DH_class_III c 84.7 4.9 0.00011 36.3 8.0 96 109-213 185-289 (368)
379 PF04072 LCM: Leucine carboxyl 84.6 2.3 4.9E-05 34.5 5.2 79 112-191 80-173 (183)
380 PRK07066 3-hydroxybutyryl-CoA 84.4 8 0.00017 34.4 9.0 92 111-209 7-116 (321)
381 cd08293 PTGR2 Prostaglandin re 84.3 14 0.00029 32.8 10.7 91 112-212 156-254 (345)
382 COG2933 Predicted SAM-dependen 84.2 5.5 0.00012 34.2 7.3 123 110-247 211-333 (358)
383 PF03721 UDPG_MGDP_dh_N: UDP-g 84.1 11 0.00024 30.6 9.1 114 113-245 2-139 (185)
384 PF11253 DUF3052: Protein of u 83.9 14 0.00031 27.9 8.7 73 175-259 45-117 (127)
385 PRK11730 fadB multifunctional 83.9 10 0.00022 37.8 10.3 136 112-255 314-495 (715)
386 cd08296 CAD_like Cinnamyl alco 83.9 5.1 0.00011 35.5 7.7 95 109-213 162-260 (333)
387 cd05285 sorbitol_DH Sorbitol d 83.9 19 0.00041 32.0 11.4 94 109-212 161-265 (343)
388 PF01488 Shikimate_DH: Shikima 83.9 2 4.4E-05 32.9 4.4 77 110-188 11-88 (135)
389 PF05050 Methyltransf_21: Meth 83.8 2.3 5E-05 33.2 4.9 38 116-153 1-42 (167)
390 cd08294 leukotriene_B4_DH_like 83.2 20 0.00043 31.4 11.2 93 109-212 142-241 (329)
391 PLN02178 cinnamyl-alcohol dehy 83.1 5.3 0.00011 36.3 7.5 93 110-213 178-274 (375)
392 PRK10083 putative oxidoreducta 82.7 9 0.00019 33.9 8.8 98 109-213 159-260 (339)
393 PRK11154 fadJ multifunctional 82.5 16 0.00035 36.4 11.1 138 111-255 309-492 (708)
394 cd08301 alcohol_DH_plants Plan 82.4 7.8 0.00017 34.9 8.4 96 109-213 186-290 (369)
395 cd08233 butanediol_DH_like (2R 82.2 7.7 0.00017 34.6 8.2 95 109-213 171-273 (351)
396 cd08236 sugar_DH NAD(P)-depend 82.0 8 0.00017 34.2 8.2 94 109-212 158-258 (343)
397 cd01065 NAD_bind_Shikimate_DH 81.7 22 0.00047 27.4 11.3 73 110-186 18-92 (155)
398 cd08298 CAD2 Cinnamyl alcohol 81.4 18 0.00038 31.8 10.1 91 109-213 166-257 (329)
399 PF12692 Methyltransf_17: S-ad 81.3 2.4 5.1E-05 33.0 3.8 99 111-213 29-135 (160)
400 PRK05476 S-adenosyl-L-homocyst 81.3 11 0.00024 34.9 8.9 90 110-215 211-302 (425)
401 cd08265 Zn_ADH3 Alcohol dehydr 81.1 15 0.00032 33.4 9.7 96 109-213 202-308 (384)
402 TIGR02437 FadB fatty oxidation 80.9 11 0.00023 37.6 9.2 137 111-255 313-495 (714)
403 PF07279 DUF1442: Protein of u 80.9 15 0.00032 30.6 8.5 108 101-214 32-150 (218)
404 cd08278 benzyl_alcohol_DH Benz 80.8 25 0.00054 31.6 11.1 96 109-213 185-286 (365)
405 PRK05786 fabG 3-ketoacyl-(acyl 80.8 27 0.00059 28.8 10.7 103 110-213 4-136 (238)
406 PF10237 N6-adenineMlase: Prob 80.8 27 0.00058 27.8 10.0 94 110-212 25-123 (162)
407 PRK08267 short chain dehydroge 80.6 18 0.00039 30.6 9.6 73 112-185 2-87 (260)
408 cd08295 double_bond_reductase_ 80.6 11 0.00024 33.4 8.6 94 109-212 150-251 (338)
409 PLN02494 adenosylhomocysteinas 80.6 8.1 0.00018 36.2 7.7 103 97-214 240-343 (477)
410 cd08286 FDH_like_ADH2 formalde 80.5 12 0.00026 33.2 8.8 95 110-212 166-266 (345)
411 KOG1269 SAM-dependent methyltr 79.5 8.3 0.00018 35.0 7.3 103 110-215 180-316 (364)
412 PLN00203 glutamyl-tRNA reducta 79.3 7.1 0.00015 37.2 7.1 72 110-183 265-337 (519)
413 PRK08306 dipicolinate synthase 79.0 11 0.00024 33.1 7.9 89 110-211 151-240 (296)
414 KOG0023 Alcohol dehydrogenase, 78.1 4.9 0.00011 35.5 5.2 99 104-215 176-282 (360)
415 TIGR02441 fa_ox_alpha_mit fatt 77.4 18 0.00039 36.2 9.6 136 112-255 336-517 (737)
416 PRK05808 3-hydroxybutyryl-CoA 77.4 24 0.00052 30.5 9.5 91 112-210 4-116 (282)
417 cd08240 6_hydroxyhexanoate_dh_ 77.3 39 0.00085 30.0 11.2 95 110-213 175-275 (350)
418 PRK09599 6-phosphogluconate de 77.0 38 0.00083 29.7 10.7 116 113-252 2-119 (301)
419 TIGR02440 FadJ fatty oxidation 76.9 25 0.00053 35.0 10.4 136 112-254 305-486 (699)
420 PRK08265 short chain dehydroge 76.7 30 0.00065 29.3 9.8 72 110-184 5-89 (261)
421 PF03446 NAD_binding_2: NAD bi 76.5 6.8 0.00015 31.0 5.4 114 113-256 3-123 (163)
422 TIGR00497 hsdM type I restrict 76.5 44 0.00095 31.8 11.6 104 110-213 217-356 (501)
423 PRK05708 2-dehydropantoate 2-r 76.5 32 0.00069 30.3 10.1 97 112-214 3-106 (305)
424 PF11899 DUF3419: Protein of u 76.4 9 0.00019 35.0 6.6 40 110-151 35-74 (380)
425 KOG1098 Putative SAM-dependent 76.2 2.5 5.5E-05 40.5 3.1 98 105-210 39-156 (780)
426 cd05281 TDH Threonine dehydrog 75.5 20 0.00044 31.7 8.8 95 109-212 162-262 (341)
427 PRK06522 2-dehydropantoate 2-r 75.4 46 0.00099 28.9 10.8 96 113-214 2-102 (304)
428 PRK03562 glutathione-regulated 75.4 40 0.00087 33.0 11.3 92 111-212 400-498 (621)
429 KOG0022 Alcohol dehydrogenase, 75.3 7.6 0.00016 34.4 5.5 93 110-212 192-294 (375)
430 cd05279 Zn_ADH1 Liver alcohol 75.2 18 0.0004 32.5 8.5 99 109-213 182-286 (365)
431 PRK00045 hemA glutamyl-tRNA re 74.3 16 0.00035 33.9 8.0 69 110-184 181-251 (423)
432 COG0541 Ffh Signal recognition 74.2 15 0.00033 33.9 7.4 107 110-216 99-225 (451)
433 TIGR00872 gnd_rel 6-phosphoglu 74.0 40 0.00087 29.5 10.0 117 113-254 2-120 (298)
434 COG4017 Uncharacterized protei 74.0 6.2 0.00013 32.2 4.3 88 110-215 44-132 (254)
435 cd08279 Zn_ADH_class_III Class 73.8 40 0.00087 30.2 10.3 96 109-213 181-283 (363)
436 PRK08324 short chain dehydroge 73.8 33 0.00072 33.9 10.5 103 110-213 421-558 (681)
437 TIGR00692 tdh L-threonine 3-de 73.5 62 0.0013 28.6 11.4 94 110-213 161-262 (340)
438 PRK06035 3-hydroxyacyl-CoA deh 73.0 16 0.00034 31.9 7.2 90 112-209 4-118 (291)
439 PLN02702 L-idonate 5-dehydroge 73.0 27 0.00058 31.3 9.0 97 110-213 181-286 (364)
440 PRK10669 putative cation:proto 72.8 63 0.0014 31.1 11.9 90 112-211 418-514 (558)
441 cd08263 Zn_ADH10 Alcohol dehyd 72.7 63 0.0014 28.9 11.4 95 109-212 186-287 (367)
442 PRK07819 3-hydroxybutyryl-CoA 72.7 16 0.00034 31.9 7.1 95 112-214 6-123 (286)
443 PRK05396 tdh L-threonine 3-deh 72.6 20 0.00043 31.7 8.0 95 110-213 163-264 (341)
444 PF07109 Mg-por_mtran_C: Magne 72.6 26 0.00056 25.2 6.8 27 233-259 62-88 (97)
445 KOG2811 Uncharacterized conser 72.3 11 0.00024 34.0 5.9 60 110-169 182-246 (420)
446 KOG0821 Predicted ribosomal RN 72.2 7.4 0.00016 32.5 4.5 71 96-168 37-109 (326)
447 COG0287 TyrA Prephenate dehydr 71.9 18 0.00039 31.6 7.2 89 111-208 3-94 (279)
448 PRK03659 glutathione-regulated 71.8 52 0.0011 32.1 11.1 93 111-213 400-499 (601)
449 PRK14106 murD UDP-N-acetylmura 71.6 84 0.0018 29.1 12.2 72 110-185 4-78 (450)
450 COG0863 DNA modification methy 71.6 15 0.00032 31.9 6.8 60 92-155 206-265 (302)
451 PRK07417 arogenate dehydrogena 70.7 23 0.00049 30.7 7.7 84 113-208 2-87 (279)
452 PRK12490 6-phosphogluconate de 70.5 55 0.0012 28.7 10.1 118 113-254 2-121 (299)
453 cd08291 ETR_like_1 2-enoyl thi 70.4 63 0.0014 28.3 10.7 91 111-212 143-242 (324)
454 COG0771 MurD UDP-N-acetylmuram 70.1 67 0.0015 30.1 10.8 73 111-186 7-80 (448)
455 PF02153 PDH: Prephenate dehyd 69.5 7.1 0.00015 33.5 4.2 77 124-210 1-77 (258)
456 KOG1197 Predicted quinone oxid 69.4 47 0.001 28.7 8.7 97 107-211 143-244 (336)
457 cd05284 arabinose_DH_like D-ar 69.0 72 0.0016 28.0 10.8 95 109-213 166-267 (340)
458 cd08289 MDR_yhfp_like Yhfp put 68.2 25 0.00055 30.6 7.6 93 110-213 146-244 (326)
459 cd08284 FDH_like_2 Glutathione 67.8 82 0.0018 27.7 10.9 93 110-212 167-266 (344)
460 cd05283 CAD1 Cinnamyl alcohol 67.7 56 0.0012 28.8 9.8 95 109-213 168-264 (337)
461 cd08282 PFDH_like Pseudomonas 67.6 37 0.00081 30.6 8.7 97 110-212 176-285 (375)
462 PTZ00075 Adenosylhomocysteinas 67.0 28 0.00062 32.7 7.7 89 110-214 253-343 (476)
463 cd08287 FDH_like_ADH3 formalde 66.8 84 0.0018 27.6 10.8 94 110-213 168-269 (345)
464 cd08260 Zn_ADH6 Alcohol dehydr 66.6 67 0.0014 28.3 10.0 93 110-212 165-264 (345)
465 PF06557 DUF1122: Protein of u 66.5 32 0.0007 27.2 6.7 77 192-281 66-143 (170)
466 PLN03209 translocon at the inn 66.5 93 0.002 30.2 11.2 74 110-184 79-168 (576)
467 cd08274 MDR9 Medium chain dehy 66.5 92 0.002 27.4 11.2 92 109-212 176-273 (350)
468 PRK09260 3-hydroxybutyryl-CoA 66.2 34 0.00073 29.8 7.8 94 112-212 2-117 (288)
469 COG5379 BtaA S-adenosylmethion 66.0 17 0.00036 31.9 5.5 41 110-152 63-103 (414)
470 PF01408 GFO_IDH_MocA: Oxidore 66.0 39 0.00085 24.6 7.2 111 113-247 2-115 (120)
471 PF01262 AlaDh_PNT_C: Alanine 66.0 26 0.00057 27.8 6.6 43 110-153 19-62 (168)
472 PRK09496 trkA potassium transp 65.5 40 0.00086 31.3 8.6 69 110-182 230-304 (453)
473 cd08270 MDR4 Medium chain dehy 65.4 85 0.0018 26.9 10.3 89 110-212 132-222 (305)
474 PRK09422 ethanol-active dehydr 65.3 32 0.00069 30.2 7.7 94 109-212 161-261 (338)
475 PRK03369 murD UDP-N-acetylmura 65.1 1.3E+02 0.0027 28.5 12.9 70 110-186 11-81 (488)
476 PRK07530 3-hydroxybutyryl-CoA 65.0 31 0.00067 30.1 7.4 90 112-209 5-116 (292)
477 KOG1209 1-Acyl dihydroxyaceton 64.9 38 0.00082 28.4 7.2 69 110-182 6-88 (289)
478 PF02558 ApbA: Ketopantoate re 64.2 22 0.00047 27.3 5.7 98 114-216 1-105 (151)
479 PRK12549 shikimate 5-dehydroge 64.2 57 0.0012 28.4 8.8 75 110-186 126-203 (284)
480 TIGR01761 thiaz-red thiazoliny 64.0 62 0.0013 29.2 9.1 96 110-214 2-99 (343)
481 COG0677 WecC UDP-N-acetyl-D-ma 63.9 1.2E+02 0.0026 27.9 12.4 102 110-217 8-133 (436)
482 TIGR02356 adenyl_thiF thiazole 63.9 30 0.00064 28.5 6.7 34 110-143 20-54 (202)
483 PRK07502 cyclohexadienyl dehyd 63.8 33 0.00071 30.2 7.4 90 112-210 7-98 (307)
484 PLN02545 3-hydroxybutyryl-CoA 63.5 35 0.00075 29.8 7.4 91 112-209 5-116 (295)
485 COG0373 HemA Glutamyl-tRNA red 63.4 60 0.0013 30.0 9.0 70 110-184 177-247 (414)
486 cd08256 Zn_ADH2 Alcohol dehydr 63.1 97 0.0021 27.4 10.5 94 110-212 174-274 (350)
487 cd05288 PGDH Prostaglandin deh 63.0 1E+02 0.0022 26.8 10.5 94 109-212 144-244 (329)
488 cd05289 MDR_like_2 alcohol deh 62.7 62 0.0014 27.5 8.9 92 109-212 143-238 (309)
489 cd08241 QOR1 Quinone oxidoredu 62.6 90 0.002 26.7 10.0 93 109-212 138-238 (323)
490 cd08267 MDR1 Medium chain dehy 62.1 92 0.002 26.7 9.9 94 109-212 142-240 (319)
491 TIGR01035 hemA glutamyl-tRNA r 61.7 34 0.00074 31.7 7.3 39 110-148 179-218 (417)
492 PF02086 MethyltransfD12: D12 61.6 9.9 0.00022 32.3 3.6 52 97-151 8-59 (260)
493 cd08262 Zn_ADH8 Alcohol dehydr 61.4 57 0.0012 28.7 8.6 96 109-213 160-265 (341)
494 cd08243 quinone_oxidoreductase 61.2 1E+02 0.0022 26.4 10.1 92 109-213 141-239 (320)
495 KOG1198 Zinc-binding oxidoredu 60.6 18 0.00039 32.6 5.2 96 109-211 156-255 (347)
496 PRK15182 Vi polysaccharide bio 60.6 1.4E+02 0.0031 27.7 11.8 102 110-217 5-125 (425)
497 cd08299 alcohol_DH_class_I_II_ 60.1 68 0.0015 28.9 9.0 95 109-213 189-293 (373)
498 cd08269 Zn_ADH9 Alcohol dehydr 58.8 1.2E+02 0.0026 26.1 11.0 93 110-212 129-229 (312)
499 PLN02427 UDP-apiose/xylose syn 58.4 43 0.00093 30.3 7.4 73 110-183 13-94 (386)
500 KOG2782 Putative SAM dependent 58.3 10 0.00023 31.6 2.9 55 98-153 32-86 (303)
No 1
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=100.00 E-value=1.9e-40 Score=291.98 Aligned_cols=287 Identities=86% Similarity=1.430 Sum_probs=253.2
Q ss_pred CcccccccccccceecccCCCCCccccCCcCCCCCCccccccCCcee----eeeecccccCCCCCCchhHhhhhHHHHHH
Q 022929 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTV----QSIKCSLSATSRPASQPRFIQHKKEAFWF 76 (290)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (290)
||++|++|.+.++++.+..|.|++|...++++++++...+....... .+..|+.+ ..++.+++.+.|+..+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~ 79 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSS-SSRPASQPRFIQHKKEAFWF 79 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceeccccccc-cCCcccccchhhhhhcceeE
Confidence 89999999999999999999999999999999998866554443332 45566664 78999999999999999999
Q ss_pred HhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC
Q 022929 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (290)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 156 (290)
|+..+.+|+..+.++.|.+.++..+++......++.+|||||||+|.++..+++..++.+++++|+|+++++.|+++...
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~ 159 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence 99999999998888888888888888766554567899999999999999998887778999999999999999988665
Q ss_pred CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHH
Q 022929 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (290)
Q Consensus 157 ~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
.+++++.+|+.++++++++||+|++..+++++++++..++++.++|+|||.+++.++..+..+..+.+.+.+..+++.++
T Consensus 160 ~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 160 KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 67899999999988888889999999999999999999999999999999999887665555555555555666678999
Q ss_pred HHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecCCCCCCCcccc
Q 022929 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQVT 288 (290)
Q Consensus 237 ~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~ 288 (290)
+.++|+++||+.+++++++..|+++++.++.+..+.|.++||.+|++|+|.|
T Consensus 240 l~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~ 291 (340)
T PLN02490 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLG 291 (340)
T ss_pred HHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccC
Confidence 9999999999999999999999999999999999999999999999999987
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=2e-23 Score=174.59 Aligned_cols=180 Identities=28% Similarity=0.380 Sum_probs=139.7
Q ss_pred HHHHhHHhHhhhcccCC--CcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 74 FWFYRFLSIVYDHVINP--GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
...|+..+..|+.+-.- ......+++.+++..... +|.+|||||||||.++..+++..+..+|+++|+|+.|++.|+
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 34555666666643311 112234455555555544 799999999999999999999988899999999999999999
Q ss_pred hhCCC---CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch-hHhh-----
Q 022929 152 QKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSR----- 222 (290)
Q Consensus 152 ~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~----- 222 (290)
++... .+++|+.+|++.+||++++||+|.+.+.+++++++++.|+++.|+|||||.+++.+...+.. +...
T Consensus 93 ~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 93 EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred HHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 98654 33889999999999999999999999999999999999999999999999999988766432 1111
Q ss_pred ---------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 223 ---------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 223 ---------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++......+++.+++.+.++++||+.+..+.+
T Consensus 173 ~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 173 YFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 11112224578999999999999998875543
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.91 E-value=1.3e-22 Score=174.75 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=138.0
Q ss_pred HHHHHHHhHHhHhhhcccCCC--cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHH
Q 022929 71 KEAFWFYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQL 147 (290)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~ 147 (290)
......|+..+..|+...... .....++..+++.... .++.+|||+|||+|.++..+++.. +..+|+|+|+|++|+
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 334567777777777532211 0112223333333333 368899999999999999998875 357999999999999
Q ss_pred HHHhhhCC------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh
Q 022929 148 AKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (290)
Q Consensus 148 ~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 221 (290)
+.|+++.. ..+++++++|+.++|+++++||+|++..++++++++..+++++.++|||||.+++.+...+.....
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~ 191 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT 191 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH
Confidence 99986632 247899999999999999899999999999999999999999999999999999988765432111
Q ss_pred hh-------------------------hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 222 RY-------------------------FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 222 ~~-------------------------~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.. +......+++.+++.++++++||+.++...+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 192 TSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 10 11122346799999999999999998887764
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=6.3e-24 Score=179.23 Aligned_cols=179 Identities=32% Similarity=0.474 Sum_probs=88.9
Q ss_pred HHHHhHHhHhhhcc---cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHH
Q 022929 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAK 149 (290)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~ 149 (290)
...|+..+..|+.+ +..+ ....++..+++.... .++.+|||+|||+|..+..+++.. +..+|+|+|+|++|++.
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g-~~~~wr~~~~~~~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFG-QDRRWRRKLIKLLGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp ----------------------------SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCc-HHHHHHHHHHhccCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 35666677777654 1111 112222233333333 378899999999999999999875 45799999999999999
Q ss_pred HhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh---
Q 022929 150 AKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--- 223 (290)
Q Consensus 150 a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--- 223 (290)
|+++.. ..+++++++|++++|+++++||+|++.+.+++++++.+.++++.|+|||||.+++.+...+.......
T Consensus 88 a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~ 167 (233)
T PF01209_consen 88 ARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYK 167 (233)
T ss_dssp HHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHH
T ss_pred HHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceee
Confidence 997733 34899999999999999999999999999999999999999999999999999998876654322111
Q ss_pred -----------------------hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 224 -----------------------FADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 224 -----------------------~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+......+++.+++.++|+++||+.++.+.+
T Consensus 168 ~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp H-----------------------------------------------------
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111223467899999999999998877664
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.88 E-value=3.5e-21 Score=172.00 Aligned_cols=189 Identities=22% Similarity=0.256 Sum_probs=141.3
Q ss_pred hhhHHHHHHHhHHhHhhhcccCCC----ccc------------HHHHHhhccccCC----CCCCCEEEEEcCccchhHHH
Q 022929 68 QHKKEAFWFYRFLSIVYDHVINPG----HWT------------EDMRDDALEPADL----SNRNMLVVDVGGGTGFTTLG 127 (290)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~~~l~~~~~----~~~~~~vLDiG~G~G~~~~~ 127 (290)
........+|+.....|+.+.... .|. ..+...+++.... ..++.+|||||||+|.++..
T Consensus 56 ~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 56 DLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred hHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 344556678877777776543221 111 2344445555443 13678999999999999999
Q ss_pred HHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccC
Q 022929 128 IVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203 (290)
Q Consensus 128 l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 203 (290)
+++.+ +.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+++|+++..++++++.++||
T Consensus 136 La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk 214 (340)
T PLN02244 136 LARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA 214 (340)
T ss_pred HHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC
Confidence 99986 6799999999999999887632 246899999999999988999999999999999999999999999999
Q ss_pred CCCEEEEEccCCCch---------hHhhhhHHHhh-----cCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 204 LGGKACIIGPVYPTF---------WLSRYFADVWM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 204 pgG~l~i~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
|||.+++.+...... ........... .+.+.+++.++++++||+.++++++...
T Consensus 215 pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 215 PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 999999986543211 11111111111 1347899999999999999999988754
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.88 E-value=8.9e-21 Score=160.91 Aligned_cols=181 Identities=28% Similarity=0.372 Sum_probs=135.4
Q ss_pred HHHHhHHhHhhhcccC--CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHH
Q 022929 74 FWFYRFLSIVYDHVIN--PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 150 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a 150 (290)
..+|+..+..|+..-. .-......+..++..+... ++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.+
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 3455555555554211 1112333444555555543 68899999999999999999875 467999999999999999
Q ss_pred hhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-----
Q 022929 151 KQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR----- 222 (290)
Q Consensus 151 ~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----- 222 (290)
+++.. ..+++++.+|..++++++++||+|++..++++.+++.++++++.++|+|||.+++.+...+.....+
T Consensus 87 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 166 (231)
T TIGR02752 87 RQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166 (231)
T ss_pred HHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHH
Confidence 87642 3468899999988888888899999999999999999999999999999999998876543321100
Q ss_pred ---------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 223 ---------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 223 ---------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
........+++.+++.++|+++||++++++.+.
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 167 YFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 011223356789999999999999999888764
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.87 E-value=4.5e-20 Score=151.90 Aligned_cols=226 Identities=32% Similarity=0.430 Sum_probs=152.1
Q ss_pred CCCCccccCCcCCCCCCccc-c-ccCCceeeeeeccc--ccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccH
Q 022929 20 PKGSSFLASDFHGKHIPKLS-L-IAKPRTVQSIKCSL--SATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTE 95 (290)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (290)
+.|+++.....+.++++.-. + ...++......|+- .+.+++...+++.+..-...++ .+...++.+....+ +
T Consensus 11 ~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~--~YD~mND~mSlGiH--R 86 (296)
T KOG1540|consen 11 PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAK--KYDIMNDAMSLGIH--R 86 (296)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHH--HHHHHHHHhhcchh--H
Confidence 34556666666666554311 1 12222223333332 1344444444444443332222 12333333333322 1
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC------CeEEEEeCCHHHHHHHhhhCC------CCCceEEE
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP------LKECKIVE 163 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~------~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~ 163 (290)
.+.+.++..+... ++.++||++||+|.++..+.+..+. .+|+++|+|++|++.++++.. ...+.++.
T Consensus 87 lWKd~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 87 LWKDMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 2233445555544 6799999999999999999988765 899999999999999988752 12488999
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch-hHhh--------------------
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSR-------------------- 222 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~-------------------- 222 (290)
+|++++||++++||..++.+.+.+++++++.+++++|+|||||++++.++..-.. .+..
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhh
Confidence 9999999999999999999999999999999999999999999999887654331 1111
Q ss_pred -----hhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 223 -----YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 223 -----~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++......+++.+++..+.+++||..+.
T Consensus 246 ~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 246 RKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1112223567899999999999999876
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=2.3e-20 Score=161.03 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=127.0
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~ 176 (290)
...+++.+... ++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++.. ..++.+...|+.+.++++++|
T Consensus 41 ~~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIELN-ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44556655543 78999999999999999998765 6799999999999999998754 346899999998888888899
Q ss_pred cEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCch--hHh---hhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 177 DRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTF--WLS---RYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 177 D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
|+|++..+++|++ +...+++++.++|||||.+++.+...... +.. .........+.+.+++.++|+++||+.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999888886 67789999999999999999987654321 111 1111112234688999999999999999
Q ss_pred EEEEcCcccc
Q 022929 250 QLKRIGPKWY 259 (290)
Q Consensus 250 ~~~~~~~~~~ 259 (290)
+.+.+++.+.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9998876543
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=1.2e-20 Score=165.96 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=118.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++... .+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999999875 78999999999999999876432 36899999998888777889999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH------hhhh----H---HHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL------SRYF----A---DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~------~~~~----~---~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+|++++..+++++.++|||||.+++.+........ ..+. . ..+..+++.+++..+|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999998765532100 0011 1 123346799999999999999999886
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
-+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 553
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=1.5e-19 Score=155.66 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=114.5
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.+++.+... ++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.|+++ +++++.+|+.+++ ++++||+|
T Consensus 20 ~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 20 DLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CCcEEEcChhhCC-CCCCceEE
Confidence 344444433 67899999999999999999998888999999999999999853 5789999998764 45679999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc---hhHhh------hhHHH--------hhcCCCHHHHHHHHH
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSR------YFADV--------WMLFPKEEEYIEWFQ 242 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~------~~~~~--------~~~~~~~~~~~~ll~ 242 (290)
++..+++|++++..+++++.++|||||.+++..+.... ..... .+... ...+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987543211 11000 01110 112357899999999
Q ss_pred HCCCcEEEEEE
Q 022929 243 KAGFKDVQLKR 253 (290)
Q Consensus 243 ~aGf~~v~~~~ 253 (290)
++||++...+.
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998655443
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=3.4e-20 Score=152.65 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=118.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc--eEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v--~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||||||-|.++..+++. +..|+|+|+++++++.|+......++ ++.+..++++....++||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999998 79999999999999999988766554 4777777777666678999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh-h---------hhH---HHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-R---------YFA---DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~---------~~~---~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.++++.+++.+.+++||||.+++++.+....... . ... ..+..+..++++..++..+|+.+.+..-+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 9999999999999999999999998875421110 0 000 11234567899999999999998887666
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
..
T Consensus 217 ~y 218 (243)
T COG2227 217 TY 218 (243)
T ss_pred Ee
Confidence 43
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.84 E-value=1.2e-19 Score=169.78 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=123.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|+++.. ..++++..+|+...++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 377899999999999999999876 6799999999999999987753 2368999999988888788899999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCc----hhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPT----FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
|++++..+++++.++|+|||.+++.+..... ......+......+++.+++.++++++||++++++.+..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~ 420 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFL 420 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecchHHHH
Confidence 9999999999999999999999998765432 111222222222456899999999999999999888765544
No 13
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.84 E-value=8.1e-19 Score=149.35 Aligned_cols=181 Identities=29% Similarity=0.405 Sum_probs=133.8
Q ss_pred HHHHhHHhHhhhcc---cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHH
Q 022929 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAK 149 (290)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~ 149 (290)
..+|+..+..|+.. .... .....+..++..+... ++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 14 AEMFDSIAPKYDLMNDLLSFG-LHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHhhhhHHHHHHHHhcC-CcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 34566666666532 1111 1223344444444443 678999999999999999999875 5899999999999999
Q ss_pred HhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh---
Q 022929 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR--- 222 (290)
Q Consensus 150 a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~--- 222 (290)
++++... .++.+...|+.+.++..++||+|++..++++.+++..+++++.++|+|||.+++.+...+......
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 171 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAY 171 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHH
Confidence 9987542 468899999988777777899999999999999999999999999999999988765443211000
Q ss_pred -----------------------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 223 -----------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 223 -----------------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.+......+++.+++.++|+++||+.+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 228 (239)
T PRK00216 172 DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTG 228 (239)
T ss_pred HHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeec
Confidence 0011113456889999999999999988887653
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=3.6e-19 Score=157.59 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=133.2
Q ss_pred CcccHHHHHhhc-cccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh--h-CC-CCCceEEEcC
Q 022929 91 GHWTEDMRDDAL-EPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--K-EP-LKECKIVEGD 165 (290)
Q Consensus 91 ~~~~~~~~~~~l-~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~--~-~~-~~~v~~~~~d 165 (290)
.+|...+....+ ..+... ++.+|||||||+|.++..++... ...|+|+|+|+.++..++. + .. ..++.++.+|
T Consensus 103 ~ew~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 103 TEWRSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred ceehHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 345444443332 233322 67899999999999999999884 3479999999998875432 2 21 3478999999
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch------hHhhhhHHHh--hcCCCHHHH
Q 022929 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVW--MLFPKEEEY 237 (290)
Q Consensus 166 ~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~~~~~~--~~~~~~~~~ 237 (290)
++++++ +++||+|+|..+++|..++..+++++.+.|+|||.+++.+...... ....+ .... ...++.+++
T Consensus 181 ~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~~~l 258 (322)
T PRK15068 181 IEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSVPAL 258 (322)
T ss_pred HHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCHHHH
Confidence 999888 6679999999999999999999999999999999998875432211 11111 1111 123588999
Q ss_pred HHHHHHCCCcEEEEEEcCcccccccccccceeeeE-------EEEecCCCCCC-Cccc
Q 022929 238 IEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCS-------VTGVKPASGDS-PLQV 287 (290)
Q Consensus 238 ~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~a~k~~~~~~-~~~~ 287 (290)
.++|+++||+.+++.....+.....+...-+-..+ .-..|.++|.| |.++
T Consensus 259 ~~~L~~aGF~~i~~~~~~~t~~~eqr~t~w~~~~sl~~fld~~~~~~t~eg~pap~r~ 316 (322)
T PRK15068 259 KNWLERAGFKDVRIVDVSVTTTEEQRKTEWMTTESLADFLDPNDPSKTIEGYPAPKRA 316 (322)
T ss_pred HHHHHHcCCceEEEEeCCCCCccccccccCcccCcHhhcCCCCCCCCcccCCCCccEE
Confidence 99999999999999887765443333322221111 12256777765 5544
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.82 E-value=3.5e-19 Score=153.35 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=113.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC-CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~-~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++... .+++++++|+.+++ +.+++||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5689999999999999999987 68999999999999999887432 46789999987653 55678999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh----HH----H---------hhcCCCHHHHHHHHHHCCCc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF----AD----V---------WMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~~----~---------~~~~~~~~~~~~ll~~aGf~ 247 (290)
++|++++..+++++.++|||||.+++.............+ .. . .....+.+++.++|+++||+
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 9999999999999999999999999876554322111100 00 0 01235789999999999999
Q ss_pred EEEEEEc
Q 022929 248 DVQLKRI 254 (290)
Q Consensus 248 ~v~~~~~ 254 (290)
+++..-+
T Consensus 202 ~~~~~gi 208 (255)
T PRK11036 202 IMGKTGV 208 (255)
T ss_pred EeeeeeE
Confidence 8865543
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.81 E-value=7.1e-20 Score=146.26 Aligned_cols=133 Identities=29% Similarity=0.369 Sum_probs=104.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.+|||||||+|.++..+++. +.+++|+|+++.+++. .+......+....+.++++||+|+|..+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 37899999999999999999777 5699999999999988 23334444333444567789999999999999
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh-------hHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-------FADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+++..+++++.++|||||.+++.++.......... ....+..+++.++|.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887642111110 101223467999999999999999875
No 17
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.81 E-value=3.5e-19 Score=150.43 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=119.8
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++|||||||+|..+..+++.+++.+++|+|+|+++++.++++.. ..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999999998877899999999999999988743 24578999998665654 46999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
+++...+++++.++|+|||.+++.+......... ........+.+..+|.++++++||++++...++.++...+|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~ 154 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLY 154 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-cccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhcc
Confidence 9999999999999999999999987643211000 00011122568899999999999999999998877654433
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=2e-19 Score=130.61 Aligned_cols=95 Identities=37% Similarity=0.571 Sum_probs=86.8
Q ss_pred EEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHH
Q 022929 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 194 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~ 194 (290)
||+|||+|..+..+++. ++.+++++|+++++++.++++....++.+...|+.++|+++++||+|++.++++|++++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999999 78999999999999999999988778889999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCEEEE
Q 022929 195 IREAYRVLKLGGKACI 210 (290)
Q Consensus 195 l~~~~~~L~pgG~l~i 210 (290)
++++.|+|||||.+++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999975
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=2.8e-18 Score=147.41 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=118.5
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~ 174 (290)
......+++.+.. .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++.++++++
T Consensus 28 ~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCC
Confidence 3344455555543 25689999999999999988875 6899999999999999998754 35688999999888888
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hhH-----HHhhcCCCHHHHHHHHHHCCCcE
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YFA-----DVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
+||+|+++.++++.+++..++.++.++|+|||.+++.++......... .+. .....+.+.+++.+++...|++.
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 999999999999999999999999999999999999887665433221 111 11234678999999999988863
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.80 E-value=2.6e-18 Score=144.95 Aligned_cols=170 Identities=21% Similarity=0.178 Sum_probs=120.9
Q ss_pred HHHHHhHHhHhhhcccC------CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHH
Q 022929 73 AFWFYRFLSIVYDHVIN------PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146 (290)
Q Consensus 73 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~ 146 (290)
....|+..+..|+.... ...|...+...+..... ++.+|||+|||+|.++..+++.. +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~---~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCG---RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcC---CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34667777778875421 11233333333322222 46899999999999999999886 5799999999999
Q ss_pred HHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-------
Q 022929 147 LAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW------- 219 (290)
Q Consensus 147 ~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------- 219 (290)
++.|+++. .++++|++++|+++++||+|++..+++|++++++.++++.++|||... +.+...+...
T Consensus 87 l~~a~~~~-----~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~--ile~~~p~~~~~~~~~~ 159 (226)
T PRK05785 87 LKMNLVAD-----DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVG--FIAMGKPDNVIKRKYLS 159 (226)
T ss_pred HHHHHhcc-----ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceE--EEEeCCCCcHHHHHHHH
Confidence 99998642 467899999999999999999999999999999999999999999421 2222222111
Q ss_pred -------------------HhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 220 -------------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 220 -------------------~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...+.......+++.+++.++|+++| ..++.+.+
T Consensus 160 ~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~ 212 (226)
T PRK05785 160 FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEER 212 (226)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEc
Confidence 01112223345678999999999974 55666554
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.80 E-value=1.2e-18 Score=152.68 Aligned_cols=173 Identities=19% Similarity=0.249 Sum_probs=125.0
Q ss_pred ccCCCcccHHHHHh-hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhC-CCCCceE
Q 022929 87 VINPGHWTEDMRDD-ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKE-PLKECKI 161 (290)
Q Consensus 87 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~-~~~~v~~ 161 (290)
...+.+|...+... ++..+... ++++|||||||+|.++..++... ...|+|+|+|+.++..++ +.. ...++.+
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~ 175 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAIL 175 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEE
Confidence 34445666665543 44444433 68999999999999998888773 357999999999887543 222 2346788
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch------hHhhh--hHHHhhcCCC
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRY--FADVWMLFPK 233 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~--~~~~~~~~~~ 233 (290)
...++.+++... +||+|+|..+++|.+++...+++++++|+|||.+++.+...... ...++ +... ...++
T Consensus 176 ~~~~ie~lp~~~-~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-~flpS 253 (314)
T TIGR00452 176 EPLGIEQLHELY-AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-YFIPS 253 (314)
T ss_pred EECCHHHCCCCC-CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc-ccCCC
Confidence 888888877544 69999999999999999999999999999999999875432110 01111 1111 12468
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcccccccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
..++.++|+++||+.+++...........+
T Consensus 254 ~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr 283 (314)
T TIGR00452 254 VSALKNWLEKVGFENFRILDVLKTTPEEQR 283 (314)
T ss_pred HHHHHHHHHHCCCeEEEEEeccCCCHHHhh
Confidence 999999999999999999887665443333
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.80 E-value=3.9e-18 Score=145.00 Aligned_cols=161 Identities=25% Similarity=0.336 Sum_probs=124.3
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhh--CCCCCceEEEcCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLP 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~v~~~~~d~~~l~ 170 (290)
...++..++...... ++.+|||+|||+|.++..+++.+ +..+++++|+|+.+++.++++ ....++.+...|+..++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 4 FRRYRARTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 344555555655553 78899999999999999999887 568999999999999999887 23356889999998888
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch--------hHhhhhHHHh---hcCCCHHHHHH
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF--------WLSRYFADVW---MLFPKEEEYIE 239 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~ 239 (290)
+.+++||+|++..+++|++++..+++++.++|+|||.+++.++..... .......... ....+..++.+
T Consensus 83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPG 162 (241)
T ss_pred CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 878889999999999999999999999999999999999887543211 1111111111 12234678999
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
+|+++||+.++++...
T Consensus 163 ~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 163 LFREAGLTDIEVEPYT 178 (241)
T ss_pred HHHHcCCCceeEEEEE
Confidence 9999999988776643
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=4.6e-19 Score=140.69 Aligned_cols=135 Identities=27% Similarity=0.461 Sum_probs=106.9
Q ss_pred CCCEEEEEcCccchhHHHHH-hhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.++..++ +..++.+++|+|+|+++++.|+++ ....+++|.++|+.+++ ++ ++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 67899999999999999999 456789999999999999999985 34458999999998877 54 6799999999
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh------hhhHHHhhcCC---CHHHHHHHHHHCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFADVWMLFP---KEEEYIEWFQKAG 245 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~ll~~aG 245 (290)
+++++.++..+++++.++|+++|.+++.+......... ......+.... ..++|..+|+++|
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 99999999999999999999999999987762211111 11112222222 6788888998887
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.79 E-value=7.6e-19 Score=151.59 Aligned_cols=161 Identities=22% Similarity=0.196 Sum_probs=113.6
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~ 172 (290)
..+.+++.+... +|.+|||||||.|.++..+++.+ +++|+|+++|++..+.++++.. .+++++...|..+++.
T Consensus 50 k~~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 345666777664 99999999999999999999998 7899999999999999987643 2458899999877654
Q ss_pred CCCccEEEecCcccccC--CHHHHHHHHHhccCCCCEEEEEccCCCchh-----------HhhhhHHHhhcCCCHHHHHH
Q 022929 173 TDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFW-----------LSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 239 (290)
+||.|++..+++|+. +...+++++.++|||||.+++......... +.+.+-. ....++..++..
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~ 203 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILR 203 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHH
Confidence 699999999999994 567999999999999999998654433211 1111111 113467899999
Q ss_pred HHHHCCCcEEEEEEcCcccccccc
Q 022929 240 WFQKAGFKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~~~~~~~~~ 263 (290)
.++++||++.+++.++.+|.....
T Consensus 204 ~~~~~~l~v~~~~~~~~hY~~Tl~ 227 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLGRHYARTLR 227 (273)
T ss_dssp HHHHTT-EEEEEEE-HHHHHHHHH
T ss_pred HHhcCCEEEEEEEEcCcCHHHHHH
Confidence 999999999999999888765443
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.79 E-value=9.6e-18 Score=141.21 Aligned_cols=158 Identities=30% Similarity=0.409 Sum_probs=123.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCc
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~ 176 (290)
..++...... ++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. ..++.+..+|+.+.++..++|
T Consensus 29 ~~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 29 RRAVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3444444332 6789999999999999999998765 699999999999999988754 346889999998888777789
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh---------Hhh-----------------hhHHHhhc
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW---------LSR-----------------YFADVWML 230 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~ 230 (290)
|+|++..++++.+++..+++++.+.|+|||.+++.+...+... ... .....+..
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRA 187 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHh
Confidence 9999999999999999999999999999999998765432210 000 01111234
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 231 FPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+++.++|.++|+++||++++++.+...
T Consensus 188 ~~~~~~~~~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 188 FPSQEELAAMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred CCCHHHHHHHHHHcCCccceeeeeecc
Confidence 568899999999999999988876543
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.79 E-value=1.6e-17 Score=144.47 Aligned_cols=146 Identities=29% Similarity=0.428 Sum_probs=114.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|+++. ...+++++.+|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 378999999999999888777664 3468999999999999999863 235788999999998888888999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH--HHh----hcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA--DVW----MLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+++.++...+++++.++|||||.+++.+............. ..+ ....+.+++.++|+++||..+++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 99999999999999999999999999765432211111100 111 12357889999999999998877554
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.78 E-value=3.8e-18 Score=145.14 Aligned_cols=142 Identities=27% Similarity=0.341 Sum_probs=119.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
.+.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.. .++.++.+|+.+.++++++||+|++..+++|..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888889999999999999988765 478899999998888888899999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++..+++++.++|+|||.+++.++......... ........+.+.+++.+++.++ |..+.+..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 999999999999999999999877665432211 1222334567899999999998 88766544
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=2.2e-17 Score=142.42 Aligned_cols=148 Identities=24% Similarity=0.304 Sum_probs=113.5
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCcc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D 177 (290)
...++..+... ++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.++++. .+++++.+|+..+. +..+||
T Consensus 20 ~~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCcc
Confidence 33444544443 678999999999999999999888899999999999999999875 36889999997754 345799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh---------hH----HH---hhcCCCHHHHHHHH
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY---------FA----DV---WMLFPKEEEYIEWF 241 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~---------~~----~~---~~~~~~~~~~~~ll 241 (290)
+|++..+++|+++...+++++.++|+|||.+++..+.......... +. .. ...+.+..++.+++
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDAL 175 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999887543211000000 00 00 11235778899999
Q ss_pred HHCCCcEE
Q 022929 242 QKAGFKDV 249 (290)
Q Consensus 242 ~~aGf~~v 249 (290)
.++|+.+.
T Consensus 176 ~~~g~~v~ 183 (258)
T PRK01683 176 APAACRVD 183 (258)
T ss_pred HhCCCcee
Confidence 99998753
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.2e-17 Score=142.40 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=126.6
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~ 173 (290)
.+.+++.+.+. +|++|||||||.|.+++.+++.+ +.+|+|+++|+++.+.++++.. ..++++...|..+++
T Consensus 61 ~~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 61 LDLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 44556666665 99999999999999999999998 7999999999999999998643 236888899988764
Q ss_pred CCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhH---hhhhHH---HhhcCCCHHHHHHHHHHCC
Q 022929 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL---SRYFAD---VWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~ll~~aG 245 (290)
+.||.|+|..+++|+.. ...+++.+.++|+|||.+++-+...+.... ..++.. .....++..++.+...++|
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcC
Confidence 33999999999999976 789999999999999999886544333111 111111 0123467899999999999
Q ss_pred CcEEEEEEcCcccccccc
Q 022929 246 FKDVQLKRIGPKWYRGVR 263 (290)
Q Consensus 246 f~~v~~~~~~~~~~~~~~ 263 (290)
|.+.+++.++.++.....
T Consensus 216 ~~v~~~~~~~~hYa~Tl~ 233 (283)
T COG2230 216 FVVLDVESLRPHYARTLR 233 (283)
T ss_pred cEEehHhhhcHHHHHHHH
Confidence 999999999988775543
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=8.3e-18 Score=144.00 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=106.3
Q ss_pred CCCEEEEEcCccchhHHHHHhh--CCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~--~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 6789999999999999888873 467999999999999999998753 23689999999887764 399999999
Q ss_pred cccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc-hhHhh----hhH--------------H---H---hhcCCCHHH
Q 022929 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FWLSR----YFA--------------D---V---WMLFPKEEE 236 (290)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~----~~~--------------~---~---~~~~~~~~~ 236 (290)
+++++++. ..+++++.+.|||||.+++.+..... ..... ... . . .....+.++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 99998753 47999999999999999998744221 00000 000 0 0 011247899
Q ss_pred HHHHHHHCCCcEE
Q 022929 237 YIEWFQKAGFKDV 249 (290)
Q Consensus 237 ~~~ll~~aGf~~v 249 (290)
..++|+++||+.+
T Consensus 214 ~~~~L~~aGF~~v 226 (247)
T PRK15451 214 HKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHcCchhH
Confidence 9999999999753
No 31
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.76 E-value=7.3e-18 Score=143.70 Aligned_cols=200 Identities=22% Similarity=0.291 Sum_probs=136.3
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh---hhCCCCC-ceEE
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKE-CKIV 162 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~---~~~~~~~-v~~~ 162 (290)
+.++.+|...+....+...-..-.+++|||||||+|.++..++.. +...|+|+|.+.......+ +...... +..+
T Consensus 92 i~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 92 IHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred EeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 345556766665555543221227899999999999999999988 3567999999987655432 3332222 3333
Q ss_pred EcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchh------Hhhh--hHHHhhcCCCH
Q 022929 163 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW------LSRY--FADVWMLFPKE 234 (290)
Q Consensus 163 ~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~--~~~~~~~~~~~ 234 (290)
...++++|. .+.||+|+|..|+.|..+|-..|++++..|+|||.+++.+...+... ..++ +.+.| ..+|.
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~-FiPs~ 248 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW-FIPSV 248 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE-EeCCH
Confidence 356678776 56799999999999999999999999999999999998765433211 1111 11111 23689
Q ss_pred HHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeE----E---EEecCCCCCCCccccc
Q 022929 235 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCS----V---TGVKPASGDSPLQVTI 289 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~----~---~a~k~~~~~~~~~~~~ 289 (290)
..+.++++++||+.+++.....+.....+.+.-+-+-+ + -..|.++|.|.=++++
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPAP~Ra~ 310 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPAPKRAY 310 (315)
T ss_pred HHHHHHHHHcCCceEEEecCccCCHHHhccCCCcCcccHHHhcCCCCCCCcccCCCCceEEE
Confidence 99999999999999999888776666665543332111 1 1246777765444443
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.75 E-value=1.6e-17 Score=137.44 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=103.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... .++++...|+.+++++ ++||+|++..+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 5689999999999999999987 68999999999999999876432 3578888999877664 4699999999998
Q ss_pred ccC--CHHHHHHHHHhccCCCCEEEEEccCCC-chhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 187 ~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+++ +...+++++.++|+|||.+++...... .... .......++.+++.+.++ ||++++...
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~----~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----TVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC----CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 876 346899999999999999765432211 1100 001112357889999887 999888754
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=2.1e-17 Score=140.98 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=108.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|..+..+++.. |+.+++|+|+|+.+++.|+++.. ..+++++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 67899999999999999998864 67899999999999999987743 23689999999888765 389999999
Q ss_pred cccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch-hHhhhhHHH------------------------hhcCCCHHH
Q 022929 184 SIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADV------------------------WMLFPKEEE 236 (290)
Q Consensus 184 ~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~~~------------------------~~~~~~~~~ 236 (290)
+++|+++ ...+++++.++|+|||.+++.+...... .....+... .....+.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 9999864 4679999999999999999987654321 111100000 112458899
Q ss_pred HHHHHHHCCCcEEE
Q 022929 237 YIEWFQKAGFKDVQ 250 (290)
Q Consensus 237 ~~~ll~~aGf~~v~ 250 (290)
+.++++++||..++
T Consensus 211 ~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 211 HKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHcCCchHH
Confidence 99999999997443
No 34
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.75 E-value=1.1e-18 Score=156.35 Aligned_cols=181 Identities=19% Similarity=0.120 Sum_probs=139.5
Q ss_pred ccccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC
Q 022929 53 SLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV 132 (290)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~ 132 (290)
.+.+...+....++.+++.+...||+....+....+.|++.++.+.+.+++.+. ++.+|||+|||+|.++..++...
T Consensus 197 ~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~ 273 (423)
T PRK14966 197 RADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALER 273 (423)
T ss_pred HHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhC
Confidence 344444555567788999999999998888888999999999999998887654 45799999999999999999887
Q ss_pred CCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCC-CCCCccEEEecCccc-------------ccC-------
Q 022929 133 DAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPF-PTDYADRYVSAGSIE-------------YWP------- 189 (290)
Q Consensus 133 ~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l~-------------~~~------- 189 (290)
++.+++++|+|+++++.|+++... .+++++++|+.+..+ ..++||+|+|+--.. +.|
T Consensus 274 p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG 353 (423)
T PRK14966 274 PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF 353 (423)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence 889999999999999999988542 358899999865332 235799999953210 100
Q ss_pred -C----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 -D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 -~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+ .+.+++.+.+.|+|||.+++..... ..+.+.+++++.||..+++..
T Consensus 354 ~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-----------------Q~e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 354 SDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-----------------QGAAVRGVLAENGFSGVETLP 405 (423)
T ss_pred CchHHHHHHHHHHHHHhcCCCcEEEEEECcc-----------------HHHHHHHHHHHCCCcEEEEEE
Confidence 1 2367788889999999987754221 357889999999998766643
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=5e-18 Score=127.49 Aligned_cols=102 Identities=26% Similarity=0.398 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCC-CCCCCCCCCccEEEecC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDA-EDLPFPTDYADRYVSAG- 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~- 183 (290)
|+.+|||||||+|.++..+++..++.+++|+|+|+++++.++++. ...++++++.|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999777999999999999999999886 346899999999 444443 3499999999
Q ss_pred ccccc---CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYW---PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++++. ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55534 334689999999999999999875
No 36
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.74 E-value=1.3e-18 Score=162.62 Aligned_cols=211 Identities=19% Similarity=0.167 Sum_probs=154.3
Q ss_pred ccccCCcCCCCCCccccccCCceeeeeecccccCCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 24 SFLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
.++.....+.+...+.++............+.....+....++.+|+.+..+||+....+...+++|++.++.+++.++.
T Consensus 29 ~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~ 108 (506)
T PRK01544 29 RILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQ 108 (506)
T ss_pred HHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHH
Confidence 34455555555555555444433333334455455555667899999999999999999999999999999999998876
Q ss_pred ccCC-----------------------CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----
Q 022929 104 PADL-----------------------SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---- 156 (290)
Q Consensus 104 ~~~~-----------------------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---- 156 (290)
.+.. ..++.+|||+|||+|.++..++...|+.+++++|+|+.+++.|+++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~ 188 (506)
T PRK01544 109 CHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT 188 (506)
T ss_pred HhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc
Confidence 5320 1134689999999999999999888889999999999999999987432
Q ss_pred CCceEEEcCCCCCCCCCCCccEEEecC--------------cccccCC------------HHHHHHHHHhccCCCCEEEE
Q 022929 157 KECKIVEGDAEDLPFPTDYADRYVSAG--------------SIEYWPD------------PQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 157 ~~v~~~~~d~~~l~~~~~~~D~i~~~~--------------~l~~~~~------------~~~~l~~~~~~L~pgG~l~i 210 (290)
.++.++.+|+.+ .++.++||+|+++- +..|.|. ...+++.+.++|+|||.+++
T Consensus 189 ~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 189 DRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred cceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 357889999754 23445799999942 1222221 23578889999999999987
Q ss_pred EccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 211 IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
... . ...+.+.+++.+.||..+++.
T Consensus 268 Eig-~----------------~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 268 EIG-F----------------KQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred EEC-C----------------chHHHHHHHHHhcCCCceEEE
Confidence 532 1 135678899999999876654
No 37
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=138.54 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=109.7
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----C----CceEEEcCCCCCCCCCCCccEEEe
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~----~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
|.+|||+|||.|.++..|++. +..|+|+|+++++++.|++.... . ++++...|++.+. +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 478999999999999999999 89999999999999999987321 1 2455666665542 34999999
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc------hhHhhhhHH-------HhhcCCCHHHHHHHHHHCCCcE
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
..+++|..+++.+++.+.+.|||||.+++.+..... ....+.... .|..|.++.++..++..+|+++
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 222222222 3456789999999999999987
Q ss_pred EEEEE
Q 022929 249 VQLKR 253 (290)
Q Consensus 249 v~~~~ 253 (290)
..+.-
T Consensus 245 ~~v~G 249 (282)
T KOG1270|consen 245 NDVVG 249 (282)
T ss_pred hhhhc
Confidence 66543
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.74 E-value=2.6e-18 Score=150.06 Aligned_cols=176 Identities=21% Similarity=0.229 Sum_probs=134.1
Q ss_pred CCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeE
Q 022929 58 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNV 137 (290)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v 137 (290)
..+.....+.+++.+..+||+....+...++.|++.++.+...++.......+..+|||+|||+|.++..++...++.++
T Consensus 62 ~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v 141 (284)
T TIGR00536 62 VLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEV 141 (284)
T ss_pred HHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEE
Confidence 33334447888898888999887778888999999999999988765432223379999999999999999999888899
Q ss_pred EEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEec-------------CcccccC-----------
Q 022929 138 TILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP----------- 189 (290)
Q Consensus 138 ~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~-------------~~l~~~~----------- 189 (290)
+++|+|+.+++.|+++... .+++++.+|+.+ +++..+||+|+++ .+..|.|
T Consensus 142 ~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 142 IAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHH
Confidence 9999999999999987432 248899999866 4444479999995 2333333
Q ss_pred -CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH-HCCCcEEEE
Q 022929 190 -DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ-KAGFKDVQL 251 (290)
Q Consensus 190 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~aGf~~v~~ 251 (290)
....+++++.++|+|||.+++..... ..+.+.+++. +.||..+++
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 23578899999999999998865322 2356777777 468876555
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.73 E-value=5.3e-16 Score=126.65 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=102.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|..+..++...++.+|+++|+|+++++.|+++.. ..+++++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 5899999999999999999988788999999999999999987632 2358999999988776 66899999875
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
..+.+.+++.+.++|+|||.+++..... ...++.++.+..|+.+..+....
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 3567889999999999999999875432 24567788888899877776653
No 40
>PRK06202 hypothetical protein; Provisional
Probab=99.73 E-value=1.1e-16 Score=135.89 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=109.2
Q ss_pred CCCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++. .++.+++|+|+|+++++.|+++....++.+...+...++..+++||+|+++.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 6789999999999998888753 234699999999999999998876667888888777777667789999999999
Q ss_pred cccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhh----------------hHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 186 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
||++++ ..+++++.++++ |.+++.+........... ....+..+++.+++.+++++ ||+
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~ 216 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWR 216 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCe
Confidence 999886 369999999998 666666655442111000 01223356799999999999 998
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
+.....+.
T Consensus 217 ~~~~~~~~ 224 (232)
T PRK06202 217 VERQWPFR 224 (232)
T ss_pred EEecccee
Confidence 77665443
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=2.9e-17 Score=135.64 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++.+...|+...+++ ++||+|++..++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 4679999999999999999987 689999999999999987664332 356677787665554 46999999999998
Q ss_pred cCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++. ...+++++.++|+|||.+++.+......... .......++.+++.+++. +|+++.....
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~---~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC---HMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC---CCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 853 4589999999999999976654322111000 011123458899999987 6988888744
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.71 E-value=2.4e-16 Score=133.96 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++... .++++...|..+.+ ..+++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36889999999999999988886 67899999999999999876432 24677778776654 344679999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHh------hhh-------HHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++.+++..+++.+.++|+|||.+++..+........ ... ...+..+++.++|.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543221100 000 0112345688999999999999999886
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
...
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 544
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.71 E-value=3.8e-16 Score=137.21 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------CCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++.|...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 68999999999999999987532 2467888887654 357999999
Q ss_pred cCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh--------hcCCCHHHHHHHHHHCCCcEEEE
Q 022929 182 AGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
..+++|+++.. .+++.+.+ +.++|.++...+..............+ ..+.+.++++++++++||++...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999887643 46666664 455555433222211111111111111 12347899999999999998887
Q ss_pred EEcCcccc
Q 022929 252 KRIGPKWY 259 (290)
Q Consensus 252 ~~~~~~~~ 259 (290)
+.....+|
T Consensus 298 ~~~~~~~y 305 (315)
T PLN02585 298 EMTATQFY 305 (315)
T ss_pred EEeeccee
Confidence 76665544
No 44
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.71 E-value=1.1e-17 Score=145.81 Aligned_cols=209 Identities=17% Similarity=0.152 Sum_probs=145.0
Q ss_pred cccCCcCCCCCCccccccCCceeeeeecccccCCCCCC-chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 25 FLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPAS-QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
++.....+.+...+.++............+.....+.. ..++.+|+.+..+|++....+...++.|++.++.+....+.
T Consensus 35 ~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~ 114 (284)
T TIGR03533 35 YLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFA 114 (284)
T ss_pred HHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHH
Confidence 33444444444444444333332222223333333333 45688999999999998888888999999999888877765
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEE
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
......++.+|||+|||+|.++..+++..++.+++++|+|+.+++.|+++... .+++++.+|+.+ ++++++||+|
T Consensus 115 ~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~I 193 (284)
T TIGR03533 115 PWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLI 193 (284)
T ss_pred HHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEE
Confidence 32111245799999999999999999998888999999999999999987532 358899999854 3345579999
Q ss_pred EecCc-------------ccccCC------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 180 VSAGS-------------IEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~-------------l~~~~~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+++-- +.+.+. ...+++.+.++|+|||.+++.... +.
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~------------------~~ 255 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN------------------SM 255 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------------CH
Confidence 98511 111111 246789999999999999876431 23
Q ss_pred HHHHHHHHHCCCcEEEEE
Q 022929 235 EEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~ 252 (290)
+.+.+++.++||.-....
T Consensus 256 ~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 256 EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred HHHHHHHHhCCCceeeec
Confidence 567888888998755443
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.71 E-value=6.2e-16 Score=136.62 Aligned_cols=148 Identities=22% Similarity=0.307 Sum_probs=111.6
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCc
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~ 176 (290)
+++.... +++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++.. .++++++.+|+.+.+++. +
T Consensus 141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--C
Confidence 3344433 3678999999999999999999999999999998 789998887643 246899999997656543 7
Q ss_pred cEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCch---hHhhhhHH--------HhhcCCCHHHHHHHHHH
Q 022929 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYFAD--------VWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~ll~~ 243 (290)
|+|++.+++|++++. ..+++++.+.|+|||++++.+...... ........ ....+.+.+++.++|++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 999999999988765 479999999999999999987643221 11111110 01123457999999999
Q ss_pred CCCcEEEEE
Q 022929 244 AGFKDVQLK 252 (290)
Q Consensus 244 aGf~~v~~~ 252 (290)
+||+.+++.
T Consensus 297 aGf~~v~~~ 305 (306)
T TIGR02716 297 LGYKDVTMV 305 (306)
T ss_pred cCCCeeEec
Confidence 999977653
No 46
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.70 E-value=4.2e-16 Score=131.19 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred HHHhhccccCC-CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC
Q 022929 97 MRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (290)
Q Consensus 97 ~~~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~ 171 (290)
++..++..+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|++++..|+++... .++++.+.|+..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 33444444331 236789999999999999999886 67999999999999999887432 36889999998765
Q ss_pred CCCCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh--------hcCCCHHHHHHHH
Q 022929 172 PTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWF 241 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll 241 (290)
++||+|++..+++|++. ...+++++.+++++++.+.+.. ..............+ ..+++.+++.+++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP-KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERAL 194 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC-CchHHHHHHHHHhhCcCcccccceEEecHHHHHHHH
Confidence 56999999999988864 4578899999888765554432 211111111111111 1235889999999
Q ss_pred HHCCCcEEEEEEcCcccccc
Q 022929 242 QKAGFKDVQLKRIGPKWYRG 261 (290)
Q Consensus 242 ~~aGf~~v~~~~~~~~~~~~ 261 (290)
+++||+++........++.+
T Consensus 195 ~~~Gf~v~~~~~~~~~~~~~ 214 (219)
T TIGR02021 195 GELGWKIVREGLVSTGFYNS 214 (219)
T ss_pred HHcCceeeeeecccccchhh
Confidence 99999999998777665543
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=2.4e-15 Score=123.42 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=105.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
+.++..++..+... ++.+|||+|||+|.++..+++..++.+++++|+|+.+++.++++.. ..+++++.+|... ++
T Consensus 17 ~~~r~~~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 17 EEVRALALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc
Confidence 34444455555543 7789999999999999999998888899999999999999987642 2468888888743 33
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+ ++||+|++..... ....+++.+.+.|+|||.+++..... .+.+++.+++++.||+.+++
T Consensus 95 ~-~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 95 P-GKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred C-cCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcceE
Confidence 3 4699999876544 35678999999999999998854321 14567889999999987776
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
..+
T Consensus 155 ~~~ 157 (187)
T PRK08287 155 VQL 157 (187)
T ss_pred EEE
Confidence 554
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.69 E-value=3.2e-16 Score=141.83 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=115.7
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEE
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~ 180 (290)
+++.+.. .++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++....++++...|..++ +++||+|+
T Consensus 159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIV 233 (383)
T ss_pred HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEE
Confidence 3444444 378999999999999999999875 679999999999999999887544578888888664 35799999
Q ss_pred ecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch------hHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 181 SAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 181 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+..+++|+.. ...+++++.++|||||.+++.+...... +..+++. ....+++.+++.+.++ .||.+.+++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yif-p~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIF-PNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeec-CCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 9999999854 4689999999999999999976543321 1111100 0122457788877766 689999998
Q ss_pred EcCcccccc
Q 022929 253 RIGPKWYRG 261 (290)
Q Consensus 253 ~~~~~~~~~ 261 (290)
.++.+|...
T Consensus 312 ~~~~hy~~T 320 (383)
T PRK11705 312 NFGADYDRT 320 (383)
T ss_pred cChhhHHHH
Confidence 888666533
No 49
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=6.8e-17 Score=140.63 Aligned_cols=170 Identities=28% Similarity=0.269 Sum_probs=127.8
Q ss_pred chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC
Q 022929 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (290)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 142 (290)
...+.++..+...|++....+...++.|++.++.+.+.++..... .++.+|||+|||+|.++..++...+..+++++|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi 140 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDI 140 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC
Confidence 334556666666777766666677888999999998888755433 3678999999999999999999988899999999
Q ss_pred CHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc--------------ccC------------CHHH
Q 022929 143 SPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE--------------YWP------------DPQR 193 (290)
Q Consensus 143 s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~--------------~~~------------~~~~ 193 (290)
|+.+++.++++.. ..++.++.+|+.+ ++..++||+|+++--.. +.+ ....
T Consensus 141 s~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~ 219 (275)
T PRK09328 141 SPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRR 219 (275)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHH
Confidence 9999999998743 3468999999865 33356799999852111 111 1246
Q ss_pred HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++++.++|+|||.+++.... ...+++.+++++.||..+++
T Consensus 220 ~~~~~~~~Lk~gG~l~~e~g~-----------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 220 IIEQAPRYLKPGGWLLLEIGY-----------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHhcccCCEEEEEECc-----------------hHHHHHHHHHHhCCCceeEE
Confidence 888889999999999885311 12456889999999986555
No 50
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.68 E-value=6.5e-16 Score=132.28 Aligned_cols=178 Identities=20% Similarity=0.149 Sum_probs=133.6
Q ss_pred CCCCCCchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCe
Q 022929 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN 136 (290)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~ 136 (290)
...+..+.++.+++.+...|++....+....+.|++.++.+.+.++..........+|||+|||+|.++..+++..++.+
T Consensus 33 ~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~ 112 (251)
T TIGR03704 33 MVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIE 112 (251)
T ss_pred HHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCE
Confidence 33344467788999999889887777778888888888988888776543222346899999999999999998887889
Q ss_pred EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-CC-CCCCccEEEecCccc--------------ccC--------C--
Q 022929 137 VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PF-PTDYADRYVSAGSIE--------------YWP--------D-- 190 (290)
Q Consensus 137 v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-~~-~~~~~D~i~~~~~l~--------------~~~--------~-- 190 (290)
++++|+|+.+++.|++|....+++++.+|+.+. +. ..++||+|+++--.. |.+ +
T Consensus 113 v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl 192 (251)
T TIGR03704 113 LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL 192 (251)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence 999999999999999987655578899998652 21 124699999863211 110 1
Q ss_pred --HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 191 --PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 191 --~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+++.+.++|+|||.+++..... ..+++.++|++.||+..-.
T Consensus 193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 193 DVLRRVAAGAPDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceee
Confidence 2368888889999999999874321 2467888999999964433
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=6.1e-16 Score=135.32 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=103.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... ++++...|+...++ +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 4469999999999999999987 689999999999999988764322 57778888876555 567999999999998
Q ss_pred cC--CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 188 ~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++ +...+++++.++|+|||++++.......... ........++.+++.++++ +|++++..+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence 86 3457999999999999997765432211100 0112233468899999997 599988854
No 52
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.67 E-value=4.7e-16 Score=124.42 Aligned_cols=145 Identities=24% Similarity=0.278 Sum_probs=112.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCce-EEEcCCCCCC-CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECK-IVEGDAEDLP-FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~-~~~~d~~~l~-~~~~~~D~i~~~~~ 184 (290)
....|||+|||+|..-...--. |+..|+++|+++.|-+.+.+.+.. .+++ |+.++.+++| ++++++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456899999999985554332 578999999999999988766432 3566 8999999998 88999999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhH-hhhhH----HHhhc-----CCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA----DVWML-----FPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~~----~~~~~-----~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++...++.+.|+++.++|+|||.+++.++....... .++++ ..|+. ..+.+ .-+.|+++-|+.++.++.
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD-TGELLEDAEFSIDSCKRF 233 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh-HHHHhhhcccccchhhcc
Confidence 999999999999999999999999999988765322 22222 22221 12444 446788999999988886
Q ss_pred Cc
Q 022929 255 GP 256 (290)
Q Consensus 255 ~~ 256 (290)
..
T Consensus 234 ~~ 235 (252)
T KOG4300|consen 234 NF 235 (252)
T ss_pred cC
Confidence 54
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=3.4e-15 Score=121.57 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=96.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++++. ...+++++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 478999999999999999988877789999999999998887653 2346899999998864 346799999875
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHH---HHHCCCcEEEEEEcC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW---FQKAGFKDVQLKRIG 255 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~aGf~~v~~~~~~ 255 (290)
+.+...+++.+.++|+|||.+++..... ...++..+ +...||+.++...+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3456678899999999999998864221 22334444 444899988887764
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=7.9e-17 Score=141.66 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=144.9
Q ss_pred cccCCcCCCCCCccccccCCceeeeeecccccCCCCCC-chhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhcc
Q 022929 25 FLASDFHGKHIPKLSLIAKPRTVQSIKCSLSATSRPAS-QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALE 103 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (290)
++.....+.+...+.++............+.....+.. ..++.+|+.+..+|++....+...++.|++.++.+....+.
T Consensus 47 ~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~ 126 (307)
T PRK11805 47 QLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFA 126 (307)
T ss_pred HHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHH
Confidence 44444445554444444433333323333443444443 46788999999999998888888899999988888777665
Q ss_pred ccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEE
Q 022929 104 PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
......+..+|||+|||+|.++..++...|+.+++++|+|+.+++.|+++... .+++++++|+.+ ++++++||+|
T Consensus 127 ~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlI 205 (307)
T PRK11805 127 PWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLI 205 (307)
T ss_pred HHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEE
Confidence 32111123689999999999999999998889999999999999999988532 358899999855 2344579999
Q ss_pred EecCc-------------ccccCC------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 180 VSAGS-------------IEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~-------------l~~~~~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+++-- ..+.+. ...+++++.++|+|||.+++.... +.
T Consensus 206 vsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------~~ 267 (307)
T PRK11805 206 VSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------SR 267 (307)
T ss_pred EECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------CH
Confidence 98610 112221 247889999999999999885321 22
Q ss_pred HHHHHHHHHCCCcEEEEEE
Q 022929 235 EEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~ 253 (290)
+++.+++.+.||.-.+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4567777777876554443
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=121.95 Aligned_cols=147 Identities=24% Similarity=0.278 Sum_probs=114.9
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEE
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
.++...... +..+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++.. +++|..+|+.... ++...|++
T Consensus 21 dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--DATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--CCceecccHhhcC-CCCccchh
Confidence 445555554 6789999999999999999999999999999999999999988764 7899999998864 45569999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH----------------hhcCCCHHHHHHHHHH
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----------------WMLFPKEEEYIEWFQK 243 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ll~~ 243 (290)
+++-+++++++-.+++.++...|.|||.|.+.-+..-.......+... .....+...+-++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 999999999999999999999999999999987654322211111111 1123467777788877
Q ss_pred CCCcEEE
Q 022929 244 AGFKDVQ 250 (290)
Q Consensus 244 aGf~~v~ 250 (290)
.+-++.-
T Consensus 177 ~~~rvDi 183 (257)
T COG4106 177 LACRVDI 183 (257)
T ss_pred ccceeee
Confidence 7665433
No 56
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.66 E-value=8.6e-17 Score=130.55 Aligned_cols=193 Identities=19% Similarity=0.178 Sum_probs=131.5
Q ss_pred HHhHHhHhhhcccCCC--cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 76 FYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
.|+.+++.++..+-.. .-...+....+...... +..++||+|||+|..+..+... ..+.+|+|+|+.|++.|.++
T Consensus 90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 4555566666544332 22334444555555543 4789999999999999999888 57899999999999999987
Q ss_pred CCCCCceEEEcCCCCC--CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcC
Q 022929 154 EPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (290)
Q Consensus 154 ~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (290)
..... +.+.++..+ ...+++||+|++..|+.++.+.+.++-.....|+|||.+.++....+..+- -........-
T Consensus 167 g~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~RyA 243 (287)
T COG4976 167 GLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRYA 243 (287)
T ss_pred cchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhhc
Confidence 54332 223333211 134567999999999999999999999999999999999998655443321 0111111112
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEcCcccccccccccceeeeEEEEecC
Q 022929 232 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKP 278 (290)
Q Consensus 232 ~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~ 278 (290)
.+...+..+++..||++++++.+.-....+-...+.. ++|+|+
T Consensus 244 H~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L----~iark~ 286 (287)
T COG4976 244 HSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGIL----VIARKK 286 (287)
T ss_pred cchHHHHHHHHhcCceEEEeecccchhhcCCCCCCce----EEEecC
Confidence 3567889999999999999998765443333333322 456654
No 57
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.9e-16 Score=134.25 Aligned_cols=171 Identities=23% Similarity=0.217 Sum_probs=131.1
Q ss_pred CchhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEe
Q 022929 62 SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (290)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD 141 (290)
....+.++..+..+|++....+.+.++.|++.++.+.+.++...... .. +|||+|||||.+++.++...|...|+|+|
T Consensus 64 ~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~-~~-~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 64 AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL-DK-RILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc-CC-cEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 56667888888889999999999999999999999999877433322 12 89999999999999999999889999999
Q ss_pred CCHHHHHHHhhhCCCCC---ceEEEcCCCCCCCCCCCccEEEecC--ccc-----------ccCC------------HHH
Q 022929 142 QSPHQLAKAKQKEPLKE---CKIVEGDAEDLPFPTDYADRYVSAG--SIE-----------YWPD------------PQR 193 (290)
Q Consensus 142 ~s~~~~~~a~~~~~~~~---v~~~~~d~~~l~~~~~~~D~i~~~~--~l~-----------~~~~------------~~~ 193 (290)
+|+++++.|++|....+ +.++.+|+.+ +... +||+|+++- +-. +.|. ...
T Consensus 142 is~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~ 219 (280)
T COG2890 142 ISPDALALARENAERNGLVRVLVVQSDLFE-PLRG-KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRR 219 (280)
T ss_pred CCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccCC-ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHH
Confidence 99999999999865444 4556667655 3333 799999951 111 1110 236
Q ss_pred HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC-CcEEEEEE
Q 022929 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG-FKDVQLKR 253 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-f~~v~~~~ 253 (290)
++.++.+.|+|||.+++..-.. ..+.+.+++.+.| |..+...+
T Consensus 220 i~~~a~~~l~~~g~l~le~g~~-----------------q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 220 ILGEAPDILKPGGVLILEIGLT-----------------QGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHHhhHHHcCCCcEEEEEECCC-----------------cHHHHHHHHHhcCCceEEEEEe
Confidence 8889999999999998864322 4678999999999 66555544
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=2e-15 Score=123.79 Aligned_cols=169 Identities=21% Similarity=0.189 Sum_probs=123.9
Q ss_pred hhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC--CCc
Q 022929 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KEC 159 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~v 159 (290)
-++++..++|...-...++..... ...+|||||||.|.....+.+..++ ..++++|.|+.+++..+++... .++
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~ 124 (264)
T KOG2361|consen 47 ENRFFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV 124 (264)
T ss_pred cccccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh
Confidence 345666666655444444333221 2238999999999999999988776 8999999999999999987543 345
Q ss_pred eEEEcCCCC----CCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH------
Q 022929 160 KIVEGDAED----LPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV------ 227 (290)
Q Consensus 160 ~~~~~d~~~----l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~------ 227 (290)
.....|+.. -+...+++|+|++..++..++.. +..++++.++|||||.|++-+.........++....
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nf 204 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENF 204 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecce
Confidence 555666632 24667889999999999988543 579999999999999999998776554443332211
Q ss_pred -------hhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 228 -------WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 228 -------~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
...+++.+++.+++.++||..++....
T Consensus 205 YVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 205 YVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred EEccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 114579999999999999987776543
No 59
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.66 E-value=2.7e-15 Score=126.63 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=111.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCC-CCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFP-TDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~-~~~~D~i~~~~~l 185 (290)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.... ++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999988876 567999999999999998764322 577888888665533 3679999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchh-Hhhh-----h-------HHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRY-----F-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~-----~-------~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
++..++..+++++.++|+|||.+++......... .... . ...+..+++..++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999998765433211 0000 0 0112235678899999999999999887
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 544
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=4.5e-17 Score=119.64 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.3
Q ss_pred EEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--CCCCCccEEEecCcccccC
Q 022929 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l~~~~ 189 (290)
||||||+|.++..+++.++..+++++|+|+.+++.++++... .+......+..+.. ...++||+|++.++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999998899999999999999888766332 22333333333321 1225799999999999999
Q ss_pred CHHHHHHHHHhccCCCCEE
Q 022929 190 DPQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l 208 (290)
+.+.+++++.++|+|||.+
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.66 E-value=2.3e-15 Score=129.23 Aligned_cols=168 Identities=28% Similarity=0.313 Sum_probs=122.1
Q ss_pred HhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH
Q 022929 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (290)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~ 145 (290)
+.++..+...|++....+....+.+++.++.+...+++... ..+.+|||+|||+|.++..+++..+..+++|+|+++.
T Consensus 45 pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~ 122 (251)
T TIGR03534 45 PVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE 122 (251)
T ss_pred CHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH
Confidence 33344444444544444445566677777878777777654 2457999999999999999999988889999999999
Q ss_pred HHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCcccc------cC--------------------CHHHHHH
Q 022929 146 QLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY------WP--------------------DPQRGIR 196 (290)
Q Consensus 146 ~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~------~~--------------------~~~~~l~ 196 (290)
+++.++++.. ..+++++.+|+.+ ++++++||+|+++-.... +. ....+++
T Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~ 201 (251)
T TIGR03534 123 ALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIA 201 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHH
Confidence 9999987643 2358899999876 455678999998532221 10 0136788
Q ss_pred HHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 197 EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 197 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
++.++|+|||.+++... +...+++.++|+++||+.+++..
T Consensus 202 ~~~~~L~~gG~~~~~~~-----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 202 QAPRLLKPGGWLLLEIG-----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred HHHHhcccCCEEEEEEC-----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 99999999999988532 12357789999999998776644
No 62
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.64 E-value=4.3e-15 Score=119.16 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C-CCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l-~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|||+|||.|.++..|.+. .+...+|+|++++.+..+.++ ++.++++|+++ + .+++++||.|+++.+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----GVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----CCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 38899999999999999999887 488999999999998888754 56799999954 4 38899999999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh-----cCCCHHHHHHHHHHCCCcEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-----LFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~ll~~aGf~~v 249 (290)
++.+|+.+|+++.|+ |...+++.+++..+...-. ++..|. ++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999988666 5677787777655432221 111221 34589999999999999999
Q ss_pred EEEEcCccc
Q 022929 250 QLKRIGPKW 258 (290)
Q Consensus 250 ~~~~~~~~~ 258 (290)
+...+...+
T Consensus 164 ~~~~~~~~~ 172 (193)
T PF07021_consen 164 ERVFLDGGR 172 (193)
T ss_pred EEEEEcCCC
Confidence 988876654
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=7.3e-15 Score=121.31 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=103.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C-CCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l-~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++.. +..++|+|+|+++++.+++ .+++++.+|+.+ + ++++++||+|++..+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 67899999999999999887763 5688999999999999875 257888888865 4 366778999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-----------------hhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++++..+++++.+.++ .+++..+....+.... ..+.....+++.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 9999999999888765 4444433322111000 0011112367899999999999999999
Q ss_pred EEEcC
Q 022929 251 LKRIG 255 (290)
Q Consensus 251 ~~~~~ 255 (290)
...+.
T Consensus 165 ~~~~~ 169 (194)
T TIGR02081 165 RAAFD 169 (194)
T ss_pred EEEec
Confidence 87763
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.64 E-value=3.9e-15 Score=123.52 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=86.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||||||+|..+..+++..++.+++|+|+|+++++.|+++.. ++.+..+|+.+ ++++++||+|++..+++|++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 6789999999999999999988778899999999999999998753 57788999887 78888999999999999996
Q ss_pred C--HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 190 D--PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 190 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
. ..++++++.+++ ++.+++.+...+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 3 357888888887 467777665443
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.63 E-value=2.3e-15 Score=129.88 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=99.1
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccC---CCCCCCEEEEEcCccch----hHHHHHhhCC-----CCeEEEEeCC
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQS 143 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~----~~~~l~~~~~-----~~~v~~vD~s 143 (290)
+.+....-...++......+.+...++..+. ...++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|
T Consensus 62 l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 62 LLDLMTTNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred HHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 3443333334455544444455555443221 11245799999999996 4555666543 4789999999
Q ss_pred HHHHHHHhhhCC------------------------------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH--
Q 022929 144 PHQLAKAKQKEP------------------------------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP-- 191 (290)
Q Consensus 144 ~~~~~~a~~~~~------------------------------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~-- 191 (290)
+.+++.|++..- ..+++|.+.|+.+.+.+.++||+|+|.++++|++++
T Consensus 142 ~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~ 221 (264)
T smart00138 142 LKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQ 221 (264)
T ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHH
Confidence 999999997531 136899999998877767789999999999999755
Q ss_pred HHHHHHHHhccCCCCEEEEEc
Q 022929 192 QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 192 ~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.++++++.+.|+|||.+++..
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEEC
Confidence 479999999999999999863
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=1.6e-14 Score=120.55 Aligned_cols=137 Identities=13% Similarity=0.058 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------CCCCceEEEcCCCCCCCC-C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------~~~~v~~~~~d~~~l~~~-~ 173 (290)
++.+|||+|||.|..+..++++ +.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 6689999999999999999998 899999999999999864321 123588999999887632 3
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+.||.|+-..+++|++.. ...++.+.++|+|||.+++........... .. ....+.+++.++|.. +|++..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~---gp--p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA---GP--PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC---Cc--CCCCCHHHHHHHhcC-CceEEEE
Confidence 569999999888888644 368999999999999877765543221110 11 123588999998874 5666666
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
+..
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 553
No 67
>PRK04266 fibrillarin; Provisional
Probab=99.63 E-value=2.2e-14 Score=120.55 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCC----CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL----PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l----~~~~~~~D~i~~~~ 183 (290)
+++.+|||+|||+|.++..+++..+..+|+++|+++.+++.+.++.. ..|+.++.+|.... ++. ++||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 37899999999999999999998766799999999999887665533 35789999998642 233 4599999642
Q ss_pred cccccCC-HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 184 SIEYWPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 184 ~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
.. ++ ...+++++.++|||||.+++.-+.....+.... . . ..++..++++++||+.++...+++.
T Consensus 150 ~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~---~---~~~~~~~~l~~aGF~~i~~~~l~p~ 214 (226)
T PRK04266 150 AQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-K---E---IFKEEIRKLEEGGFEILEVVDLEPY 214 (226)
T ss_pred CC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-H---H---HHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 21 11 234689999999999999994221110000000 0 0 1144569999999999999987654
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.62 E-value=9.3e-16 Score=113.09 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=77.2
Q ss_pred EEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEec-Ccccc
Q 022929 114 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEY 187 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~-~~l~~ 187 (290)
|||+|||+|..+..+++.+ +..+++|+|+|+++++.++++.. ..++++++.|+.+++..+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999885 34899999999999999998863 237899999999988778889999995 55888
Q ss_pred cCCH--HHHHHHHHhccCCCC
Q 022929 188 WPDP--QRGIREAYRVLKLGG 206 (290)
Q Consensus 188 ~~~~--~~~l~~~~~~L~pgG 206 (290)
+++. .++++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8754 479999999999998
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=3.7e-15 Score=123.72 Aligned_cols=124 Identities=22% Similarity=0.139 Sum_probs=98.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCC-CCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDA-EDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~-~~l~--~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|..+..+++..|+.+++|+|+|+++++.++++.. ..++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5689999999999999999998888899999999999999987642 25689999998 6655 6677899999876
Q ss_pred cccccC--------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 184 SIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 184 ~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
...+.. ....+++++.++|+|||.+++...... -..++.+.+++.||.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135789999999999999999764332 13567788888998644
No 70
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=7.4e-15 Score=117.39 Aligned_cols=118 Identities=29% Similarity=0.295 Sum_probs=94.5
Q ss_pred EEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 138 TILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 138 ~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+|+|+|++|++.|+++.. ..+++++++|+.++|+++++||+|++..++++++++.+.++++.++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999976532 23689999999999999989999999999999999999999999999999999998
Q ss_pred ccCCCchhHh-------------------------hhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 212 GPVYPTFWLS-------------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 212 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+...+..... .+.......+++.+++.++|+++||+.+....+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 7765421111 0011111246789999999999999988776654
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.62 E-value=1.1e-14 Score=123.38 Aligned_cols=144 Identities=20% Similarity=0.305 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence 6789999999999999999887 56799999999999999887432 367888888533 35679999999999
Q ss_pred cccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH--------hhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+|++++ ..+++.+.+.+++++.+ ...+.............. ...+.+..++.++++++||++.+...+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 887754 46888888876544433 322221111111111111 1123578899999999999999998876
Q ss_pred cccc
Q 022929 256 PKWY 259 (290)
Q Consensus 256 ~~~~ 259 (290)
..++
T Consensus 217 ~~~~ 220 (230)
T PRK07580 217 SGFY 220 (230)
T ss_pred chhH
Confidence 5544
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.61 E-value=4.4e-15 Score=138.98 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=111.8
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCC--CCCCCCCCc
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAE--DLPFPTDYA 176 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~--~l~~~~~~~ 176 (290)
.+++.+... ++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++... ..+++++++|+. .+++++++|
T Consensus 28 ~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 28 EILSLLPPY-EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 334444332 5679999999999999999987 5699999999999998875432 357889999995 456777889
Q ss_pred cEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchh-HhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
|+|++..+++|+++. ..+++++.++|||||.+++.+....... ..+.. ....+.+...|.+++.++||......
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN--NPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC--CCCeecChHHHHHHHHHheeccCCCC
Confidence 999999999999874 5899999999999999999875533210 11100 11224567899999999999765443
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.61 E-value=2.2e-14 Score=116.90 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|||+|||+|.++..+++.. .+++++|+|+++++.++++... .+++++.+|+.+.. .++||+|+++...++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 56789999999999999999874 3899999999999999987432 24778888986643 347999999877765
Q ss_pred cCC---------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 188 WPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 188 ~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
.++ .+++++++.++|+|||.+++...... ...++.+.|++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 543 24679999999999999998764432 35788899999999
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
+...+.+-+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 887776644
No 74
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=3.5e-15 Score=139.82 Aligned_cols=105 Identities=27% Similarity=0.401 Sum_probs=90.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC--CCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l 185 (290)
++.+|||||||+|..+..+++..|+.+++|+|+|+.+++.|+++... .++.++++|..+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999988899999999999999999877432 35778889998776 777889999999988
Q ss_pred cccC-------------CHHHHHHHHHhccCCCCEEEEEccC
Q 022929 186 EYWP-------------DPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 186 ~~~~-------------~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
|++. +..++++++.++|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 8652 3468999999999999999998653
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=99.61 E-value=2.5e-14 Score=123.41 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccchhH--HHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTT--LGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~--~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
++++|+|||||.|.++ ..++...|+.+++++|+++++++.|++.+. .++++|..+|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988443 334456788999999999999999998763 256999999997754334569999999
Q ss_pred Cccccc--CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYW--PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+++++ +++.++++++.+.|+|||.+++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88887 578899999999999999999876
No 76
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=1.8e-14 Score=125.24 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=97.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC---CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+..+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|+++. .++.+..+|+.++|+++++||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5678999999999999999887653 47999999999999998765 46889999999999988899999986542
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh--HHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF--ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..++++.++|||||.+++..+........+.. ....... ... ....||++++.+++..
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~-~~~-----~~~~gF~~~~~~~~~~ 221 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHA-PEA-----EQLEGFELQHSERLAY 221 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccc-cch-----hhccCCCeeeEEEEEE
Confidence 24678999999999999988766543322211 1111111 111 1236999887777643
No 77
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.59 E-value=6.8e-15 Score=119.53 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=97.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.++||+|||.|..+..|+++ |..|+++|.|+.+++.+++.+... .++....|+.+..++ +.||+|++..++++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5689999999999999999999 899999999999998877654322 377889999887765 46999999999998
Q ss_pred cCCH--HHHHHHHHhccCCCCEEEEEccCCC-chhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE-cCc
Q 022929 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR-IGP 256 (290)
Q Consensus 188 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~-~~~ 256 (290)
++.. ..+++++...++|||++++...... ..+. . ......+...++.+.+. ||++++.++ ++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~--~--~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~ 173 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC--P--SPFPFLLKPGELREYYA--DWEILKYNEDVGE 173 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----S--S--S--B-TTHHHHHTT--TSEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC--C--CCCCcccCHHHHHHHhC--CCeEEEEEccccc
Confidence 8644 5799999999999999888644321 1111 0 01122346678888887 799988744 444
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.59 E-value=6.8e-14 Score=112.50 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=98.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++... .++++.+.|+... .++++||+|++..+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 5579999999999999999999 46899999999999999998654 6899999999774 467789999999999999
Q ss_pred CCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 189 PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 189 ~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+. +.++..+...|+|||.+++.+... ..-..|.+-...+.+.++|.+. |..++..+.
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------CcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 864 368899999999999999976421 1112233445789999999985 554444443
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=5e-14 Score=107.36 Aligned_cols=111 Identities=25% Similarity=0.333 Sum_probs=86.2
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CCCCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPFPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~~~~ 173 (290)
...+++.+... ++.+|||+|||+|.++..+++..|..+++++|+|+.+++.++++.. ..+++++..|... ++...
T Consensus 8 ~~~~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 33344444432 5689999999999999999999878899999999999999987632 3467888888754 33334
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++||.|++..... ...++++.+.+.|+|||.+++..
T Consensus 87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 5799999976543 34589999999999999998753
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=2.5e-14 Score=118.01 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=85.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i~~~~ 183 (290)
...+|||||||+|.++..+++..|...++|+|+++.+++.|+++.. ..+++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4579999999999999999999999999999999999999876532 347899999996543 4455799999876
Q ss_pred cccccCCH--------HHHHHHHHhccCCCCEEEEEccC
Q 022929 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...|.... ..+++++.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999987643
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.56 E-value=8.3e-14 Score=116.61 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------CCCCceEEEcCCCCCCCC-C
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------~~~~v~~~~~d~~~l~~~-~ 173 (290)
++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5689999999999999999997 899999999999999874321 124588899999887533 2
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
..||.|+-..++++++.. .++++.+.++|+|||.+++........... .. ....+.+++.+++.. +|++...
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---gP--p~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---GP--PFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---CC--CCCCCHHHHHHHhcC-CceEEEe
Confidence 469999999999988643 479999999999999766644332211111 01 124588999999863 3777766
Q ss_pred EEc
Q 022929 252 KRI 254 (290)
Q Consensus 252 ~~~ 254 (290)
+..
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 654
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=114.12 Aligned_cols=139 Identities=19% Similarity=0.347 Sum_probs=103.6
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l 169 (290)
++++...+..+... ++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. ..+++++.+|..+.
T Consensus 26 ~~~r~~~l~~l~~~-~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 26 EEIRALALSKLRLR-KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHHcCCC-CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 55565556666554 78999999999999999988764 35799999999999999987632 24678888888653
Q ss_pred -CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 170 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
+...++||+|++.. ...++..+++.+.+.|+|||.+++...... +..+..+.|++.||.
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~l~~~g~~- 164 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLE----------------TVNNALSALENIGFN- 164 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHH----------------HHHHHHHHHHHcCCC-
Confidence 32335699999854 234667899999999999999987433111 356788899999994
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
.++..+
T Consensus 165 ~~~~~~ 170 (198)
T PRK00377 165 LEITEV 170 (198)
T ss_pred eEEEEE
Confidence 444444
No 83
>PTZ00146 fibrillarin; Provisional
Probab=99.54 E-value=9.1e-13 Score=113.38 Aligned_cols=156 Identities=14% Similarity=0.018 Sum_probs=102.7
Q ss_pred ccHHHHHhhccc---cCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCC
Q 022929 93 WTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAE 167 (290)
Q Consensus 93 ~~~~~~~~~l~~---~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~ 167 (290)
+...+...++.- +.+ .++.+|||+|||+|.++..+++... ...|+++|+++.+.+...+.. ...|+.++..|+.
T Consensus 113 ~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred cccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 445566555443 333 4889999999999999999999864 468999999987543333222 2358899999985
Q ss_pred CC---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHC
Q 022929 168 DL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 168 ~l---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 244 (290)
.. ....+++|+|++... ...+...++.++.++|||||.+++...... .......... ++ +++ +.|+++
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~pe~~----f~-~ev-~~L~~~ 262 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAKPEVV----FA-SEV-QKLKKE 262 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCCHHHH----HH-HHH-HHHHHc
Confidence 42 222346999998764 222334566789999999999999522111 1000000000 01 334 889999
Q ss_pred CCcEEEEEEcCccc
Q 022929 245 GFKDVQLKRIGPKW 258 (290)
Q Consensus 245 Gf~~v~~~~~~~~~ 258 (290)
||+.++...+.+.+
T Consensus 263 GF~~~e~v~L~Py~ 276 (293)
T PTZ00146 263 GLKPKEQLTLEPFE 276 (293)
T ss_pred CCceEEEEecCCcc
Confidence 99999999887643
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.54 E-value=4.5e-13 Score=106.93 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=109.6
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCC-
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAED- 168 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~- 168 (290)
..++++...++.+... ++++++|||||+|.+++.++...|..+++++|-++++++..++| +..+|++++.+++.+
T Consensus 18 TK~EIRal~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3466777778887765 89999999999999999999888899999999999999988877 446789999999954
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC-c
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF-K 247 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf-~ 247 (290)
++-.. ++|.|+.... .+.+.+++.+...|||||++++...... +.....+.+++.|+ +
T Consensus 97 L~~~~-~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LPDLP-SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hcCCC-CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 33222 5999998876 3466899999999999999988643221 34566788999999 6
Q ss_pred EEEEE
Q 022929 248 DVQLK 252 (290)
Q Consensus 248 ~v~~~ 252 (290)
++++.
T Consensus 156 i~~v~ 160 (187)
T COG2242 156 IVQVQ 160 (187)
T ss_pred EEEEE
Confidence 65554
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.52 E-value=4.4e-13 Score=112.50 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=112.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~ 183 (290)
...+|||+|||+|.+++.++++.+..++++||+++++.+.|+++... .++++++.|+..+. ....+||+|+|+-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 47899999999999999999998779999999999999999988543 46999999997653 3344699999953
Q ss_pred cccccC------------------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 184 SIEYWP------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 184 ~l~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
-..-.. +.+++++.+..+|||||.+.++-+.. ...++.+++.+.+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhcC
Confidence 322111 13478999999999999999975432 4578899999999
Q ss_pred CcEEEEEEcCcccccccccccceeeeEEEEecCCCC
Q 022929 246 FKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASG 281 (290)
Q Consensus 246 f~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~k~~~~ 281 (290)
|...++.-+-++-.. ....+ .+.++|-..+
T Consensus 187 ~~~k~i~~V~p~~~k----~A~~v--Lv~~~k~~~~ 216 (248)
T COG4123 187 LEPKRIQFVYPKIGK----AANRV--LVEAIKGGKS 216 (248)
T ss_pred CCceEEEEecCCCCC----cceEE--EEEEecCCCC
Confidence 998888877554331 12222 4666665443
No 86
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.52 E-value=4.4e-14 Score=114.27 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=113.8
Q ss_pred HHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCC-CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
-+|++..+.-|.....-.....++....+..+.++. ...-|||||||+|.-+..+.+. +...+|+|+|+.|++.|.+
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH
Confidence 455566666666543333444556666666655431 3578999999999999888776 7899999999999999997
Q ss_pred hCCCCCceEEEcCC-CCCCCCCCCccEEEecCcccccCC-------HH----HHHHHHHhccCCCCEEEEEccCCCchhH
Q 022929 153 KEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPD-------PQ----RGIREAYRVLKLGGKACIIGPVYPTFWL 220 (290)
Q Consensus 153 ~~~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~~l~~~~~-------~~----~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 220 (290)
..- .-.++.+|+ +.+||..+.||.+++...+.|+=+ |. .++..++.+|++|+..++........
T Consensus 91 ~e~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~-- 166 (270)
T KOG1541|consen 91 REL--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA-- 166 (270)
T ss_pred hhh--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--
Confidence 422 135788888 778999999999999888776622 22 57888999999999988864322111
Q ss_pred hhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 221 SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+.+.+.+....+||.---+..
T Consensus 167 ------------q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 167 ------------QIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred ------------HHHHHHHHHHhhccCCceeee
Confidence 234556666777876333333
No 87
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=4.9e-14 Score=113.82 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+..+|||+|||+|.++..+++..+..+++++|+++.+++.++++...+ +++++..|+.+ +.++++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 578999999999999999999988888999999999999999874432 37889999866 34467899999987655
Q ss_pred ccCC-----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPD-----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.-.+ .++++++..++|+|||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4443 35799999999999999977644
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=4.1e-13 Score=110.01 Aligned_cols=125 Identities=25% Similarity=0.350 Sum_probs=96.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CC--ceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KE--CKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~--v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+|||+|||+|.++..+++. +.+++++|+|+++++.++++... .+ +.++..|+.+ ++.+.+||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 6789999999999999999988 68999999999999999776421 12 7788888866 344557999998654
Q ss_pred ccccC---------------------CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 185 IEYWP---------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 185 l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+.... ..+.+++++.++|+|||.+++..... ...+++.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~~ 163 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLEK 163 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHHH
Confidence 43211 13468999999999999988765321 135678899999
Q ss_pred CCCcEEEEEE
Q 022929 244 AGFKDVQLKR 253 (290)
Q Consensus 244 aGf~~v~~~~ 253 (290)
+||++..+..
T Consensus 164 ~g~~~~~~~~ 173 (188)
T PRK14968 164 LGFEAEVVAE 173 (188)
T ss_pred CCCeeeeeee
Confidence 9998776654
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.52 E-value=3.6e-13 Score=112.25 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=79.7
Q ss_pred cCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCC
Q 022929 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDY 175 (290)
Q Consensus 105 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~ 175 (290)
....+++.+|||||||+|.++..+++..+ ...|+|+|+++ + . ...+++++++|+.+.+ +.+++
T Consensus 46 ~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~--~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 46 DKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D--PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred hccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c--CCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 33334788999999999999999998863 46999999987 1 1 1246899999998753 55678
Q ss_pred ccEEEecCcccccCCH-----------HHHHHHHHhccCCCCEEEEEccC
Q 022929 176 ADRYVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
||+|+|..+.++..++ ..+++.+.++|+|||.+++....
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999998776655432 35889999999999999996543
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=2.8e-13 Score=120.78 Aligned_cols=145 Identities=19% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEE
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVE 163 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~ 163 (290)
.+.+......+...++..... +++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. ..++.+..
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~ 236 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR 236 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe
Confidence 334445555666666555444 37889999999999999887765 7899999999999999987743 23478899
Q ss_pred cCCCCCCCCCCCccEEEecCccc------c--c-CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIE------Y--W-PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~------~--~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
+|+.++++.+++||+|+++--.. . . .-..++++++.++|+|||.+++..+..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------- 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------- 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------
Confidence 99999888777899999953211 0 1 113679999999999999998875432
Q ss_pred HHHHHHHHHCCCcEEEEEEc
Q 022929 235 EEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~ 254 (290)
.++.++++++|| +++....
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 356678999999 7766553
No 91
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=1.8e-13 Score=113.97 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~ 171 (290)
+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.|+++... .+++++.+|..+...
T Consensus 60 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34444454443 3778999999999999999988754 46999999999999999876432 347899999976443
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..++||+|++..++++++ +++.+.|+|||.+++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 456799999998877654 4688999999999774
No 92
>PLN02672 methionine S-methyltransferase
Probab=99.51 E-value=9.4e-14 Score=137.78 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=125.1
Q ss_pred hHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCC-CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHH
Q 022929 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (290)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~ 148 (290)
..+..+||+....+-..+++|+++++.+.+. +...... -++.+|||+|||+|.+++.+++..+..+++|+|+|+++++
T Consensus 78 ~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 78 YEGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 3566788998899999999999999999888 5443210 1356899999999999999999988789999999999999
Q ss_pred HHhhhCCC-------------------CCceEEEcCCCCCCCC-CCCccEEEecC--------------cccccC-----
Q 022929 149 KAKQKEPL-------------------KECKIVEGDAEDLPFP-TDYADRYVSAG--------------SIEYWP----- 189 (290)
Q Consensus 149 ~a~~~~~~-------------------~~v~~~~~d~~~l~~~-~~~~D~i~~~~--------------~l~~~~----- 189 (290)
.|++|... .+++++++|+.+.... ..+||+|+++- +..|.|
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99887532 3589999999663211 23699999931 111111
Q ss_pred ---------------C----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH-HHHHHCCCcEE
Q 022929 190 ---------------D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI-EWFQKAGFKDV 249 (290)
Q Consensus 190 ---------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~aGf~~v 249 (290)
+ +.++++++.++|+|||.+++..-.. ..+.+. +++++.||+.+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----------------q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----------------PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHHHCCCCee
Confidence 1 2468888999999999998764322 245677 69999999887
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
++...
T Consensus 300 ~~~~~ 304 (1082)
T PLN02672 300 KLWQT 304 (1082)
T ss_pred EEeee
Confidence 76543
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=99.50 E-value=1.1e-12 Score=110.77 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred ccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEc
Q 022929 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEG 164 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~ 164 (290)
++.+...++.+. ..+..... .++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.... +++++.+
T Consensus 15 ~~~p~~ds~~l~-~~l~~~~~-~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~ 91 (223)
T PRK14967 15 VYRPQEDTQLLA-DALAAEGL-GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG 91 (223)
T ss_pred CcCCCCcHHHHH-HHHHhccc-CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC
Confidence 344444444333 33333333 26789999999999999998876 3459999999999999998875432 4678888
Q ss_pred CCCCCCCCCCCccEEEecCcccccCC---------------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 165 DAEDLPFPTDYADRYVSAGSIEYWPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 165 d~~~l~~~~~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
|+.+ .+++++||+|+++--...... .+.+++++.++|||||.+++......
T Consensus 92 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------- 163 (223)
T PRK14967 92 DWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------- 163 (223)
T ss_pred chhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------
Confidence 8866 345567999999642221110 24578889999999999998644331
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
+..++.+.+++.||.+.....
T Consensus 164 ---------~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 164 ---------GVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred ---------CHHHHHHHHHHCCCCeEEEEe
Confidence 234666777788886555544
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.1e-13 Score=116.35 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=96.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceE----EEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~----~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||||.+++..++. +..+++|+|+++.+++.+++|...+++.. ...+....+ ..++||+|+++-.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhH
Confidence 7899999999999999999887 45779999999999999999987777662 222323322 23579999986422
Q ss_pred cccCCH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
++ ..+...+.+.|||||.++++..... ..+.+.+.++++||+++++...
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeEeEEEec
Confidence 22 3688899999999999999874322 2477889999999999988765
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=106.70 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=108.3
Q ss_pred HHHHHhhccccC---CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCC
Q 022929 95 EDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAE 167 (290)
Q Consensus 95 ~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~ 167 (290)
+.+..++.+... ......+|||+|||+|.++..|++.-=....+|+|.|+.+++.|+..+.. +.|+|.+.|+.
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc
Confidence 344555554433 22233499999999999999999873235699999999999998865432 23899999998
Q ss_pred CCCCCCCCccEEEecCcccccC---C-----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHH
Q 022929 168 DLPFPTDYADRYVSAGSIEYWP---D-----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~---~-----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+..+..++||+|+-...+..++ + +...+..+.++|+|||.++|..+++ |.+++.+
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv~ 191 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELVE 191 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHHH
Confidence 8677788899998766655441 1 1247888999999999999988765 7899999
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
.++..||+.....+.+
T Consensus 192 ~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 192 EFENFNFEYLSTVPTP 207 (227)
T ss_pred HHhcCCeEEEEeeccc
Confidence 9999999766555433
No 96
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.49 E-value=1.6e-13 Score=117.22 Aligned_cols=126 Identities=30% Similarity=0.412 Sum_probs=97.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
+..+|||||+|+|.++..+++.+|+.+++.+|+ |++++.+++ ..+++++.+|+. .+++. +|++++.+++|+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 567999999999999999999999999999999 999999988 678999999998 46666 99999999999998
Q ss_pred CHH--HHHHHHHhccCCC--CEEEEEccCCCch---hHhh---hhHHHh------hcCCCHHHHHHHHH
Q 022929 190 DPQ--RGIREAYRVLKLG--GKACIIGPVYPTF---WLSR---YFADVW------MLFPKEEEYIEWFQ 242 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~pg--G~l~i~~~~~~~~---~~~~---~~~~~~------~~~~~~~~~~~ll~ 242 (290)
+.+ .+|+++++.|+|| |+|+|.+...+.. .... ...+.. ..-+|.++|.++|+
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 765 7999999999999 9999987764321 1111 111211 12367888888874
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=4e-13 Score=115.28 Aligned_cols=122 Identities=25% Similarity=0.312 Sum_probs=89.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++...+++. +...++..+.+||+|+++...+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~--- 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN--- 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH---
Confidence 7899999999999999887765 3456999999999999999886544431 0001111122699999864432
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++++.++|||||.+++.+.... ..+++.+.+++.||++++....+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 234688999999999999999764321 35678899999999988776643
No 98
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=2.5e-13 Score=121.91 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
.+.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++... .+++++..|..+. +..++||+|+|+-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 34699999999999999999999999999999999999999987421 2578888887552 3445799999986
Q ss_pred ccccc---CC--HHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYW---PD--PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~---~~--~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+|.. .+ ..++++.+.++|+|||.++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 66533 21 24789999999999999999853
No 99
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.47 E-value=1.2e-12 Score=109.67 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++ +.+.+ |..+..-.+.+||+|.|.+++....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 45789999999999999999985 5799999999998888754 33332 3333333445799999999999999
Q ss_pred CHHHHHHHHHhccCCCCEEEEEc--cCCCc--------hhHhhhhHHHhhcC-CCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIG--PVYPT--------FWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~--~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
+|..+|+.+++.|+|+|.+++.- |..+. ....+.++.....+ -..+.+.+.|+.+||+++...+.+.-+
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCccc
Confidence 99999999999999999998852 11110 01111111000000 023456689999999999999999888
Q ss_pred ccccccccceeeeEEEEec
Q 022929 259 YRGVRRHGLIMGCSVTGVK 277 (290)
Q Consensus 259 ~~~~~~~~~~~~~~~~a~k 277 (290)
...+...-+.+.+.|.=.|
T Consensus 246 EGD~~~~~Y~L~DavfVL~ 264 (265)
T PF05219_consen 246 EGDLYQSYYVLDDAVFVLR 264 (265)
T ss_pred cCcccCceEEeeeEEEEec
Confidence 7777777777766554433
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=1e-12 Score=109.91 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=85.4
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~ 171 (290)
.+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.++++.. ..+++++.+|......
T Consensus 63 ~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 444455555554 3789999999999999999888753 4799999999999999988743 3578999999876555
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+.++||+|++.....++ .+.+.+.|||||.+++.
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 56789999998766543 34677789999998874
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.46 E-value=5.3e-13 Score=116.78 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=92.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC----ceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++...++ +.+...+.. +..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 6799999999999999888765 45699999999999999998754332 444555432 2335579999997653
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
+ ....++.++.++|+|||.+++...... ..+++.+.+++. |+++++.+.+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~~ 285 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQRE 285 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEeccC
Confidence 3 235789999999999999999764321 346777888776 9888766543
No 102
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=1.7e-12 Score=108.85 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=83.6
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
+...+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++++++.|+++.. ..+++++.+|..+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34455555544 3789999999999999999998853 3579999999999999988743 34689999999765434
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 4579999987665443 35678899999999874
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.44 E-value=6.1e-12 Score=110.77 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCC-CCCCCC----CccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTD----YADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~-l~~~~~----~~D~i 179 (290)
++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.++++... .++.++++|+.+ +++... ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 568999999999999999998865 58999999999999999876432 236678999975 333332 23345
Q ss_pred EecCcccccCC--HHHHHHHHHhccCCCCEEEEE
Q 022929 180 VSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 180 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 211 (290)
++...+++++. ...+++++++.|+|||.+++.
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55567777754 346999999999999999874
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.44 E-value=6.9e-13 Score=118.23 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=83.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
...+|||+|||+|.++..+++..|..+++++|+|+.+++.++++...++ .+++..|+... . .++||+|+|+..+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-I-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-c-CCCccEEEECCCccC
Confidence 3468999999999999999999888899999999999999998754433 45677777552 2 457999999988876
Q ss_pred cC-----CHHHHHHHHHhccCCCCEEEEEccC
Q 022929 188 WP-----DPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~-----~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. ..+++++++.++|+|||.++++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 42 2368999999999999999987654
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=4.6e-12 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=85.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCC-CC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~-l~ 170 (290)
.+.+..+++.+.. .++.+|||+|||+|.++..+++..++.+++++|+|+++++.++++.. ..+++++.+|+.+ ++
T Consensus 26 ~~v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 3344445555544 37889999999999999999887777899999999999999988642 2468899988854 22
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.....+|.++... ..+...+++++.++|+|||.+++....
T Consensus 105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2222367766532 234578999999999999999888643
No 106
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.42 E-value=4.5e-13 Score=109.59 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CC-ceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~-v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
...+.||+|+|-|..+..++... -.+|-.+|+++..++.|++.... .+ .++++..++++....++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999998876654 57899999999999999987654 22 5778888877654556899999999999
Q ss_pred ccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh-hcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 187 YWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-MLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 187 ~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
|++|.+ ++|+++...|+|+|.+++-+....... ..++... +..++.+.+.++|++||++++..+.-
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 999875 899999999999999999765543211 0111111 12357899999999999999987764
No 107
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.41 E-value=9.1e-12 Score=104.06 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=101.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---------------CCCCCceEEEcCCCCCCCC--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------------EPLKECKIVEGDAEDLPFP-- 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---------------~~~~~v~~~~~d~~~l~~~-- 172 (290)
++.+||+.|||.|..+..|++. +.+|+|+|+|+.+++.+.+. ....+++++++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5689999999999999999998 88999999999999997552 1123689999999998632
Q ss_pred -CCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 173 -TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 173 -~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
.++||+|+-..++++++.. .+..+.+.++|+|||.++++....+... -...+ ..+.+++.+++.. +|++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~----~GPPf--~v~~~e~~~lf~~-~~~i~ 193 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS----QTPPY--SVTQAELIKNFSA-KIKFE 193 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC----CCCCC--cCCHHHHHHhccC-CceEE
Confidence 2579999999999999754 4799999999999999988765332110 00011 1367888888864 45544
Q ss_pred EEE
Q 022929 250 QLK 252 (290)
Q Consensus 250 ~~~ 252 (290)
.+.
T Consensus 194 ~l~ 196 (226)
T PRK13256 194 LID 196 (226)
T ss_pred Eee
Confidence 444
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-12 Score=112.61 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=87.5
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc---eEEEcCCCCCCCCCCCccE
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---KIVEGDAEDLPFPTDYADR 178 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v---~~~~~d~~~l~~~~~~~D~ 178 (290)
++.+... .+.+|||+|||.|.+++.+++..|..+++-+|.|..+++.++++...+++ +++..|+.+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 3344433 34599999999999999999999999999999999999999998665433 567777765 4444 7999
Q ss_pred EEecCcccccCCH-----HHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+|+--+|--.+. +++++...+.|++||.|.++..
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9998887744322 3799999999999999999866
No 109
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=115.11 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
.+..+||||||+|.++..++...|...++|+|+++.+++.+.++.. ..|+.++++|+..+ .++++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5679999999999999999999999999999999999998876632 35789999998653 467888999998755
Q ss_pred ccccCCH------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..|.... ..+++++.++|+|||.+.+.+...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 4433222 479999999999999999976544
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.40 E-value=4.4e-13 Score=116.44 Aligned_cols=137 Identities=26% Similarity=0.305 Sum_probs=95.2
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc--eEEEcCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPF 171 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v--~~~~~d~~~l~~ 171 (290)
+..+--..+.... .++.+|||+|||||.+++..++. +..+|+|+|+++.+++.|++|...+++ .+......+ .
T Consensus 147 TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~ 221 (295)
T PF06325_consen 147 TTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--L 221 (295)
T ss_dssp HHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--T
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--c
Confidence 3444444444443 37889999999999999999887 456899999999999999988554332 222222222 2
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
...+||+|+++-...- ...++..+.++|+|||.++++..... ..+++.+.+++ ||++++.
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEEEE
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEEEE
Confidence 3477999998754432 23577888999999999999865432 35678888877 9998877
Q ss_pred EEcC
Q 022929 252 KRIG 255 (290)
Q Consensus 252 ~~~~ 255 (290)
...+
T Consensus 282 ~~~~ 285 (295)
T PF06325_consen 282 REEG 285 (295)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7643
No 111
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.40 E-value=5.5e-12 Score=102.78 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=109.0
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCc-eEEEcCCCCC--CC------CCCCccEE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKEC-KIVEGDAEDL--PF------PTDYADRY 179 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v-~~~~~d~~~l--~~------~~~~~D~i 179 (290)
.+|||||||+|..+..+++.+|.....-.|+++..+...+.. ....|+ .-+..|+... +. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 369999999999999999999999999999998886555433 122232 2345566443 22 24579999
Q ss_pred EecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCch----hHhhhhHHHh------hcCCCHHHHHHHHHHCCCc
Q 022929 180 VSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADVW------MLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 180 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~ll~~aGf~ 247 (290)
+|.+++|-.+- -+.+++.+.++|++||.|++-.+..... .....++... ...++.+++.++.+++||+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999986653 3579999999999999999988765421 1222222221 2356889999999999999
Q ss_pred EEEEEEcCcccc
Q 022929 248 DVQLKRIGPKWY 259 (290)
Q Consensus 248 ~v~~~~~~~~~~ 259 (290)
.++...++.+-.
T Consensus 187 l~~~~~MPANN~ 198 (204)
T PF06080_consen 187 LEEDIDMPANNL 198 (204)
T ss_pred cCcccccCCCCe
Confidence 999999987643
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.40 E-value=9.1e-12 Score=106.12 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=97.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
...+|||+|||+|.++..++...++.+++++|+++.+++.++++. .+++++++|+.++.. +.+||+|+++-.+.+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 457999999999999999888765689999999999999999875 378899999987653 45799999977766643
Q ss_pred CH--------------------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 190 DP--------------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 190 ~~--------------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
.. .+.+.....+|+|+|.+++.-...+. ++.-.+.+++..+++++||..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------YDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------ccccCCHHHHHHHHHhcCcEe
Confidence 21 34667778899999987776222221 122347899999999999964
No 113
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=9e-13 Score=110.05 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=111.7
Q ss_pred hhHhhhhHHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccC---CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEE
Q 022929 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTIL 140 (290)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v 140 (290)
..+.||+-+...|.+..-..-+.+++|+++++++++.+++.+. +. .+..|||+|||+|.++..++..+|...++++
T Consensus 100 r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~Ai 178 (328)
T KOG2904|consen 100 RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAI 178 (328)
T ss_pred cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEE
Confidence 4456777777777776677777899999999999998887643 22 4568999999999999999999999999999
Q ss_pred eCCHHHHHHHhhhCCC----CCceEEEcCCC-----CCCCCCCCccEEEecCccc--------------ccCC-------
Q 022929 141 DQSPHQLAKAKQKEPL----KECKIVEGDAE-----DLPFPTDYADRYVSAGSIE--------------YWPD------- 190 (290)
Q Consensus 141 D~s~~~~~~a~~~~~~----~~v~~~~~d~~-----~l~~~~~~~D~i~~~~~l~--------------~~~~------- 190 (290)
|.|+.++..|.+|... .+++.++.+++ ..+...+++|+++|+--.- |.+.
T Consensus 179 D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 179 DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 9999999999988542 45666655442 2235668899999952211 1111
Q ss_pred -----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 191 -----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 191 -----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...++.-+.|+|+|||.+.+...
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11466677899999999988754
No 114
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=7.9e-13 Score=99.89 Aligned_cols=102 Identities=30% Similarity=0.391 Sum_probs=82.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.+... .+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 68999999999999999987542 45899999997654 66788999999755
Q ss_pred ccccC--------CHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..... ....+++++.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 54321 124789999999999999988753
No 115
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.35 E-value=9.7e-12 Score=90.60 Aligned_cols=98 Identities=32% Similarity=0.403 Sum_probs=82.1
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCC-CCCCccEEEecCcccc-
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPF-PTDYADRYVSAGSIEY- 187 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l~~- 187 (290)
+|+|+|||.|.++..+++ .+..+++++|+++.++..+++. ....++.++..|..+... ...++|+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999988 4578999999999999988732 233468889999877553 4567999999999988
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999875
No 116
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.33 E-value=3.9e-11 Score=98.54 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CCCCCccEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~~~~~D~i 179 (290)
.++.+|||+|||+|.++..+++.. +..+++++|+|+.+ ...++++++.|+.+.+ ++.++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 478999999999999999998875 45689999999864 1246788888986642 345679999
Q ss_pred EecCccc----c-cCC------HHHHHHHHHhccCCCCEEEEEc
Q 022929 180 VSAGSIE----Y-WPD------PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 180 ~~~~~l~----~-~~~------~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++....+ + ... .+.+++.+.++|+|||.+++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 1 111 2578999999999999999864
No 117
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=2.6e-11 Score=101.51 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=81.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
.+...++..+.. .++.+|||+|||+|..+..+++.. .+++++|+++++++.++++.. ..++++..+|..+....
T Consensus 65 ~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 65 YMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 344444544444 378999999999999998887773 589999999999999987643 34688999998553223
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.++||+|++....+++ .+.+.+.|+|||.+++..
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEE
Confidence 4679999998766544 456789999999998854
No 118
>PRK01581 speE spermidine synthase; Validated
Probab=99.32 E-value=4.3e-11 Score=105.80 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCCCCceEEEcCCCC-CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
.+.+||+||||.|..+..+++..+..+++++|+++++++.|++. ...++++++.+|..+ +....++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 56799999999999999998875568999999999999999962 124678999999865 3334567999
Q ss_pred EEecCcccc---cCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 179 YVSAGSIEY---WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 179 i~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|++...-.. ... -..+++.+.+.|+|||.+++....... . .. ....+.+.++++||.+.....
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~----~~------~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--A----PL------VYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--h----HH------HHHHHHHHHHHhCCceEEEEE
Confidence 998732110 011 146899999999999998776432210 0 00 013467889999998887777
Q ss_pred cCccc
Q 022929 254 IGPKW 258 (290)
Q Consensus 254 ~~~~~ 258 (290)
.-+.+
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 65554
No 119
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.31 E-value=2.7e-11 Score=101.33 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=99.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------------CCCceEEEcCCCCCCCCC-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECKIVEGDAEDLPFPT- 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~v~~~~~d~~~l~~~~- 173 (290)
++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+... ..+++++++|+.+++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 6789999999999999999998 8899999999999999843211 135789999999876433
Q ss_pred CCccEEEecCcccccCC--HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
++||+|+=...++.++. ..+..+.+.++|+|||.+++.+...+..... ...+ ..+.+++.+++. .+|++...
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPPf--~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPPF--SVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS------HHHHHHHHT-TTEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcCC--CCCHHHHHHHhc-CCcEEEEE
Confidence 47999999988888853 3579999999999999955544322211000 1111 136789999999 79998887
Q ss_pred EE
Q 022929 252 KR 253 (290)
Q Consensus 252 ~~ 253 (290)
+.
T Consensus 189 ~~ 190 (218)
T PF05724_consen 189 EE 190 (218)
T ss_dssp EE
T ss_pred ec
Confidence 76
No 120
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.31 E-value=4.1e-11 Score=97.25 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=87.1
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF 171 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~ 171 (290)
.|...-.+.+++.+....+...|.|+|||.+.++..+.. ...|...|+.. .+-.+..+|+..+|+
T Consensus 54 ~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------------~n~~Vtacdia~vPL 118 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------------PNPRVTACDIANVPL 118 (219)
T ss_dssp TSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-------------SSTTEEES-TTS-S-
T ss_pred cCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------------CCCCEEEecCccCcC
Confidence 355555556666555444567999999999999866543 35899999932 133578899999999
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+++++|+++++.+|. -.+...+++++.|+|||||.|.|.+... ++.+.+.+.+.++..||+....
T Consensus 119 ~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 119 EDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKS--------------RFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp -TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHHHHHHHHHHCCCeEEec
Confidence 999999999887775 3567889999999999999999987432 2346788999999999998876
Q ss_pred EEcCc
Q 022929 252 KRIGP 256 (290)
Q Consensus 252 ~~~~~ 256 (290)
...+.
T Consensus 184 d~~n~ 188 (219)
T PF05148_consen 184 DESNK 188 (219)
T ss_dssp E--ST
T ss_pred ccCCC
Confidence 55443
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5e-11 Score=97.31 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~~~~ 173 (290)
+...+++.+... ++.+|||||||+|..+.-+++. ..+|+.+|..++..+.|++++ ...|+.+.++|...-.-+.
T Consensus 60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 455556666554 8999999999999999999998 459999999999999999874 4457999999996643345
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.+||.|+.......+| +.+.+.|++||++++-.
T Consensus 137 aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 137 APYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence 7899999988877666 46778899999998854
No 122
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=95.08 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 157 (290)
.+..+|||||.+|.++..+++.+....+.|+||++..++.|+++....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 578999999999999999999998889999999999999999863210
Q ss_pred ------CceEEEcCC----C-CCCCCCCCccEEEecCccccc--C--C--HHHHHHHHHhccCCCCEEEEEccCCCchhH
Q 022929 158 ------ECKIVEGDA----E-DLPFPTDYADRYVSAGSIEYW--P--D--PQRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (290)
Q Consensus 158 ------~v~~~~~d~----~-~l~~~~~~~D~i~~~~~l~~~--~--~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 220 (290)
++.|...+. . -+.+....||+|+|-.+-.|+ . | ...+++++.++|.|||+|++.-..+..+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 111111111 0 011234569999997665433 2 2 358999999999999999998666654432
Q ss_pred hhh-----hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 221 SRY-----FADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 221 ~~~-----~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
... ..+....+..++.+..++.+.+.-...++.+
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~ 256 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDL 256 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccc
Confidence 222 1122334467899999999874333344443
No 123
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=5.6e-12 Score=102.75 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+....++||||+-|.+...+.... ..+++-+|.|-.|++.+++.... -.+.....|-+.+++.++++|+|+++..+||
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 356889999999999999998884 57899999999999999876432 1356788899999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH------------HHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
.++....+.++...|||+|.++-.-...+.....+..- .....+....++-++|.+|||....+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 99999999999999999999977655555443332211 11123345678889999999986554
No 124
>PRK04457 spermidine synthase; Provisional
Probab=99.27 E-value=3.8e-11 Score=103.46 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~~~~~~~D~i~~~~~ 184 (290)
++.+|||||||.|.++..+++..|+.+++++|+++++++.|++++. .++++++.+|..+. ....++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 5689999999999999999999889999999999999999998854 25688999998442 222356999997531
Q ss_pred cc-ccC---CHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IE-YWP---DPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-. ..+ ....+++++.+.|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11 111 12589999999999999998854
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.5e-10 Score=96.59 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=104.0
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~ 174 (290)
.++...... ++++|+|.|+|||.++..++... |..+|+.+|+.++..+.|++|+.. +++++..+|+.+.-+.+
T Consensus 85 ~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 85 YIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 334445553 89999999999999999999754 458999999999999999998532 34888999997755554
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.||+|+. .+++|-..++.+.++|+|||.+++-.++... .+...+.|++.||..++..++
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhhee
Confidence 6999985 5789999999999999999999987765432 345556777778876666544
No 126
>PRK00811 spermidine synthase; Provisional
Probab=99.23 E-value=7.2e-11 Score=102.97 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CCCceEEEcCCCCC-CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDL-PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~v~~~~~d~~~l-~~~~~~~D~i~ 180 (290)
++.+||+||||.|..+..+++..+..+|+++|+++.+++.|++.+. .++++++.+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5689999999999999999887556799999999999999998642 35789999998542 23456799999
Q ss_pred ecCcccccCCH----HHHHHHHHhccCCCCEEEEE
Q 022929 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~ 211 (290)
+...-.+.+.. ..+++.+.+.|+|||.+++.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86543332221 46889999999999998875
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=1.8e-10 Score=106.28 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCC--CCCCCccEEEecC-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLP--FPTDYADRYVSAG- 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~--~~~~~~D~i~~~~- 183 (290)
.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++.... +++++++|+.+++ +..++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3789999999999999999999876679999999999999999875432 3678899997653 3356799999522
Q ss_pred -----ccc------ccCCH----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 184 -----SIE------YWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 184 -----~l~------~~~~~----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
++. +...+ .++++.+.++|||||.++++++..... .+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHHHHH
Confidence 111 11111 268999999999999999887644221 13445556666
Q ss_pred HC-CCcEEE
Q 022929 243 KA-GFKDVQ 250 (290)
Q Consensus 243 ~a-Gf~~v~ 250 (290)
+. +|+++.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 576544
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.7e-10 Score=101.80 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=81.9
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP 172 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~ 172 (290)
+...+++.+... ++.+|||||||+|.++..+++..+. ..|+++|+++++++.|+++.. ..++.++.+|..+....
T Consensus 68 l~a~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 444455554443 7789999999999999999987643 579999999999999987632 34688899998665444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++||+|++...+... ...+.+.|+|||.+++.
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 4679999987655433 34567899999998874
No 129
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=100.28 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=106.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
.-...+|+|.|.|..+..+...+|. +-+++.+...+..++.... ++|+.+.+|+..- .|. -|+|++.+++|||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3478999999999999999998765 6666666666555555554 5699999999764 554 58999999999999
Q ss_pred CHH--HHHHHHHhccCCCCEEEEEccCCCc-hhHhhh------hHHHh-------hcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 190 DPQ--RGIREAYRVLKLGGKACIIGPVYPT-FWLSRY------FADVW-------MLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 190 ~~~--~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~------~~~~~-------~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
|.+ ++|+++...|+|||.+++.+...+. ...... ..+.. ..-++..+++.++.++||.+.++..
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~ 330 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVAL 330 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEe
Confidence 876 8999999999999999999875543 111110 00111 1125789999999999999888876
Q ss_pred cCcc
Q 022929 254 IGPK 257 (290)
Q Consensus 254 ~~~~ 257 (290)
.+..
T Consensus 331 ~~~~ 334 (342)
T KOG3178|consen 331 TAYS 334 (342)
T ss_pred ccCc
Confidence 6543
No 130
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.22 E-value=8.7e-11 Score=96.76 Aligned_cols=96 Identities=30% Similarity=0.385 Sum_probs=73.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--C--CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
..++|+|||+|..++.+++. ..+|+|+|+|+.|++.|++.... . ...+...++.++--.+++.|+|++..++||
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999999999988 46899999999999999976432 1 123333344444334788999999999987
Q ss_pred cCCHHHHHHHHHhccCCCCEEEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
+. .+++.+++.++||++|.++.
T Consensus 113 Fd-le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 113 FD-LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hc-hHHHHHHHHHHcCCCCCEEE
Confidence 65 57789999999988774443
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=2.2e-10 Score=92.46 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=94.8
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCCCccEE
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRY 179 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~~~D~i 179 (290)
+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++.+|+.++++++.+||.|
T Consensus 5 i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 5 IVRAANLR-PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHHhcCCC-CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 33444432 6789999999999999999988 6799999999999999998864 347899999999888777679999
Q ss_pred EecCcccccCCHHHHHHHHHhc--cCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 180 VSAGSIEYWPDPQRGIREAYRV--LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+++--.+ +. ..++..+.+. +.++|.+++...... +.........+ ....++.+.=|++..+.++++.
T Consensus 82 i~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~e~a~-----rl~~~~~~~~y---~~lsv~~~~~~~~~~~~~v~~~ 150 (169)
T smart00650 82 VGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQKEVAR-----RLAAKPGSKDY---GRLSVLLQPYFDVKILFKVPPE 150 (169)
T ss_pred EECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEHHHhH-----HhcCCCCCCcc---cHHHHHHHHHeeEEEEEEEChh
Confidence 9865443 22 2344444433 346777776532211 11111110011 2223444555667777777765
Q ss_pred cc
Q 022929 258 WY 259 (290)
Q Consensus 258 ~~ 259 (290)
..
T Consensus 151 ~F 152 (169)
T smart00650 151 AF 152 (169)
T ss_pred hC
Confidence 44
No 132
>PRK03612 spermidine synthase; Provisional
Probab=99.20 E-value=3e-10 Score=107.09 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=92.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----------CCCCceEEEcCCCCC-CCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----------PLKECKIVEGDAEDL-PFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~v~~~~~d~~~l-~~~~~~~D~ 178 (290)
++++|||||||+|..+..+++..+..+++++|+++++++.++++. ..++++++.+|..+. ....++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 568999999999999999987632379999999999999999842 235788999998652 223457999
Q ss_pred EEecCcccccCCH-----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
|++...-...+.. +++++.+.+.|+|||.+++..... ... .+ ...++.+.+++.||.+
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~-~~----------~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFA-PK----------AFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccc-hH----------HHHHHHHHHHHcCCEE
Confidence 9997543332221 368899999999999998864321 110 00 1246888999999943
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.18 E-value=7.1e-11 Score=98.00 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=81.5
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~ 170 (290)
..+...+++.+... ++.+|||||||+|..+..++...+ ...|+++|..+...+.|+++.. ..++.++.+|...-.
T Consensus 58 P~~~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 34555666666654 899999999999999999988753 3579999999999999998743 457899999986533
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
-...+||.|++......++ ..+.+.|++||++++-
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 3446799999988776443 4577789999999884
No 134
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.18 E-value=1.6e-10 Score=95.95 Aligned_cols=134 Identities=20% Similarity=0.271 Sum_probs=100.1
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP 172 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~ 172 (290)
|...-.+.+++.+........|.|+|||.+.++. .. ...|+.+|+- ..+-.++.+|+.++|++
T Consensus 163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~------------a~~~~V~~cDm~~vPl~ 225 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLV------------AVNERVIACDMRNVPLE 225 (325)
T ss_pred CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeee------------cCCCceeeccccCCcCc
Confidence 3333444555555444467889999999998865 22 3578999981 12446789999999999
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
+++.|+++++.+|. -.+...+++++.|+|++||.++|.+... .|.+...+...+...||.+....
T Consensus 226 d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 226 DESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehh
Confidence 99999999877765 4577889999999999999999987432 24466778899999999877766
Q ss_pred EcCccc
Q 022929 253 RIGPKW 258 (290)
Q Consensus 253 ~~~~~~ 258 (290)
....++
T Consensus 291 ~~n~~F 296 (325)
T KOG3045|consen 291 VSNKYF 296 (325)
T ss_pred hhcceE
Confidence 555433
No 135
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.17 E-value=3.4e-10 Score=95.91 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=99.1
Q ss_pred hccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCC---
Q 022929 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--- 172 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~--- 172 (290)
++..+... +|.+|||.|+|+|.++..++... |.++|+..|..++..+.|++++. ..++++.+.|+.+..+.
T Consensus 32 I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 34444543 99999999999999999999764 56899999999999999998732 35789999999643332
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhcc-CCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 251 (290)
+..+|.|+. .+++|-..+..+.+.| ++||.+++-.++... .....+.|++.||..+++
T Consensus 111 ~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIET 169 (247)
T ss_dssp TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEEE
T ss_pred cCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeEE
Confidence 246999885 5788888999999999 899999887765432 345567788899988887
Q ss_pred EEcC
Q 022929 252 KRIG 255 (290)
Q Consensus 252 ~~~~ 255 (290)
.++-
T Consensus 170 ~Evl 173 (247)
T PF08704_consen 170 VEVL 173 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.17 E-value=3.5e-10 Score=104.35 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCc----eEEEcCCCCCCC--CCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLPF--PTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v----~~~~~d~~~l~~--~~~~~D~i~~~ 182 (290)
.++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++....++ .+..+|....+. ..++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 378999999999999999999987668999999999999999888653332 335566554432 45679999962
Q ss_pred ------CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ------~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++...++ ..++++++.++|||||.++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 34444443 24699999999999999999877653
No 137
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=6.6e-10 Score=102.73 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC----CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP----FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~----~~~~~~D~i~ 180 (290)
.++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++.. ..++++++.|...++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3789999999999999999998753 4699999999999999988743 246889999997765 3356799999
Q ss_pred ec------CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHH
Q 022929 181 SA------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (290)
Q Consensus 181 ~~------~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
+. .++.+.++ ..++++++.++|||||.++.+++..... -+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------------Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------------ENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hHHHHHH
Confidence 63 33443333 2368999999999999998887654221 0234566
Q ss_pred HHHHHC-CCcEE
Q 022929 239 EWFQKA-GFKDV 249 (290)
Q Consensus 239 ~ll~~a-Gf~~v 249 (290)
.++++. +|++.
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 666665 57643
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=3.3e-10 Score=110.47 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=94.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.. .+++++++|+.+.- -..++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999986 345799999999999999988542 35789999985521 1145799999842
Q ss_pred c-----------ccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 184 S-----------IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 184 ~-----------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
- .....+...++..+.++|+|||.+++...... .....+.+.++|+.+..++
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-----------------~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-----------------FKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-----------------CChhHHHHHhCCCeEEEEe
Confidence 1 11122345788899999999999988654321 1122678888999888877
Q ss_pred EcC
Q 022929 253 RIG 255 (290)
Q Consensus 253 ~~~ 255 (290)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
No 139
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=101.37 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=95.6
Q ss_pred HhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----CCCC
Q 022929 82 IVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLK 157 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----~~~~ 157 (290)
.+.+.++.+...+...+..++..-.+. +++.|||+|||+|.++...++.. ..+|+++|-|.-+ +.|.+. ....
T Consensus 33 ~iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ 109 (346)
T KOG1499|consen 33 GIHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLED 109 (346)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccc
Confidence 456667777766777777766655444 89999999999999999999983 6899999986644 666554 3334
Q ss_pred CceEEEcCCCCCCCCCCCccEEEecCccccc---CCHHHHHHHHHhccCCCCEEEE
Q 022929 158 ECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 158 ~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i 210 (290)
.++++.+.++++.+|.+++|+|++-++-.++ +..+.++-.--++|+|||.++=
T Consensus 110 ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 110 VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 5889999998877776789999997665544 4456677777899999998753
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.15 E-value=1.5e-10 Score=102.52 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=98.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---------CC----CceEEEcCCCCCC----CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECKIVEGDAEDLP----FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~----~v~~~~~d~~~l~----~~ 172 (290)
++.+|||+|||.|..+.-+... .-..++|+|++.+.++.|+++.. .. ...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999999998888776 35899999999999999998761 11 2567888885421 22
Q ss_pred --CCCccEEEecCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchh--Hh----------------------h
Q 022929 173 --TDYADRYVSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFW--LS----------------------R 222 (290)
Q Consensus 173 --~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~----------------------~ 222 (290)
..+||+|-|..++|+.=. ...+++++...|+|||+++...+...... .. .
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 348999999999998733 23699999999999999998755322110 00 0
Q ss_pred ----hhHHHh------------hcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 223 ----YFADVW------------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 223 ----~~~~~~------------~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.++..+ ......+.+.+++++.||+++....+.+
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 000000 0113578999999999999998877754
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.15 E-value=2.2e-10 Score=94.37 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=78.6
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC-C--CCCCCccEEEecCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL-P--FPTDYADRYVSAGS 184 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l-~--~~~~~~D~i~~~~~ 184 (290)
...+||||||.|.++..+|...|+..++|+|++...+..+.++ ....|+.++++|+..+ . ++++++|.|+..+-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3489999999999999999999999999999999988887655 2457899999999762 2 45678999987543
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
=-|.... ..+++.+.++|+|||.+.+.+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 3322211 379999999999999999987543
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.14 E-value=1.1e-09 Score=94.75 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~-- 182 (290)
+++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.++++... .+++++..|...++...++||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3789999999999999999988764 36899999999999999887533 35788888987665445569999962
Q ss_pred ----CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++..-++ ..++++.+.++|||||+|+.+++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12222111 12589999999999999998876543
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=8.6e-10 Score=101.66 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC-CCCCCccEEEec-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSA- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-~~~~~~D~i~~~- 182 (290)
.++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++... .++++...|...++ ...++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 378899999999999999999875 357999999999999999987543 35788999987765 345679999972
Q ss_pred -----CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 -----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 -----~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++..-++ ..+++.++.+.|||||.++.+++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221121 13579999999999999999887653
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.3e-09 Score=101.10 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--CCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~--~~~~~~D~i~~~ 182 (290)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++... .+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 367899999999999999999875 457999999999999999887432 35889999997653 33 569999974
Q ss_pred C------cccccCC----------------HHHHHHHHHhccCCCCEEEEEccCC
Q 022929 183 G------SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 183 ~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
- ++.+.++ ...+++.+.++|||||.++..++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 2 1111111 1258999999999999999876544
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.12 E-value=8.3e-10 Score=102.40 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=96.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC-
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL- 169 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l- 169 (290)
++.+...+++.+... ++.+|||+|||+|.++..+++. ..+++|+|+|+++++.|+++.. ..+++++.+|+.+.
T Consensus 282 ~e~l~~~vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 355566666655433 6789999999999999999988 4799999999999999998753 24689999998542
Q ss_pred ---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCC
Q 022929 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (290)
Q Consensus 170 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 246 (290)
++.+++||+|++.---.- ....++.+.+ ++|++.++++.... +. ..++ ..|.+.||
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~-tl---------------aRDl-~~L~~~gY 417 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPA-TL---------------ARDA-GVLVEAGY 417 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChH-Hh---------------hccH-HHHhhCCc
Confidence 244567999997532211 2345555555 68888888875211 10 1122 34456899
Q ss_pred cEEEEEEcC
Q 022929 247 KDVQLKRIG 255 (290)
Q Consensus 247 ~~v~~~~~~ 255 (290)
++.++..+.
T Consensus 418 ~l~~i~~~D 426 (443)
T PRK13168 418 RLKRAGMLD 426 (443)
T ss_pred EEEEEEEec
Confidence 988887653
No 146
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.12 E-value=2e-10 Score=94.27 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCEEEEEcCccch----hHHHHHhhC----C-CCeEEEEeCCHHHHHHHhhhC----------------------C---
Q 022929 110 RNMLVVDVGGGTGF----TTLGIVKHV----D-AKNVTILDQSPHQLAKAKQKE----------------------P--- 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~----~~~~l~~~~----~-~~~v~~vD~s~~~~~~a~~~~----------------------~--- 155 (290)
+.-+|+..||++|. ++..+.+.. + ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999996 444444411 1 369999999999999998620 0
Q ss_pred ------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEc
Q 022929 156 ------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 156 ------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 212 (290)
..++.|...|+.+.+...+.||+|+|.+|+-++... .++++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 135889999998733345679999999999999765 479999999999999999863
No 147
>PHA03412 putative methyltransferase; Provisional
Probab=99.11 E-value=7.4e-10 Score=92.44 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++.. ++.++..|+...++ +++||+|+++--..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 46799999999999999998763 24699999999999999998864 58899999976554 45799999963322
Q ss_pred cc--CC----------HHHHHHHHHhccCCCCEEEE-EccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 187 YW--PD----------PQRGIREAYRVLKLGGKACI-IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 187 ~~--~~----------~~~~l~~~~~~L~pgG~l~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
-. .+ ...+++.+.+++++|+. ++ .....-.+....++.. ..-.+..+...+.++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQ--DESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceee--ccCcccHHHHHHHHhcCeee
Confidence 11 11 23588888886666664 33 1111111101111100 01124567778889999853
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.11 E-value=3.1e-10 Score=103.11 Aligned_cols=104 Identities=19% Similarity=0.058 Sum_probs=77.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCCCC----CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP----FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~l~----~~~~~~D~i~ 180 (290)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+++... .+++++++|+.+.- ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999998876654 346999999999999999988542 25789999986531 1245799999
Q ss_pred ecCccccc---------CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+.--...- .+...+++.+.++|+|||.++..++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 86322111 12345667788999999999987654
No 149
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-09 Score=93.74 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=100.3
Q ss_pred HHhHHhHhhhcccCCCcccHHHHHhhccccCCCC--CCCEEEEEcCccch----hHHHHHhhCC-----CCeEEEEeCCH
Q 022929 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN--RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSP 144 (290)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiG~G~G~----~~~~l~~~~~-----~~~v~~vD~s~ 144 (290)
+.+....--..++...+..+.+...++..+.... ..-+|+-.||++|. ++..+.+..+ ..+|+|+|+|.
T Consensus 60 ~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~ 139 (268)
T COG1352 60 FLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL 139 (268)
T ss_pred HHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH
Confidence 4444444444566666666777777776443221 36799999999995 6666666654 48999999999
Q ss_pred HHHHHHhhhC-C-------------------------------CCCceEEEcCCCCCCCCCCCccEEEecCcccccCCH-
Q 022929 145 HQLAKAKQKE-P-------------------------------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP- 191 (290)
Q Consensus 145 ~~~~~a~~~~-~-------------------------------~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~- 191 (290)
.+++.|+.-. . ...|.|...|+...+...+.||+|+|.+|+.++..+
T Consensus 140 ~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~ 219 (268)
T COG1352 140 SVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET 219 (268)
T ss_pred HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH
Confidence 9999998521 0 124788888986655244559999999999999765
Q ss_pred -HHHHHHHHhccCCCCEEEEE
Q 022929 192 -QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 192 -~~~l~~~~~~L~pgG~l~i~ 211 (290)
.++++.++..|+|||.|++.
T Consensus 220 q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 220 QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEc
Confidence 47999999999999999885
No 150
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.08 E-value=1.9e-09 Score=91.67 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=107.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC---CC-ceEEEcCCCCCC---CCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KE-CKIVEGDAEDLP---FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~-v~~~~~d~~~l~---~~~~~~D~i~ 180 (290)
...+||||.||.|..........|. ..+...|.|+..++..++.... .+ ++|.++|+.+.. -.+...|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 6689999999999999999988876 7899999999999988866332 33 499999997632 1233489999
Q ss_pred ecCcccccCCHH---HHHHHHHhccCCCCEEEEEccCCCc-hh-HhhhhH------HHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 181 SAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIGPVYPT-FW-LSRYFA------DVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 181 ~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~-~~-~~~~~~------~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
.+...+.++|.+ ..++.+.+.+.|||+++.....+.+ .. ..+... ...+..++..++.++++++||+.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 999999998854 5788999999999999987643322 21 222222 223456899999999999999844
Q ss_pred E
Q 022929 250 Q 250 (290)
Q Consensus 250 ~ 250 (290)
+
T Consensus 295 ~ 295 (311)
T PF12147_consen 295 D 295 (311)
T ss_pred h
Confidence 3
No 151
>PLN02366 spermidine synthase
Probab=99.08 E-value=1.1e-09 Score=96.19 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
++++||+||||.|..+..+++..+..+++.+|+++.+++.+++.+. .++++++.+|.... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 5789999999999999999887445789999999999999998642 35799999997432 12345799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+...-.+.+. ...+++.+.+.|+|||.++...
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8543332222 2368999999999999997653
No 152
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.08 E-value=4.8e-09 Score=91.79 Aligned_cols=144 Identities=20% Similarity=0.206 Sum_probs=108.4
Q ss_pred cCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC---ceEEEc
Q 022929 88 INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEG 164 (290)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---v~~~~~ 164 (290)
+.|......+++.+++..... +|..|||-=||||.+++.+.-. |.+++|+|++..|++-|+.|+..-+ ..+...
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~-~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVK-RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred cCcCCcCHHHHHHHHHHhccc-cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 344555566777777766654 8999999999999999998777 8999999999999999999876433 334444
Q ss_pred -CCCCCCCCCCCccEEEecCcccc-----cCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCH
Q 022929 165 -DAEDLPFPTDYADRYVSAGSIEY-----WPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (290)
Q Consensus 165 -d~~~l~~~~~~~D~i~~~~~l~~-----~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (290)
|+..+|+++.++|.|++.--.-- ... ..++++.+.++|++||.+++..+.
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------------- 312 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------------- 312 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--------------------
Confidence 99999998888999998321110 111 357999999999999999887651
Q ss_pred HHHHHHHHHCCCcEEEEEEcC
Q 022929 235 EEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.....+++.||.++......
T Consensus 313 -~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 313 -DPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -cchhhHhhcCceEEEEEEEe
Confidence 12245677899988776643
No 153
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=1.4e-09 Score=100.87 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCCCCCCCccEEEec--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~~~~~~~D~i~~~-- 182 (290)
.++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++... .+++++.+|+..++ ++.+||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3788999999999999988887653 46999999999999999877532 35789999997765 44579999962
Q ss_pred ----CcccccC------C----------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 183 ----GSIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 183 ----~~l~~~~------~----------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.++...+ + ..+++.++.++|+|||.+++.++...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111111 1 12589999999999999999887653
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.05 E-value=1.2e-09 Score=94.68 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
.+.+||+||||+|..+..+++..+..+++++|+++++++.+++... ..+++++..|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999999887556789999999999999998642 24577777776431 222457999998
Q ss_pred cCcccccCC----HHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.......+. ...+++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3478899999999999998863
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.05 E-value=2.6e-09 Score=88.10 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=81.4
Q ss_pred ccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC
Q 022929 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL 169 (290)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l 169 (290)
.++.+++.+++.+....++.+|||+|||+|.++..++... ..+|+++|.++++++.++++.. ..+++++++|+.+.
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 3445544455444322257899999999999998765553 5799999999999999998743 23688999998542
Q ss_pred -CCCCCCccEEEecCcccccCCHHHHHHHHHh--ccCCCCEEEEEcc
Q 022929 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (290)
Q Consensus 170 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 213 (290)
+....+||+|++.--.. ..-...+++.+.. +|+|++.+++...
T Consensus 115 l~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22234699999865422 1223455565554 4789998888754
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.03 E-value=4e-09 Score=91.45 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=87.2
Q ss_pred hcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccch----hHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhC--
Q 022929 85 DHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE-- 154 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~-- 154 (290)
..++......+.++..+... ...-+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++..
T Consensus 94 T~FFRd~~~f~~L~~~~~~~----~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 94 TAFFREAHHFPILAEHARRR----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCccCCcHHHHHHHHHHHhc----CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 34444444444454443211 134799999999996 4444444322 368999999999999998641
Q ss_pred ----------------C----------------CCCceEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHH
Q 022929 155 ----------------P----------------LKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIREAY 199 (290)
Q Consensus 155 ----------------~----------------~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~ 199 (290)
. ...|.|...|+.+.+++ .+.||+|+|.+++.|++.. .++++++.
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 0 02478889999764432 4679999999999999654 57999999
Q ss_pred hccCCCCEEEEE
Q 022929 200 RVLKLGGKACII 211 (290)
Q Consensus 200 ~~L~pgG~l~i~ 211 (290)
+.|+|||+|++.
T Consensus 250 ~~L~pgG~L~lG 261 (287)
T PRK10611 250 PLLKPDGLLFAG 261 (287)
T ss_pred HHhCCCcEEEEe
Confidence 999999998775
No 157
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.03 E-value=7.1e-09 Score=84.82 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCC---CCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~---~~~~~D~i~~~~~l~~ 187 (290)
..++|||||=+....... .+-..|+.||+++. .-.+.+.|+.+.|+ ++++||+|.++.||.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 369999999876554333 23467999999541 23467788877665 3568999999999999
Q ss_pred cCCHH---HHHHHHHhccCCCCE-----EEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 188 WPDPQ---RGIREAYRVLKLGGK-----ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 188 ~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+|++. ++++.+.+.|+|+|. |+++-|..-. ....|.+.+.|..+|+..||..++.++...-.|
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y 187 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKKLAY 187 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCeEEE
Confidence 99986 699999999999999 8887654321 123466889999999999999999988776555
Q ss_pred ccc
Q 022929 260 RGV 262 (290)
Q Consensus 260 ~~~ 262 (290)
.-+
T Consensus 188 ~l~ 190 (219)
T PF11968_consen 188 WLF 190 (219)
T ss_pred EEE
Confidence 333
No 158
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=3.8e-09 Score=89.64 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC-C-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l-~-----~~~~~~D~ 178 (290)
++.+|||||||+|..+..++...+ +.+++++|+++++++.|+++... .+++++.+|+.+. + .+.++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999999888888754 58999999999999999987432 4688999998553 1 12457999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|++... -+.+..+++.+.+.|+|||.+++....+
T Consensus 148 VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 148 AFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 997532 1345678999999999999988765443
No 159
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=99.01 E-value=1.5e-10 Score=93.06 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
..+.++||+|+|.|.++..++..+ .+|++.++|..|+.+.++..- + ++ ...+..-.+-++|+|.|.+++.-.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~y--n--Vl--~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNY--N--VL--TEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCC--c--ee--eehhhhhcCceeehHHHHHHHHhh
Confidence 356899999999999999998884 579999999999998875421 1 11 111111123359999999999988
Q ss_pred CCHHHHHHHHHhccCC-CCEEEEEc--c-------CCC--chhHhhhhHHHhhcC-CCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 189 PDPQRGIREAYRVLKL-GGKACIIG--P-------VYP--TFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~p-gG~l~i~~--~-------~~~--~~~~~~~~~~~~~~~-~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
-++-++++.++.+|+| +|.+++.- + +.. ......+.......+ .....+.++|+.+||.+....+++
T Consensus 183 ~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 183 FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 8999999999999999 88887641 1 111 111111222111111 023456789999999999889999
Q ss_pred cccccccccccceeeeEEEEecCCC
Q 022929 256 PKWYRGVRRHGLIMGCSVTGVKPAS 280 (290)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~a~k~~~ 280 (290)
.-+...+.++-+++.+.|.-.||..
T Consensus 263 YLCEGDm~ns~Y~L~Daifvlkp~~ 287 (288)
T KOG3987|consen 263 YLCEGDMHNSFYWLIDAIFVLKPKT 287 (288)
T ss_pred eecccccccceEEecceEEEecCCC
Confidence 8888888888888888877777753
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.01 E-value=5.9e-09 Score=91.77 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=93.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEE-cCCCCCC----CCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVE-GDAEDLP----FPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~-~d~~~l~----~~~~~~D~i 179 (290)
++.++||||||+|.+...++...++++++|+|+++.+++.|+++...+ ++++.. .|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999999888888777899999999999999999886543 355543 3332221 235679999
Q ss_pred EecCcccccCCH-----HHHHHH----------------HHhccCCCCEEEEEccCCCchhHhh----hhHHHhhcCCCH
Q 022929 180 VSAGSIEYWPDP-----QRGIRE----------------AYRVLKLGGKACIIGPVYPTFWLSR----YFADVWMLFPKE 234 (290)
Q Consensus 180 ~~~~~l~~~~~~-----~~~l~~----------------~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~ 234 (290)
+|+--++.-... ..-.+. ..+++.+||.+.++........... ++..+....-+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 997554422211 111222 2355668888776655433221000 001111122478
Q ss_pred HHHHHHHHHCCCcEEEEEEc
Q 022929 235 EEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 235 ~~~~~ll~~aGf~~v~~~~~ 254 (290)
..+.+.|++.|...+.+.++
T Consensus 274 ~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred HHHHHHHHHcCCceEEEEEE
Confidence 99999999999987777776
No 161
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=9.2e-09 Score=95.24 Aligned_cols=135 Identities=23% Similarity=0.298 Sum_probs=91.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC----
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL---- 169 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l---- 169 (290)
+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++++++.|++++. ..+++++.+|+.+.
T Consensus 280 l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 280 LVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 34444444433 25689999999999999999987 5689999999999999998753 34789999998542
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+..+++||+|++.---. .-...+++.+.+ ++|++.++++.. . . |...-...|.+.||++.
T Consensus 357 ~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~-p-~---------------tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN-P-A---------------TLARDLEFLCKEGYGIT 416 (431)
T ss_pred HhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC-H-H---------------HHHHHHHHHHHCCeeEE
Confidence 23345699999643211 112456666554 789887777532 1 1 12222345667899877
Q ss_pred EEEEc
Q 022929 250 QLKRI 254 (290)
Q Consensus 250 ~~~~~ 254 (290)
.+..+
T Consensus 417 ~~~~~ 421 (431)
T TIGR00479 417 WVQPV 421 (431)
T ss_pred EEEEe
Confidence 77654
No 162
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=2.9e-09 Score=87.38 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=96.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhC-----CCCCceEEEcCCCCC--CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDL--PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~v~~~~~d~~~l--~~~~~~~D~i~~ 181 (290)
.+.+|||.+.|-|..++..+++ ++ +|+.++-++..++.|+-|- ...+++++.+|+.++ .+++.+||+|+-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 6899999999999999999998 55 9999999999999998662 123578999998553 478889999984
Q ss_pred cCcccccC---CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 182 AGSIEYWP---DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 182 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.---.... -.+++.+++.|+|||||.++--.-....- +...--...+.+.|+++||++++...
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHHHhcCceeeeeeh
Confidence 21111111 12478999999999999997643222110 11111356888999999998776543
No 163
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.95 E-value=1.1e-08 Score=88.20 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=90.6
Q ss_pred HHHHHHHhHHhHhhhcccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 022929 71 KEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (290)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 150 (290)
...+.||++...-.+.+-+.- .+......++...... .++.|||+|||+|.++...+.. +..+|++++- .+|.+.|
T Consensus 140 ~~YF~~YG~L~~QQNMmQDYV-RTgTY~~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA 215 (517)
T KOG1500|consen 140 SQYFQFYGYLSQQQNMMQDYV-RTGTYQRAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYA 215 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHH
Confidence 345677887766555433221 2223333444443333 7899999999999999888877 4689999997 6677778
Q ss_pred hhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcccccCC---HHHHHHHHHhccCCCCEEEE
Q 022929 151 KQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 151 ~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i 210 (290)
++... ..++.++.+-++++.++++ .|+|++.-+-.-+-+ .+.. -..+++|+|+|.++-
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLPEk-~DviISEPMG~mL~NERMLEsY-l~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELPEK-VDVIISEPMGYMLVNERMLESY-LHARKWLKPNGKMFP 280 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCchh-ccEEEeccchhhhhhHHHHHHH-HHHHhhcCCCCcccC
Confidence 76643 3458889999999888775 999998543332222 2222 245699999999864
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.94 E-value=5.4e-09 Score=87.61 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=82.6
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCC---CCCCCCccEEEecCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL---PFPTDYADRYVSAGSI 185 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l---~~~~~~~D~i~~~~~l 185 (290)
..+||||||.|.++..+|+..|...++|+|+....+..|.+... .+|+.+++.|+..+ -+++++.|-|+.++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 68999999999999999999999999999999988888876532 23788899998543 1445589999876544
Q ss_pred cccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
-|.... ..+++.+.+.|+|||.+.+.+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 333222 269999999999999999987544
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.93 E-value=8.6e-09 Score=86.59 Aligned_cols=131 Identities=19% Similarity=0.100 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH-HhhhCCCCCc-eEEEcCCCC-----CCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAED-----LPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~v-~~~~~d~~~-----l~~~~~~~D~i~~ 181 (290)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.++.. .+++ .++ .+-..|+.. ++..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 37889999999999999999987 45789999999987765 3332 122 122233332 2211124676665
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhh-------hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
+..+ ++..+...|+| |.+++.- .|.+...+ ...+...+..-.+++...+.+.||++..+...
T Consensus 150 S~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 150 SLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 4433 58889999999 7766542 22221111 01111111123567788888899998877654
No 166
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.93 E-value=1.4e-08 Score=90.00 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=82.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCC-CCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF-PTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~-~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. ..+++|+++|+.++.. ..++||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 6799999999999999988743 2468999999976432 23469999986321
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. .-...+++ +...++|++.++++.... . -..++..+ .||++.++..+
T Consensus 251 ~--G~~~~~~~-~l~~~~~~~ivyvsc~p~-t---------------~~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 251 R--GIGKELCD-YLSQMAPRFILYSSCNAQ-T---------------MAKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred C--CccHHHHH-HHHHcCCCeEEEEECCcc-c---------------chhHHhhc---cCcEEEEEEEe
Confidence 1 11122333 334467777777654322 1 12334333 58988877664
No 167
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=4.7e-09 Score=91.16 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
.+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++....+++++++|+.++++++-.
T Consensus 29 ~i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 3455555555443 77899999999999999999984 49999999999999999876556899999999887765422
Q ss_pred ccEEEecC
Q 022929 176 ADRYVSAG 183 (290)
Q Consensus 176 ~D~i~~~~ 183 (290)
+|.|+++-
T Consensus 106 ~~~vv~Nl 113 (272)
T PRK00274 106 PLKVVANL 113 (272)
T ss_pred cceEEEeC
Confidence 47777653
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=7.1e-09 Score=84.31 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=99.8
Q ss_pred cccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCe---------EEEEeCCHHHHHHHhhhCCC
Q 022929 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKEPL 156 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---------v~~vD~s~~~~~~a~~~~~~ 156 (290)
....+.+..+.++..++...... ++..|||.-||+|.++++.+....... ++|+|+++.+++.|++|+..
T Consensus 5 ~~~~~a~L~~~lA~~ll~la~~~-~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 5 PFFGPAPLRPTLAAALLNLAGWR-PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp TSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhCCC-CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 34455667777887777776654 789999999999999998877655555 89999999999999988532
Q ss_pred ----CCceEEEcCCCCCCCCCCCccEEEecCccccc-CC-------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhh
Q 022929 157 ----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW-PD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224 (290)
Q Consensus 157 ----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~-~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 224 (290)
..+.+.+.|+.++++.++++|.|+++--.-.- .. +..+++++.++|++ ..+++...
T Consensus 84 ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~----------- 151 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS----------- 151 (179)
T ss_dssp TT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES-----------
T ss_pred cccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC-----------
Confidence 34788999999998777789999996333211 11 23678899999998 44444332
Q ss_pred HHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
..++...+...+++..+....
T Consensus 152 ---------~~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 152 ---------NRELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp ---------CCCHHHHHTSTTSEEEEEEET
T ss_pred ---------CHHHHHHhcchhhceEEEEEe
Confidence 134556777777776666554
No 169
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.91 E-value=3.8e-09 Score=90.55 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----C----CceEEEcCCCC------CCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAED------LPFPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~----~v~~~~~d~~~------l~~~~ 173 (290)
+++..++|+|||.|..++-+-+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 37889999999999998888766 247899999999999999987431 1 26788998854 23455
Q ss_pred CCccEEEecCcccccC-C---HHHHHHHHHhccCCCCEEEEEccCCCchh----Hh---hhhHHHh--------------
Q 022929 174 DYADRYVSAGSIEYWP-D---PQRGIREAYRVLKLGGKACIIGPVYPTFW----LS---RYFADVW-------------- 228 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~---~~~~~~~-------------- 228 (290)
.+||+|-|.+++|+.- . .+.+++++.+.|+|||+++-..|...... .. .+-++++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 5699999999999652 2 34699999999999999988655432110 00 0000110
Q ss_pred -------h-----------cCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 229 -------M-----------LFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 229 -------~-----------~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
. ....-..+..++++.|++++....+.+-+.
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~ 323 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYE 323 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHH
Confidence 0 001346788999999999998887755433
No 170
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.8e-08 Score=77.84 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCC--CceEEEcCCCCCCCCCCCccEEEecCc--
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGS-- 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~v~~~~~d~~~l~~~~~~~D~i~~~~~-- 184 (290)
....++|||||+|..+..+++.. |+..+.++|+++.+.+..++.+..+ +++.++.|+.+ .+..++.|+++.+--
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 36789999999999999998875 4578999999999998876654433 46678888855 233377998887421
Q ss_pred cccc---------------CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 185 IEYW---------------PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 185 l~~~---------------~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.... .+ .++++.++..+|.|.|.+++...... .++++..+++.-|
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g 185 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKG 185 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhcc
Confidence 1100 01 23677788889999999998754332 4678888999999
Q ss_pred CcEEEEEE
Q 022929 246 FKDVQLKR 253 (290)
Q Consensus 246 f~~v~~~~ 253 (290)
|.+.....
T Consensus 186 ~~~~~~~~ 193 (209)
T KOG3191|consen 186 YGVRIAMQ 193 (209)
T ss_pred cceeEEEE
Confidence 98666544
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.1e-08 Score=77.93 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.+.+|+|+|||+|.+++.++-. +...|+|+|+++++++.+++|... .+++|+..|+.++. ..+|.++++--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 6789999999999999998876 358999999999999999988653 46899999998864 34888888643332
Q ss_pred c---CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 188 W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 188 ~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. .| ..++..+.+.. -.++-. +. ..+.+-++...+++|+.+....+.
T Consensus 121 ~~rhaD-r~Fl~~Ale~s---~vVYsi-H~----------------a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS---DVVYSI-HK----------------AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCC-HHHHHHHHHhh---heEEEe-ec----------------cccHHHHHHHHHhcCCeEEEEEEE
Confidence 2 22 23444444433 122211 11 115678889999999988877543
No 172
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.89 E-value=9.4e-08 Score=81.83 Aligned_cols=141 Identities=21% Similarity=0.128 Sum_probs=99.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC---------------------------------C-
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P- 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------------------------~- 155 (290)
...+||--|||-|.++..++.. +..+.|.|.|--|+-...--+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 5689999999999999999999 889999999988754432100 0
Q ss_pred ---------CCCceEEEcCCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 156 ---------LKECKIVEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 156 ---------~~~v~~~~~d~~~l~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
..+.....+|+.++..++ ++||+|+..+.+...++.-..++.|.++|||||.-+=..|..=.+....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~- 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS- 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence 013445666665543333 6899999998888888888999999999999995443333221111000
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.......-.+.+++..+.++.||++++.+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000111235889999999999999988777
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.88 E-value=6.4e-09 Score=84.13 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=72.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCC----CCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP----FPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~----~~~~~~D~i 179 (290)
++.+|||+|||+|..++.++...+..+|+..|.++ .++..+.|.. ..++.+...|..+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 78999999999999999999886678999999988 8888877643 245677777664311 234579999
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++..++......+.+++.+.++|+++|.+++.....
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999987777899999999999999977765544
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.2e-08 Score=87.96 Aligned_cols=85 Identities=26% Similarity=0.324 Sum_probs=68.7
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 16 RVVDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--
Confidence 4455555555443 6789999999999999999998 5699999999999999998764 35799999999887765
Q ss_pred CccEEEecCcc
Q 022929 175 YADRYVSAGSI 185 (290)
Q Consensus 175 ~~D~i~~~~~l 185 (290)
.+|.|+++.-.
T Consensus 91 ~~d~Vv~NlPy 101 (258)
T PRK14896 91 EFNKVVSNLPY 101 (258)
T ss_pred hceEEEEcCCc
Confidence 38999886554
No 175
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=1.7e-08 Score=83.64 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=82.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC----CCceEEE-cCCCC-CC-CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVE-GDAED-LP-FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~-~d~~~-l~-~~~~~~D~i~~ 181 (290)
..++|||||++.|.-++.++...| +.+++.+|.+++..+.|++++.. .+++.+. +|..+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 678999999999999999999988 78999999999999999988542 3477777 46633 22 34678999996
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
-.. -.++..+++.+.++|+|||.+++-....+
T Consensus 139 Dad---K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 139 DAD---KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred eCC---hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 432 13456899999999999999987654443
No 176
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.82 E-value=9.2e-09 Score=87.45 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-------------------------------CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 158 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------~~ 158 (290)
++.++||||||+-..-..-+... -.+++..|.++..++..++.... ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57899999999865432222221 36799999999888765543110 00
Q ss_pred c-eEEEcCCCCC-CCCC-----CCccEEEecCcccccC-C---HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHH
Q 022929 159 C-KIVEGDAEDL-PFPT-----DYADRYVSAGSIEYWP-D---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (290)
Q Consensus 159 v-~~~~~d~~~l-~~~~-----~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 227 (290)
| .++..|+... |+.. .+||+|++..+++... + ....++++.++|||||.|++.............. ..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~-~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH-KF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE-EE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE-ec
Confidence 2 2667888553 3332 2499999999998764 3 3479999999999999999986654332111000 00
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 228 WMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 228 ~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
.....+.+.+.+.++++||++.+.+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123478999999999999988888
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=3.8e-08 Score=92.51 Aligned_cols=106 Identities=9% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
....+||||||.|.++..+|...|...++|+|++...+..+.+. ....|+.++..|+..+ -++++++|.|+.++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 56789999999999999999999999999999999877766544 2335777887777432 267778999998655
Q ss_pred ccccCCH--------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
=-|.... ..+++.+.+.|+|||.+.+.+...
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 4443221 379999999999999999987543
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=1e-07 Score=77.52 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=91.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH---HHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+++|||+|.|.-++.++-.+|..+++.+|.+.. .++.+.......|+++++..+++ +....+||+|++..+-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 3899999999999999999999999999999985 44445555666789999999987 4455679999998664
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+++-+...+++||.+++.--.... . ..++....++..|.+...+..+.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~-------~-------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGPDAE-------E-------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS--H-------H-------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCCChH-------H-------HHHHHHhHHHHhCCEEeeecccc
Confidence 4667889999999999998775211100 0 23455667777888877777663
No 179
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=9.6e-08 Score=86.68 Aligned_cols=122 Identities=10% Similarity=-0.003 Sum_probs=84.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++... .+++++.+|+.+.. ....+||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4679999999999999999976 67999999999999999987532 36889999986532 112359999875332
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
. .-...+++.+. .++|++.++++... .+. ..++..+ .||++.++..+.
T Consensus 311 ~--G~~~~~l~~l~-~~~p~~ivyvsc~p-~Tl---------------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 R--GIGKELCDYLS-QMAPKFILYSSCNA-QTM---------------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred C--CCcHHHHHHHH-hcCCCeEEEEEeCH-HHH---------------HHHHHHh---cCceEEEEEEec
Confidence 1 11234555554 47898888887421 110 1233333 699888877653
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.76 E-value=3.9e-08 Score=88.50 Aligned_cols=130 Identities=17% Similarity=0.049 Sum_probs=93.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCCCCC----CCCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDAEDL----PFPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~~~l----~~~~~~~D~i 179 (290)
+|++|||+-|-||.++..++.. ++ +|+.||+|..+++.|++|...+ +..++++|+.+. .-...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 5899999999999999999887 55 9999999999999999996543 367999999653 1234479999
Q ss_pred Eec---------CcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 180 VSA---------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 180 ~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
++. ....-..++..++..+.++|+|||.++++++...-. ... -.+.+...+..+|.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~----------f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDL----------FLEIIARAAAAAGRRAQE 363 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHH----------HHHHHHHHHHhcCCcEEE
Confidence 982 111112334579999999999999999987654321 000 123455566666665555
Q ss_pred EE
Q 022929 251 LK 252 (290)
Q Consensus 251 ~~ 252 (290)
+.
T Consensus 364 ~~ 365 (393)
T COG1092 364 IE 365 (393)
T ss_pred ee
Confidence 43
No 181
>PLN02823 spermine synthase
Probab=98.76 E-value=8.8e-08 Score=85.13 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~ 181 (290)
...+||.||+|.|..+..+++..+..+++.+|+++++++.|++... .++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999999887656889999999999999998753 35788999998542 334567999998
Q ss_pred cCccccc---CC----HHHHHH-HHHhccCCCCEEEEE
Q 022929 182 AGSIEYW---PD----PQRGIR-EAYRVLKLGGKACII 211 (290)
Q Consensus 182 ~~~l~~~---~~----~~~~l~-~~~~~L~pgG~l~i~ 211 (290)
... ... +. ...+++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632 211 11 135777 899999999998765
No 182
>PLN02476 O-methyltransferase
Probab=98.75 E-value=6.8e-08 Score=83.27 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CC-C----CCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-F----PTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~-~----~~~~~D~ 178 (290)
+.++||||||++|..++.++...+ +.+++.+|.+++..+.|+++.. ..+++++.+|+.+ ++ + ..++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999999998764 5789999999999999988743 2468899999844 22 1 1357999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
|+...- -.++...++.+.++|+|||.+++-...+
T Consensus 198 VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 198 AFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 997542 2345678999999999999988765443
No 183
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.74 E-value=3.3e-08 Score=81.88 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-----~~~~~~D~ 178 (290)
+..+||||||+.|.-+..+++..| +.+++.+|++++..+.|++++. ..+++++.+|..+. + ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 568999999999999999998876 5899999999999999987643 24689999998542 1 11357999
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|+.... -.++...++.+.++|+|||.+++-.....
T Consensus 125 VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEccc---ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 997543 23566788999999999999988765543
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=3.7e-08 Score=86.14 Aligned_cols=83 Identities=29% Similarity=0.421 Sum_probs=65.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~ 171 (290)
.+...+++..... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++.+|+.+.++
T Consensus 23 ~i~~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCCC-CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 3455555555443 7889999999999999999987 5789999999999999998743 3579999999977655
Q ss_pred CCCCccEEEecC
Q 022929 172 PTDYADRYVSAG 183 (290)
Q Consensus 172 ~~~~~D~i~~~~ 183 (290)
+ .||.|+++.
T Consensus 100 ~--~~d~VvaNl 109 (294)
T PTZ00338 100 P--YFDVCVANV 109 (294)
T ss_pred c--ccCEEEecC
Confidence 3 489888753
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.73 E-value=1.7e-07 Score=80.62 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=65.9
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTD 174 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~~ 174 (290)
.+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++.. ..+++++.+|+..++++
T Consensus 16 ~i~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 16 SVIQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 4555566655543 67899999999999999999984 579999999999999988754 35789999999887765
Q ss_pred Ccc---EEEecCc
Q 022929 175 YAD---RYVSAGS 184 (290)
Q Consensus 175 ~~D---~i~~~~~ 184 (290)
.+| +|+++..
T Consensus 91 ~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 DFPKQLKVVSNLP 103 (253)
T ss_pred HcCCcceEEEcCC
Confidence 366 6666543
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=8.5e-08 Score=78.65 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCC-C-C--CCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-F--PTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l-~-~--~~~~~D~i~~ 181 (290)
.+.+|||++||+|.++..++.+. ..+++++|.++.+++.++++... .+++++..|+.+. . . ....+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999983 35899999999999999887432 3578899998442 1 1 1223788876
Q ss_pred cCcccccCCHHHHHHHHH--hccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAY--RVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~ 213 (290)
.--... .....+++.+. .+|+++|.+++...
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 433321 22344555443 46888888877643
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.67 E-value=7.9e-08 Score=87.09 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|...+ ++++.+.|+..+-...++||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999988765568999999999999999886433 45688888855321135699999753 1
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..+..++..+.+.+++||.+++...
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 3456788887888999999999843
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.67 E-value=1.7e-07 Score=71.66 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCCEEEEEcCccch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~ 183 (290)
++.+|||||||+|. ++..|++. +.+|+++|+++.+++.++++ .++++.+|+.+.++. -+.+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56899999999996 88888876 78999999999999999865 468999999875432 24599999754
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.66 E-value=4.7e-07 Score=70.76 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=93.9
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-- 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-- 170 (290)
...+.+.+.+..... .+.-|||+|.|+|.++..++.+ .+...++++|.|++......+... .+.++.+|+.++.
T Consensus 33 Ss~lA~~M~s~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~l~~~ 109 (194)
T COG3963 33 SSILARKMASVIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFDLRTT 109 (194)
T ss_pred cHHHHHHHHhccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--CccccccchhhHHHH
Confidence 344555656655543 6789999999999999999887 345789999999999999988765 5568899987764
Q ss_pred ---CCCCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccC
Q 022929 171 ---FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ---~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..+..||.|+|.--+-.++... ++++.+...|.+||.++..+..
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4556799999988777777543 7999999999999999887654
No 190
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.65 E-value=4.7e-08 Score=84.68 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCC-C--CCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL-P--FPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l-~--~~~~~~D~i~~ 181 (290)
++++|||+-|-+|.++...+.. +..+|+.||.|..+++.+++|+. ..+++++..|+.+. . -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999999988775 24589999999999999998843 24578999998542 1 12357999998
Q ss_pred c------CcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 182 A------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 182 ~------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. ....-..++.+++..+.++|+|||.|+++++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 2 111111245578999999999999998876543
No 191
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.64 E-value=6.2e-08 Score=88.24 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEE---eCCHHHHHHHhhhCCCCCceEEEc--CCCCCCCCCCCccEEEecCccc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~v~~~~~--d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..+||||||.|.++..++++ +..+..+ |..+..++.|.++.- -.+.+ ....+|+++..||+|.|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGv----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGV----PAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCc----chhhhhhccccccCCccchhhhhcccccc
Confidence 47899999999999999998 4444333 344456777766532 22222 2367899999999999988877
Q ss_pred ccC-CHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 187 YWP-DPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 187 ~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.+. +...+|-++.|+|+|||+++++.+..
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCCcc
Confidence 664 33468889999999999999987654
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.61 E-value=5.9e-07 Score=76.89 Aligned_cols=93 Identities=16% Similarity=0.015 Sum_probs=73.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+.++||=||.|.|..++++++. + .+|+.||+++++++.+++.. ..++++++.. +.+ ...++||+|++.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 6799999999999999999998 3 49999999999999999843 3456666652 211 123579999987
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....+.+.+.+.|+|||.++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 23568899999999999998864
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.2e-07 Score=75.24 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCC-------------CCCceEEEcCCCCCCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP-------------LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~-------------~~~v~~~~~d~~~l~~~~ 173 (290)
+++.+.||+|+|+|.++..++.... +...+|||.-++.++.++++.. ..++.++.+|.....-+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 4899999999999999988886543 3445999999999999988743 235778899998877677
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+||.|.+.... .++.+++...|++||.+++-
T Consensus 161 a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 889999987332 34667888889999999873
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.60 E-value=2.1e-07 Score=85.86 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=69.1
Q ss_pred CCEEEEEcCccchhHHHHHhhC----CCCeEEEEeCCHHHHHHHhhh----CCCCCceEEEcCCCCCCCCCCCccEEEec
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~----~~~~~v~~~~~d~~~l~~~~~~~D~i~~~ 182 (290)
+..|+|||||+|.++...++.. ...+|++||-|+.+....+++ .-.++|+++.+|++++..+. ++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 6789999999999987776552 247999999998877655432 22357999999999988766 59999996
Q ss_pred CcccccCC--HHHHHHHHHhccCCCCEEE
Q 022929 183 GSIEYWPD--PQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 183 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~ 209 (290)
..-....+ ..+.+....+.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 55433322 2357888899999998765
No 195
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=2e-06 Score=71.22 Aligned_cols=131 Identities=19% Similarity=0.164 Sum_probs=97.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHH---HHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+.+++|||+|.|.-++.++-.+|+.+++-+|.... .++.+.+....+|++++++.++++......||+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998888999999999874 5555666677788999999998875321119999987654
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
+...+++-+..++++||.++..-... . . -...+........|+.+..+.....+..
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~~k~~~-------~-~------~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLAYKGLA-------G-K------DELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred --chHHHHHHHHHhcccCCcchhhhHHh-------h-h------hhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 34567788889999998874321000 0 0 0235667777888999999888765544
No 196
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=1.8e-07 Score=79.38 Aligned_cols=104 Identities=25% Similarity=0.273 Sum_probs=83.7
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCcc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D 177 (290)
+..+++... .+..++|+|||.|..+ ...|...++|+|++...+..+++.. .......|+..+|+.+.+||
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~---~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSG---GDNVCRADALKLPFREESFD 105 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCC---CceeehhhhhcCCCCCCccc
Confidence 334455443 5889999999999874 2336778999999999988887432 12578889999999999999
Q ss_pred EEEecCcccccCCH---HHHHHHHHhccCCCCEEEEE
Q 022929 178 RYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 178 ~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+++..++||+... ..+++++.+.|+|||..++-
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999765 47999999999999997664
No 197
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.53 E-value=8e-08 Score=78.27 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=83.1
Q ss_pred cccHHHHHhhccccCCC-CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCC
Q 022929 92 HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA 166 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~ 166 (290)
+.+..+++.+++.+... -++.++||+-||+|.++.+.+.+ +..+|+.||.++.++...++|... .+++.+..|.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 44566666666665532 37899999999999999999888 357999999999999999988431 2477888886
Q ss_pred CC-CC---CCCCCccEEEecCcccccCCHHHHHHHHH--hccCCCCEEEEEccCC
Q 022929 167 ED-LP---FPTDYADRYVSAGSIEYWPDPQRGIREAY--RVLKLGGKACIIGPVY 215 (290)
Q Consensus 167 ~~-l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 215 (290)
.. +. ....+||+|++.--.........+++.+. .+|+++|.+++.....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 32 21 13567999998533221111356777776 7999999998876443
No 198
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.53 E-value=1e-06 Score=76.37 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=79.9
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCCCccEEEecC
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVSAG 183 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~~~D~i~~~~ 183 (290)
++||-||.|.|..+..+.+..+..+++.||+++..++.+++.+. .++++++..|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999878999999999999999998743 25688888888543 22233699999854
Q ss_pred cccccCC----HHHHHHHHHhccCCCCEEEEE
Q 022929 184 SIEYWPD----PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 184 ~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.=.--+. ...+++.+.+.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4331111 157999999999999999887
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.52 E-value=5.8e-07 Score=76.80 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------CCCceEEEcCCCCC-CCCCC-CccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTD-YADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~v~~~~~d~~~l-~~~~~-~~D~i~ 180 (290)
+.++||-||.|.|..+..+.+..+..+++.||+++.+++.+++.+. .++++++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 6799999999999999999988656899999999999999987643 35788999998432 11223 799999
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
....-...+. ...+++.+.+.|+|||.+++........ .. ....+.+.+++... .+....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~--~~----------~~~~i~~tl~~~F~-~v~~~~ 219 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH--PE----------LFKSILKTLRSVFP-QVKPYT 219 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT--HH----------HHHHHHHHHHTTSS-EEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc--hH----------HHHHHHHHHHHhCC-ceEEEE
Confidence 8433221111 2479999999999999998865222110 00 13456677777766 444433
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.52 E-value=1e-06 Score=79.55 Aligned_cols=134 Identities=14% Similarity=0.061 Sum_probs=85.2
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCC-C
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-P 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l-~ 170 (290)
+.+...+.+.+.. .+.+|||++||+|.++..+++. ..+|+++|.++.+++.+++|... .+++++.+|+.+. +
T Consensus 193 e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKG--SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 3344444443332 2357999999999999988887 46899999999999999988532 3688999998552 1
Q ss_pred -CC--------------CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHH
Q 022929 171 -FP--------------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (290)
Q Consensus 171 -~~--------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (290)
+. ..+||+|+..--- ..-.+++++.+.+ |++.++++... .+. ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p-~tl---------------ar 327 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP-ETL---------------CE 327 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH-HHH---------------HH
Confidence 10 1258999874221 1112345555544 67777776432 110 23
Q ss_pred HHHHHHHHCCCcEEEEEEcC
Q 022929 236 EYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 236 ~~~~ll~~aGf~~v~~~~~~ 255 (290)
++..+. + ||++.++..+.
T Consensus 328 Dl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 328 NLETLS-Q-THKVERFALFD 345 (362)
T ss_pred HHHHHc-C-CcEEEEEEEcc
Confidence 344443 3 99888877653
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.51 E-value=4.5e-07 Score=74.63 Aligned_cols=96 Identities=25% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.++.+|+|..||-|.+++.+++..+...|+++|++|.+++..+++.. ..++..+++|..++.. ...+|.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 37899999999999999999996557899999999999999887743 3457889999987654 667999998643
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
- ....++..+..++++||.+.
T Consensus 179 ~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEE
T ss_pred H----HHHHHHHHHHHHhcCCcEEE
Confidence 2 22358888999999998874
No 202
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.51 E-value=4.9e-07 Score=76.92 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC-C-C-----CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l-~-~-----~~~~~D 177 (290)
+.++|||||++.|.-++.++...+ +.+++.+|.+++..+.|+++.. ..+++++.+|..+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 568999999999999999988764 6899999999999999987743 35799999988442 2 1 125799
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+|+...- -..+...++.+.++|+|||.+++-...
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9997533 223457888889999999998775443
No 203
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=7e-08 Score=74.84 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC------CceEEEcCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAE 167 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~v~~~~~d~~ 167 (290)
+.+...+++..... .+.+|||+|.| +|..++.++...|...|+..|-+++.++..++-...+ .+..+..+..
T Consensus 15 eala~~~l~~~n~~-rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~ 93 (201)
T KOG3201|consen 15 EALAWTILRDPNKI-RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHhchhHH-hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence 44555555554433 67899999999 5777788888888899999999999998887643211 1111111110
Q ss_pred --CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 168 --DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 168 --~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
........||.|++..++..-.....+.+.+..+|+|.|.-++..|-... +++.+.+.....|
T Consensus 94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~g 158 (201)
T KOG3201|consen 94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVG 158 (201)
T ss_pred hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhce
Confidence 00122347999999999876666668999999999999998887765543 6788888999999
Q ss_pred CcEEEEEEcCc
Q 022929 246 FKDVQLKRIGP 256 (290)
Q Consensus 246 f~~v~~~~~~~ 256 (290)
|.+.-.++..+
T Consensus 159 f~v~l~enyde 169 (201)
T KOG3201|consen 159 FTVCLEENYDE 169 (201)
T ss_pred eEEEecccHhH
Confidence 98776655543
No 204
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.50 E-value=1.7e-06 Score=75.07 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC-C---ceEEEcCCC-CCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-E---CKIVEGDAE-DLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~---v~~~~~d~~-~l~~~~~~~D~i~~~~ 183 (290)
.+.+|||+|||+|..+..+.+.++ -.+++++|.|+.+++.++...... + ......... ..++. ..|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 567999999999988777777665 368999999999999988653311 1 111111111 11222 249999999
Q ss_pred cccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+|..+++. ..+++++.+.+++ .|+++++..+.
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 99988873 2466666666655 88888887654
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.48 E-value=1.5e-06 Score=78.26 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=71.4
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC--
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-- 170 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~-- 170 (290)
.+...+++.+.. .+.+|||++||+|.++..+++.. .+|+|+|+++++++.|+++... .+++++.+|+.++-
T Consensus 185 ~l~~~v~~~~~~--~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 185 KMLEWACEVTQG--SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHhhc--CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 344444444332 23479999999999999998884 5999999999999999988543 36889999985521
Q ss_pred ------C---C-----CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 171 ------F---P-----TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 171 ------~---~-----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+ . ...||+|+..--- ..-...+++.+.+ |++.++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 0 1137988863221 1112345555543 778887764
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=9.2e-07 Score=75.17 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=70.8
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+.+.+++..... +++.|||||+|.|.++..+++. +.+|+++|+++..++..++... ..+++++.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 34566777776665 5899999999999999999999 6789999999999999998864 678999999998887765
Q ss_pred C-CccEEEec
Q 022929 174 D-YADRYVSA 182 (290)
Q Consensus 174 ~-~~D~i~~~ 182 (290)
- .++.|+++
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 2 47888765
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=4.8e-06 Score=77.29 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC-CCCCCccEEEe--
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVS-- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~-~~~~~~D~i~~-- 181 (290)
.++.+|||++||+|.-+..++...++ ..++++|+++.-++..+++.. ..++.+...|...+. ...+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 48899999999999999999988643 689999999998888887643 356777888876543 22346999994
Q ss_pred --c--CcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 182 --A--GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 182 --~--~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+ .++..-++ ..++|..+.++|||||.|+.+++....
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2 22222111 136899999999999999988876543
No 208
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.43 E-value=1.6e-06 Score=73.77 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=81.5
Q ss_pred CEEEEEcCcc--chhHHHHH-hhCCCCeEEEEeCCHHHHHHHhhhCCC-CC--ceEEEcCCCCCC-----------CCCC
Q 022929 112 MLVVDVGGGT--GFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQKEPL-KE--CKIVEGDAEDLP-----------FPTD 174 (290)
Q Consensus 112 ~~vLDiG~G~--G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~--v~~~~~d~~~l~-----------~~~~ 174 (290)
...||||||- -...-.++ +..|..+|+.+|.++-.+..++..+.. .+ ..++.+|+.+.. +.-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 6799999993 23344444 446889999999999999998876443 34 789999997632 1112
Q ss_pred CccEEEecCcccccCC---HHHHHHHHHhccCCCCEEEEEccCCCchhHh-hhhHHH------hhcCCCHHHHHHHHHHC
Q 022929 175 YADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYFADV------WMLFPKEEEYIEWFQKA 244 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~ll~~a 244 (290)
+.=.+++..++||+++ +..+++.+...|.||.+|.++.......... ...... ....+|.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 2336778899999965 5689999999999999999986655432111 111111 123578999999988
Q ss_pred CCcEEE
Q 022929 245 GFKDVQ 250 (290)
Q Consensus 245 Gf~~v~ 250 (290)
||++++
T Consensus 228 g~elve 233 (267)
T PF04672_consen 228 GLELVE 233 (267)
T ss_dssp TSEE-T
T ss_pred CCccCC
Confidence 898664
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=6.1e-07 Score=78.15 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCC--CCC
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP--FPT 173 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~--~~~ 173 (290)
...+++.+.. .++..+||++||.|.++..+++..+ ..+|+|+|.++++++.++++... .+++++++|+.++. .++
T Consensus 8 l~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 3445555543 3778999999999999999999975 58999999999999999987643 57899999997653 222
Q ss_pred --CCccEEEec
Q 022929 174 --DYADRYVSA 182 (290)
Q Consensus 174 --~~~D~i~~~ 182 (290)
.++|.|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 269999873
No 210
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=9.1e-06 Score=65.57 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=86.0
Q ss_pred cccHHHHHhhccccCC-CCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCC
Q 022929 92 HWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~ 166 (290)
+.+..+++.+++.+.. .-.+.++||+-+|||.++.+.+.+ +...++.+|.+..+....++|.. ..+++++..|.
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 4456666677766654 237899999999999999999998 36899999999999999998843 24577788887
Q ss_pred CCC-CCCCC--CccEEEecCccc-ccCCHHHHHHH--HHhccCCCCEEEEEccC
Q 022929 167 EDL-PFPTD--YADRYVSAGSIE-YWPDPQRGIRE--AYRVLKLGGKACIIGPV 214 (290)
Q Consensus 167 ~~l-~~~~~--~~D~i~~~~~l~-~~~~~~~~l~~--~~~~L~pgG~l~i~~~~ 214 (290)
... +.... +||+|+..--.+ .+-+....+.. -..+|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 532 11222 499999854444 11112223333 45789999999987543
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7.3e-07 Score=68.02 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+++++|+|||.|-+...... +....|+|+|+++++++.+..|+.. -++++.++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 789999999999999854443 3467899999999999999988653 357889999988877778899999865443
No 212
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.35 E-value=1.1e-05 Score=62.93 Aligned_cols=101 Identities=31% Similarity=0.397 Sum_probs=73.2
Q ss_pred EEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCC--C-ceEEEcCCCC--CCCCC-CCccEEEecCccc
Q 022929 114 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK--E-CKIVEGDAED--LPFPT-DYADRYVSAGSIE 186 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~-v~~~~~d~~~--l~~~~-~~~D~i~~~~~l~ 186 (290)
++|+|||+|... .+....+. ..++++|+++.++..++...... . +.+...|... +++.. ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33343222 48999999999998865543211 1 5778888765 67766 4799994444444
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+.. ....+.++.+.++|+|.+++......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444 78899999999999999988766543
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.33 E-value=3.2e-06 Score=71.25 Aligned_cols=83 Identities=27% Similarity=0.386 Sum_probs=68.4
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~ 170 (290)
..+.+.+++..... +.+.|||||.|+|.++..+.+. +.+|+++|+++.++....++... ...+++.+|+...+
T Consensus 44 p~v~~~I~~ka~~k-~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLK-PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCC-CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 34566667776664 8899999999999999999999 89999999999999999888542 45889999997765
Q ss_pred CCCCCccEEEec
Q 022929 171 FPTDYADRYVSA 182 (290)
Q Consensus 171 ~~~~~~D~i~~~ 182 (290)
++. ||.++++
T Consensus 121 ~P~--fd~cVsN 130 (315)
T KOG0820|consen 121 LPR--FDGCVSN 130 (315)
T ss_pred Ccc--cceeecc
Confidence 543 9999874
No 214
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=8.2e-06 Score=74.99 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=94.6
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~l~ 170 (290)
.+.+...+++.+... ++.++||+=||.|.+++.+++. ..+|+|+|+++++++.|++++.. .|++|..++.+++.
T Consensus 278 ~ekl~~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELA-GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 344555556655543 6789999999999999999977 68999999999999999988543 45889999997764
Q ss_pred CC---CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 171 FP---TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 171 ~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
.. ...+|.|+..---.-. .+.+++.+ ..++|...++++.... |...=...|.+.|++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l-~~~~p~~IvYVSCNP~-----------------TlaRDl~~L~~~gy~ 414 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA--DREVLKQL-AKLKPKRIVYVSCNPA-----------------TLARDLAILASTGYE 414 (432)
T ss_pred hhccccCCCCEEEECCCCCCC--CHHHHHHH-HhcCCCcEEEEeCCHH-----------------HHHHHHHHHHhCCeE
Confidence 22 2468999853111100 12344444 4456778888875321 233334677778987
Q ss_pred EEEEEEcC
Q 022929 248 DVQLKRIG 255 (290)
Q Consensus 248 ~v~~~~~~ 255 (290)
+.++..+.
T Consensus 415 i~~v~~~D 422 (432)
T COG2265 415 IERVQPFD 422 (432)
T ss_pred EEEEEEec
Confidence 76666543
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.28 E-value=7.4e-06 Score=80.27 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=87.2
Q ss_pred CCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhC----C-------------------------------
Q 022929 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV----D------------------------------- 133 (290)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~------------------------------- 133 (290)
.+.+..+.++..++.......++..++|.+||+|.++++.+... |
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 44567788888888776653467899999999999998886531 0
Q ss_pred -------CCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC--CCCccEEEecCccc-ccC---CHHHHHH
Q 022929 134 -------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP--TDYADRYVSAGSIE-YWP---DPQRGIR 196 (290)
Q Consensus 134 -------~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~--~~~~D~i~~~~~l~-~~~---~~~~~l~ 196 (290)
..+++|+|+++.+++.|++|... ..+++.++|+.+++.+ .+++|+|+++--.. .+. +...+.+
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 13699999999999999998543 2478999999877543 34699999973321 111 2233444
Q ss_pred HHHhccC---CCCEEEEEcc
Q 022929 197 EAYRVLK---LGGKACIIGP 213 (290)
Q Consensus 197 ~~~~~L~---pgG~l~i~~~ 213 (290)
.+.+.++ +|+.+++.+.
T Consensus 329 ~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeC
Confidence 4444443 8888877654
No 216
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.27 E-value=1.6e-05 Score=70.25 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----CCCeEEEEeCCHHHHHHHhhhCC-C--CCceE--EEcCCCC----CCC--CCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP-L--KECKI--VEGDAED----LPF--PTD 174 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~~~-~--~~v~~--~~~d~~~----l~~--~~~ 174 (290)
++..|+|+|||+|.-+..+++.+ ....|+++|+|.++++.+.++.. . +.+++ +++|..+ ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 66789999999998766655543 24789999999999999988765 2 34554 7777744 221 122
Q ss_pred CccEEEe-cCcccccCCHH--HHHHHHHh-ccCCCCEEEEEc
Q 022929 175 YADRYVS-AGSIEYWPDPQ--RGIREAYR-VLKLGGKACIIG 212 (290)
Q Consensus 175 ~~D~i~~-~~~l~~~~~~~--~~l~~~~~-~L~pgG~l~i~~ 212 (290)
...+++. .+++.+++..+ .+|+++++ .|+|||.+++..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3455554 45777776554 69999999 999999988854
No 217
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=5.6e-06 Score=66.57 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC--ceEEEcCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTD 174 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--v~~~~~d~~~l~~~~~ 174 (290)
+.+.+++.-... .+++|||+|+|+|..++..++. +...|+..|+.+.....++-|...+. +.+...|.-. .+.
T Consensus 67 lAR~i~~~PetV-rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPETV-RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCcccc-ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 344445544433 7899999999999999988887 35789999999888888877766554 5566666644 344
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCch
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 218 (290)
.||+++...++..-+-..+++.-..++...|-.+++-++.....
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred ceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 59999999888766666677775555555666677777766554
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.26 E-value=2.1e-06 Score=71.13 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------C--CCCCceEEEc
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------E--PLKECKIVEG 164 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~--~~~~v~~~~~ 164 (290)
....+++.+... +++..+|+|||.|.....++...+-.+.+|||+.+...+.|+.. . ....+++..+
T Consensus 30 ~~~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344555666553 78999999999999988888776556799999999877776542 1 1235778888
Q ss_pred CCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 165 DAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 165 d~~~l~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+.+.++.. ...|+|++++... -++....+.+....||+|.+++-..+
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred CccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 886533111 2379999988753 23344556777788898888765433
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.25 E-value=1.3e-05 Score=66.31 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=83.9
Q ss_pred EEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCC-CccEEEecCccccc
Q 022929 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD-YADRYVSAGSIEYW 188 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~-~~D~i~~~~~l~~~ 188 (290)
|.||||..|.+...|.+.....+++++|+++.-++.|+++.. ..++++..+|-.+ ++..+ ..|.|+...+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 689999999999999999655789999999999999987733 3469999999654 22333 37888876654321
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+++++....++....+++.. .. ....++.+|.+.||.+++..-+.+
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP-~~-----------------~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQP-NT-----------------HAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEE-SS------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeC-CC-----------------ChHHHHHHHHHCCCEEEEeEEEeE
Confidence 2357777777776655666543 22 457899999999999988877643
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.24 E-value=7.7e-05 Score=61.64 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=94.7
Q ss_pred ccHHHHHhhccccC--CCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcC
Q 022929 93 WTEDMRDDALEPAD--LSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (290)
Q Consensus 93 ~~~~~~~~~l~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d 165 (290)
+...+...++..+. ...++.+||-+|+.+|....+++.-.+ .+.|++|+.|+ +.+..|++ +.|+--+..|
T Consensus 54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~D 130 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILED 130 (229)
T ss_dssp TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-
T ss_pred hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeecc
Confidence 34455555544432 224899999999999999999999865 68999999999 45555664 3578778899
Q ss_pred CCCCC---CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 166 ~~~l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
+.... ..-+.+|+|++.-. .-.+.+-++.++...||+||.+++.--... .......... ..+-.+.|+
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s-iD~t~~p~~v------f~~e~~~L~ 201 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARS-IDSTADPEEV------FAEEVKKLK 201 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHH-H-SSSSHHHH------HHHHHHHHH
T ss_pred CCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCc-ccCcCCHHHH------HHHHHHHHH
Confidence 86521 12236999997432 112223577888899999999988632100 0000000000 133456778
Q ss_pred HCCCcEEEEEEcCccc
Q 022929 243 KAGFKDVQLKRIGPKW 258 (290)
Q Consensus 243 ~aGf~~v~~~~~~~~~ 258 (290)
+.||++.+...+.+..
T Consensus 202 ~~~~~~~e~i~LePy~ 217 (229)
T PF01269_consen 202 EEGFKPLEQITLEPYE 217 (229)
T ss_dssp CTTCEEEEEEE-TTTS
T ss_pred HcCCChheEeccCCCC
Confidence 8899999998886643
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=5.9e-05 Score=67.95 Aligned_cols=109 Identities=22% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRY 179 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i 179 (290)
..++.+|||..++.|.=+..+++..++ ..|+++|.++.-+...+++.. ..++.....|...++ ...++||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 358899999999999999999988654 567999999988888877644 345667777775443 222359999
Q ss_pred Ee------cCcccccCC----------------HHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 180 VS------AGSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 180 ~~------~~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+. ..++.--|+ ..++|+.+.++|||||.|+.+++...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 87 233322222 12689999999999999999887653
No 222
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.20 E-value=3.6e-06 Score=75.42 Aligned_cols=103 Identities=26% Similarity=0.282 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
++..++|+|||.|.....++.. ....++|+|.++..+..+..... .+...++..|+-.-|+++..||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 6678999999999998888776 46899999999988877765421 223345788888889999999999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|.++....++++.++++|||..+..+.
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 9999999999999999999999988654
No 223
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=2.1e-05 Score=69.61 Aligned_cols=142 Identities=23% Similarity=0.194 Sum_probs=100.2
Q ss_pred cccCCCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC----CceE
Q 022929 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKI 161 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~v~~ 161 (290)
-++.|+..++..+ ++... .+|.+|||.=||-|.+++.+++.. ...|+++|++|.+++..++|...+ .+..
T Consensus 169 v~Fsprl~~ER~R--va~~v---~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~ 242 (341)
T COG2520 169 VYFSPRLSTERAR--VAELV---KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEP 242 (341)
T ss_pred eEECCCchHHHHH--HHhhh---cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeE
Confidence 4555554444432 23333 268999999999999999999983 334999999999999999886543 3778
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHH
Q 022929 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (290)
Q Consensus 162 ~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 241 (290)
+++|..........+|-|++...- +.+.++..+.+.+++||.+..-+......... .....+.+..
T Consensus 243 i~gD~rev~~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~ 308 (341)
T COG2520 243 ILGDAREVAPELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAA 308 (341)
T ss_pred EeccHHHhhhccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHH
Confidence 999998776554669999987543 34568888999999999987765544321100 1245666777
Q ss_pred HHCCCc
Q 022929 242 QKAGFK 247 (290)
Q Consensus 242 ~~aGf~ 247 (290)
.+.|++
T Consensus 309 ~~~~~~ 314 (341)
T COG2520 309 RKGGYK 314 (341)
T ss_pred hhccCc
Confidence 777764
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.2e-05 Score=65.34 Aligned_cols=131 Identities=19% Similarity=0.264 Sum_probs=92.6
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCCCCCCC--CC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFP--TD 174 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~~l~~~--~~ 174 (290)
+..+.. .++.+|||-|+|+|.++..+++.. |..+++.+|+-+.-.+.|.+.+ -..++++..-|++..-|. +.
T Consensus 98 ~~~L~i-~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEI-RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcC-CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 444444 389999999999999999999885 4589999999877666666543 246789999999765433 45
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCE-EEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
.+|.|+. .++.|...+-.+..+||.+|. ++-.+++... .+.-.+.|+++||..++..+
T Consensus 177 ~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQ----------------vqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQ----------------VQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHHHH----------------HHHHHHHHHhCCCceEEEEE
Confidence 6888885 467777777888889998774 4333332211 12334678888997666655
Q ss_pred c
Q 022929 254 I 254 (290)
Q Consensus 254 ~ 254 (290)
+
T Consensus 236 v 236 (314)
T KOG2915|consen 236 V 236 (314)
T ss_pred e
Confidence 4
No 225
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.15 E-value=2e-06 Score=70.11 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------C--C--CCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------P--F--PTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~--~--~~~~~D~ 178 (290)
++.+|||+||++|.++..+.++. +..+|+|+|+.+.. ..+++.++++|+.+. . + ..+++|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 45899999997651 113444445554221 1 1 1257999
Q ss_pred EEecCcccccCCH-----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 179 YVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 179 i~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
|+|........+. ...+.-+...|+|||.+++....... . +++...++. .|+
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~---------------~-~~~~~~l~~-~F~ 157 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE---------------I-EELIYLLKR-CFS 157 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT---------------S-HHHHHHHHH-HHH
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc---------------H-HHHHHHHHh-CCe
Confidence 9997644333221 13455566789999988876543221 1 245555554 566
Q ss_pred EEEEEEc
Q 022929 248 DVQLKRI 254 (290)
Q Consensus 248 ~v~~~~~ 254 (290)
.+.+.+.
T Consensus 158 ~v~~~Kp 164 (181)
T PF01728_consen 158 KVKIVKP 164 (181)
T ss_dssp HEEEEE-
T ss_pred EEEEEEC
Confidence 6666553
No 226
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.9e-05 Score=62.30 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=88.1
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------- 170 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------- 170 (290)
++.+...+..++..|+|+|+-+|.++..+++..+. ..|+++|+.+-. ...++.++++|+...+
T Consensus 35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------~~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------PIPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------cCCCceEEeeeccCccHHHHHHHH
Confidence 33444555568999999999999999999988643 559999994422 2246899999997643
Q ss_pred CCCCCccEEEecCcc---ccc--CCH------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHH
Q 022929 171 FPTDYADRYVSAGSI---EYW--PDP------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l---~~~--~~~------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+....+|+|+|...- .+. .++ ...+.-+..+|+|||.+++-.+-.. ..+++.+
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------------~~~~~l~ 170 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------------DFEDLLK 170 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------------CHHHHHH
Confidence 444557999974332 111 111 2466677789999999988755433 2344555
Q ss_pred HHHHCCCcEEEEEEcC
Q 022929 240 WFQKAGFKDVQLKRIG 255 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~ 255 (290)
.+++ .|+.+++....
T Consensus 171 ~~~~-~F~~v~~~KP~ 185 (205)
T COG0293 171 ALRR-LFRKVKIFKPK 185 (205)
T ss_pred HHHH-hhceeEEecCc
Confidence 5554 58877776643
No 227
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.14 E-value=2.6e-05 Score=69.15 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-------CCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCC--CC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFP--TD 174 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-------~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~--~~ 174 (290)
.++.+|+|.+||+|.++..+.+.. +...++|+|+++.+...++-+.. ..+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 367799999999999998887742 57899999999999998876521 12245778887544322 46
Q ss_pred CccEEEecCccccc--C------------------CH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCC
Q 022929 175 YADRYVSAGSIEYW--P------------------DP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (290)
Q Consensus 175 ~~D~i~~~~~l~~~--~------------------~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (290)
+||+|+++--+... . +. -.++..+.+.|++||++.++.+..- .+.. ..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~------L~~~-----~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF------LFSS-----SS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH------HHGS-----TH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh------hhcc-----ch
Confidence 79999994211111 0 01 1578889999999999877654210 0000 01
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCcccccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~~~~ 261 (290)
...+++.|-+.+. +..+..++......
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 3567766666544 67778887655444
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.12 E-value=2.7e-05 Score=68.38 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=89.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCCCCceEEEcCCCCC-CCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAEDL-PFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~v~~~~~d~~~l-~~~~~~~D~ 178 (290)
...+||-+|.|.|..+..+.+.-+..+++-+|++|.|++.++++ ...++++++..|.... .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45789999999999999998873368999999999999999854 2235688888888653 223346999
Q ss_pred EEecCcccccCCH----------HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 179 YVSAGSIEYWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 179 i~~~~~l~~~~~~----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
|+.. ++|| .++..-+.+.|+++|.+++.....-. ..+ .--.+...++++||.+
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~----------vfw~i~aTik~AG~~~ 431 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPR----------VFWRIDATIKSAGYRV 431 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCc----------eeeeehhHHHhCccee
Confidence 9863 2332 25778889999999999886422100 000 1123456788899876
Q ss_pred EEEEE
Q 022929 249 VQLKR 253 (290)
Q Consensus 249 v~~~~ 253 (290)
.-...
T Consensus 432 ~Pyhv 436 (508)
T COG4262 432 WPYHV 436 (508)
T ss_pred eeeEE
Confidence 55544
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.00031 Score=56.98 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=100.5
Q ss_pred cccHHHHHhhccccC--CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh-CCCCCceEEEcCCCC
Q 022929 92 HWTEDMRDDALEPAD--LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAED 168 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~v~~~~~d~~~ 168 (290)
++...+...++.-+. ..+++.+||=+|+-+|....+++.-.+...+++++.|+......-.. ..++|+--+..|+..
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 345666666666543 23589999999999999999999998878999999998654433222 124677778889866
Q ss_pred CC---CCCCCccEEEecCcccccCCH---HHHHHHHHhccCCCCEEEEEccCC--Cch-hHhhhhHHHhhcCCCHHHHHH
Q 022929 169 LP---FPTDYADRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVY--PTF-WLSRYFADVWMLFPKEEEYIE 239 (290)
Q Consensus 169 l~---~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.. .--+..|+|+.. +..+ +-+..++...||+||.+++.--.. +.. ..... ..+-.+
T Consensus 136 P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~ 200 (231)
T COG1889 136 PEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVE 200 (231)
T ss_pred cHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHH
Confidence 32 222458999853 3233 247788999999999877752211 100 00111 123346
Q ss_pred HHHHCCCcEEEEEEcCcc
Q 022929 240 WFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 240 ll~~aGf~~v~~~~~~~~ 257 (290)
.|++.||++.+...+.+.
T Consensus 201 kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 201 KLEEGGFEILEVVDLEPY 218 (231)
T ss_pred HHHhcCceeeEEeccCCc
Confidence 678889999999888653
No 230
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=5.2e-05 Score=60.94 Aligned_cols=162 Identities=19% Similarity=0.103 Sum_probs=100.3
Q ss_pred ccccCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHH----------HHHHhhhCCCCCceEEEcCCCCCC
Q 022929 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQ----------LAKAKQKEPLKECKIVEGDAEDLP 170 (290)
Q Consensus 102 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~----------~~~a~~~~~~~~v~~~~~d~~~l~ 170 (290)
|...++. ++.+|+|+-.|.|.++.-+....+ ...|+++-..+.. -..+++ ....|++.+..+...+.
T Consensus 41 L~FaGlk-pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLK-PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEeccC-CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 4444554 899999999999999999888753 3567776543321 111111 11235555555555554
Q ss_pred CCCCCccEEEecCccccc-------CCHHHHHHHHHhccCCCCEEEEEccCCCc-hhHhhhhHHHhhcCCCHHHHHHHHH
Q 022929 171 FPTDYADRYVSAGSIEYW-------PDPQRGIREAYRVLKLGGKACIIGPVYPT-FWLSRYFADVWMLFPKEEEYIEWFQ 242 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (290)
+....|+++....-|.+ ....++...+.+.|||||.+.++++.... ..... .....+.+...++...+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d---t~~~~ri~~a~V~a~ve 194 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD---TITLHRIDPAVVIAEVE 194 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh---hhhhcccChHHHHHHHH
Confidence 33447777664333222 22457899999999999999999876543 11111 11223457888999999
Q ss_pred HCCCcEEEEEEcC--ccccccccccccee
Q 022929 243 KAGFKDVQLKRIG--PKWYRGVRRHGLIM 269 (290)
Q Consensus 243 ~aGf~~v~~~~~~--~~~~~~~~~~~~~~ 269 (290)
.+||...-..++. +.--.++|.++-+.
T Consensus 195 aaGFkl~aeS~ilaNp~D~~~i~v~dp~~ 223 (238)
T COG4798 195 AAGFKLEAESEILANPDDPRGIWVFDPTI 223 (238)
T ss_pred hhcceeeeeehhhcCCCCCCceeecCccc
Confidence 9999887776664 33334555554443
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.07 E-value=1.6e-05 Score=71.85 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=78.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCC-CCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~-~~~~~~D~i~~~~~l 185 (290)
+.+|||..||+|..++.++...+ ..+|+++|+++++++.+++|...+ ++++++.|+..+- ....+||+|...- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 36899999999999999998753 478999999999999999886433 4678888886532 1234699998743 2
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..+..++..+.+.++++|.|++...
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 3445799999999999999999744
No 232
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.07 E-value=0.00011 Score=64.71 Aligned_cols=87 Identities=22% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.++||+||++|.++..+++. +.+|++||..+ +- ......++|..+..|........+.+|.++|..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~---~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve--- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MA---QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE--- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cC---HhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---
Confidence 47899999999999999999998 77999999644 22 22233467888888875543225679999987664
Q ss_pred CCHHHHHHHHHhccCCC
Q 022929 189 PDPQRGIREAYRVLKLG 205 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pg 205 (290)
.|.++++-+.++|..|
T Consensus 281 -~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 -KPARVAELMAQWLVNG 296 (357)
T ss_pred -CHHHHHHHHHHHHhcC
Confidence 5778888888888766
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=2.2e-05 Score=67.81 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=76.0
Q ss_pred HHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-CCCceEEEcCCCCCCCCC
Q 022929 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (290)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~v~~~~~d~~~l~~~~ 173 (290)
..+.+.+++.+... ++..|||||+|.|.++..+++. +.+++++|+++...+..++... ..+++++.+|+.++....
T Consensus 16 ~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 45666777766654 7899999999999999999999 4899999999999999998765 568999999998876543
Q ss_pred ---CCccEEEecCcccccCCHHHHHHHHHhccCC
Q 022929 174 ---DYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (290)
Q Consensus 174 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 204 (290)
.....|+++--. ++ ...++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 234456654222 22 23566666663333
No 234
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.02 E-value=2.8e-05 Score=73.87 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC--------CCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCC-----CCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDL-----PFPT 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l-----~~~~ 173 (290)
...+|||.|||+|.++..+++..+ ...++|+|+++.++..++.+.... .+.+...|.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356999999999999999887653 257899999999999998774321 234444443211 1112
Q ss_pred CCccEEEec
Q 022929 174 DYADRYVSA 182 (290)
Q Consensus 174 ~~~D~i~~~ 182 (290)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 469999985
No 235
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=3.5e-06 Score=65.07 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=59.1
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHH
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~ 192 (290)
-.+-||||. .+..|++..+-++-.+ .+.+++-.....+|.+++.|+|++.++++|+.-.+
T Consensus 5 ~kv~ig~G~-------~r~npgWi~~d~ed~~-------------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E 64 (185)
T COG4627 5 EKVKIGAGG-------KRVNPGWIITDVEDRP-------------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE 64 (185)
T ss_pred eEEEEeccc-------cccCCCceeeehhccc-------------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH
Confidence 467789997 3445666655333211 23333333345578899999999999999996543
Q ss_pred --HHHHHHHhccCCCCEEEEEccCC
Q 022929 193 --RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 193 --~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..++++++.|||||+|-+..+..
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 79999999999999999986643
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.98 E-value=3.4e-05 Score=62.37 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----------CCCceEEEcCCCC-CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
+...+.|||||.|.++..++..+|+.-+.|.+|--.+.+..+++.. ..|+.....+... +| +-|.-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhh
Confidence 3467999999999999999999999999999997766666655411 2345555554432 12 11222
Q ss_pred EEecCcccccCCHH-------------HHHHHHHhccCCCCEEEEEccCC
Q 022929 179 YVSAGSIEYWPDPQ-------------RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 179 i~~~~~l~~~~~~~-------------~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
-...-.+...++++ .++.+..-+|++||.++.++...
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 22222333344442 47888889999999999886543
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.96 E-value=9.8e-05 Score=65.97 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=88.1
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC--------------------------------C--
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--------------------------------K-- 135 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--------------------------------~-- 135 (290)
+.+..+.++..++...+-. ++..++|-=||+|.++++.+...++ .
T Consensus 172 ~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 172 PAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 4466778888877776654 6679999999999999998876431 1
Q ss_pred -----eEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCccc-ccCC-------HHHHHHHH
Q 022929 136 -----NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIE-YWPD-------PQRGIREA 198 (290)
Q Consensus 136 -----~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~-~~~~-------~~~~l~~~ 198 (290)
.++|+|+++.+++.|+.|+.. .-|+|.+.|+..++-+-+.+|+|+|+--.- -+.+ +..+.+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 378999999999999988543 348999999988764435699999963211 1111 12455566
Q ss_pred HhccCCCCEEEEEc
Q 022929 199 YRVLKLGGKACIIG 212 (290)
Q Consensus 199 ~~~L~pgG~l~i~~ 212 (290)
.+.++.-+..++++
T Consensus 331 k~~~~~ws~~v~tt 344 (381)
T COG0116 331 KRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCceEEEEc
Confidence 67777667777764
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.4e-05 Score=62.19 Aligned_cols=146 Identities=22% Similarity=0.201 Sum_probs=94.5
Q ss_pred hhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCce-EEEcCCCCCC---CCCCC
Q 022929 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECK-IVEGDAEDLP---FPTDY 175 (290)
Q Consensus 100 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~-~~~~d~~~l~---~~~~~ 175 (290)
.+++......++..+||||+.+|.++..+.++ +..+|+++|.....+..--++- +++. +-..|+..+. +.+ .
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d--~rV~~~E~tN~r~l~~~~~~~-~ 144 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRND--PRVIVLERTNVRYLTPEDFTE-K 144 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcC--CcEEEEecCChhhCCHHHccc-C
Confidence 44555555568999999999999999999988 4689999999876665543322 2322 3334554332 333 5
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh-------hHHHhhcCCCHHHHHHHHHHCCCcE
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-------FADVWMLFPKEEEYIEWFQKAGFKD 248 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~aGf~~ 248 (290)
.|+++|.-++-. ...+|..+..+++|++.++...- |.+...+- ..+...+..-..++.+++.+.||++
T Consensus 145 ~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvK--PQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 145 PDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVK--PQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred CCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEec--chhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 889998765543 34689999999999998876421 11111110 1111111113578889999999998
Q ss_pred EEEEEc
Q 022929 249 VQLKRI 254 (290)
Q Consensus 249 v~~~~~ 254 (290)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 887654
No 239
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=4.6e-05 Score=63.01 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCC-CC-----CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~-l~-----~~~~~~D~ 178 (290)
.++++||||.=+|.-++.++...| +++|+++|++++..+.+..... ...+++++++..+ ++ ...+.||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999999999999999988877 4899999999999988865422 3468888887743 21 34567999
Q ss_pred EEecCccccc-CCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 179 YVSAGSIEYW-PDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 179 i~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++.. ++ .++....+++.+++++||.+++-...++
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEeccccC
Confidence 9853 33 3445788999999999999988654433
No 240
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=4.9e-05 Score=62.06 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCC--CCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDL--PFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l 185 (290)
++.+||+||-|-|.....+.+..| .+-+.++..++.+++.++..- ..|+..+.+-.++. .++++.||-|+...--
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 799999999999999888887754 566789999999999998743 34666666655432 3677889999976655
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+-.+...+.+.+.++|||+|++-..
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 66666677888999999999998654
No 241
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00017 Score=62.28 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=101.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHH-------HhhhCC----------------CC---------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-------AKQKEP----------------LK--------- 157 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-------a~~~~~----------------~~--------- 157 (290)
...+||--|||.|.++..++.. +..+-|-+.|--|+-- .+.... .+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999988 6667777776554422 111000 00
Q ss_pred -----------CceEEEcCCCCC---CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh
Q 022929 158 -----------ECKIVEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (290)
Q Consensus 158 -----------~v~~~~~d~~~l---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 223 (290)
....-.+|+.+. +-..+.||+|+.++.+....+.-..++.+..+|||||+-+=..|..-.+....-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 011122444221 111246999998877777777778999999999999987655443211100000
Q ss_pred hHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcccccccccc--cceeeeEEEEecCC
Q 022929 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH--GLIMGCSVTGVKPA 279 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~--~~~~~~~~~a~k~~ 279 (290)
..+.-..-.+.+++..+++..||++++.+.+...+...-++. ..+....++.||+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~ 365 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPC 365 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEeccc
Confidence 000111124789999999999999998886654443221111 22334456777764
No 242
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.90 E-value=8.6e-05 Score=67.85 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=83.2
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+++.+|||.-.+...+.+. +...++.+|+|+..++....+.. .....+...|+..+.|++++||+|+....++++-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999999888887 35789999999999988876542 34478889999999999999999999988887732
Q ss_pred H----------HHHHHHHHhccCCCCEEEEEcc
Q 022929 191 P----------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 191 ~----------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+.++.++|++||+++....
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 2467899999999999877655
No 243
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.88 E-value=3.2e-05 Score=61.78 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=76.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
..+.+.|+|+|+|.++...++. ..+|++++.++...+.|.+|.. ..+++++.+|+.+..|. ..|+|+|-..=.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlDT 107 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLDT 107 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhhH
Confidence 3478999999999999888887 6799999999999999999843 35799999999988873 389999853322
Q ss_pred cc--CCHHHHHHHHHhccCCCCEEEEE
Q 022929 187 YW--PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~--~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.+ .....+++.+...|+.++.++-.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccccH
Confidence 11 22236888888899999888643
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=7.7e-05 Score=59.63 Aligned_cols=103 Identities=20% Similarity=0.102 Sum_probs=69.8
Q ss_pred cCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCCCC--------CCCCC
Q 022929 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL--------PFPTD 174 (290)
Q Consensus 105 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~~l--------~~~~~ 174 (290)
..+.+++.+|||+||-+|.++....++. |...|.|||+-. -.+..++.++++ |+.+. .+++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 4455689999999999999999988886 889999999821 122345666665 66542 15667
Q ss_pred CccEEEecCccccc----CCHH-------HHHHHHHhccCCCCEEEEEccCC
Q 022929 175 YADRYVSAGSIEYW----PDPQ-------RGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 175 ~~D~i~~~~~l~~~----~~~~-------~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.|+|++.+.-... .|-. ..+.-....++|+|.++.-....
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 89999985443211 1111 24444456778999998865443
No 245
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.82 E-value=1.8e-05 Score=62.77 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=50.3
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCCC--CCCCC-ccEEEe
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDY-ADRYVS 181 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l~--~~~~~-~D~i~~ 181 (290)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.|+. ..+++++++|..++. +.... +|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36999999999999999999 5689999999999999998832 457999999996542 22122 799997
No 246
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.79 E-value=5.9e-05 Score=67.93 Aligned_cols=71 Identities=32% Similarity=0.454 Sum_probs=51.5
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~ 168 (290)
.+.+...+++.+... ++ .|||+-||.|.++..+++. ..+|+|+|+++++++.|++++.. .|++|+.+++++
T Consensus 182 ~~~l~~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 182 NEKLYEQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 345555666666543 33 8999999999999999998 57999999999999999988543 468898877643
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.66 E-value=0.00028 Score=60.81 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCC-----CCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~-----~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
+.+|+=||||+ -..++.+++. .++..++++|+++++.+.+++... ..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997 4445555554 346789999999999999987533 3578999999877654435699998765
Q ss_pred ccc-ccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 184 SIE-YWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 184 ~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
... .-.+..++++++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 443 3346678999999999999999875
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.64 E-value=0.00015 Score=63.23 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCC--CCCCCCccEEEe-
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL--PFPTDYADRYVS- 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l--~~~~~~~D~i~~- 181 (290)
.++.+|||++++.|.-+..+++..+ ...+++.|+++.-+...+++ ....++.....|.... ......||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4789999999999999999999876 58999999999988887765 4445666676676543 122335999987
Q ss_pred -----cCcccccCCH----------------HHHHHHHHhcc----CCCCEEEEEccC
Q 022929 182 -----AGSIEYWPDP----------------QRGIREAYRVL----KLGGKACIIGPV 214 (290)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~L----~pgG~l~i~~~~ 214 (290)
..++..-++. .++|+.+.+.+ ||||.++.+++.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 1222222321 26899999999 999999998764
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.63 E-value=0.00021 Score=62.54 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=65.4
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC----
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP---- 170 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~---- 170 (290)
+.+.+++.+.. .++..++|.-+|.|..+..+++..+..+++|+|.++.+++.++++... .++++++++..++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 34455555544 377899999999999999999987678999999999999999887542 46888998886542
Q ss_pred -CCCCCccEEEe
Q 022929 171 -FPTDYADRYVS 181 (290)
Q Consensus 171 -~~~~~~D~i~~ 181 (290)
....++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 22346888887
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.60 E-value=0.00012 Score=56.98 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=45.9
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---CCceEEEcCCCC
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~v~~~~~d~~~ 168 (290)
+++|||||.|.++..+++..+..+++++|+++.+.+.++++... .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999987778999999999999999877432 346777666543
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.57 E-value=0.0017 Score=53.56 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=89.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+.++.||||..+.+...+.+..+...+++.|+++..++.|.+++.. .+++...+|....=-.++.+|+|+...+-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 56669999999999999999998889999999999999999877553 34667777774422234469999876654
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.. -...++++-.+.|+.=-.+++. |.. ...+++++|...+|++....-+.+
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQ-Pn~-----------------~~~~LR~~L~~~~~~I~~E~ileE 146 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQ-PNI-----------------HTYELREWLSANSYEIKAETILEE 146 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEEC-CCC-----------------CHHHHHHHHHhCCceeeeeeeecc
Confidence 31 1235666666666533344443 322 456888999999998776555443
No 252
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.57 E-value=0.0014 Score=59.33 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCEEEEEcCccchhHHHHHh--------h-------CCCCeEEEEeCCHH-HHHHHh------hhC---------CCCCc
Q 022929 111 NMLVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPH-QLAKAK------QKE---------PLKEC 159 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~-~~~~a~------~~~---------~~~~v 159 (290)
..+|+|+|||+|..+..+.. + .|..++..-|+-.. .-...+ +.. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654421 1 23467777777421 111111 000 00011
Q ss_pred eEE---EcCCCCCCCCCCCccEEEecCcccccCCH--------------------------------------HHHHHHH
Q 022929 160 KIV---EGDAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIREA 198 (290)
Q Consensus 160 ~~~---~~d~~~l~~~~~~~D~i~~~~~l~~~~~~--------------------------------------~~~l~~~ 198 (290)
-|+ .+++..--||.++.+++++.+++||++.. ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 23333334888999999999999998631 0244444
Q ss_pred HhccCCCCEEEEEccCCCc-----------hh---HhhhhHHHh----------------hcCCCHHHHHHHHHHCC-Cc
Q 022929 199 YRVLKLGGKACIIGPVYPT-----------FW---LSRYFADVW----------------MLFPKEEEYIEWFQKAG-FK 247 (290)
Q Consensus 199 ~~~L~pgG~l~i~~~~~~~-----------~~---~~~~~~~~~----------------~~~~~~~~~~~ll~~aG-f~ 247 (290)
.+-|.|||.+++.....+. .+ ....+.++. ..+++.+|+++.+++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 5778899999997544321 00 111111111 12468999999999888 67
Q ss_pred EEEEEEcCc
Q 022929 248 DVQLKRIGP 256 (290)
Q Consensus 248 ~v~~~~~~~ 256 (290)
+.+++.+..
T Consensus 304 I~~le~~~~ 312 (386)
T PLN02668 304 IDKLEVFKG 312 (386)
T ss_pred eeeeEEeec
Confidence 766666543
No 253
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.53 E-value=0.00042 Score=58.40 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=86.6
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCCC
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPF 171 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~~ 171 (290)
.+.+-..++..++ +..+|+|||||---++..+....++..|+|+|++..+++....... ..+.+....|+..-+
T Consensus 92 Ld~fY~~if~~~~---~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 92 LDEFYDEIFGRIP---PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp HHHHHHHHCCCS------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred HHHHHHHHHhcCC---CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 4444445555443 5799999999999999888888778999999999999988876532 235567777886643
Q ss_pred CCCCccEEEecCcccccCCHHH-HHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQR-GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~-~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+....|+.+..-+++.+...+. .--++.+.+. .-.++++.+...-..-..-+...+ ...+.+++.+.|+. ++
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y-----~~~fe~~~~~~~~~-~~ 240 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTY-----SAWFEALAAERGWI-VD 240 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCH-----HHHHHHHCCTTCEE-EE
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCH-----HHHHHHhcccCCce-ee
Confidence 3455999998877776643321 1122222232 234555555443222222222211 36778888888887 44
Q ss_pred EEEcC
Q 022929 251 LKRIG 255 (290)
Q Consensus 251 ~~~~~ 255 (290)
...++
T Consensus 241 ~~~~~ 245 (251)
T PF07091_consen 241 RLTFG 245 (251)
T ss_dssp EEEET
T ss_pred eeecc
Confidence 44443
No 254
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00012 Score=67.18 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=49.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAED 168 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~ 168 (290)
.+..++|+.||+|.+++.+++. ..+|+|++++++++..|++++..+ |.+|+++-.++
T Consensus 383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6789999999999999999998 689999999999999999987654 57899985544
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.48 E-value=1.6e-05 Score=58.71 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=41.2
Q ss_pred EEEcCccchhHHHHHhhCCC---CeEEEEeCCH---HHHHHHhhhCCCCCceEEEcCCCCC--CCCCCCccEEEecCccc
Q 022929 115 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSP---HQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 115 LDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~---~~~~~a~~~~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~ 186 (290)
||||+..|..+..+++..+. .+++++|..+ ...+..++.....+++++.++..+. .+..+++|+++.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999988888776543 3799999998 4444444322235689999988432 133457999997543 2
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
..+.....++.+.+.|+|||.+++-
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2233446788899999999998774
No 256
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.45 E-value=0.00039 Score=54.17 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCccchhHHHHHh-----hCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCCCCCCCCCcc
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~-----~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~l~~~~~~~D 177 (290)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++.. ..+..+...+..+... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3678999999999999999998 5 57999999999998888876532 1345555555543222 33467
Q ss_pred EEEecCcccccCCH-HHHHHHHHhccCCCCEEE
Q 022929 178 RYVSAGSIEYWPDP-QRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 178 ~i~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~ 209 (290)
+++.-+. -.+. ..+++.+.+ ++-..+
T Consensus 102 ~~vgLHa---CG~Ls~~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHA---CGDLSDRALRLFIR---PNARFL 128 (141)
T ss_pred EEEEeec---ccchHHHHHHHHHH---cCCCEE
Confidence 7775333 2332 245555444 444443
No 257
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.0014 Score=56.56 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=62.8
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCC---
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--- 170 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~--- 170 (290)
+...++..+... ++...+|.--|.|..+..+++.++. .+++|+|-++.+++.|++.... .++.+++.++.++.
T Consensus 11 Ll~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 444555555543 7799999999999999999999875 5699999999999999987542 46788887775442
Q ss_pred --CCCCCccEEEe
Q 022929 171 --FPTDYADRYVS 181 (290)
Q Consensus 171 --~~~~~~D~i~~ 181 (290)
...+++|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 22345666665
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.39 E-value=0.00075 Score=55.50 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCCEEEEEcCccchhHHHHHh---hC-CCCeEEEEeCCHHHHHHH-hh-hCCCCCceEEEcCCCCCC----C--CCCCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVK---HV-DAKNVTILDQSPHQLAKA-KQ-KEPLKECKIVEGDAEDLP----F--PTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~---~~-~~~~v~~vD~s~~~~~~a-~~-~~~~~~v~~~~~d~~~l~----~--~~~~~D 177 (290)
+++.|+|+|.-.|.-+..++. .. +..+|+|+|++-...... .+ .--..+++++++|..+.. . .....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 678999999999887776654 33 568999999954333222 22 112368999999986642 1 111122
Q ss_pred -EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhc-CCCHHHHHHHHHHCC-Cc
Q 022929 178 -RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML-FPKEEEYIEWFQKAG-FK 247 (290)
Q Consensus 178 -~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~aG-f~ 247 (290)
++++-.+-|...+..+.|+....++++|+++++.+...........-...|.. --....+.+.|++.. |+
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcE
Confidence 34445555555677788889999999999999987654332222111111111 113567778888765 53
No 259
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.34 E-value=0.00035 Score=57.41 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCCCCC----CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL----PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~~~l----~~~~~~~D~i~~ 181 (290)
....|+|.-||-|..++.++.. +..|+++|+++.-+..|+.|+. .++++|+++|+.++ .+....+|+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4578999999999999998888 5689999999999999999854 35799999999653 344444666665
Q ss_pred cCcccccCCHHHHHHHHHhccCCCC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGG 206 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG 206 (290)
.--...-.-...-+..+...++|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 3322211111233444555555554
No 260
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.21 E-value=0.01 Score=53.17 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----------------CCCeEEEEeCCH-HHHHHHhhh-------CCCCCc--eEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSP-HQLAKAKQK-------EPLKEC--KIVE 163 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----------------~~~~v~~vD~s~-~~~~~a~~~-------~~~~~v--~~~~ 163 (290)
..-+|+|+||.+|..+..+.... |..+|+.-|+-. +.-...+.. ....++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 55799999999999887664321 235788888732 111111110 001222 2244
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCH---------------------------------------HHHHHHHHhccCC
Q 022929 164 GDAEDLPFPTDYADRYVSAGSIEYWPDP---------------------------------------QRGIREAYRVLKL 204 (290)
Q Consensus 164 ~d~~~l~~~~~~~D~i~~~~~l~~~~~~---------------------------------------~~~l~~~~~~L~p 204 (290)
+.+..--+|+++.|++++.+++||++.. ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 5665545888999999999999998530 0345555577889
Q ss_pred CCEEEEEccCCCch--------h----HhhhhHHHh----------------hcCCCHHHHHHHHHHCC-CcEEEEEEcC
Q 022929 205 GGKACIIGPVYPTF--------W----LSRYFADVW----------------MLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (290)
Q Consensus 205 gG~l~i~~~~~~~~--------~----~~~~~~~~~----------------~~~~~~~~~~~ll~~aG-f~~v~~~~~~ 255 (290)
||.+++.....+.. . +...+.++. ..+++.+|+.+.+++.| |++.+.+.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 99999875443321 1 111111111 13468999999998877 6666666554
No 261
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.12 E-value=0.00048 Score=60.02 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCEEEEEcCccchh-HHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCC----CC-CCCCCCCccEE
Q 022929 111 NMLVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDA----ED-LPFPTDYADRY 179 (290)
Q Consensus 111 ~~~vLDiG~G~G~~-~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~----~~-l~~~~~~~D~i 179 (290)
..++||||||...+ .+..++.+ +++++|+|+++..++.|+++... .+|+++...- .. +...++.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998654 33334444 89999999999999999987443 3576654422 11 22234579999
Q ss_pred EecCcccc
Q 022929 180 VSAGSIEY 187 (290)
Q Consensus 180 ~~~~~l~~ 187 (290)
+|+--++.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99765553
No 262
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0011 Score=58.19 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhh---hCCCCCceEEEcCC----CCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDA----EDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~---~~~~~~v~~~~~d~----~~l~~~~~~~D~i~~ 181 (290)
+.++|||+|.|.|.-+..+-..+|. ..++.++.|+..-+.... +...........|+ .++|.. +.|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhh
Confidence 5678999999999988888777776 457778888866555443 32222222333333 333432 23666665
Q ss_pred cCcccccCCH---HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 182 AGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 182 ~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
.+-+-+..+. ...++.+..++.|||.+++++...+.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 4444333322 34888999999999999999887654
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.04 E-value=0.0014 Score=50.47 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred eEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCC--CCCCCccEEEecCcccccCC--------HH---HHHHHH
Q 022929 136 NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPD--------PQ---RGIREA 198 (290)
Q Consensus 136 ~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~--~~~~~~D~i~~~~~l~~~~~--------~~---~~l~~~ 198 (290)
+|+|+|+.+++++..+++... .+++++..+-+.+. .+++++|+++.+. -++|. ++ ..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999987432 36888887776553 3334699988653 34443 22 588899
Q ss_pred HhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 199 YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 199 ~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
.++|+|||.+.+...........+.- ...+|.+-|....|.+....-++.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~--------av~~~~~~L~~~~~~V~~~~~~N~ 128 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE--------AVEEFLASLDQKEFNVLKYQFINQ 128 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH--------HHHHHHHTS-TTTEEEEEEEESS-
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH--------HHHHHHHhCCcceEEEEEEEccCC
Confidence 99999999998875442221111110 134455555556788887777654
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=97.02 E-value=0.00033 Score=51.28 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=44.6
Q ss_pred CccEEEecCccccc--CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHh-----hhhHHHhhcCCCHHHHHHHHHH
Q 022929 175 YADRYVSAGSIEYW--PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-----RYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 175 ~~D~i~~~~~l~~~--~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+||+|+|..+..|+ .. ...+++.+.+.|+|||.+++.-..+..+... ....+....-..++.+.++|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999999887755 21 3479999999999999999985543322211 1111111222356678888887
Q ss_pred --CCCcEEEEEEcCccccccc
Q 022929 244 --AGFKDVQLKRIGPKWYRGV 262 (290)
Q Consensus 244 --aGf~~v~~~~~~~~~~~~~ 262 (290)
.||...+......+-..++
T Consensus 81 ~evGF~~~e~~~~~~~~~~gF 101 (110)
T PF06859_consen 81 PEVGFSSVEELGVPENSSKGF 101 (110)
T ss_dssp TTT---EEEEE----------
T ss_pred cccceEEEEEcccCCCCCCCC
Confidence 5999887655544333333
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.0081 Score=53.36 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-CCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-AEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++++|+=+|+| .|.++..+++.. +.+|+++|.|++-.+.|++.... .++... .....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd---~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD---HVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc---EEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 378999999888 467888899976 59999999999999999977431 233322 1111111123999986543
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...++...+.|+++|.+++....
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 34678899999999999998765
No 266
>PRK10742 putative methyltransferase; Provisional
Probab=96.98 E-value=0.0022 Score=54.29 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=55.8
Q ss_pred CCC--EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------CCceEEEcCCCCC-CCCCC
Q 022929 110 RNM--LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVEGDAEDL-PFPTD 174 (290)
Q Consensus 110 ~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~v~~~~~d~~~l-~~~~~ 174 (290)
++. +|||.-+|+|..+..++.. +++|+++|-++.+....+++... .+++++.+|..+. .-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 444 9999999999999999998 77899999999877776654221 3577777777432 21223
Q ss_pred CccEEEecCcccc
Q 022929 175 YADRYVSAGSIEY 187 (290)
Q Consensus 175 ~~D~i~~~~~l~~ 187 (290)
+||+|+..-.+.+
T Consensus 164 ~fDVVYlDPMfp~ 176 (250)
T PRK10742 164 RPQVVYLDPMFPH 176 (250)
T ss_pred CCcEEEECCCCCC
Confidence 6999998665554
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.91 E-value=0.022 Score=47.96 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCC---CCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFP---TDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~---~~~~D~i~~~~~ 184 (290)
.+++||-+|=+. ..++.++...+..+|+.+|+++..++..++.+.. -+++.+..|+.. |++ .++||++++.-.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCC
Confidence 689999999554 4444555444578999999999999888755432 238888999965 333 357999997421
Q ss_pred ccccCCHHHHHHHHHhccCCCC-EEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
- ......-++.+....||..| ..++.-...+.. . . ...++++.+.+.||.+.++..
T Consensus 122 y-T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-~-----~------~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 Y-TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-P-----D------KWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp S-SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---H-----H------HHHHHHHHHHTS--EEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-H-----H------HHHHHHHHHHHCCcCHHHHHh
Confidence 1 11223468889999998766 444432222110 0 0 123677888899997776643
No 268
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.88 E-value=0.0023 Score=56.11 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred HhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--CCCceEEEcCCCCCC-----C
Q 022929 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-----F 171 (290)
Q Consensus 99 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~v~~~~~d~~~l~-----~ 171 (290)
..+++.+.. .++..++|.--|.|..+..+++.+++.+++|+|.++++++.++++.. ..++.++..++.++. .
T Consensus 10 ~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 344444443 37889999999999999999999888999999999999999998865 457889999886653 2
Q ss_pred -CCCCccEEEe
Q 022929 172 -PTDYADRYVS 181 (290)
Q Consensus 172 -~~~~~D~i~~ 181 (290)
...++|.|+.
T Consensus 89 ~~~~~~dgiL~ 99 (310)
T PF01795_consen 89 NGINKVDGILF 99 (310)
T ss_dssp TTTS-EEEEEE
T ss_pred cCCCccCEEEE
Confidence 3346888887
No 269
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.84 E-value=0.005 Score=55.47 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCC---CCCceEEEcCCCCCC---CCCCCccEEE
Q 022929 108 SNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYV 180 (290)
Q Consensus 108 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~d~~~l~---~~~~~~D~i~ 180 (290)
++++.+|||..+-.|.-+.+++....+ ..|++.|.+..-+...+.+.. -.+......|..++| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 458999999999999888887776543 789999999988888877643 345666777776655 444 799998
Q ss_pred e----cC--ccc------ccCC----------HHHHHHHHHhccCCCCEEEEEccCC
Q 022929 181 S----AG--SIE------YWPD----------PQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~----~~--~l~------~~~~----------~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. +. ++. .... .+++|..+..++++||+|+.+++..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 5 22 211 1111 1268888999999999999987654
No 270
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.83 E-value=0.0042 Score=52.66 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=69.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---------CceEEEcCCCC---CCCCCCC-c
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIVEGDAED---LPFPTDY-A 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~v~~~~~d~~~---l~~~~~~-~ 176 (290)
...+|||+|+|+|..++.++... ..+|+..|+. ..+...+.+...+ .+.....+-.. ..+-... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998777777753 7899999984 4333333321111 12222222211 1122223 8
Q ss_pred cEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
|+|++..++.....++.+...+...|..++.+++..+...
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999888889999999999999997777655443
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.015 Score=50.81 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CCC------CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL------PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~l------~~~~~~~D~i 179 (290)
+++.+||-+|+|+ |..+...++..+..+|+.+|+++.-++.|++ +....+....... .++ -+....+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3789999999997 8888899999988999999999999999998 4322222211111 110 1233458888
Q ss_pred EecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
+....++ ..++.....++.||.+++......
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 8665543 567788899999999888765443
No 272
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.63 E-value=0.033 Score=52.51 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-----------CC------
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----------LP------ 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-----------l~------ 170 (290)
.++++|+=+|||. |..+...++.. +..|+++|.+++.++.+++.. .++...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC----CeEEEeccccccccccchhhhcchhHHHH
Confidence 3789999999996 88888888887 568999999999999998742 2332222111 00
Q ss_pred ----CCC--CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 171 ----FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 171 ----~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+.+ +.+|+|+.......-+.+..+.++..+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999776554434454556999999999999887654
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.53 E-value=0.004 Score=57.43 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcCC-CCCCCCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d~-~~l~~~~~~~D~i~~~~~l 185 (290)
--.|+|..+|.|.++..|.+. | |+.....+ ..+...-++ +.-=...|. +.++.-...||+|.+..++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhc----ccchhccchhhccCCCCcchhheehhhhh
Confidence 357999999999999999776 2 33333322 233333322 111123344 4455445679999999888
Q ss_pred cccCCH---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 022929 186 EYWPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (290)
Q Consensus 186 ~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 253 (290)
....+. ..++-++-|+|+|+|.+++-+... ...+++.++....++..-...
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEEEEec
Confidence 877553 579999999999999999876422 256788888888887554443
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.47 E-value=0.16 Score=44.23 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=77.6
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC--CCCccEEEecCcccc---
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP--TDYADRYVSAGSIEY--- 187 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~--~~~~D~i~~~~~l~~--- 187 (290)
+++|+-||.|.+...+.+. +...++++|+++.+++..+.|... ..+..|+.++... ...+|+++...--..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---CCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 6899999999998888776 234578899999999999988642 2567777665422 245999987432111
Q ss_pred ------cCCHH-HHHHHHH---hccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 ------WPDPQ-RGIREAY---RVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 ------~~~~~-~~l~~~~---~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+.. .++.++. +.++|. +++.+....-.... .-.....+.+.|++.||.+ ....+..
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~-~~~~l~a 145 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNV-YWKLLNA 145 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEE-EEEEEEH
Confidence 12222 2333333 333444 44444433221100 0013567888999999974 4444443
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.39 E-value=0.024 Score=51.12 Aligned_cols=101 Identities=25% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-C-CCC-CCC-CCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDL-PFP-TDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-~-~~l-~~~-~~~~D~i~~~~~ 184 (290)
++.+|+=+|||+ |.++..+++..+..+|+.+|.+++-++.|++......+.....+ . ... ... ...+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445999999997 88989999998889999999999999999985432211111111 0 000 111 225999986544
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
....++.+.++++|+|.+.+......
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 23478899999999999998765543
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.38 E-value=0.021 Score=51.24 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++++||=+|||. |..+..+++..+..+++++|.+++.++.+++... .. +.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa-~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA-DKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC-cEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 678999999884 7788888888644479999999999999886432 11 11011112111111234898875422
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467788899999999998764
No 277
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.35 E-value=0.099 Score=41.85 Aligned_cols=131 Identities=19% Similarity=0.097 Sum_probs=83.5
Q ss_pred EcCccchhHHHHHhhCC-CCeEEEEeCC--HHHHHHHh---hh---CCCCCceE-EEcCCCCCC----CCCCCccEEEec
Q 022929 117 VGGGTGFTTLGIVKHVD-AKNVTILDQS--PHQLAKAK---QK---EPLKECKI-VEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 117 iG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~~a~---~~---~~~~~v~~-~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
||=|.=.++..|++..+ ...+++.-++ ++..+.-. ++ +...++.+ ...|+.++. .....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56677778888888876 5667665443 33332222 11 12233333 344665553 355789999976
Q ss_pred Ccccc--cCC-----------HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 183 GSIEY--WPD-----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 183 ~~l~~--~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
+-..- ..+ ...+++.+..+|+++|.+.+.-..... ++...+.++.+++||.++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEEE
Confidence 43322 001 126888999999999999887544332 245677899999999999
Q ss_pred EEEEcCcccccc
Q 022929 250 QLKRIGPKWYRG 261 (290)
Q Consensus 250 ~~~~~~~~~~~~ 261 (290)
+...+....|++
T Consensus 149 ~~~~F~~~~ypg 160 (166)
T PF10354_consen 149 RKVPFDPSDYPG 160 (166)
T ss_pred EEecCCHHHCCC
Confidence 998887766643
No 278
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.31 E-value=0.083 Score=45.55 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=86.1
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC------CCCceEEEcCCCC-C-------CCCCCCcc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAED-L-------PFPTDYAD 177 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~v~~~~~d~~~-l-------~~~~~~~D 177 (290)
..|+.+|||--.-...+... ++..++=+|. +++++.-++... ..+..++..|+.+ + .+..+..-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999975555444222 2456666776 555554443332 3467788888852 1 12223355
Q ss_pred EEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCC-CchhH----hhh---h----HHHhhcCCCHHHHHHHHHH
Q 022929 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVY-PTFWL----SRY---F----ADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~-~~~~~----~~~---~----~~~~~~~~~~~~~~~ll~~ 243 (290)
++++-.++.|++.. .++++.+.+...||+.+++..... ..... ... . ...+...++.+++.++|++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE 240 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence 88889999999765 479999999888999988764332 11000 000 0 0111223578999999999
Q ss_pred CCCcEEEE
Q 022929 244 AGFKDVQL 251 (290)
Q Consensus 244 aGf~~v~~ 251 (290)
.||++.+.
T Consensus 241 ~Gw~~~~~ 248 (260)
T TIGR00027 241 RGWRASEH 248 (260)
T ss_pred CCCeeecC
Confidence 99987765
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=96.24 E-value=0.013 Score=51.35 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
|.+....+.+.++.... .+++.|||.-||+|..+....+. +.+++|+|++++..+.|+++..
T Consensus 190 Pt~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 190 PTQKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cccChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 34455677777776654 48999999999999999888887 8899999999999999998853
No 280
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.17 E-value=0.012 Score=49.10 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
+......+.+.++.... .+++.|||.-||+|..+..+.+. +.+++|+|++++..+.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 44555677777776654 47999999999999999998888 7899999999999998874
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.14 E-value=0.034 Score=50.79 Aligned_cols=102 Identities=24% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-----C-C-CCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----L-P-FPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-----l-~-~~~~~~D~i~ 180 (290)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++... ..++...-.+ + . .....+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3788999999998 8899999998744469999999999999887532 1222211110 0 1 1223599988
Q ss_pred ecCc---------------ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGS---------------IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~---------------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-. ++...+....++++.+.++++|.+++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 6431 11223445688999999999999988754
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.10 E-value=0.048 Score=53.54 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhC-------C-----CCeEEEEeCC---HHHHHHHhhhC--------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQS---PHQLAKAKQKE-------------------- 154 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~-------~-----~~~v~~vD~s---~~~~~~a~~~~-------------------- 154 (290)
+.-+|+|+|=|+|.......+.+ + ..+++.+|.. .+.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45789999999998666555433 2 3588999953 33333332110
Q ss_pred ------CCC--CceEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHh
Q 022929 155 ------PLK--ECKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (290)
Q Consensus 155 ------~~~--~v~~~~~d~~~-l~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 221 (290)
... .+++..+|+.+ ++-....+|+++.... .--.+| +.+++.+.++++|||.+.--+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 011 23456677643 2212245999986432 222233 479999999999999986422
Q ss_pred hhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCcc
Q 022929 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 257 (290)
+...++.-|.++||++.+..-.+.+
T Consensus 207 -----------~a~~vr~~l~~~GF~v~~~~~~g~k 231 (662)
T PRK01747 207 -----------SAGFVRRGLQEAGFTVRKVKGFGRK 231 (662)
T ss_pred -----------hHHHHHHHHHHcCCeeeecCCCchh
Confidence 4567889999999988776655543
No 283
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.09 E-value=0.029 Score=46.95 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=74.8
Q ss_pred cHHHHHhhcc---ccCCCCCCCEEEEEcCccchhHHHHHhhC-CCCeEEEEeCCH----HHHHHHhhhCCCCCceEEEcC
Q 022929 94 TEDMRDDALE---PADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (290)
Q Consensus 94 ~~~~~~~~l~---~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~----~~~~~a~~~~~~~~v~~~~~d 165 (290)
...++..++- .+.. +++.+||-+|+++|....++.... |...|++++.|. +.+..|+++ .|+--+..|
T Consensus 138 rSKLAA~I~gGvdnihi-kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHI-KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceee-cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc
Confidence 4445555543 3333 589999999999999988888775 457899999986 566666653 466677778
Q ss_pred CCCCC---CCCCCccEEEecCcccccCCHH---HHHHHHHhccCCCCEEEEEc
Q 022929 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 166 ~~~l~---~~~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~ 212 (290)
+.... +.-.-.|+|++. ++.++ -+.-++...||+||.+++.-
T Consensus 214 ArhP~KYRmlVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCCchheeeeeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 75521 112236777653 22332 35568889999999998863
No 284
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.069 Score=41.34 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=77.1
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC----CCCCceEEEcCCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAE 167 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~v~~~~~d~~ 167 (290)
+-+.+..+.+++.+.. ++..+.+|+|+|.|.+....++.. -...+|+++++-.+..++-+. -...+.|..-|+-
T Consensus 55 pAtteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred CccHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 3455566667776654 366789999999999988888872 478899999998777766431 1245678888887
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 168 ~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+..+.+-++-+|+ .+-.-+++ +-.++..-+..|..++-.-+..+.
T Consensus 133 K~dl~dy~~vviF--gaes~m~d---Le~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 133 KVDLRDYRNVVIF--GAESVMPD---LEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hccccccceEEEe--ehHHHHhh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence 7666553333333 33222233 334555566777777666544444
No 285
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.98 E-value=0.027 Score=48.65 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC-------CCCCceEEEcCCCCC--CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL--PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~v~~~~~d~~~l--~~~~~~~D~i~ 180 (290)
..+++|-||.|.|.......++-.-..+..+|+++..++..++.. ..+++.+..+|-..+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 678999999999999999888844578999999999998888753 235688888887433 24467799998
Q ss_pred ecCcccccCC----HHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....=--.+. .+.++..+.+.||++|+++....
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 6432111111 13578888999999999988763
No 286
>PHA01634 hypothetical protein
Probab=95.90 E-value=0.05 Score=41.03 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~ 181 (290)
.+++|+|||++-|.-++.++-+ +...|++++.++...+..+++....++-=......+.+-.-+.||+.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999988877 3678999999999999998875433211001111123323345887765
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.018 Score=47.78 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----C--C---CeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--------CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----D--A---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~--~---~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--------~~ 172 (290)
.-.+++|+.+-.|.++..+.+++ + + ..+++||+.+ | +.-.++.-+++|+.... |.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------aPI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------APIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------CccCceEEeecccCCHhHHHHHHHHhC
Confidence 34789999999999998887653 1 1 2399999832 2 23456778889987643 66
Q ss_pred CCCccEEEecCc-----ccccCCHH------HHHHHHHhccCCCCEEEEE
Q 022929 173 TDYADRYVSAGS-----IEYWPDPQ------RGIREAYRVLKLGGKACII 211 (290)
Q Consensus 173 ~~~~D~i~~~~~-----l~~~~~~~------~~l~~~~~~L~pgG~l~i~ 211 (290)
..+.|+|+|... +|.+..+- ..|+-...+|+|||.++--
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 678999999543 44443331 4556667899999998754
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.69 E-value=0.029 Score=47.20 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=44.0
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-------hCCC-----CCceEEEcCCCC-CCCCCCCccE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEPL-----KECKIVEGDAED-LPFPTDYADR 178 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-------~~~~-----~~v~~~~~d~~~-l~~~~~~~D~ 178 (290)
.+|||.-+|-|..+..++.. |.+|+++|-|+-+....++ .... .+++++.+|..+ +..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 49999999999999999876 7899999999865444332 1111 358899999865 4455678999
Q ss_pred EEecCcccc
Q 022929 179 YVSAGSIEY 187 (290)
Q Consensus 179 i~~~~~l~~ 187 (290)
|+..-++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998766654
No 289
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.66 E-value=0.027 Score=46.45 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=62.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC--CeEEEEeCCHHHHHHHhhhCCC-------------------------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL------------------------------- 156 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------------------------- 156 (290)
.+.++.|-.||+|.++..+.-.++. ..+++.|+++++++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 5679999999999988777655433 6899999999999999987311
Q ss_pred --------------CCceEEEcCCCCCC-----CCCCCccEEEec----CcccccCC-----HHHHHHHHHhccCCCCEE
Q 022929 157 --------------KECKIVEGDAEDLP-----FPTDYADRYVSA----GSIEYWPD-----PQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 157 --------------~~v~~~~~d~~~l~-----~~~~~~D~i~~~----~~l~~~~~-----~~~~l~~~~~~L~pgG~l 208 (290)
......+.|+++.. ......|+|+.. ...+|..+ ...+++.+..+|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11346777877621 112236888873 22333321 137999999999656666
Q ss_pred EEEc
Q 022929 209 CIIG 212 (290)
Q Consensus 209 ~i~~ 212 (290)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6643
No 290
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.62 E-value=0.031 Score=47.96 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCC--------CCeEEEEeCCHHHHHHHhhhCCC---------CCceEEEcCCCCCCCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAEDLPFPT 173 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~---------~~v~~~~~d~~~l~~~~ 173 (290)
..+|+|+|+|+|.++..+++... ..+|+.+|+|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999988876543 35899999999988888877653 12333 33444433
Q ss_pred CCccEEEecCcccccC
Q 022929 174 DYADRYVSAGSIEYWP 189 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~ 189 (290)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 245667777666665
No 291
>PRK13699 putative methylase; Provisional
Probab=95.48 E-value=0.047 Score=46.06 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCcccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC
Q 022929 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (290)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 154 (290)
|.+....+.+.++.... .+++.|||.-||+|..+....+. +.+++|+|++++..+.+.++.
T Consensus 145 p~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 145 PTEKPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence 44555667777665443 37899999999999999888877 789999999999999998764
No 292
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.44 E-value=0.046 Score=50.79 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=79.4
Q ss_pred cHHHHHhhccccCCCCC--CCEEEEEcCccchhHHHHHhh----CCCCeEEEEeCCHHHHHHHhhhCC---CCCceEEEc
Q 022929 94 TEDMRDDALEPADLSNR--NMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEG 164 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~~~~~ 164 (290)
.+.+...+++......+ ...|+-+|+|-|-+.....+. ....++++++-+|.++...+..-- ..+++++..
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 34444455555443322 456788899999876554432 124789999999998877765311 356999999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEE
Q 022929 165 DAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 165 d~~~l~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i 210 (290)
|+.+++-+..+.|++++-..-..-.+. .+.|..+.+.|||+|.-+=
T Consensus 429 DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 429 DMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 999988555789999975433322222 3688999999999987654
No 293
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.048 Score=48.57 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCCCC-CCCCCccEEEecCccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~ 186 (290)
..+|+|-=+|+|.=++..+...+..+++.-|+|+++.+.+++|...+ +...+..|...+- -....||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 68899999999999999999877679999999999999999997655 4555556654321 1124588774 33
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....|-.++..+.+.++.||.|.+.-.
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 444566789999999999999998643
No 294
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.29 E-value=0.88 Score=43.03 Aligned_cols=138 Identities=16% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhCCCCCc----eEEEcCCCCCC-C----CCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLP-F----PTDY 175 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~v----~~~~~d~~~l~-~----~~~~ 175 (290)
.+..+|.|..||+|.+.....+.+. ...++|.|+++.....|+-+.-..++ ....+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3667999999999998887776653 26799999999999999987543333 33444443223 2 3356
Q ss_pred ccEEEecCccc---ccC---------------------CH-HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhc
Q 022929 176 ADRYVSAGSIE---YWP---------------------DP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML 230 (290)
Q Consensus 176 ~D~i~~~~~l~---~~~---------------------~~-~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 230 (290)
||.|+++--.. +.. .. ...++.+...|+|||+..++-+..-.+.-.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~--------- 335 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG--------- 335 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC---------
Confidence 99988842211 110 01 368899999999998766654433211000
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 231 FPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 231 ~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
....++..+-+ ...+..+..++...
T Consensus 336 --~e~~IR~~l~~-~~~~~~ii~lp~~l 360 (489)
T COG0286 336 --AEKDIRKDLLE-DNLLEAIIGLPTGL 360 (489)
T ss_pred --chHHHHHHHHh-ccceEEeeeCChhh
Confidence 23455555555 43344555555543
No 295
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.28 E-value=0.02 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-h------CC---CCC---ceEEEcCCCCCC--CCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-K------EP---LKE---CKIVEGDAEDLP--FPT 173 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~------~~---~~~---v~~~~~d~~~l~--~~~ 173 (290)
..+++|||+|||+|...+...... ...+...|.|.+.++.-.- + .. ... ......++.+.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 478999999999999988887772 3788899998887732221 0 00 000 111222111111 111
Q ss_pred -CCccEEEecCcccccCCHHHH-HHHHHhccCCCCEEEEE
Q 022929 174 -DYADRYVSAGSIEYWPDPQRG-IREAYRVLKLGGKACII 211 (290)
Q Consensus 174 -~~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i~ 211 (290)
-+||+|.++..+...+..+.+ ......+++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 269999988888777666655 66667778889988775
No 296
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.7 Score=41.39 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhh---hCCCCCceEEEcCCCCCC---------CC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLP---------FP 172 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~---~~~~~~v~~~~~d~~~l~---------~~ 172 (290)
+++.+|||..+-.|.-+..+.+..- ...+++-|.+..-+..... +....+......|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 4899999999999998877766631 2378999998865555443 333333333444443222 12
Q ss_pred CCCccEEEec------CcccccCC----------------H-HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 173 TDYADRYVSA------GSIEYWPD----------------P-QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 173 ~~~~D~i~~~------~~l~~~~~----------------~-~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
...||-|++. ..+.+.++ . -.++.+..++||+||.++.+++...+
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 2358988871 11111111 1 15888999999999999999876654
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.18 E-value=0.017 Score=42.20 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 142 (290)
+....+|||||+|.+.--|... +..-+|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999998777776 778889997
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.01 E-value=0.14 Score=48.36 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC--------------------
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------------------- 168 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-------------------- 168 (290)
++.+|+=+|+|. |..+..+++.. +..|+++|.+++.++.+++. +.+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccccceeecCHHHHHHH
Confidence 678999999996 67777777776 57899999999988888863 22333323211
Q ss_pred ---CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 169 ---LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 169 ---l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
++-.-..+|+|+..-.+..-+.|.-+.++..+.+|||+.++=
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 010024599998776555555555678889999999998764
No 299
>PRK13699 putative methylase; Provisional
Probab=94.79 E-value=0.2 Score=42.30 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred eEEEcCCCCC--CCCCCCccEEEec--Ccc--cc-----c--CC----HHHHHHHHHhccCCCCEEEEEccCCCchhHhh
Q 022929 160 KIVEGDAEDL--PFPTDYADRYVSA--GSI--EY-----W--PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (290)
Q Consensus 160 ~~~~~d~~~l--~~~~~~~D~i~~~--~~l--~~-----~--~~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 222 (290)
+++++|..++ .++++++|+|+.. +.+ .. + .+ ....++++.++|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666443 4667778888764 110 00 0 01 1368899999999999887632111
Q ss_pred hhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
....+...++++||.+.+..-+.
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~IiW~ 98 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLVFT 98 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEEEE
Confidence 12456678889999877765553
No 300
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.74 E-value=0.06 Score=47.07 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=68.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--------------------CCCeEEEEeCCH--HHHHHHhhhCC------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEP------------ 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--------------------~~~~v~~vD~s~--~~~~~a~~~~~------------ 155 (290)
+..+||-||.|.|.=...++..+ +...++.||+.+ ..+........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666555443 125899999964 34443332211
Q ss_pred --------CCCceEEEcCCCCCCCCC-------CCccEEEecCccccc-----CCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 156 --------LKECKIVEGDAEDLPFPT-------DYADRYVSAGSIEYW-----PDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 156 --------~~~v~~~~~d~~~l~~~~-------~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.-++.|.+.|+..+..++ ...|+|...+.+.-+ +.-.++|.++...++||..|+|++-.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 113788999987654221 246777665554422 23347999999999999999998643
No 301
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.51 E-value=0.048 Score=42.87 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=72.8
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHH-hhhCCCCCceEEEcCCC-CCCCCCCCccEEEecCccccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-KQKEPLKECKIVEGDAE-DLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~v~~~~~d~~-~l~~~~~~~D~i~~~~~l~~~ 188 (290)
+++.+-+|+.. -+...++-.++..++..+|.++--++.- +.+. ..+...|+. +...-.++||.+.|.++++|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~----ssi~p~df~~~~~~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL----SSILPVDFAKNWQKYAGSFDFAASFSSIEHF 76 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCccccccc----ccccHHHHHHHHHHhhccchhhheechhccc
Confidence 46677777764 2333334444567788888754221111 1110 011111211 011123469999999999877
Q ss_pred C-----C---H---HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 189 P-----D---P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 189 ~-----~---~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
. | + .+.+.++.++|||||.|++..|..... ...+.+ +.+....+.-++ .||+.+.....
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~----i~fNah-RiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA----IQFNAH-RIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc----eEEecc-eeecHhHHHHHh--CCcEEEeeecc
Confidence 2 2 1 367889999999999999988765421 111111 123444454444 49998887554
No 302
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.44 E-value=0.3 Score=43.87 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeC---CHHHHHHHhhhCCCCCceEEE---cCCCCCCCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECKIVE---GDAEDLPFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~v~~~~---~d~~~l~~~~~~~D~i~~~ 182 (290)
++.+||-+|+|. |.++..+++.. +.++++++. +++-.+.+++... +++. .+..+.. ..+.+|+|+-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga----~~v~~~~~~~~~~~-~~~~~d~vid~ 245 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA----TYVNSSKTPVAEVK-LVGEFDLIIEA 245 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC----EEecCCccchhhhh-hcCCCCEEEEC
Confidence 678999999985 77888888876 568999986 6777777775422 2221 1111101 12358988854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. . ...+....+.|+++|.+++....
T Consensus 246 ~g-----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 32 1 23678888999999999876543
No 303
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.35 E-value=0.26 Score=39.98 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=85.1
Q ss_pred CCCEEEEEcCccchhHHHHHhh---C-CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-------CCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-------~~~~~~D~ 178 (290)
.+..|+|+|.-.|.-++..+.. . ...+|+++|++-..++.+... .+++.|+.++-.+.. ..++.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 5688999999998877666543 1 237999999976554443322 358999999887642 22333345
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.+|-.+-|+..+--+.++-+..+|..|-++++.+......+-........ --..+.+...+++.+
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g--~gP~~AVe~ylr~~p 211 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFG--GGPYEAVEAYLREFP 211 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcC--CChHHHHHHHHHhCC
Confidence 56667777766667788888999999999999876654432111110000 012456667777665
No 304
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.12 Score=46.17 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=36.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhC----C----CCeEEEEeCCHHHHHHHhhhCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~----~----~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
....++|||.|.|.++..+++.. | ..++..|++|++..+.=++++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 35689999999999988776543 2 5899999999998887776543
No 305
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.23 E-value=0.11 Score=47.30 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCCCCCC-CCCCCccEEEecC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDAEDLP-FPTDYADRYVSAG 183 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~~~l~-~~~~~~D~i~~~~ 183 (290)
+.+|||.=+|+|.=++..+...+ ..+|+.-|+|+++++.+++|...+ .++....|+..+= .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 46899999999999998888854 478999999999999999884322 3566777774431 24556999863
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.....+-.++..+.+.++.||.|++...
T Consensus 128 --DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 --DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred --CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 3445567899999999999999999754
No 306
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.08 E-value=0.36 Score=43.22 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+++++||=+|||. |.++..+++. .++.+++++|.+++-++.+++ ... .....+. . ....+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---TYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---eeehhhh---h-hccCCcEEEECCCC-
Confidence 3789999999885 6666666664 455789999999988888875 221 1111111 1 11148988843221
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+.....++...++|+++|.+++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123467888999999999988654
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.07 E-value=0.95 Score=39.96 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.. +..+..+-... ....+.+|+++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 4678899888874 78888888886 678999999999888886532 12222111110 123446898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.... ...++++.+.|+++|.++....
T Consensus 239 ~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 4221 3477889999999999987653
No 308
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.80 E-value=0.23 Score=37.63 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=49.1
Q ss_pred ceEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCC
Q 022929 159 CKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (290)
Q Consensus 159 v~~~~~d~~~-l~~~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (290)
+++..+|+.+ ++--...+|+|+... +..-.++ ..+++.+.++++|||.+..-+ .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 4455666632 221124588888653 2222333 479999999999999885422 3
Q ss_pred HHHHHHHHHHCCCcEEEEEEcCccc
Q 022929 234 EEEYIEWFQKAGFKDVQLKRIGPKW 258 (290)
Q Consensus 234 ~~~~~~ll~~aGf~~v~~~~~~~~~ 258 (290)
...++..|.++||.+.+..-.+.+.
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 4568899999999988887776654
No 309
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.70 E-value=0.61 Score=41.10 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+||=+|||. |.++..+++..+...+.++|.+++.++.+.+.. .+ |..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~i--~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------VL--DPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------cc--Chhhc--cCCCCCEEEECCC----
Confidence 567888889885 788888888875445778899888777665321 11 11110 1235898885422
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|+++|.+++...
T Consensus 210 -~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2467888899999999998654
No 310
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.084 Score=48.75 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC-CeEEEEeCCHHHHHHHhhhCCCCC----ceEEEcCCCCC----CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDL----PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----v~~~~~d~~~l----~~~~~~~D~i~ 180 (290)
++.+|||.=|++|.-++..++..++ .++++.|.++.++...+++...+. ++....|+..+ +.....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 5679999999999999999999876 689999999999999998866543 33344555321 23346799886
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
. .....+..+|..+.+.++.||.|++....
T Consensus 189 L----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 L----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred c----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 3 33344567999999999999999997553
No 311
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.43 E-value=0.47 Score=41.74 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=51.5
Q ss_pred CCCCEEEEEccCCCchhHhhhhH----HH----hh-----cCCCHHHHHHHHHHCCCcEEEEEEcCccccccccccccee
Q 022929 203 KLGGKACIIGPVYPTFWLSRYFA----DV----WM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIM 269 (290)
Q Consensus 203 ~pgG~l~i~~~~~~~~~~~~~~~----~~----~~-----~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~ 269 (290)
+|||.-.++++.....-..-+.. +. .. .--+.+.|..+++++|-+.+++-.........-..+..+.
T Consensus 151 ~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~GVkgiHiaeRdTqra~~Pkp~n~fw 230 (481)
T COG5310 151 NPGGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAGVKGIHIAERDTQRAKKPKPFNGFW 230 (481)
T ss_pred CCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcCCceEEEEeeccccCCCCCCCcccc
Confidence 68898888877655422221111 11 10 1125689999999999999998776543332223334444
Q ss_pred eeEEEEecCCCCCCCccccc
Q 022929 270 GCSVTGVKPASGDSPLQVTI 289 (290)
Q Consensus 270 ~~~~~a~k~~~~~~~~~~~~ 289 (290)
+.+.+.-..+.|.+|..+|+
T Consensus 231 ntWsveGfi~EG~qPaElgW 250 (481)
T COG5310 231 NTWSVEGFITEGLQPAELGW 250 (481)
T ss_pred cceeeeeeccCCCChhhhcc
Confidence 45555545567778877664
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.35 E-value=0.97 Score=40.22 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+++.+||=.|+|. |..+..+++.. +.++++++.+++-.+.+++.... .+ .|..+. ..+.+|+++-....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAA----SA-GGAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCc----ee-cccccc--CcccceEEEECCCc--
Confidence 4789999999864 66677777776 56899999999988888875321 11 111111 12347876543221
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+....+.|++||.+++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 1367888899999999988664
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.14 E-value=0.74 Score=39.00 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
.++.+||..|+|+ |..+..+++.. +.++++++.+++..+.+++... . .++...-... ....+.+|+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-D--HVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-c--eeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 3788999999996 77777777775 5899999999888887765421 1 1111110000 0123459999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
..- ...+..+.+.|+++|.++.....
T Consensus 209 ~~~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VGG------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCC------HHHHHHHHHhcccCCEEEEEccC
Confidence 221 14567788899999999876543
No 314
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.14 E-value=1.8 Score=38.12 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=77.4
Q ss_pred EEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCccc---
Q 022929 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE--- 186 (290)
Q Consensus 113 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~l~--- 186 (290)
+++|+-||-|.+...+.+.. ...+.++|+++.+.+.-+.|.. ....+|+.++. ++. .+|+++...--.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 68999999999999998872 3568889999999999998875 77888887764 443 499998732111
Q ss_pred ------ccCCHH-HHH---HHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 187 ------YWPDPQ-RGI---REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 187 ------~~~~~~-~~l---~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
...+.. .++ -++.+.++|.- ++.+....-...... ...+.+.+.|++.|+.+ ....+..
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vlna 144 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLNA 144 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEEG
T ss_pred ccccccccccccchhhHHHHHHHhhccceE--EEecccceeeccccc--------cccccccccccccceee-hhccccH
Confidence 112222 122 33344556743 333333221110000 12477889999999964 4555554
Q ss_pred cc
Q 022929 257 KW 258 (290)
Q Consensus 257 ~~ 258 (290)
..
T Consensus 145 ~~ 146 (335)
T PF00145_consen 145 AD 146 (335)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 315
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.13 E-value=0.19 Score=45.07 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
.-+.|+|+|.|.|.++..+.-.+ +..|.+||-|+...+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 56789999999999999998887 7899999999887777764
No 316
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.02 E-value=0.14 Score=45.32 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh-------hCC----C-CCceEEEcCCCCCCC-CCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEP----L-KECKIVEGDAEDLPF-PTDY 175 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-------~~~----~-~~v~~~~~d~~~l~~-~~~~ 175 (290)
++|+.|.|--.|+|.++...+.- |+.|.|.||+-.++...+. |+. . .-+.++.+|....+. ....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 48999999999999999988887 8999999998877764322 111 1 125567778766542 2457
Q ss_pred ccEEEec------------------------CcccccCCH---------HHHHHHHHhccCCCCEEEEEcc
Q 022929 176 ADRYVSA------------------------GSIEYWPDP---------QRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 176 ~D~i~~~------------------------~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
||.|+|. ....|.|.. ..++.-..+.|..||++++.-+
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999991 112233221 2466677899999999988654
No 317
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.91 E-value=1.3 Score=40.94 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred HHhhccccCCCCCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCc
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~ 176 (290)
.+.+++.....-++++|+=+|+|. |......++.. +.+|+.+|.++.-...|+.. +.+.. +..+ .. ..+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e-~v--~~a 258 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEE-AV--KEG 258 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHH-HH--cCC
Confidence 344444444434789999999997 66666666665 56899999999887777753 22221 1111 11 237
Q ss_pred cEEEecCcccccCCHHHHHH-HHHhccCCCCEEEEEccC
Q 022929 177 DRYVSAGSIEYWPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~~~ 214 (290)
|+|+... ... ..+. ...+.+++||.++.....
T Consensus 259 DVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 259 DIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 9998642 222 3444 458899999999887643
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.87 E-value=0.54 Score=35.38 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=60.7
Q ss_pred ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEecCcccccCCHHH
Q 022929 120 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVSAGSIEYWPDPQR 193 (290)
Q Consensus 120 G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~~~~l~~~~~~~~ 193 (290)
|-|..+..+++..+ .+++++|.++.-++.+++... ..++..+-.++ ...+..+|+|+-.-. -..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc---cccccccccccccccccccccccceEEEEecC------cHH
Confidence 45788889999885 999999999999999987531 12222222111 123346999985432 146
Q ss_pred HHHHHHhccCCCCEEEEEccCC
Q 022929 194 GIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 194 ~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.++....+|+++|.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.81 E-value=0.84 Score=40.52 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcC---CCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d---~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+||-.|||. |..+..+++.. +. ++++++.+++..+.+++.. .. .++..+ ..........+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g-~~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMG-AD--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcC-CC--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678898888876 77777788876 55 7999999988888666532 11 122111 1111112234899986432
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. ...++.+.+.|+++|.++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 235778889999999998764
No 320
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.70 E-value=1.5 Score=39.13 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~l~~ 187 (290)
..+++|+-||.|.+..-+.... -.-+.++|+++.+++.-+.+... ..+...|+..+. +....+|+++...--..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 4679999999999998887762 35677899999999999888753 455666765433 11115899987322221
Q ss_pred ---------cCCHH----HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 188 ---------WPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 188 ---------~~~~~----~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
..|+. --+.++...++| .+++.+....-... .-...+.+.+.|++.||.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---------CchHHHHHHHHHHHcCCc
Confidence 22222 234456666777 55555544332111 122568999999999997
No 321
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.65 E-value=1.8 Score=38.46 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=75.0
Q ss_pred EEEEcCccchhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc----
Q 022929 114 VVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY---- 187 (290)
Q Consensus 114 vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~---- 187 (290)
|+|+-||.|.+..-+.+. +.+ +.++|+++.+.+.-+.|... .++.+|+.++... -..+|+++...--..
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 589999999999988776 455 56799999999999888753 4456777665421 124899876321111
Q ss_pred -----cCCHH-HHHHHHHhc---cCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 188 -----WPDPQ-RGIREAYRV---LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 188 -----~~~~~-~~l~~~~~~---L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..+.. .++.++.++ ++|. +++.+....-.... .-.....+.+.|++.||.+. ...+..
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~-~~~l~a 142 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVY-YKVLNA 142 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEE-EEEEcH
Confidence 12222 334444444 4554 44444433211100 01134678888999999753 444443
No 322
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.58 E-value=1.3 Score=38.97 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCC----CC-----CC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLP----FP-----TD 174 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~----~~-----~~ 174 (290)
...|+-+|||--.-+-.+ ..| +.+|+=+|. |+.++.=++.+.. .+..++..|+.+.. +. ..
T Consensus 93 ~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 478999999864332222 222 467777887 7777665554332 25788999997422 22 33
Q ss_pred CccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCchhHh-------hhh-------HHHhhcCCCHHHHH
Q 022929 175 YADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RYF-------ADVWMLFPKEEEYI 238 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~ 238 (290)
.--++++-.++.+++.. ++++..+...+.||..++............ ... ...+....+..++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 34478889999999865 479999999999999888765322111111 001 11222234689999
Q ss_pred HHHHHCCCcEEEE
Q 022929 239 EWFQKAGFKDVQL 251 (290)
Q Consensus 239 ~ll~~aGf~~v~~ 251 (290)
.++.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999986655
No 323
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=1.6 Score=37.00 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCC----CeEEEEeCCHHHHHHHhhhC--CCCC--ceEEEcCCCC-CC-CCCCCcc-E
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKE--PLKE--CKIVEGDAED-LP-FPTDYAD-R 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~----~~v~~vD~s~~~~~~a~~~~--~~~~--v~~~~~d~~~-l~-~~~~~~D-~ 178 (290)
.+...+|+|+|+..-+..+...+.. .+++.+|+|...+....+.. ..++ +.-+++|.+. +. .+..+-- .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4688999999999877777665433 78999999998776544331 1233 3345666632 11 1122112 2
Q ss_pred EEecCcccccCCH--HHHHHHHHhccCCCCEEEEE
Q 022929 179 YVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 179 i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 211 (290)
++....+..+... ..++.+++..|+||-++++.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3345556665432 36999999999999999885
No 324
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.43 E-value=0.37 Score=42.19 Aligned_cols=99 Identities=22% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|.-||.|. |..+..++-.. +..|+.+|+|.+-+......+. .+++.+..+...+.-.-.+.|+++..-.+--.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 456788899985 77777777765 7899999999988887776654 34666666554443233458999976555555
Q ss_pred CCHHHHHHHHHhccCCCCEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i 210 (290)
..|.-+.+++...+|||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 6677789999999999998863
No 325
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.32 E-value=0.66 Score=41.75 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++++||-.|+|. |..+..+++..+..+|+++|.+++-.+.+++... . .++...-.+. ......+|+|+-
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA-T--HTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 4789999999875 7777888887633369999999999988875422 1 1121111110 012235898884
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...++...+.++++|.+++...
T Consensus 252 ~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 252 AVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 322 2 2356777889999999988754
No 326
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.22 E-value=0.38 Score=40.26 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccchhHHHH-HhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEc-CCCC----CCCCCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEG-DAED----LPFPTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~-d~~~----l~~~~~~~D~ 178 (290)
+..++||||.|.-.+--.+ ...+ +++.+|.|+++..++.|+.....+ .+++... |-.. +--..+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999975432111 1222 789999999999999998764322 2444322 2211 1112467999
Q ss_pred EEecCcccc
Q 022929 179 YVSAGSIEY 187 (290)
Q Consensus 179 i~~~~~l~~ 187 (290)
.+|+--+|.
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999877763
No 327
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.12 E-value=0.28 Score=44.84 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=48.3
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC----CCceEEEcCCCCCCCC-CCCccEEEe
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP-TDYADRYVS 181 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~v~~~~~d~~~l~~~-~~~~D~i~~ 181 (290)
...|||||+|+|.++...+... +-.|++++.-..|.+.|++-... +++.++.....++... ..+.|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3579999999999998888874 56799999999999999865332 3455555443333211 223566554
No 328
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=4.7 Score=35.44 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCC------------------------CCceEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL------------------------KECKIVE 163 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~------------------------~~v~~~~ 163 (290)
....|+.+|||.-.+...+.... +...++=||.++.....+...-.. .+-..+.
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 56889999999988887777765 457788888877666655211000 0112223
Q ss_pred cCCCCCC----------CCCCCccEEEecCcccccCCHH--HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHh---
Q 022929 164 GDAEDLP----------FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--- 228 (290)
Q Consensus 164 ~d~~~l~----------~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~--- 228 (290)
.|+.++. ....-.-++++-.++.+++..+ .+++.+.........+ .-++..+...+...+....
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~Fg~vM~~nlk~r 245 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDRFGKVMLANLKRR 245 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCChHHHHHHHHHHhc
Confidence 3333211 1111233455566666665433 4666666666555544 4444444444444433222
Q ss_pred -------hcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 229 -------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 229 -------~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
..|.|.++.++-+.++||+-+.+.++-.
T Consensus 246 ~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~e 280 (335)
T KOG2918|consen 246 GCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNE 280 (335)
T ss_pred CCCCchhhhcccHHHHHHHHHhcCCceeehhhHHH
Confidence 2357899999999999999888877653
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.89 E-value=0.71 Score=41.79 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
+++.+||=.|+|. |..+..+++..+..+|+++|.+++-++.+++... . .++..+-.++ ....+.+|+|+-.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA-T--ATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC-c--eEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 3778898899875 7777778887633379999999999998875422 1 1111111110 0112258988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. . ...+....+.|+++|.+++...
T Consensus 267 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 267 AG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 21 1 2466778889999999987654
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.73 E-value=0.77 Score=39.78 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CC----CCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DA----EDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~----~~l~~~~~~~D~i~~~~ 183 (290)
++.+||=+|+|. |..+..+++..+..+++++|.+++-++.+++... . .++.. +. ..+ .....+|+++-..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~-~~~~g~d~vid~~ 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-T--ALAEPEVLAERQGGL-QNGRGVDVALEFS 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-c--EecCchhhHHHHHHH-hCCCCCCEEEECC
Confidence 678999999875 7777778887633459999999988888876432 1 11110 10 001 1223489887532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ....++.+.+.|+++|.+++...
T Consensus 196 G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 G------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred C------ChHHHHHHHHHhcCCCEEEEecc
Confidence 1 12467788999999999988764
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.52 E-value=0.82 Score=40.64 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=60.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCC---CC-C-CCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAE---DL-P-FPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~---~l-~-~~~~~~D~i~~~ 182 (290)
++.+||=+|+|. |..+..+++.. +.+ ++++|.+++-.+.+++... . .++...-. .+ . .....+|+|+-.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga-~--~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGA-D--FVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 688999998874 66777778776 455 9999999998888875432 1 11111100 00 0 122359998843
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. ....+....+.|+++|.+++...
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22 12355677889999999987654
No 332
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.23 E-value=9.1 Score=36.00 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCC
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL 169 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l 169 (290)
..+++|+-||.|.+...+... +...+.++|+++.+.+.-+.|... +....+..|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhC
Confidence 569999999999999988766 345667899999998888887631 2334455666554
No 333
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.08 E-value=0.37 Score=43.40 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=80.0
Q ss_pred cHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh----------CCC--CCceE
Q 022929 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPL--KECKI 161 (290)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~----------~~~--~~v~~ 161 (290)
..+.+..+.+.+... +++...|+|+|-|.....++.......-+|+++....-+.+..+ ++. ..++.
T Consensus 177 ~~~ql~si~dEl~~g-~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLG-PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccC-CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 344555667777765 88999999999999999888876556778888776444443322 222 23667
Q ss_pred EEcCCCCCC---CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 162 VEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 162 ~~~d~~~l~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
++++..+.. .-....++|+++++... ++...-++++..-+++|-+++-..+..+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 777775422 12235889998887753 2223344588888899998876655544
No 334
>PTZ00357 methyltransferase; Provisional
Probab=91.04 E-value=0.87 Score=44.18 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=62.0
Q ss_pred CEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhC----CC--------CCceEEEcCCCCCCCCC--
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE----PL--------KECKIVEGDAEDLPFPT-- 173 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~----~~--------~~v~~~~~d~~~l~~~~-- 173 (290)
..|+-+|+|-|-+.....+... ..++++||-++.+....+.+. .. ..|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999987665544321 368999999966443333221 11 23899999998864321
Q ss_pred ---------CCccEEEecCcccccCCH--HHHHHHHHhccCC----CCE
Q 022929 174 ---------DYADRYVSAGSIEYWPDP--QRGIREAYRVLKL----GGK 207 (290)
Q Consensus 174 ---------~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p----gG~ 207 (290)
+++|+||+-..-.+-.+. .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999985433322222 2677888888876 675
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.93 E-value=3.2 Score=30.45 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=60.5
Q ss_pred CccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcccccCCHH
Q 022929 119 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 192 (290)
Q Consensus 119 ~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l~~~~~~~ 192 (290)
||.|.++..+++.+ .+..++.+|.+++.++.+++.. +.++.+|..+.. ..-.++|.+++..- +..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----VEVIYGDATDPEVLERAGIEKADAVVILTD-----DDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----SEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----cccccccchhhhHHhhcCccccCEEEEccC-----CHH
Confidence 34445555554432 2468999999999999888643 678999987642 22235787776432 332
Q ss_pred --HHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEE
Q 022929 193 --RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (290)
Q Consensus 193 --~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 249 (290)
..+....+-+.|...++.... ..+..+.|+++|.+.+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~--------------------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN--------------------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES--------------------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--------------------CHHHHHHHHHCCcCEE
Confidence 233345566667777766532 2344567777776543
No 336
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.76 E-value=1.3 Score=40.85 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=67.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcC-C---CCCCCCC-CCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPL--KECKIVEGD-A---EDLPFPT-DYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d-~---~~l~~~~-~~~D~i~ 180 (290)
..+.++|+|.|.|.-...+....+ ...++.||.|..|......+... ..-+.+... . ..+|... ..||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 457788998887655444444433 36799999999999888766443 111111111 1 1123333 3499999
Q ss_pred ecCcccccCCHH---HHH-HHHHhccCCCCEEEEEccCC
Q 022929 181 SAGSIEYWPDPQ---RGI-REAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 181 ~~~~l~~~~~~~---~~l-~~~~~~L~pgG~l~i~~~~~ 215 (290)
+.+.++++.+.. ... .-+....++|+.+++++...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999987653 233 34456678899999886643
No 337
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.66 E-value=1.3 Score=39.65 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---C--CCCCCCcc-EEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---L--PFPTDYAD-RYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l--~~~~~~~D-~i~~ 181 (290)
.++.+||=.|+|. |..+..+++..+...+++++.+++-.+.+++... . .++..+-.. + ......+| +|+-
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA-M--QTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--eEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 3678999999875 7777778887643347899999998888765321 1 111111000 0 01223477 5542
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
. ... ...+....+.|++||.+++....
T Consensus 236 ~-----~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 236 T-----AGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred C-----CCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 2 111 34678888999999999987543
No 338
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.17 E-value=0.51 Score=40.58 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCccchhHHHHHhhC-----CCCeEEEEeCCHHHHHHHhhh-CCC--CCceEEEcCCCCCC
Q 022929 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQK-EPL--KECKIVEGDAEDLP 170 (290)
Q Consensus 109 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~-~~~--~~v~~~~~d~~~l~ 170 (290)
.++..++|+|||.|.++..++... +...++.||-...-...-.+. ... ..++-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 477899999999999999999887 457899999854222111111 111 24556667776654
No 339
>PLN02740 Alcohol dehydrogenase-like
Probab=90.06 E-value=1.8 Score=39.29 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC-----CCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-----AED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d-----~~~-l-~~~~~~~D~i~ 180 (290)
.++++||=+|+|. |..+..+++..+..+|+++|.+++-++.+++... . .++..+ ..+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4789999999885 7777788888643379999999999998876422 1 122111 100 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...++.....+++| |.+++...
T Consensus 274 d~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 5332 1 24667777888886 98877654
No 340
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.00 E-value=2.8 Score=38.25 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCCEEEEEcCccch----hHHHHHhhC---CCCeEEEEeC----CHHHHHHHhhhCC----CCC--ceEEE---cCCCCC
Q 022929 110 RNMLVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CKIVE---GDAEDL 169 (290)
Q Consensus 110 ~~~~vLDiG~G~G~----~~~~l~~~~---~~~~v~~vD~----s~~~~~~a~~~~~----~~~--v~~~~---~d~~~l 169 (290)
+.-+|+|+|.|.|. +...++.+. |..++|+++. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 56799999999996 444444442 3589999999 7777776665521 123 33333 233333
Q ss_pred C-----CCCCCccEEEecCcccccCC-------HHHHHHHHHhccCCCCEEEEE
Q 022929 170 P-----FPTDYADRYVSAGSIEYWPD-------PQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 170 ~-----~~~~~~D~i~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~ 211 (290)
. ...+.+=+|-|...+|++.+ +...+-...+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 1 22232334445666777752 223344555678998666664
No 341
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.98 E-value=3.8 Score=35.07 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++......+..... . ......+|+++.....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~d~vl~~~~~- 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTA---D-EIGGRGADVVIEASGS- 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccch---h-hhcCCCCCEEEEccCC-
Confidence 3788899889875 77777788876 456 9999999988887775431111110000 1 1123458988853211
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...+....+.|+++|.++...
T Consensus 170 -----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 -----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -----hHHHHHHHHHhcCCcEEEEEe
Confidence 236678888999999998764
No 342
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.66 E-value=0.12 Score=44.79 Aligned_cols=97 Identities=27% Similarity=0.364 Sum_probs=64.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCce----EEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECK----IVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~----~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+..|+|+=+|-|+++....-..+...|+++|.++..++..+.++..+++. .+.+|-.. +-++...|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeecc--
Confidence 458899999999999984433335689999999999999988877655543 33444433 33345577776432
Q ss_pred cccCCHHHHHHHHHhccCCCCE-EEEE
Q 022929 186 EYWPDPQRGIREAYRVLKLGGK-ACII 211 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~-l~i~ 211 (290)
+|.-++-.-.+..+|+|.|- ++-+
T Consensus 271 --lPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred --ccccccchHHHHHHhhhcCCcEEEE
Confidence 34444444556777887544 4433
No 343
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.57 E-value=2.2 Score=38.26 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCCCC----C--CCCCCcc---
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDL----P--FPTDYAD--- 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~~l----~--~~~~~~D--- 177 (290)
+++.+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++... .. +.....+..++ . .....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGA-DLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-ceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 3789999999976 77778888886 5689999999999988876422 11 10001000000 0 1112354
Q ss_pred -EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 178 -RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 178 -~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
+|+- .... ...++...++|++||++++....
T Consensus 243 d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4442 1211 24566778899999999887643
No 344
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.49 E-value=2 Score=37.07 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh---CCCCCceEEEcCCCCCCCCC---CCccEEEecC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFPT---DYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~v~~~~~d~~~l~~~~---~~~D~i~~~~ 183 (290)
.++.|+-+| ..-..++.++-..-..++..+|+++..+....+- ...+|++.+..|+.+ |+++ .+||+++..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD- 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD- 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC-
Confidence 678899999 4444444444332257899999999887776543 455678999999976 5544 469988732
Q ss_pred cccccCCHHHHHHHHHhccCCC---CEEEEE
Q 022929 184 SIEYWPDPQRGIREAYRVLKLG---GKACII 211 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pg---G~l~i~ 211 (290)
--..++....++.+=...||.- |++.+.
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 1122222334555555666655 566554
No 345
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.48 E-value=0.59 Score=35.34 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccc-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~ 187 (290)
+..+|+|||-|.= ..+..|.+. +..|+++|+.+. .+ . .++.++..|+.+..+. -...|+|++...-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a----~-~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA----P-EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc----c-cCcceeeecccCCCHHHhcCCcEEEEeCCC--
Confidence 3459999999974 455666666 699999999887 12 2 4778999999873311 1348999975432
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
++.+..+.++.+.+ |.-+++..
T Consensus 81 -~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 -PELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred -hHHhHHHHHHHHHh--CCCEEEEC
Confidence 23334444444433 44555543
No 346
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.37 E-value=5.8 Score=36.35 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc---CCCC-CC--CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---DAED-LP--FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~---d~~~-l~--~~~~~~D~i~~ 181 (290)
.++++||=.|+|. |..+..+++..+...++.+|.+++-++.+++... . .+... +..+ +. .....+|+++-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-E--TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-e--EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3678887788875 7777778887644456677898888888886432 1 11111 1100 00 12235898885
Q ss_pred cCcccc--------cCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 182 AGSIEY--------WPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 182 ~~~l~~--------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
...... ..+....+++..+++++||.+++....
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 433210 011234788899999999999987653
No 347
>PLN02827 Alcohol dehydrogenase-like
Probab=89.37 E-value=1.6 Score=39.78 Aligned_cols=96 Identities=21% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++.. +... + ....+.+|+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-T--DFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4789999999875 7777778887644468999999998888875422 1 11211 1100 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.+++| |.+++...
T Consensus 269 d~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 5322 1 23567788889998 99987643
No 348
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.20 E-value=0.86 Score=42.29 Aligned_cols=106 Identities=18% Similarity=0.022 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC---CceEEEcCCCC-------CCCCCCCccEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAED-------LPFPTDYADRY 179 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~v~~~~~d~~~-------l~~~~~~~D~i 179 (290)
.+..+|-+|-|.|.+...+...+|..+++++++++++++.|+.++... +......|..+ ..-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 456788999999999999999999899999999999999999875421 11122222211 01134568988
Q ss_pred EecC-c--ccccCCH------HHHHHHHHhccCCCCEEEEEccCC
Q 022929 180 VSAG-S--IEYWPDP------QRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 180 ~~~~-~--l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
...- . .+-...+ +.++..+...|.|.|.+++---..
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 7521 1 2222211 368889999999999997754443
No 349
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.12 E-value=0.25 Score=44.87 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-----CceEEEcCC
Q 022929 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDA 166 (290)
Q Consensus 107 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~v~~~~~d~ 166 (290)
..+++..|.|+-||-|-++..++.. ++.|++-|+++++++..+.+...+ +++.+..|.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 3458999999999999999999988 699999999999999999886543 355555555
No 350
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.00 E-value=1.4 Score=32.70 Aligned_cols=85 Identities=21% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCEEEEEcCccc-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCC-CCCccEEEecCccccc
Q 022929 111 NMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYW 188 (290)
Q Consensus 111 ~~~vLDiG~G~G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~-~~~~D~i~~~~~l~~~ 188 (290)
..+|+|+|-|-= ..+..++++ +..++++|+++. +.. .++.++..|+.+.... -...|+|+|.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~~~v~DDitnP~~~iY~~A~lIYSiR----- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGLRFVVDDITNPNISIYEGADLIYSIR----- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccceEEEccCCCccHHHhhCccceeecC-----
Confidence 358999999864 345556665 689999999776 222 5788999999874311 13378888632
Q ss_pred CCHHHHHHHHHhccCC-CCEEEEE
Q 022929 189 PDPQRGIREAYRVLKL-GGKACII 211 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~p-gG~l~i~ 211 (290)
.+.++.+.+.++.+. |.-+++.
T Consensus 79 -pppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 79 -PPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred -CCHHHHHHHHHHHHhhCCCEEEE
Confidence 233444444444433 3445444
No 351
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.86 E-value=7.6 Score=35.78 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
-++++|+=+|+|. |......++.+ +.+|+++|.++.-...+... +.... ++.+. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~----G~~v~--~leea-l--~~aDVVItaT---- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD----GFRVM--TMEEA-A--KIGDIFITAT---- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc----CCEeC--CHHHH-H--hcCCEEEECC----
Confidence 3789999999997 66655566655 67999999888654444321 22221 22221 1 2479988642
Q ss_pred cCCHHHHHH-HHHhccCCCCEEEEEccC
Q 022929 188 WPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~~~~~~l~-~~~~~L~pgG~l~i~~~~ 214 (290)
.. ..++. +....+|+|+.++.....
T Consensus 259 -G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 -GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 22 33444 588899999999887654
No 352
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.28 E-value=3 Score=33.70 Aligned_cols=95 Identities=21% Similarity=0.146 Sum_probs=56.6
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--------------------CCceEEEcCCCCCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAEDLP 170 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------~~v~~~~~d~~~l~ 170 (290)
+|.=||+|. | .++..++.. +.+|+.+|.+++.++.++++... .++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 366789986 4 344445554 89999999999988887654210 1122 344544432
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
..|+|+=. +.+.++-.+++++++.+++.|+-.+.-.+...
T Consensus 78 ----~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 ----DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ----TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred ----hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 37887732 33344445689999999999999887754433
No 353
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.25 E-value=3 Score=37.64 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+..... .++. .+...+....+.+|+++-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD--SFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc--EEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 3678888899885 77878888886 568888887765443332222211 1111 110011000124888884322
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++...+.|+++|.++....
T Consensus 257 ---~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ---A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 2356778899999999987653
No 354
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.18 E-value=4.3 Score=36.51 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|+-.|+|. |..+..+++.. +.++++++.+++....+.+..... ..+. .+...+.-....+|+++-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~g-- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGAD--DYLVSSDAAEMQEAADSLDYIIDTVP-- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCc--EEecCCChHHHHHhcCCCcEEEECCC--
Confidence 4678888888774 77777788876 567888888877666554433321 1111 110011000124788874321
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...++.+.+.|+++|.++....
T Consensus 254 ---~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---V-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---c-hHHHHHHHHHhccCCEEEEECC
Confidence 1 2366778899999999988754
No 355
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=87.71 E-value=8.6 Score=33.81 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l----~~~~~~~D~i~~~ 182 (290)
.++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++... . .++..+-.+. ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 3778999998763 67777778876 455 8899999988887764321 1 1222111110 1133459999854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ....+..+.+.|+++|.++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1246778889999999998764
No 356
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.65 E-value=1.3 Score=40.25 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.+|+=+|+|. |..+...+... +.+|+.+|.+++..+.+...... .+.....+...+.-.-..+|+|+..-....-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 456799999984 67777777766 56899999998877766544321 1111111111111001248999975322111
Q ss_pred CCHHHHHHHHHhccCCCCEEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+.+.-+-++..+.++|++.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 11222335566778999877653
No 357
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.63 E-value=3 Score=36.89 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHH-HHHhhhCCCCCceEEEc-CCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~v~~~~~-d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|+-||+|. |......+...+..+++.+|.+++-. +.+++. .. ..... |..+. . ..+|+|++...-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~---~~~~~~~~~~~-l--~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG---NAVPLDELLEL-L--NEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC---eEEeHHHHHHH-H--hcCCEEEECCCCC
Confidence 678999999985 55444444443356899999997754 444432 21 22221 11111 1 2389999865543
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHH
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (290)
+. ...+..+......++.+ +.+...+.........-.....++.++|.++.++
T Consensus 250 ~~---~~~~~~~~~~~~~~~~~-viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 250 HY---AKIVERAMKKRSGKPRL-IVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred ch---HHHHHHHHhhCCCCCeE-EEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 32 33334433333223444 4444433221111111011123467777776554
No 358
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.61 E-value=5.1 Score=35.27 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-CCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-~~~~~~D~i~~~~~l~ 186 (290)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.. .. .++...-.... ...+.+|+++....-
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~d~vi~~~~~- 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG-AD--EVVDSGAELDEQAAAGGADVILVTVVS- 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC-Cc--EEeccCCcchHHhccCCCCEEEECCCc-
Confidence 367889999987 577777777775 678999999998888875432 11 11111100000 012358988854211
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
...+..+.+.|+++|.++....
T Consensus 236 -----~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 236 -----GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -----HHHHHHHHHhcccCCEEEEECC
Confidence 2356778899999999987653
No 359
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.53 E-value=2.4 Score=37.82 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCc--cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-C--CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L--PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l--~~~~~~~D~i~~~~ 183 (290)
+++.+||=.|+. -|.+++.+++..+. .++++--+++-.+.+++.....-+.+...|+.+ + ......+|+|+..-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 368999999843 47899999999744 777777777777777665432223333333311 1 12233699999543
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.- ..+.+....|+++|.++......
T Consensus 220 G~-------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 GG-------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CH-------HHHHHHHHHhccCCEEEEEecCC
Confidence 32 46777889999999998875543
No 360
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.47 E-value=3.1 Score=37.12 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----C-CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~-~~~~~~D~i~~ 181 (290)
+++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++..+-.++ . .....+|+++.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA-T--DIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--eEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 3678999888874 7777778887644469999999888888775321 1 1111111110 0 12345898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...+..+.+.|+++|.++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 322 1 2467888999999999887543
No 361
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.12 E-value=3.1 Score=35.53 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCEEEEEcCccchhHHHHHh---hC--CCCeEEEEeCCH--------------------------HHHHHHhhhCC----
Q 022929 111 NMLVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEP---- 155 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~---~~--~~~~v~~vD~s~--------------------------~~~~~a~~~~~---- 155 (290)
+..|+|+||-.|..+..++. .+ ++.++++.|.=+ ...+..+++..
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 46799999999986655433 22 356788887521 13344444433
Q ss_pred -CCCceEEEcCCC-CCC-CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCC
Q 022929 156 -LKECKIVEGDAE-DLP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP 232 (290)
Q Consensus 156 -~~~v~~~~~d~~-~l~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 232 (290)
..++.++.+.+. .+| .+..++-++..- ...-......|+.+...|.|||.+++-+...+.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g--------------- 217 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG--------------- 217 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------------
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------------
Confidence 246888888873 233 222223222221 111122346899999999999999987765511
Q ss_pred CHHHHHHHHHHCCCc
Q 022929 233 KEEEYIEWFQKAGFK 247 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~ 247 (290)
..+.+.+.+++.|.+
T Consensus 218 cr~AvdeF~~~~gi~ 232 (248)
T PF05711_consen 218 CRKAVDEFRAEHGIT 232 (248)
T ss_dssp HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCC
Confidence 235566778888875
No 362
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=86.81 E-value=7.9 Score=33.88 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. ... ... +.... .....+|+++-...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~---~~~-~~~~~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-GVE---TVL-PDEAE-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCc---EEe-Ccccc-ccCCCCCEEEECCC---
Confidence 3678898888764 56666667765 67799999999988888863 211 111 11111 23345999985421
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....+..+.+.|+++|.++...
T Consensus 224 ---~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ---SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---ChHHHHHHHHHhhcCCEEEEEc
Confidence 1345677888999999998743
No 363
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.48 E-value=7.2 Score=34.84 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC--CCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED--LPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~--l~~~~~~~D~i~~ 181 (290)
+++.+|.-+|||- |..++.-++..+..+++++|++++-++.|++... .+++.. |+-+ ....+...|..+
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA---T~~vn~~~~~~vv~~i~~~T~gG~d~~~- 259 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA---THFVNPKEVDDVVEAIVELTDGGADYAF- 259 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC---ceeecchhhhhHHHHHHHhcCCCCCEEE-
Confidence 4789999999985 7777777787777899999999999999997633 222222 1100 012233466664
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+...+. ..++.....+.++|..+++..
T Consensus 260 ----e~~G~~-~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 260 ----ECVGNV-EVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred ----EccCCH-HHHHHHHHHHhcCCeEEEEec
Confidence 222333 377888888888999888643
No 364
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=86.34 E-value=4.2 Score=36.74 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cC----CCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GD----AED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d----~~~-l-~~~~~~~D~i~ 180 (290)
+++.+||=.|+|. |..+..+++..+..+|+++|.+++-++.+++... .. .+. .+ ..+ + ....+.+|+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga-~~--~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA-TD--CVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-Ce--EEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4789999999875 7777888888643479999999999998876432 11 111 11 000 0 01112588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 261 d~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 261 ECIG-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ECCC-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 4322 1 23567778889886 98887654
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.30 E-value=1 Score=41.11 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=54.0
Q ss_pred HHHHHHhhhCCCCCceEEEcCCCCC--CCCCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 145 HQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 145 ~~~~~a~~~~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+..+..+++. .+++++.+++.+. ..+++++|.++....+.|.++. .+.++++.+.++|||++++-+...+.
T Consensus 265 e~f~~lr~~~--drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 265 ENFEALRARL--DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred hHHHHHhcCC--CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 4444444444 5788899888653 2457789999999999999764 47999999999999999997665543
No 366
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.27 E-value=14 Score=34.02 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred CCCCEEEEEc-Cc-cchhHHHHHhhCC--CCeEEEEeCCHHHHHHHhhhCCCC----CceEEEcCCC---CC-----C-C
Q 022929 109 NRNMLVVDVG-GG-TGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE---DL-----P-F 171 (290)
Q Consensus 109 ~~~~~vLDiG-~G-~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~v~~~~~d~~---~l-----~-~ 171 (290)
+++.+|+=+| +| -|..+..+++..+ ..+++++|.+++-++.+++..... +......|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3678898887 45 4788888887752 247999999999999988752210 2221111211 11 0 1
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
....+|+++.... . ...+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2235898885321 1 24677788999988876543
No 367
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.13 E-value=7.1 Score=35.67 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=48.1
Q ss_pred CEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEec
Q 022929 112 MLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 112 ~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
.+||=||||. |......+......+|+..|-|.+..+.+..... .+++..+.|+.+.+ .-.+ +|+|++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~-~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKD-FDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhc-CCEEEEe
Confidence 4799999974 5444444333334899999999999888876643 27888999987753 2223 6988863
No 368
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.00 E-value=15 Score=33.91 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=55.3
Q ss_pred CEEEEEcCccc--hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCce-----EE-EcCCCCCCCCCCCccEEE
Q 022929 112 MLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECK-----IV-EGDAEDLPFPTDYADRYV 180 (290)
Q Consensus 112 ~~vLDiG~G~G--~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~-----~~-~~d~~~l~~~~~~~D~i~ 180 (290)
.+|.=||.|.- .++..+++. +.+|+++|.+++.++....... .++++ .. .+.+.. ....+..|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~-~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA-TTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee-ecccccCCEEE
Confidence 56888898863 344445555 6899999999998886432110 00000 00 000000 00012378877
Q ss_pred ecCccc-------ccCCHHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 181 SAGSIE-------YWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 181 ~~~~l~-------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
..---. .+......++.+...+++|..+++.+...+.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 532221 1112235677888889888877776655543
No 369
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.97 E-value=4.5 Score=36.27 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=62.4
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||=.|+ | .|..+..+++.. +.++++++.+++-.+.+++..... ..+.. +..+ + ....+.+|+++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~--~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFD--EAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCC--EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 47899999997 4 588888888886 678999999998888776433222 12211 1100 0 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.-. ...+....+.|+++|.+++...
T Consensus 234 d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 234 DNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred ECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 4322 1367788899999999987653
No 370
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.64 E-value=4 Score=35.99 Aligned_cols=93 Identities=17% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l-----~~~~~~~D~i~ 180 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.. .. .++..+- ... ....+.+|+++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lG-a~--~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLG-FD--VAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CC--EEEeccccccHHHHHHHhCCCCeEEEE
Confidence 47889998884 3588888888886 678999999998888886532 21 1121111 010 11223589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-.. .. ..+....++|+++|.++...
T Consensus 213 d~~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 213 DNV-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 432 11 24578889999999998764
No 371
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=85.39 E-value=19 Score=32.24 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--------C-CCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--------~-~~~~~~D 177 (290)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++.. .. .++..+-... . .....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g-~~--~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFG-AD--ATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcC-CC--eEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3678888888764 66777777876 55 8999999888877776432 11 1111111000 0 1223589
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+++-...- ...+....+.|+++|+++....
T Consensus 252 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASGH------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence 98853211 2356778899999999987653
No 372
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=85.39 E-value=4.6 Score=35.81 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++.+||..|+|. |..+..+++..+...+++++.++...+.+++... . .++...-.++ ....+.+|+++.
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-T--DIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-c--EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 3678888888763 7777888887632478888888877777665421 1 1111111110 012245998885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...- ...+....+.|+++|.++...
T Consensus 243 ~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3211 246788889999999988654
No 373
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.20 E-value=16 Score=33.50 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred EEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------------CCceEEE-cCCCCCCCCCCCccE
Q 022929 113 LVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVE-GDAEDLPFPTDYADR 178 (290)
Q Consensus 113 ~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~v~~~~-~d~~~l~~~~~~~D~ 178 (290)
+|-=||.|. |.-...+... +.+|+++|++++.++.+.+.... .+..+.. .|..+ . ....|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~--~-~~~ad~ 76 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE--A-YRDADY 76 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh--h-hcCCCE
Confidence 456678884 5433334333 57899999999999888763211 1112211 11111 0 123687
Q ss_pred EEecCccc-c----cCC---HHHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 179 YVSAGSIE-Y----WPD---PQRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 179 i~~~~~l~-~----~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
|+..-.-. . ..+ .++.++.+.+ +++|..+++.+...+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 77542211 0 112 2356677777 6777766666555543
No 374
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=85.14 E-value=2.1 Score=37.43 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEE
Q 022929 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (290)
Q Consensus 174 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 250 (290)
+.||+|+......|.-.+. +..+++|+|.|++...-.-.....+.... -.+.+.++++++||+.+.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 4699998765554443333 77889999999988642211000011111 146888999999997543
No 375
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.13 E-value=4.7 Score=36.37 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC--CC----C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--ED----L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~--~~----l-~~~~~~~D~i~ 180 (290)
.++.+||=+|+|. |..+..+++..+..+|+++|.+++-.+.+++... .. ++...- .+ + ....+.+|+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga-~~--~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA-TD--FINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-Cc--EeccccccchHHHHHHHHhCCCCCEEE
Confidence 4788999999874 6677777887643479999999998888865321 11 111100 00 0 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECTG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECCC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 4321 1 24667788889885 99887654
No 376
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.10 E-value=4.6 Score=35.76 Aligned_cols=94 Identities=22% Similarity=0.335 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC----C--CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L--PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~----l--~~~~~~~D~i~~ 181 (290)
.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.. .. +++...-.+ + ...+..+|+++.
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~~--~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-AD--DTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-CC--EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 3778999998874 77888888886 688999988888888776432 11 111111011 0 022345899986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...- ...+..+.+.|+++|.++...
T Consensus 234 ~~g~------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATGN------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 5211 245778889999999988654
No 377
>PRK11524 putative methyltransferase; Provisional
Probab=85.08 E-value=0.84 Score=39.86 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=36.6
Q ss_pred CceEEEcCCCCC--CCCCCCccEEEec--Ccc--c---c---c------CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 158 ECKIVEGDAEDL--PFPTDYADRYVSA--GSI--E---Y---W------PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 158 ~v~~~~~d~~~l--~~~~~~~D~i~~~--~~l--~---~---~------~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+..++++|+.+. .+++++||+|++. +.. . . + .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446777887553 3566789999983 211 0 0 0 001368899999999999998863
No 378
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=84.71 E-value=4.9 Score=36.27 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCC-CC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAE-DL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~-~l-----~~~~~~~D~i~ 180 (290)
+++.+||=+|+|. |..+..+++..+..+++++|.+++-++.+++... . .++.. +.. ++ ....+.+|+|+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA-T--DCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-C--EEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 4788999999874 6777777887643379999999999888875321 1 11211 100 00 01123589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.|+++ |.+++...
T Consensus 262 d~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 262 ECIG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ECCC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 5321 1 24667788899887 98887654
No 379
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=84.55 E-value=2.3 Score=34.47 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=49.1
Q ss_pred CEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC------CCceEEEcCCCCCC---------CCCCCc
Q 022929 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLP---------FPTDYA 176 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~v~~~~~d~~~l~---------~~~~~~ 176 (290)
..|+.+|||--.....+....++.+++-+|. +++++.-++.... .+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 4899999998888777777655678888888 6666555444221 23567888987521 333445
Q ss_pred cEEEecCcccccCCH
Q 022929 177 DRYVSAGSIEYWPDP 191 (290)
Q Consensus 177 D~i~~~~~l~~~~~~ 191 (290)
-++++-.++.|++..
T Consensus 159 tl~i~Egvl~Yl~~~ 173 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPE 173 (183)
T ss_dssp EEEEEESSGGGS-HH
T ss_pred eEEEEcchhhcCCHH
Confidence 688888888888753
No 380
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.44 E-value=8 Score=34.45 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC-------C---------CCceEEEcCCCCCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L---------KECKIVEGDAEDLPFP 172 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~---------~~v~~~~~d~~~l~~~ 172 (290)
-.+|.=||+|. | .++..++.. +.+|+..|.+++.++.+++... . .++++. .|+.+ ..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~-av- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA-CV- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH-Hh-
Confidence 36788999985 3 455555555 8999999999988776554211 0 011111 11111 01
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEE
Q 022929 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 173 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
...|+|+-+ +.+.+.-.+.+++++.+.++|+..|.
T Consensus 82 -~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 82 -ADADFIQES-APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred -cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 236777743 44434444578899999999987443
No 381
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.31 E-value=14 Score=32.80 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=58.9
Q ss_pred CEEEEEcC--ccchhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEecC
Q 022929 112 MLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSAG 183 (290)
Q Consensus 112 ~~vLDiG~--G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~~ 183 (290)
.+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++...... ++..+-.++ ...++.+|+|+-..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA--AINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE--EEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 78998886 4688888888886 55 79999999888887765433221 222111111 01124599988532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. . ..+....+.|+++|.++...
T Consensus 233 g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C-----c--HHHHHHHHHhccCCEEEEEe
Confidence 2 1 23577889999999998754
No 382
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.23 E-value=5.5 Score=34.23 Aligned_cols=123 Identities=19% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
++..-+|+|+-.|.++-.+.++ +-.|++||--+ | |........++....|-....-.....|-.+|..| .
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~-m---a~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----E 280 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGP-M---AQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----E 280 (358)
T ss_pred CCceeeecccCCCccchhhhhc--ceEEEEeccch-h---hhhhhcccceeeeeccCcccccCCCCCceEEeehh----c
Confidence 7899999999999999999998 78999999743 3 23333445688888888776434556998888765 3
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
.|.++-..+..+|..|=.--.+ ..-..++.+-+..... .++.+.+.+.+.|+.
T Consensus 281 kP~rv~~li~~Wl~nGwCre~I--fNLKLPMKkRy~Ev~~---~L~~~~~~l~~~g~~ 333 (358)
T COG2933 281 KPARVAALIAKWLVNGWCRETI--FNLKLPMKKRYEEVRL---CLARLEEQLDEHGIN 333 (358)
T ss_pred CcHHHHHHHHHHHHcchHHHHH--HhccCchHHHHHHHHH---HHHHHHHHHHhcCCc
Confidence 4666767777777544110000 0001112222222221 456777888888986
No 383
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.10 E-value=11 Score=30.58 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=60.2
Q ss_pred EEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCC-----------ceE-EEcCCCCCCCCCCC
Q 022929 113 LVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE-----------CKI-VEGDAEDLPFPTDY 175 (290)
Q Consensus 113 ~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-----------v~~-~~~d~~~l~~~~~~ 175 (290)
+|-=||.|. |. .+..+++. +.+|+|+|++++.++...+-.. .++ -.+ ...|...- -..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh---hhc
Confidence 566788885 53 33444454 7899999999998887764311 111 011 11222110 123
Q ss_pred ccEEEecCcccc----cCC---HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCC
Q 022929 176 ADRYVSAGSIEY----WPD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (290)
Q Consensus 176 ~D~i~~~~~l~~----~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 245 (290)
.|+++..--... .+| ..+.++.+...++++-.+++.+...+.. +.+.+..++++.+
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt--------------t~~~~~~ile~~~ 139 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT--------------TEELLKPILEKRS 139 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH--------------HHHHHHHHHHHHC
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee--------------ehHhhhhhhhhhc
Confidence 677665321111 112 3578899999999977777776666543 3335566777655
No 384
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=83.95 E-value=14 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=53.8
Q ss_pred CccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 175 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
-.|+|+.-+.-.. .+....|-.+.+.|..+|.+.+.+|..... .+.++.++.+....+|+.......+
T Consensus 45 vvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~gr~-----------g~V~~~~I~eaA~taGL~~t~~~~v 112 (127)
T PF11253_consen 45 VVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAGRP-----------GHVEPSDIREAAPTAGLVQTKSCAV 112 (127)
T ss_pred cccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------CCCCHHHHHHHHhhcCCeeeeeecc
Confidence 4888876433221 244567778889999999999998765431 2347789999999999998888888
Q ss_pred Ccccc
Q 022929 255 GPKWY 259 (290)
Q Consensus 255 ~~~~~ 259 (290)
+..|.
T Consensus 113 ~~dWs 117 (127)
T PF11253_consen 113 GDDWS 117 (127)
T ss_pred CCCcc
Confidence 87764
No 385
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.93 E-value=10 Score=37.84 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=81.6
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|.-||+|+ | .++..++.. +..|+.+|.+++.++.+.++.. . .++++ ..|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-
Confidence 5799999998 3 455555555 8999999999999887654311 0 11221 223322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh--------
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-------- 229 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~-------- 229 (290)
+ ...|+|+= .+.+.+.-.+++++++.++++|+..|.-.+...+...+... +...+.
T Consensus 390 -~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 390 -F--ERVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred -h--cCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 1 23787773 35555555668999999999999877654433322111111 111000
Q ss_pred -cCC---CHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 -LFP---KEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 -~~~---~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
... +.+...++++..|...+.+.+.+
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 495 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCP 495 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcC
Confidence 001 24667788899999988886544
No 386
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.91 E-value=5.1 Score=35.47 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC---CCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~---~~~~~~D~i~~~~~ 184 (290)
.++.+||=.|+|. |..+..+++.. +.+++.++.+++-.+.+++... . .++...-.++. .....+|+++....
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~~g 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-H--HYIDTSKEDVAEALQELGGAKLILATAP 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-c--EEecCCCccHHHHHHhcCCCCEEEECCC
Confidence 3678999999764 77777778876 5789999999888888865321 1 11111111100 00124888885311
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....+....+.|+++|.++....
T Consensus 238 ------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 ------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ------chHHHHHHHHHcccCCEEEEEec
Confidence 12467778899999999987643
No 387
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.89 E-value=19 Score=31.95 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-------C--CCCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------L--PFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-------l--~~~~~~~D 177 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++. ... .++..+-.. + ......+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~--~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-GAT--HTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCc--EEeccccccchhHHHHHHHHhCCCCCC
Confidence 3788888888875 77888888886 455 89998888887777553 211 111111111 0 12334599
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+|+-...- ...+....+.|+++|.++...
T Consensus 237 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 99854321 236778899999999988764
No 388
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.89 E-value=2 Score=32.90 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=44.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
++.++|=||+|- |......+...+..+++.+.-+.+-.+...+.....++++... .++.-.-..+|+|+......+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~--~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL--EDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG--GGHCHHHHTESEEEE-SSTTST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH--HHHHHHHhhCCeEEEecCCCCc
Confidence 689999999984 4433333333344669999998775555444443334444443 3332112349999987655443
No 389
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.84 E-value=2.3 Score=33.20 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.5
Q ss_pred EEcCccc--hhHHHHH--hhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 116 DVGGGTG--FTTLGIV--KHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 116 DiG~G~G--~~~~~l~--~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
|||++.| .....+. ...+..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 345678999999999988887766
No 390
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.23 E-value=20 Score=31.36 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~ 181 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++-.+.+++.. .. .++..+-.++ ......+|+|+-
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~G-a~--~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELG-FD--AVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CC--EEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 37889988874 4578888888886 678999999998888887632 21 1222111111 112245898884
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
... ...+....+.|+++|.++...
T Consensus 218 ~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 321 145688899999999998754
No 391
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=83.14 E-value=5.3 Score=36.33 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHH-HHHHhhhCCCCCceEEEc-CCCCC-CCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIVEG-DAEDL-PFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~v~~~~~-d~~~l-~~~~~~~D~i~~~~~l 185 (290)
++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++. ... .++.. +...+ ... +.+|+++-...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l-Ga~--~~i~~~~~~~v~~~~-~~~D~vid~~G- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL-GAD--SFLVTTDSQKMKEAV-GTMDFIIDTVS- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC-CCc--EEEcCcCHHHHHHhh-CCCcEEEECCC-
Confidence 678899899875 77778888886 5789999887654 4555432 111 11111 10000 011 23888875321
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+....+.++++|.++....
T Consensus 252 ----~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----A-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----c-HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 2356778889999999987653
No 392
>PRK10083 putative oxidoreductase; Provisional
Probab=82.71 E-value=9 Score=33.87 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhh-CCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCCC-CCCCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAE-DLPFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~~-~l~~~~~~~D~i~~~~~ 184 (290)
.++.+||=.|+|. |..+..+++. .+...++++|.+++..+.+++... .. +.....+.. .+.-....+|+++....
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-DWVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-cEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 3788999999764 5666666664 344468889999988888875432 11 010011110 01101112557664321
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ...+....+.|+++|.++....
T Consensus 238 -----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 -----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2357788899999999988654
No 393
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.45 E-value=16 Score=36.37 Aligned_cols=138 Identities=17% Similarity=0.019 Sum_probs=81.2
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAED 168 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~ 168 (290)
-.+|.-||+|+ | .++..++.. .+..|+.+|.+++.++.+.++.. . .++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36899999997 3 455555523 27899999999998888754321 0 112221 22221
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH------------HHhh-------
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM------- 229 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~------------~~~~------- 229 (290)
+ ...|+|+=. +.+.+.-.++++.++.++++|+..|.-.+...+...+..... ..+.
T Consensus 387 --~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred --h--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 2 237887733 555555566899999999999988865443333221111111 0000
Q ss_pred --cCC---CHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 --LFP---KEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 --~~~---~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
... +.+...+++++.|...+.+.+.+
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 001 24566788888999888776543
No 394
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.40 E-value=7.8 Score=34.91 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-C-CC-----CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-E-DL-----PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~-~l-----~~~~~~~D~i~ 180 (290)
.++.+||=.|+|. |..+..+++..+..+++++|.+++..+.+++... . .++..+- . .+ ....+.+|+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV-T--EFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4789999999874 6777778887643489999999999888876422 1 1121110 0 00 01122588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 213 (290)
-... . ...+....+.++++ |.+++...
T Consensus 263 d~~G-----~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECTG-----N-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECCC-----C-hHHHHHHHHHhhcCCCEEEEECc
Confidence 4321 1 24566778888996 99887654
No 395
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.16 E-value=7.7 Score=34.58 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~ 180 (290)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++... . .++...-.++ ......+|+++
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga-~--~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGA-T--IVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 3678888888763 66777777776 45 89999999988888865321 1 1111110110 01223489998
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-.... ...++.+.+.|+++|.++....
T Consensus 247 d~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 54221 2357788899999999987654
No 396
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.98 E-value=8 Score=34.24 Aligned_cols=94 Identities=23% Similarity=0.339 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCC---CC-C-CCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAE---DL-P-FPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~---~l-~-~~~~~~D~i~~ 181 (290)
.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++... . .++..+-. .+ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 3678899998775 77777788876 555 9999988888777754321 1 12211100 00 1 12234899985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. .....+..+.+.|+++|.++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346778899999999988765
No 397
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.72 E-value=22 Score=27.40 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++.+|+-+|||. | ..+..+++. +...++.+|.+++..+...+......+.....|..+. -+.+|+|++.-...
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCCEEEeCcCCC
Confidence 568999999974 2 233333333 2367999999987665544332211111122232221 23489999864443
No 398
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.37 E-value=18 Score=31.77 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
.++.+||=.|||. |..+..+++.. +.+++.++.+++..+.+++. . +.... +.... .++.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~-g---~~~~~-~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL-G---ADWAG-DSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh-C---CcEEe-ccCcc--CCCcccEEEEcCC---
Confidence 3677888888774 55666666765 68999999888887777542 2 11111 11111 2345888774321
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
....++.+.+.|+++|.++....
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEEcC
Confidence 12468889999999999987653
No 399
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.34 E-value=2.4 Score=33.04 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC-CCC---CCCCccEEEecCccc
Q 022929 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPF---PTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~-l~~---~~~~~D~i~~~~~l~ 186 (290)
..-|||+|=|+|..--++.+.+|+.+++.+|-.-..-.. .. .+.-.++.+|+.+ ++. ...+.-++.+....+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~---~~-P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS---ST-PPEEDLILGDIRETLPALARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG---G----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC---CC-CchHheeeccHHHHhHHHHhcCCceEEEEeecCCC
Confidence 366999999999999999999999999999973221111 11 1223467777633 221 111222332222222
Q ss_pred ccCCHH----HHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQ----RGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~----~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+-.+.. .+-.-+..+|.|||.++-..+
T Consensus 105 ~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 105 DKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 111111 233456688899998865433
No 400
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.33 E-value=11 Score=34.91 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+++|+=+|+|. |......++.. +.+|+.+|.++.....+... +.+. .++.+. . ..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v--~~l~ea-l--~~aDVVI~aT----- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRV--MTMEEA-A--ELGDIFVTAT----- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEe--cCHHHH-H--hCCCEEEECC-----
Confidence 789999999996 55555555555 67999999988655444321 2221 122221 1 2489998643
Q ss_pred CCHHHHHH-HHHhccCCCCEEEEEccCC
Q 022929 189 PDPQRGIR-EAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 189 ~~~~~~l~-~~~~~L~pgG~l~i~~~~~ 215 (290)
.+. .++. .....+|+|+.++......
T Consensus 276 G~~-~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GNK-DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCH-HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 222 3444 6888999999998776543
No 401
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=81.05 E-value=15 Score=33.36 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc------CC----CCCCCCCCCcc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG------DA----EDLPFPTDYAD 177 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~------d~----~~l~~~~~~~D 177 (290)
.++.+||=.|+|. |..+..+++..+..++++++.+++..+.+++... .. ++.. +. ..+ .....+|
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~-~~--~v~~~~~~~~~~~~~v~~~-~~g~gvD 277 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA-DY--VFNPTKMRDCLSGEKVMEV-TKGWGAD 277 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-CE--EEcccccccccHHHHHHHh-cCCCCCC
Confidence 3678888888874 6667777777643379999998887766665321 11 1111 10 011 2234589
Q ss_pred EEEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
+|+... ......+....+.|+++|.++....
T Consensus 278 vvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 278 IQVEAA-----GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EEEECC-----CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 888542 2234567788899999999987643
No 402
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.93 E-value=11 Score=37.65 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=82.5
Q ss_pred CCEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCC
Q 022929 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAED 168 (290)
Q Consensus 111 ~~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~ 168 (290)
-.+|.-||+|+ | .++..++.. +..|+.+|.+++.++.++++.. . .+++. ..|...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYAG 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH
Confidence 35789999997 3 455555555 8999999999999887765421 0 11211 122211
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh-------
Q 022929 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM------- 229 (290)
Q Consensus 169 l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~------- 229 (290)
+ ...|+|+= .+.+.+.-.+++++++..+++|+..|.-.+...+...+... ++..+.
T Consensus 390 --~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv 464 (714)
T TIGR02437 390 --F--DNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVI 464 (714)
T ss_pred --h--cCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeec
Confidence 2 23788873 36666666678999999999999887654433322111111 100000
Q ss_pred --cC---CCHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 --LF---PKEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 --~~---~~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
.. -+.+...+++++.|...+.+.+.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 00 124566788889999888876543
No 403
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.85 E-value=15 Score=30.60 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=61.2
Q ss_pred hccccCCCCCCCEEEEEcCccc----hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCCceEEEcCC-CC-CC
Q 022929 101 ALEPADLSNRNMLVVDVGGGTG----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA-ED-LP 170 (290)
Q Consensus 101 ~l~~~~~~~~~~~vLDiG~G~G----~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~v~~~~~d~-~~-l~ 170 (290)
+++.+....+...|+++.|+-| .+++..+.+.-+.++++|-++++.+...++... .+.++|+.++. ++ ++
T Consensus 32 fISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 32 FISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred HHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHh
Confidence 3444333345678999966543 344555555567899999888776655554432 23468888875 32 22
Q ss_pred CCCCCccEEEecCcccccCCHH-HHHHHHHhccCCCCEEEEEccC
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.- ..+|.++...-. .+.. ++|+.+. +.|.|-+++....
T Consensus 112 ~~-~~iDF~vVDc~~---~d~~~~vl~~~~--~~~~GaVVV~~Na 150 (218)
T PF07279_consen 112 GL-KGIDFVVVDCKR---EDFAARVLRAAK--LSPRGAVVVCYNA 150 (218)
T ss_pred hc-cCCCEEEEeCCc---hhHHHHHHHHhc--cCCCceEEEEecc
Confidence 22 348888754332 2323 3444322 4456777776544
No 404
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.84 E-value=25 Score=31.59 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
.++.+||-.|+|. |..+..+++..+...++++|.+++..+.+++... . .++..+-.++ ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 3678899888875 7777778888744479999999988887765321 1 1121111110 0113458988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
..- ...+..+.+.|+++|.++....
T Consensus 262 ~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 211 2357788999999999987653
No 405
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.82 E-value=27 Score=28.83 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhC-CCCCceEEEcCCCCCC-C---------CCCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP-F---------PTDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~-~~~~v~~~~~d~~~l~-~---------~~~~~ 176 (290)
++++||-.|++. .++..+++.+ .+.+|++++-+++..+...+.. ...++.++..|+.+.. . .-+.+
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999764 3333333322 2689999999887665543221 1235778888886532 0 01246
Q ss_pred cEEEecCcccccC---C--------------HHHHHHHHHhccCCCCEEEEEcc
Q 022929 177 DRYVSAGSIEYWP---D--------------PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 177 D~i~~~~~l~~~~---~--------------~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|.++......... + .-.+++.+...++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8877654322111 1 11235556666777887777653
No 406
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=80.77 E-value=27 Score=27.80 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=59.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---CC--CCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---LP--FPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l~--~~~~~~D~i~~~~~ 184 (290)
.+.+|+-|||=+-.....- ...+..+++..|++...-.... + +|..-|... +| + .++||+|++.--
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~------~-~F~fyD~~~p~~~~~~l-~~~~d~vv~DPP 95 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGG------D-EFVFYDYNEPEELPEEL-KGKFDVVVIDPP 95 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCC------c-ceEECCCCChhhhhhhc-CCCceEEEECCC
Confidence 5689999999774443322 1335789999999877644222 2 466666643 22 3 457999998544
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
+-..+-..+..+.+..++++++.+++.+
T Consensus 96 Fl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 96 FLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4211112356677777778999998874
No 407
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.61 E-value=18 Score=30.56 Aligned_cols=73 Identities=12% Similarity=-0.010 Sum_probs=45.7
Q ss_pred CEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CC------CCCccE
Q 022929 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP------TDYADR 178 (290)
Q Consensus 112 ~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~------~~~~D~ 178 (290)
+++|-.|++. .++..+++.+ .+.+|+.++.+++.++...+.....++.++..|+.+.. +. .+++|+
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 4577777654 4443333321 26899999998887766655443346788899986532 00 345899
Q ss_pred EEecCcc
Q 022929 179 YVSAGSI 185 (290)
Q Consensus 179 i~~~~~l 185 (290)
++.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 8875443
No 408
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.57 E-value=11 Score=33.35 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc----CCCC-C-CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED-L-PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~----d~~~-l-~~~~~~~D~i~ 180 (290)
.++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++...... ++.. +..+ + ......+|+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDD--AFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCce--eEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 47899999886 3578888888886 6789999988988888876333221 1211 1100 0 01124589888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-... ...+....+.|+++|.++...
T Consensus 227 d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 227 DNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 4321 146778899999999998764
No 409
>PLN02494 adenosylhomocysteinase
Probab=80.56 E-value=8.1 Score=36.24 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHhhccccCCCCCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCC
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~ 175 (290)
..+.+++.....-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... +..+. ++.+. . ..
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa-l--~~ 309 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV-V--SE 309 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH-H--hh
Confidence 3444444433333789999999997 65555555555 67999999988654444322 11211 22221 1 23
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.|+|+.... +..-+..+....+|+|+.++-....
T Consensus 310 ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 310 ADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCCC
Confidence 799986322 2222347788899999999887653
No 410
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=80.52 E-value=12 Score=33.20 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCC-ceEEEcCC----CCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDA----EDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-v~~~~~d~----~~l~~~~~~~D~i~~~~ 183 (290)
++.+||=.|+|. |..+..+++..+..++++++.++.....+++... .. +.....+. ..+ .....+|+++...
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~ 243 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-THTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-CceeccccccHHHHHHHH-hCCCCCCEEEECC
Confidence 677877788764 6666777777643788999998887777765321 11 11111111 011 1234599988532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ...+..+.+.|+++|.++...
T Consensus 244 -----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 -----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred -----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 235788889999999998754
No 411
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=79.52 E-value=8.3 Score=34.98 Aligned_cols=103 Identities=21% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCCCC--------------
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP-------------- 170 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~l~-------------- 170 (290)
.+.+.+|.+|+.+.....+++.++..+--|+++..+.+..+...... ...++..+|....+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 45799999999999999999998777788899999988888755332 12333444332211
Q ss_pred ---------------CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 171 ---------------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 171 ---------------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
++...+|. ..+..|+++...++......++++|.+++.+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcC
Confidence 11112222 3445566666678899999999999999876554
No 412
>PLN00203 glutamyl-tRNA reductase
Probab=79.32 E-value=7.1 Score=37.24 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~ 183 (290)
.+.+|+=||+|. |......+...+..+++.++.+.+..+...+... +......++.++.-.-...|+|++..
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEcc
Confidence 468999999975 4443333333333579999999877665554432 22222222222211113489998754
No 413
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.99 E-value=11 Score=33.08 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+.+|+=+|+|. |..+...++.. +.+|+.+|.+++..+.++.. +..+.. ..++.-.-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~----G~~~~~--~~~l~~~l~~aDiVI~t~----- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM----GLSPFH--LSELAEEVGKIDIIFNTI----- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----CCeeec--HHHHHHHhCCCCEEEECC-----
Confidence 578999999985 55555555555 57999999998877766642 222221 111111112489999752
Q ss_pred CCHHHHHHHHHhccCCCCEEEEE
Q 022929 189 PDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
+. .-+-++....++|++.++-.
T Consensus 219 p~-~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 219 PA-LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred Ch-hhhhHHHHHcCCCCcEEEEE
Confidence 11 12345667788998877644
No 414
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.13 E-value=4.9 Score=35.55 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred ccCCCCCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-------CCCCCC
Q 022929 104 PADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-------PFPTDY 175 (290)
Q Consensus 104 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-------~~~~~~ 175 (290)
..... ++++|--+|.| -|.++..+++.. +.+|+++|-+..--+.+-+.+.... |+. ..++- ...+.-
T Consensus 176 ~~g~~-pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~--fv~-~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 176 RSGLG-PGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADV--FVD-STEDPDIMKAIMKTTDGG 250 (360)
T ss_pred HcCCC-CCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcce--eEE-ecCCHHHHHHHHHhhcCc
Confidence 33444 78888777765 699999999998 7899999999877676766554332 221 11110 011222
Q ss_pred ccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 176 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
.|.+.+. .+..+..+..+||++|.+++.....
T Consensus 251 ~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 251 IDTVSNL--------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ceeeeec--------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 4444322 1234677889999999999876544
No 415
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=77.42 E-value=18 Score=36.19 Aligned_cols=136 Identities=16% Similarity=0.044 Sum_probs=80.8
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|--||+|+ | .++..++.. +..|+.+|.+++.++.+.++.. . .++++ ..|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP-TLDYSG- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 5799999996 3 344555555 8999999999999888765421 0 11221 123322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhh------------hHHHhh--------
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-------- 229 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------------~~~~~~-------- 229 (290)
+ ...|+|+ -.+.+.+.-.+++++++..+++|+..|.-.+...+...+... +...+.
T Consensus 412 -~--~~aDlVi-EAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 412 -F--KNADMVI-EAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred -h--ccCCeeh-hhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 2 2378777 335555555668999999999999888665443332211111 111000
Q ss_pred -cCC---CHHHHHHHHHHCCCcEEEEEEcC
Q 022929 230 -LFP---KEEEYIEWFQKAGFKDVQLKRIG 255 (290)
Q Consensus 230 -~~~---~~~~~~~ll~~aGf~~v~~~~~~ 255 (290)
... +.+...+++++.|...+.+.+.+
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 517 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGP 517 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcC
Confidence 001 24556778888898887775543
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.41 E-value=24 Score=30.53 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=53.7
Q ss_pred CEEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhC--------CCC------------CceEEEcCCCCC
Q 022929 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLK------------ECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~------------~v~~~~~d~~~l 169 (290)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.++++. ... ++. ...|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH-
Confidence 3577889985 4455555555 679999999999886544210 000 111 1223222
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEE
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 210 (290)
. +..|+|+.. +.....-.+.+++++.+.++|+..+.-
T Consensus 80 -~--~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 80 -L--KDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred -h--ccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 337888753 222222234789999999998877733
No 417
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=77.34 E-value=39 Score=29.95 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEecC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~~ 183 (290)
++.+||-.|+|. |..+..+++..+...+++++.+++..+.+++... . .++...-... ....+.+|+++...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGA-D--VVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCC-c--EEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 678888888874 7777777887643478999998888887754321 1 1111111010 01112588888532
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. . ...+....+.|+++|.++....
T Consensus 252 g-----~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 252 N-----N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred C-----C-HHHHHHHHHHhhcCCeEEEECC
Confidence 2 1 2467888999999999987643
No 418
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.01 E-value=38 Score=29.67 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=63.7
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|-=||+|. | .++..+++. +.++++.|.+++..+.+.+. ++.. ..+..++.-.....|+|+..- ..-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~~-~~~~~e~~~~~~~~dvvi~~v--~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE----GATG-ADSLEELVAKLPAPRVVWLMV--PAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----CCee-cCCHHHHHhhcCCCCEEEEEe--cCCcH
Confidence 466688886 3 355666655 67899999999887776542 2221 112211110001247776531 11112
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 252 (290)
...++..+...+++|..++-.....+. +..++.+.+++.|...++.-
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYK---------------DDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChh---------------HHHHHHHHHHHcCCEEEeCC
Confidence 345667788888887544433322221 23456677788887766543
No 419
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.92 E-value=25 Score=35.03 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=79.1
Q ss_pred CEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|.-||+|+ |. ++..++.. .+..|+.+|.+++.++.+.++.. . .++++ ..|+..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~- 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK-AGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG-TTDYRG- 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE-eCChHH-
Confidence 5799999997 33 33344422 27899999999998887754321 0 12221 223322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhH------------HHhh--------
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM-------- 229 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~------------~~~~-------- 229 (290)
+ ...|+|+= .+.+.+.-.++++.++..+++|+..|.-.+...+...+..... ..+.
T Consensus 382 -~--~~adlViE-av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~ 457 (699)
T TIGR02440 382 -F--KDVDIVIE-AVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457 (699)
T ss_pred -h--ccCCEEEE-eccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeC
Confidence 2 23788773 3455555556899999999999987765443332221111111 1100
Q ss_pred -cCC---CHHHHHHHHHHCCCcEEEEEEc
Q 022929 230 -LFP---KEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 230 -~~~---~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
... +.+...++++..|...+.+.+.
T Consensus 458 g~~T~~~~~~~~~~~~~~~gk~pv~v~d~ 486 (699)
T TIGR02440 458 HAGTSEQTIATTVALAKKQGKTPIVVADK 486 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEccc
Confidence 001 2456678889999998888654
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.72 E-value=30 Score=29.31 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCCEEEEEcCccch---hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC-----CC-----CCCc
Q 022929 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~---~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~-----~~-----~~~~ 176 (290)
.++++|-.|++.|. ++..+++. +.+|+.+|.+++..+...+.. ..++.++..|+.+.. +. -+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL-GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45788888865432 33334443 689999999877555444333 235778888886532 00 1358
Q ss_pred cEEEecCc
Q 022929 177 DRYVSAGS 184 (290)
Q Consensus 177 D~i~~~~~ 184 (290)
|+++.+..
T Consensus 82 d~lv~~ag 89 (261)
T PRK08265 82 DILVNLAC 89 (261)
T ss_pred CEEEECCC
Confidence 98887543
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.52 E-value=6.8 Score=30.95 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=66.1
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|-=||+|. | .++..|++. +..+++.|.+++..+...+.. ++ ...+..++ . ...|+|++. +++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~g----~~-~~~s~~e~--~-~~~dvvi~~-----v~~ 67 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEAG----AE-VADSPAEA--A-EQADVVILC-----VPD 67 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHTT----EE-EESSHHHH--H-HHBSEEEE------SSS
T ss_pred EEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHhh----hh-hhhhhhhH--h-hcccceEee-----ccc
Confidence 456678875 2 355555555 789999999998888776542 11 22222221 1 235888753 344
Q ss_pred H---HHHHHH--HHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEcCc
Q 022929 191 P---QRGIRE--AYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (290)
Q Consensus 191 ~---~~~l~~--~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 256 (290)
. +.++.. +...|++|..++-.+...+. +..++.+.+++.|...++.--.+.
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~---------------~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPE---------------TSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH---------------HHHHHHHHHHHTTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchh---------------hhhhhhhhhhhccceeeeeeeecc
Confidence 3 355565 66777776666544433322 356788888999988888776653
No 422
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=76.46 E-value=44 Score=31.79 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=62.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC----CCeEEEEeCCHHHHHHHhhhCCC-----CCceEEEcCCCC-CCC-CCCCccE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAED-LPF-PTDYADR 178 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~-----~~v~~~~~d~~~-l~~-~~~~~D~ 178 (290)
++..|.|.-||+|.++....+... ...++|.+....+...++.+... .......+|-.. ... ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 557899999999999876544321 25689999999999988876211 112222333322 111 2345788
Q ss_pred EEecCcc---------------------cccC---C-HHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSI---------------------EYWP---D-PQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l---------------------~~~~---~-~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
|+++--. |.++ + -..++..+...|++||...++-+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 7763211 1011 1 12577788889999998666543
No 423
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=76.45 E-value=32 Score=30.30 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=55.8
Q ss_pred CEEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC----CCC-ceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 112 MLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKE-CKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 112 ~~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~-v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.+|+=+|+|. |. ++..|++. +..|+.++-+++.++..++... ..+ ...+...... +-..+.+|+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEECC
Confidence 4689999996 44 55566554 6789999998766665553210 001 0011100111 111246898875321
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
- .+....++.+...+.++..++.....
T Consensus 80 ~---~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 80 A---YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred H---HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 1 12446788889999999887776443
No 424
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.42 E-value=9 Score=35.00 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
++++||-|.+|-...+..+.+. ..+|++||+|+......+
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAG--PKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcC--CceEEEEeCCHHHHHHHH
Confidence 7899999987655555555544 579999999998777665
No 425
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.18 E-value=2.5 Score=40.45 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=59.5
Q ss_pred cCCCCCCCEEEEEcCccchhHHHHHhhCC-CCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC----CC----CCCCC
Q 022929 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----LP----FPTDY 175 (290)
Q Consensus 105 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~----l~----~~~~~ 175 (290)
..+..++..|||+||-+|.++....+..| +.-|+|+|+.+-- ..+++.-++.|+.. .+ +...+
T Consensus 39 y~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 39 YKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred hccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 34455788999999999999999988887 4679999995421 12333344444422 11 22234
Q ss_pred ccEEEecCc---cccc-CCH-------HHHHHHHHhccCCCCEEEE
Q 022929 176 ADRYVSAGS---IEYW-PDP-------QRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 176 ~D~i~~~~~---l~~~-~~~-------~~~l~~~~~~L~pgG~l~i 210 (290)
.|+|+...+ -..| .+. -..++-+...|..||.++-
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 688876332 2222 111 1345566788889999543
No 426
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.48 E-value=20 Score=31.70 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~~ 182 (290)
.++.+||-.|+|. |..+..+++..+..++++++-+++-...+++... . .++..+-.+. ....+.+|+++..
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~vd~vld~ 238 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA-D--VVINPREEDVVEVKSVTDGTGVDVVLEM 238 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCc-c--eeeCcccccHHHHHHHcCCCCCCEEEEC
Confidence 3678888888764 6777778887633378888877777766664321 1 1111111111 0223458999853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-. .......+.+.|+++|.++...
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 239 SG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CC------CHHHHHHHHHHhccCCEEEEEc
Confidence 21 1235677888999999998764
No 427
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=75.38 E-value=46 Score=28.89 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=53.4
Q ss_pred EEEEEcCcc-ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCC-CceEE-E-cCCCCCCCCCCCccEEEecCcccc
Q 022929 113 LVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECKIV-E-GDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 113 ~vLDiG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~v~~~-~-~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+|+=||+|. |. ++..+++. +.+|+.++.+++.++..++..... .-... . .-..+.. ....+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~-- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEeccc--
Confidence 578899986 43 44444444 578999998777766665432100 00000 0 0011111 11458988864322
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.+...+++.+...+.++..++.....
T Consensus 77 -~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 77 -YQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred -ccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 23456888888888877777665443
No 428
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=75.36 E-value=40 Score=33.03 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=58.7
Q ss_pred CCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l 185 (290)
..+|+=+|||. |.......... +.+++.+|.+++.++.+++. +...+.+|..+.. ..-+++|++++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vvv~~-- 472 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF----GMKVFYGDATRMDLLESAGAAKAEVLINAI-- 472 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc----CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--
Confidence 46899999985 66554444442 67899999999999988752 4678999987643 1223578777542
Q ss_pred cccCCHHH--HHHHHHhccCCCCEEEEEc
Q 022929 186 EYWPDPQR--GIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 186 ~~~~~~~~--~l~~~~~~L~pgG~l~i~~ 212 (290)
+|.+. .+-...+.+.|+-.++.-.
T Consensus 473 ---~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 ---DDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 33332 2223444456776665543
No 429
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.32 E-value=7.6 Score=34.36 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc-CCCCCC-------CCCCCccEEE
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLP-------FPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~-d~~~l~-------~~~~~~D~i~ 180 (290)
++.++.-+|+|. |.....-++..+..+++|+|++++-.+.|++... .++++- |..+ | ..++.+|.-+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa---Te~iNp~d~~~-~i~evi~EmTdgGvDysf 267 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA---TEFINPKDLKK-PIQEVIIEMTDGGVDYSF 267 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc---ceecChhhccc-cHHHHHHHHhcCCceEEE
Confidence 678888888886 5555555666667899999999999999997643 223321 3333 2 3345566554
Q ss_pred ecCcccccCCHHHHHHHHHhccCCC-CEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 212 (290)
+.+.+ .+.++++....++| |.-+++.
T Consensus 268 -----Ec~G~-~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 268 -----ECIGN-VSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred -----EecCC-HHHHHHHHHHhhcCCCeEEEEE
Confidence 22222 24667777778888 8766653
No 430
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=75.16 E-value=18 Score=32.47 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEc--CCCC-C-CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG--DAED-L-PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~--d~~~-l-~~~~~~~D~i~~~~ 183 (290)
.++.+||=.|+|. |..+..+++..+...+++++.+++..+.+++.....-+..... +..+ + ....+.+|+++-..
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~ 261 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECC
Confidence 3678888888874 6677777777644458899988888888765321100111111 1100 0 01124589888532
Q ss_pred cccccCCHHHHHHHHHhccC-CCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLK-LGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~ 213 (290)
. . ...+....+.|+ ++|.++....
T Consensus 262 g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 262 G-----S-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred C-----C-HHHHHHHHHHhccCCCEEEEEec
Confidence 1 1 246677888899 9999987643
No 431
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=74.34 E-value=16 Score=33.85 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~ 184 (290)
++.+|+-+|+|. |......+...+..+++.++.+++......+.... .... .|..+ .. ..+|+|++...
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~---~~~~~~~~~~-~l--~~aDvVI~aT~ 251 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG---EAIPLDELPE-AL--AEADIVISSTG 251 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC---cEeeHHHHHH-Hh--ccCCEEEECCC
Confidence 678999999985 55555444444335899999998665433322221 1221 12211 01 24899998644
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.21 E-value=15 Score=33.94 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=69.4
Q ss_pred CCCEEEEEc---Cc----cchhHHHHHhhCCCCeEEEEeCC-HHHHHHHhhhCCCCCceEEEcCCCCCC----------C
Q 022929 110 RNMLVVDVG---GG----TGFTTLGIVKHVDAKNVTILDQS-PHQLAKAKQKEPLKECKIVEGDAEDLP----------F 171 (290)
Q Consensus 110 ~~~~vLDiG---~G----~G~~~~~l~~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~v~~~~~d~~~l~----------~ 171 (290)
++..|+=+| +| .|-++.++.+.....-++++|+- |.+++..+.....-++.|+..+-..-| +
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456787775 33 23455666664223556778875 567777777766567777776444333 2
Q ss_pred CCCCccEEEecCcccccCCH--HHHHHHHHhccCCCCEEEEEccCCC
Q 022929 172 PTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 172 ~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
....+|+|+....-.+.-+. -.-+.++...++|.=.|++.+....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 24569999986554433332 2577888999999999999876543
No 433
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=73.99 E-value=40 Score=29.53 Aligned_cols=117 Identities=11% Similarity=0.022 Sum_probs=63.6
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|-=||+|. | .++..+++. +.+|++.|.+++..+.+.+... .. ..+..++...-...|+|++.-.- - .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g~----~~-~~s~~~~~~~~~~~dvIi~~vp~--~-~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDRT----TG-VANLRELSQRLSAPRVVWVMVPH--G-I 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC----cc-cCCHHHHHhhcCCCCEEEEEcCc--h-H
Confidence 466788886 2 355555554 6789999999988877765311 11 11211111001236888764211 1 2
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+.+++++...|++|-.++-.....+. +..+..+.+++.|...++.-..
T Consensus 72 ~~~v~~~l~~~l~~g~ivid~st~~~~---------------~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVIDGGNSYYK---------------DSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCcc---------------cHHHHHHHHHhcCCeEEecCCC
Confidence 356778888888887544332222111 2344555666777765554433
No 434
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.96 E-value=6.2 Score=32.23 Aligned_cols=88 Identities=19% Similarity=0.097 Sum_probs=57.4
Q ss_pred CCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.++.||-+|.- +|.+...++.. ..+|+.+|+.+.+..... +++.|... +.+..+.+|+|+-...+.-.
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp-----~~v~Fr~~----~~~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP-----NNVKFRNL----LKFIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC-----CCccHhhh----cCCCCCceeEEEeccccCCC
Confidence 67899999987 68777777665 679999999888755544 45666554 23455669999976665543
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEccCC
Q 022929 189 PDPQRGIREAYRVLKLGGKACIIGPVY 215 (290)
Q Consensus 189 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 215 (290)
. | .+| +-+.| +.+++.++..
T Consensus 113 ~-P-e~L----~~fnp-~vfiVEdP~g 132 (254)
T COG4017 113 E-P-EFL----AKFNP-KVFIVEDPKG 132 (254)
T ss_pred C-H-HHH----hccCC-ceEEEECCCC
Confidence 3 1 222 33344 4555666644
No 435
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=73.84 E-value=40 Score=30.17 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC----C--CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED----L--PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~----l--~~~~~~~D~i~~ 181 (290)
.++.+||-.|+| .|..+..+++..+...+++++.+++..+.+++.. .. .++..+-.+ + ......+|+++.
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g-~~--~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG-AT--HTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC-Ce--EEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 367888888886 3777778888764334999998888877775432 11 112111111 0 012345898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...+..+.+.|+++|.++....
T Consensus 258 ~~~-----~-~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 258 AVG-----R-AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred cCC-----C-hHHHHHHHHHhhcCCeEEEEec
Confidence 322 1 2456788899999999987643
No 436
>PRK08324 short chain dehydrogenase; Validated
Probab=73.84 E-value=33 Score=33.94 Aligned_cols=103 Identities=20% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCC-CCceEEEcCCCCCC-----CC-----CCCc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP-----FP-----TDYA 176 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~v~~~~~d~~~l~-----~~-----~~~~ 176 (290)
++++||-.|++. .++..+++.+ .+.+|+.+|.+++..+.+.+.... .++.++..|+.+.. +. .+.+
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 457888888643 3333332221 267999999998776655543221 35778888886532 10 1358
Q ss_pred cEEEecCcccccCC-------------------HHHHHHHHHhccCC---CCEEEEEcc
Q 022929 177 DRYVSAGSIEYWPD-------------------PQRGIREAYRVLKL---GGKACIIGP 213 (290)
Q Consensus 177 D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---gG~l~i~~~ 213 (290)
|+|+.+........ ...+++.+.+.+++ +|.+++...
T Consensus 500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 99987654322111 12345566666665 577776543
No 437
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=73.53 E-value=62 Score=28.56 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=58.4
Q ss_pred CCCEEEEEcCc-cchhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G-~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
++.+||-.|+| .|..+..+++.. +.+ +++++-++...+.+++... . .++...-.++ ....+.+|+++-
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~v~~~~~~~~~~l~~~~~~~~~d~vld 236 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGA-T--YVVNPFKEDVVKEVADLTDGEGVDVFLE 236 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-c--EEEcccccCHHHHHHHhcCCCCCCEEEE
Confidence 67788777776 366777777776 555 8888888877777765421 1 1111110110 122345899986
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... ....+..+.+.|+++|.++....
T Consensus 237 ~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 237 MSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 421 12457788999999999887654
No 438
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.02 E-value=16 Score=31.92 Aligned_cols=90 Identities=21% Similarity=0.111 Sum_probs=52.2
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC-----------C------------CceEEEcCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----------K------------ECKIVEGDA 166 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~------------~v~~~~~d~ 166 (290)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+++.... . ++. ...|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR-TSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE-eeCCH
Confidence 4688899995 4 344555554 67999999999988765442110 0 011 11122
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEE
Q 022929 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 167 ~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
.. . ...|+|+..- .......+.+++++...++++..++
T Consensus 81 ~~--~--~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES--L--SDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH--h--CCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 1 2378887542 2222223567888888888876554
No 439
>PLN02702 L-idonate 5-dehydrogenase
Probab=72.96 E-value=27 Score=31.30 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=59.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE---cCCCC----C-CCCCCCccEEE
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE---GDAED----L-PFPTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~---~d~~~----l-~~~~~~~D~i~ 180 (290)
++.+||-+|+|. |..+..+++..+...++++|.++...+.+++... ..+..+. .+... + ....+.+|+|+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 259 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA-DEIVLVSTNIEDVESEVEEIQKAMGGGIDVSF 259 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-CEEEecCcccccHHHHHHHHhhhcCCCCCEEE
Confidence 678888888763 6777778887644468899998888887765321 1111110 11100 0 01123588888
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
-... . ...+....+.|+++|.++....
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 260 DCVG-----F-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred ECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 5321 1 2367888999999999887653
No 440
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.85 E-value=63 Score=31.15 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=54.0
Q ss_pred CEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCccc
Q 022929 112 MLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIE 186 (290)
Q Consensus 112 ~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l~ 186 (290)
.+|+=+|||. |.......... +.+++.+|.+++.++.+++ .+...+.+|..+.. ..-+++|.++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--- 489 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDCARWLLLTI--- 489 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccccCEEEEEc---
Confidence 6788888885 44333333322 6789999999999988874 25678999987632 1223578665431
Q ss_pred ccCCHH--HHHHHHHhccCCCCEEEEE
Q 022929 187 YWPDPQ--RGIREAYRVLKLGGKACII 211 (290)
Q Consensus 187 ~~~~~~--~~l~~~~~~L~pgG~l~i~ 211 (290)
++.. ..+-...+...|+..++..
T Consensus 490 --~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 490 --PNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred --CChHHHHHHHHHHHHHCCCCeEEEE
Confidence 1211 1222233445677666654
No 441
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=72.74 E-value=63 Score=28.92 Aligned_cols=95 Identities=26% Similarity=0.337 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
.++.+||-.|+| .|..+..+++..+...+++++.+++..+.+++.. .. .++..+-... ...+..+|+|+.
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~~--~v~~~~~~~~~~~l~~~~~~~~~d~vld 262 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-AT--HTVNAAKEDAVAAIREITGGRGVDVVVE 262 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-Cc--eEecCCcccHHHHHHHHhCCCCCCEEEE
Confidence 367788877776 3667777777764333999998888887775432 11 1222111111 112345899885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. .... ..+..+.+.|+++|.++...
T Consensus 263 ~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 263 A-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred e-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 3 2221 25677889999999988764
No 442
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.74 E-value=16 Score=31.95 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=57.8
Q ss_pred CEEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CC------------CceEEEcCCCCC
Q 022929 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LK------------ECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~------------~v~~~~~d~~~l 169 (290)
.+|-=||+|. +.++..++.. +.+|+..|.+++.++.++++.. .. +++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence 4788899996 3455555555 7899999999999888654311 00 111 2233322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhcc-CCCCEEEEEccC
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPV 214 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~ 214 (290)
. ...|+|+-. +.+...-.+.++..+..++ +|+..+.-.+..
T Consensus 82 -~--~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 -F--ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred -h--CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 237888743 3443333457888888888 677666554433
No 443
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=72.62 E-value=20 Score=31.71 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=59.4
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~~ 182 (290)
++.+||-.|+|. |..+..+++..+..++++++.+++..+.+++... . .++..+-.++ ....+.+|+|+..
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-~--~~~~~~~~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-T--RAVNVAKEDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-c--EEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence 678888788765 6777778877633368888888887777665321 1 1111110110 0123458988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. ....+..+.+.|+++|.++....
T Consensus 240 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 240 SG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 22 13467788899999999988754
No 444
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=72.55 E-value=26 Score=25.24 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHCCCcEEEEEEcCcccc
Q 022929 233 KEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (290)
Q Consensus 233 ~~~~~~~ll~~aGf~~v~~~~~~~~~~ 259 (290)
..+++.+.++++||++.+.+.+...+|
T Consensus 62 ~e~~l~~~l~~~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 62 REEDLRRALAAAGWRIGRTERISSGFY 88 (97)
T ss_pred CHHHHHHHHHhCCCeeeecccccCcCh
Confidence 578999999999999999988876665
No 445
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.28 E-value=11 Score=33.97 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=38.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEE---EeCCHHHHHHHhhhCCC--CCceEEEcCCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTI---LDQSPHQLAKAKQKEPL--KECKIVEGDAEDL 169 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~---vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l 169 (290)
++..++|+|||-|.++..++..++...++- +|-...-+..-++.... .-++-+..|+.++
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDL 246 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhc
Confidence 446899999999999999999987777666 66554433332222211 2244455555443
No 446
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=72.15 E-value=7.4 Score=32.54 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh--CCCCCceEEEcCCCC
Q 022929 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAED 168 (290)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~v~~~~~d~~~ 168 (290)
.+.+.+.+..+.. ..+-|.+||.|.|.++..+.+. +..+...++.+...+.-.+-. +...+..+..+|+..
T Consensus 37 ~lT~KIvK~A~~~-~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 37 RLTDKIVKKAGNL-TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred HHHHHHHHhcccc-ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 3455555555544 5678999999999999999877 246777788877554433321 222345556666643
No 447
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=71.92 E-value=18 Score=31.56 Aligned_cols=89 Identities=21% Similarity=0.042 Sum_probs=52.3
Q ss_pred CCEEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCCCCCCCCCCccEEEecCcccc
Q 022929 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 111 ~~~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
..+|+=+|.|. |.++..+.+......+++.|.+....+.+.+... ..-. .+... ......|+|+..--+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv----~d~~~~~~~~--~~~~~aD~VivavPi~- 75 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV----IDELTVAGLA--EAAAEADLVIVAVPIE- 75 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc----ccccccchhh--hhcccCCEEEEeccHH-
Confidence 35788889885 5677777777445668999999988888874321 1111 11101 1123379888642221
Q ss_pred cCCHHHHHHHHHhccCCCCEE
Q 022929 188 WPDPQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l 208 (290)
....+++++...|++|..+
T Consensus 76 --~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred --HHHHHHHHhcccCCCCCEE
Confidence 2235666666666666554
No 448
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.80 E-value=52 Score=32.09 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEecCcc
Q 022929 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (290)
Q Consensus 111 ~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~~~l 185 (290)
..+|+=+|+|. |.......... +.+++.+|.+++.++.+++. +...+.+|..+.. ..-++.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vv~~--- 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRKY----GYKVYYGDATQLELLRAAGAEKAEAIVIT--- 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhC----CCeEEEeeCCCHHHHHhcCCccCCEEEEE---
Confidence 35788888775 55443333332 67999999999999988752 4678999987642 222357877753
Q ss_pred cccCCHHH--HHHHHHhccCCCCEEEEEcc
Q 022929 186 EYWPDPQR--GIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 186 ~~~~~~~~--~l~~~~~~L~pgG~l~i~~~ 213 (290)
.+|.+. .+-...+.+.|...++.-..
T Consensus 472 --~~d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 472 --CNEPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred --eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 233332 23334455678878776543
No 449
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.61 E-value=84 Score=29.13 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=41.7
Q ss_pred CCCEEEEEcCccchh--HHHHHhhCCCCeEEEEeCCH-HHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcc
Q 022929 110 RNMLVVDVGGGTGFT--TLGIVKHVDAKNVTILDQSP-HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~--~~~l~~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l 185 (290)
.+++|+=+|+|.... +..+++. +.+|+++|.+. +.++...+.....++.++..|..+. . .+.+|+|+.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE-F-LEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh-H-hhcCCEEEECCCC
Confidence 467899999886332 2333333 78999999975 3332222222223566777666442 1 2348988876544
No 450
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=71.59 E-value=15 Score=31.93 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=47.0
Q ss_pred cccHHHHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC
Q 022929 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (290)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~ 155 (290)
.....+....+.... .+++.|||.=+|+|..+...... +..++|+|++++.++.+.++..
T Consensus 206 ~~P~~l~~r~i~~~s--~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 206 QKPLALIERLIRDYS--FPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CChHHHHHHHHHhcC--CCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHH
Confidence 334455555555422 38899999999999998888777 7899999999999999988754
No 451
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.66 E-value=23 Score=30.70 Aligned_cols=84 Identities=14% Similarity=0.015 Sum_probs=49.6
Q ss_pred EEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+... +.....+.. . -...|+|+..--.. .
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~---~~~~~~~~~---~-~~~aDlVilavp~~---~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL---VDEASTDLS---L-LKDCDLVILALPIG---L 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC---cccccCCHh---H-hcCCCEEEEcCCHH---H
Confidence 466788885 4565666555 6789999999998888765421 111111111 1 12478888653322 1
Q ss_pred HHHHHHHHHhccCCCCEE
Q 022929 191 PQRGIREAYRVLKLGGKA 208 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l 208 (290)
..++++++...++++..+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 235677777777776444
No 452
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.54 E-value=55 Score=28.67 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=62.2
Q ss_pred EEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 022929 113 LVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (290)
Q Consensus 113 ~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~ 190 (290)
+|-=||+|. | .++..+++. +.++++.|.+++..+.+++. +.. ...+..++.-..+..|+|+..-.- -..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~-~~~s~~~~~~~~~~advVi~~vp~--~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL----GIT-ARHSLEELVSKLEAPRTIWVMVPA--GEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC----CCe-ecCCHHHHHHhCCCCCEEEEEecC--chH
Confidence 355678775 3 355555554 67899999998877766532 121 111222211001125777653211 112
Q ss_pred HHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCcEEEEEEc
Q 022929 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (290)
Q Consensus 191 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 254 (290)
.+.++..+...+++|..++-.....+. +..++.+.+++.|...++.--.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYK---------------DDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCch---------------hHHHHHHHHHHcCCeEEeCCCC
Confidence 245667777778777655444333222 3456667777777655554333
No 453
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=70.45 E-value=63 Score=28.25 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCEEEEE--cCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----C-CCCCCccEEEe
Q 022929 111 NMLVVDV--GGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (290)
Q Consensus 111 ~~~vLDi--G~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~-~~~~~~D~i~~ 181 (290)
+.+++=+ |+| .|..+..+++.. +.++++++.+++..+.+++... . .++..+-.++ . .....+|+++-
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~~d~vid 218 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKIGA-E--YVLNSSDPDFLEDLKELIAKLNATIFFD 218 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-c--EEEECCCccHHHHHHHHhCCCCCcEEEE
Confidence 3344433 554 477777788776 6789999999988888876321 1 1222111111 0 12235898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
... . .......+.++++|.++...
T Consensus 219 ~~g-----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 219 AVG-----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCC-----c--HHHHHHHHhhCCCCEEEEEE
Confidence 322 1 23355677889999988764
No 454
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.12 E-value=67 Score=30.08 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=47.2
Q ss_pred CCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 111 NMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 111 ~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
+++|+=+|-| +|.-+..+..+. +..|+..|.++.............++++..+.... +....+|+|+.+-.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEECCCCC
Confidence 6889999988 576555555553 79999999887763223322334567777765544 2234589998765554
No 455
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=69.47 E-value=7.1 Score=33.53 Aligned_cols=77 Identities=22% Similarity=0.124 Sum_probs=43.8
Q ss_pred hHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHhccC
Q 022929 124 TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203 (290)
Q Consensus 124 ~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 203 (290)
++..+.+..+..+|+|+|.+++.++.|.+... +.-...+.+. + ..+|+|+..--+. ....+++++...++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~---~~~~~~~~~~--~--~~~DlvvlavP~~---~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI---IDEASTDIEA--V--EDADLVVLAVPVS---AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS---SSEEESHHHH--G--GCCSEEEE-S-HH---HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC---eeeccCCHhH--h--cCCCEEEEcCCHH---HHHHHHHHhhhhcC
Confidence 35667777556999999999999999975422 1112221111 1 1279888643322 23356677777777
Q ss_pred CCCEEEE
Q 022929 204 LGGKACI 210 (290)
Q Consensus 204 pgG~l~i 210 (290)
+|+.+.=
T Consensus 71 ~~~iv~D 77 (258)
T PF02153_consen 71 PGAIVTD 77 (258)
T ss_dssp TTSEEEE
T ss_pred CCcEEEE
Confidence 6665543
No 456
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=69.41 E-value=47 Score=28.71 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCCCCCEEEEE--cCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--CCC-CCCccEEEe
Q 022929 107 LSNRNMLVVDV--GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFP-TDYADRYVS 181 (290)
Q Consensus 107 ~~~~~~~vLDi--G~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--~~~-~~~~D~i~~ 181 (290)
..+++.+||-- ..|-|.++..+++.. +.++++.--+.+-.+.|+++....-+.+...|+.+. .+. .+..|+++-
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyD 221 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYD 221 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeec
Confidence 33578887754 456788888888886 678888888888889999876544455555555221 122 345888874
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
.-.. ..+..-...||+.|.++--
T Consensus 222 svG~-------dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 222 SVGK-------DTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred cccc-------hhhHHHHHHhccCceEEEe
Confidence 3222 3567778899999998764
No 457
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=68.98 E-value=72 Score=27.97 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcC------CCCCCCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD------AEDLPFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d------~~~l~~~~~~~D~i~~ 181 (290)
.++.+||=.|+|. |..+..+++..+..++++++-+++..+.+++.. .. .++..+ +..+ .....+|+++.
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~i~~~-~~~~~~dvvld 241 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLG-AD--HVLNASDDVVEEVREL-TGGRGADAVID 241 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhC-Cc--EEEcCCccHHHHHHHH-hCCCCCCEEEE
Confidence 3678888888664 556666777764378999998888777775432 11 111111 1111 12235899985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ...++...+.|+++|.++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 242 FVG-----S-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred cCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 322 1 2467788899999999987653
No 458
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=68.16 E-value=25 Score=30.63 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEE-cCC--CCC-CCCCCCccEEEecC
Q 022929 110 RNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDA--EDL-PFPTDYADRYVSAG 183 (290)
Q Consensus 110 ~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~--~~l-~~~~~~~D~i~~~~ 183 (290)
++.+||=.|+ | .|..+..+++.. +.+++.++.+++..+.+++.. .. .++. .+. ..+ ......+|+++...
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g-~~--~v~~~~~~~~~~~~~~~~~~~d~vld~~ 221 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL-GYEVVASTGKADAADYLKKLG-AK--EVIPREELQEESIKPLEKQRWAGAVDPV 221 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHcC-CC--EEEcchhHHHHHHHhhccCCcCEEEECC
Confidence 4678988887 4 477777788876 678999999888888776432 11 1111 110 000 11234588877432
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. ..+....+.|+++|.++....
T Consensus 222 -----g~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 -----GG--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----cH--HHHHHHHHHhhcCCEEEEEee
Confidence 11 356788899999999988754
No 459
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.79 E-value=82 Score=27.69 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=57.2
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~~ 182 (290)
++.+||=.|+|. |..+..+++..+..++++++.+++-...+++.. ...+..+-.++ -.....+|+++-.
T Consensus 167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~l~~~~~~~~~dvvid~ 242 (344)
T cd08284 167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG----AEPINFEDAEPVERVREATEGRGADVVLEA 242 (344)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhC----CeEEecCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 678888888763 666677777763247899988877776666421 11122111111 0223458988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. . ...+....+.|+++|.++...
T Consensus 243 ~~-----~-~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 243 VG-----G-AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CC-----C-HHHHHHHHHhcccCCEEEEEC
Confidence 21 1 246778889999999988764
No 460
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=67.71 E-value=56 Score=28.82 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-CCCCCCccEEEecCccc
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSIE 186 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-~~~~~~~D~i~~~~~l~ 186 (290)
.++.+|+=.|||. |..+..+++.. +.++++++.+++..+.+++.. .. .++...-... ....+.+|+++....-
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~--~vi~~~~~~~~~~~~~~~d~v~~~~g~- 242 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALKLG-AD--EFIATKDPEAMKKAAGSLDLIIDTVSA- 242 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcC-Cc--EEecCcchhhhhhccCCceEEEECCCC-
Confidence 3677777788764 66666777775 578999999988888776432 11 1111110000 0113458888843221
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
. ..+..+.+.|+++|.++....
T Consensus 243 ----~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 243 ----S-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred ----c-chHHHHHHHhcCCCEEEEEec
Confidence 1 246777889999999887643
No 461
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.60 E-value=37 Score=30.61 Aligned_cols=97 Identities=24% Similarity=0.257 Sum_probs=60.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-------CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-------PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-------~~~~~~~D~i~~ 181 (290)
++.+||-.|+|. |..+..+++..+..+++++|.+++..+.+++... ..+ |..+. ....+.+|+++-
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~----~~v--~~~~~~~~~~i~~~~~~~~d~v~d 249 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA----IPI--DFSDGDPVEQILGLEPGGVDRAVD 249 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----eEe--ccCcccHHHHHHHhhCCCCCEEEE
Confidence 678888888874 7777777877633478889999888887775321 111 11110 011235898886
Q ss_pred cCccccc-----CCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYW-----PDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...-... .+....+..+.++|+++|.+....
T Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 250 CVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 4322110 122346788899999999997654
No 462
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=66.95 E-value=28 Score=32.74 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~ 188 (290)
.+++|+=+|+|. |......+..+ +.+|+++|.++.....+... +.+.. ++.++ . ...|+|+....
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~~~----G~~~~--~leel-l--~~ADIVI~atG---- 318 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAAME----GYQVV--TLEDV-V--ETADIFVTATG---- 318 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHhc----Cceec--cHHHH-H--hcCCEEEECCC----
Confidence 789999999997 54444444444 67899998887654333321 22221 22221 1 24899987532
Q ss_pred CCHHHHH-HHHHhccCCCCEEEEEccC
Q 022929 189 PDPQRGI-REAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 189 ~~~~~~l-~~~~~~L~pgG~l~i~~~~ 214 (290)
.. .++ .+....+|||+.|+-....
T Consensus 319 -t~-~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 -NK-DIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -cc-cccCHHHHhccCCCcEEEEcCCC
Confidence 22 233 4788889999999776543
No 463
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.80 E-value=84 Score=27.64 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=58.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-------CCCCCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-------EDLPFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-------~~l~~~~~~~D~i~~ 181 (290)
++.+|+=.|||. |..+..+++..+...+++++.+++..+.+++... . .++...- ..+ .....+|+++.
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga-~--~v~~~~~~~~~~~i~~~-~~~~~~d~il~ 243 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-T--DIVAERGEEAVARVREL-TGGVGADAVLE 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-c--eEecCCcccHHHHHHHh-cCCCCCCEEEE
Confidence 567777788874 7777778888643458999988877666664321 1 1111110 111 12335888884
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
.. .. ...+..+.+.++++|.++....
T Consensus 244 ~~-----g~-~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 244 CV-----GT-QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred CC-----CC-HHHHHHHHHhhccCCEEEEecc
Confidence 32 11 3467888999999999987653
No 464
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=66.58 E-value=67 Score=28.35 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CCC-----CCCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-----PFPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~l-----~~~~~~~D~i~~~ 182 (290)
++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. ... +++...- .++ ....+.+|+++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~--~~i~~~~~~~~~~~~~~~~~~~~d~vi~~ 240 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAREL-GAV--ATVNASEVEDVAAAVRDLTGGGAHVSVDA 240 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHh-CCC--EEEccccchhHHHHHHHHhCCCCCEEEEc
Confidence 678888888763 66777777775 67899999998888888643 211 2221111 111 0111258988854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
-. . ...+....+.|+++|.++...
T Consensus 241 ~g-----~-~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 241 LG-----I-PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEEeC
Confidence 21 1 245677889999999988764
No 465
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=66.51 E-value=32 Score=27.24 Aligned_cols=77 Identities=17% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCC-CHHHHHHHHHHCCCcEEEEEEcCcccccccccccceee
Q 022929 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFP-KEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMG 270 (290)
Q Consensus 192 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~ 270 (290)
+.+++-+.+.|.|||.+++.-. .+. .........++ ...-+-..|.++||+..+-.-+++-+.++-.
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~-~D~----eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfPEG~~EGg~------- 133 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYV-EDR----ETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFPEGGMEGGP------- 133 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-T-T-H----HHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE--TTTSTT-E-------
T ss_pred HHHHHHHHHHhhhcCeEEEEEe-cCH----HHHHHHHcCCCcccchhHHHHHhCCcEEEeeeeccCccccCCc-------
Confidence 4688999999999999988622 111 11111111111 1234567888999998777666655443332
Q ss_pred eEEEEecCCCC
Q 022929 271 CSVTGVKPASG 281 (290)
Q Consensus 271 ~~~~a~k~~~~ 281 (290)
.+.|.||.+.
T Consensus 134 -KlQa~Kpl~~ 143 (170)
T PF06557_consen 134 -KLQAEKPLNE 143 (170)
T ss_dssp -EEEEE--SSH
T ss_pred -eeeeecCCCH
Confidence 5778887653
No 466
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=66.51 E-value=93 Score=30.20 Aligned_cols=74 Identities=20% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhC-----------CCCCceEEEcCCCCCC-C--CC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-----------PLKECKIVEGDAEDLP-F--PT 173 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~-----------~~~~v~~~~~d~~~l~-~--~~ 173 (290)
.+.+||-.|+ +|.++..+++.+ .+.+|++++.+.+.+....+.. ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 5677887775 455555554432 2678999988877654432211 0135788999997632 1 11
Q ss_pred CCccEEEecCc
Q 022929 174 DYADRYVSAGS 184 (290)
Q Consensus 174 ~~~D~i~~~~~ 184 (290)
+..|+||++..
T Consensus 158 ggiDiVVn~AG 168 (576)
T PLN03209 158 GNASVVICCIG 168 (576)
T ss_pred cCCCEEEEccc
Confidence 34898887643
No 467
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=66.50 E-value=92 Score=27.41 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCC---C-CCCCCCccEEEec
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---L-PFPTDYADRYVSA 182 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~---l-~~~~~~~D~i~~~ 182 (290)
.++.+||=.|+ | .|..+..+++.. +.++++++.+. ..+.+++.. . . .+...+-.. . ......+|+++..
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~~~~g-~-~-~~~~~~~~~~~~~~~~~~~~~d~vi~~ 250 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAVRALG-A-D-TVILRDAPLLADAKALGGEPVDVVADV 250 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHHHhcC-C-e-EEEeCCCccHHHHHhhCCCCCcEEEec
Confidence 37889999987 3 477777778876 67788887654 555564321 1 1 122111100 0 1123459998854
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ...+....+.|+++|.++...
T Consensus 251 ~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 251 VG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEec
Confidence 22 135678889999999988654
No 468
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.19 E-value=34 Score=29.76 Aligned_cols=94 Identities=18% Similarity=0.042 Sum_probs=53.6
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|.=||+|. | .++..+++. +.+|+.+|.+++.++.+.++.. . .++. ...|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH-
Confidence 3578889985 3 344555555 6789999999999888764310 0 0111 1222211
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.. ...|+|+..-. ....-.+.++.++.+.++|+..+....
T Consensus 78 ~~--~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 AV--ADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred hh--cCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 11 23788885421 111112357778888888877665543
No 469
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=66.03 E-value=17 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=33.9
Q ss_pred CCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhh
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 152 (290)
.+.+|+-||+|-...+..+... ..+|.+||+++..+..-+-
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~l 103 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRL 103 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHH
Confidence 6789999999988787777776 5799999999988776553
No 470
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=66.03 E-value=39 Score=24.58 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=64.4
Q ss_pred EEEEEcCccc-h-hHHHHHhhCCCCeEEE-EeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 113 LVVDVGGGTG-F-TTLGIVKHVDAKNVTI-LDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 113 ~vLDiG~G~G-~-~~~~l~~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
+|.=||+|.. . ....+....++.++++ +|.+++..+.+.+... +. ...|..++- .+..+|+|+...--.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~---~~-~~~~~~~ll-~~~~~D~V~I~tp~~--- 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG---IP-VYTDLEELL-ADEDVDAVIIATPPS--- 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT---SE-EESSHHHHH-HHTTESEEEEESSGG---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc---cc-chhHHHHHH-HhhcCCEEEEecCCc---
Confidence 5778999863 2 2234444446777765 6999988887765543 33 444544332 223599888643321
Q ss_pred CHHHHHHHHHhccCCCCEEEEEccCCCchhHhhhhHHHhhcCCCHHHHHHHHHHCCCc
Q 022929 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 247 (290)
.-..-+...|+-|-.+++.-|...+.. +.+++.++.++.|-.
T Consensus 74 ---~h~~~~~~~l~~g~~v~~EKP~~~~~~-------------~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 74 ---SHAEIAKKALEAGKHVLVEKPLALTLE-------------EAEELVEAAKEKGVK 115 (120)
T ss_dssp ---GHHHHHHHHHHTTSEEEEESSSSSSHH-------------HHHHHHHHHHHHTSC
T ss_pred ---chHHHHHHHHHcCCEEEEEcCCcCCHH-------------HHHHHHHHHHHhCCE
Confidence 234456666667777777766543321 235566666666654
No 471
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=65.97 E-value=26 Score=27.75 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
++.+|+=+|.|. |.-+..++..+ +.+++..|..+..++.....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcc
Confidence 568999999996 77788888887 68999999999888777654
No 472
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.48 E-value=40 Score=31.28 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=45.7
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC----CCCCCccEEEec
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~----~~~~~~D~i~~~ 182 (290)
...+|+=+|+|. ++..+++.+ .+..++.+|.+++.++.+++.. .++.++.+|..+.. ..-..+|.|++.
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 457899999864 333333322 2678999999999988877653 25667888885431 222458888753
No 473
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=65.35 E-value=85 Score=26.90 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
++.+|+=.|+ +.|..+..+++.. +.++++++.+++-.+.+++ .... ..+ .+..+ ..++.+|+++....
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~g~~--~~~-~~~~~--~~~~~~d~vl~~~g--- 201 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRE-LGAA--EVV-VGGSE--LSGAPVDLVVDSVG--- 201 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCc--EEE-ecccc--ccCCCceEEEECCC---
Confidence 4788888887 3577777777776 6789999988888888876 3221 111 11111 12235898885421
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. ..+....+.|+++|.++...
T Consensus 202 --~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 --G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred --c--HHHHHHHHHhcCCCEEEEEe
Confidence 1 25678899999999998764
No 474
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=65.28 E-value=32 Score=30.24 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCC-CC----C-CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-ED----L-PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~-~~----l-~~~~~~~D~i~~ 181 (290)
.++.+||=.|+|. |..+..+++...+.++++++.+++..+.+++.. .. .++...- .+ + .... .+|.++.
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g-~~--~v~~~~~~~~~~~~v~~~~~-~~d~vi~ 236 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG-AD--LTINSKRVEDVAKIIQEKTG-GAHAAVV 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcC-Cc--EEecccccccHHHHHHHhcC-CCcEEEE
Confidence 3788999888764 667777777633678999999999888886432 11 1111110 11 0 0112 3774442
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
... ....++...+.|+++|.++...
T Consensus 237 ~~~------~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 237 TAV------AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred eCC------CHHHHHHHHHhccCCCEEEEEe
Confidence 211 1246788899999999998764
No 475
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.09 E-value=1.3e+02 Score=28.53 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=43.0
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
++++|+=+|.|. |..+..++... +.+|++.|..+..++.+++ .++.+...+.....+ ..+|+|+.+-.+.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~~~~~~~l~~----~g~~~~~~~~~~~~l--~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRF-GARPTVCDDDPDALRPHAE----RGVATVSTSDAVQQI--ADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHh----CCCEEEcCcchHhHh--hcCCEEEECCCCC
Confidence 578999999995 55555555553 6899999987665554433 245554432211112 2379888766554
No 476
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.98 E-value=31 Score=30.05 Aligned_cols=90 Identities=19% Similarity=0.086 Sum_probs=53.0
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------C------------CCceEEEcCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~------------~~v~~~~~d~~~l 169 (290)
.+|.=||+|. | .++..++.. +.+|+..|.+++.++.+.+... . .++. ...|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS-TATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-eeCCHHH-
Confidence 5688899986 3 344555554 6799999999998877543210 0 1122 1223322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEE
Q 022929 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 170 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
. ...|+|+..- .....-.+.+++++...++++..++
T Consensus 81 -~--~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 -L--ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -h--cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2 2378887531 1111113467888888999887665
No 477
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.89 E-value=38 Score=28.44 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=45.0
Q ss_pred CCCEEEEEcCccchhHHHHHhhC--CCCeEEEEeCCHH-HHHHHhhhCCCCCceEEEcCCCCC-----------CCCCCC
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPH-QLAKAKQKEPLKECKIVEGDAEDL-----------PFPTDY 175 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~v~~~~~d~~~l-----------~~~~~~ 175 (290)
..+.||-.||.+|.++..+++.+ .+..|+++--+-+ |.+.+.+. ++.....|+.+. .+++++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~----gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF----GLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh----CCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 56789999999999888887664 3678888755433 44444321 344555565432 256778
Q ss_pred ccEEEec
Q 022929 176 ADRYVSA 182 (290)
Q Consensus 176 ~D~i~~~ 182 (290)
.|+.+-+
T Consensus 82 ld~L~NN 88 (289)
T KOG1209|consen 82 LDLLYNN 88 (289)
T ss_pred eEEEEcC
Confidence 8888764
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=64.18 E-value=22 Score=27.33 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=54.1
Q ss_pred EEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCC--ceEEEc-CCCCCCCCCCCccEEEecCccc
Q 022929 114 VVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE--CKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 114 vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~--v~~~~~-d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
|+=+|+|. |.+....... .+.+|+.++-++ ..+..++... ... ..+... .....+...+.+|+|+..-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-
Confidence 45678875 5444333333 378999999877 5555443311 001 011110 011101234569998865211
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEccCCC
Q 022929 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (290)
Q Consensus 187 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 216 (290)
.+.+..++.+...+.++..+++......
T Consensus 78 --~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 78 --YQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp --GGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred --cchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 2345688899999999988887765543
No 479
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=64.16 E-value=57 Score=28.44 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=39.9
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC--CCceEEEcCCCCCCCCCCCccEEEecCccc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~ 186 (290)
.+++|+=+|||- |......+...+..+++.+|.+.+-.+...+.... ..+.+... .++.-.-..+|+|+......
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~--~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG--SDLAAALAAADGLVHATPTG 203 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec--cchHhhhCCCCEEEECCcCC
Confidence 568899999985 44333333333345899999987655444332211 12222221 11110113489998765443
No 480
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=63.99 E-value=62 Score=29.16 Aligned_cols=96 Identities=18% Similarity=0.049 Sum_probs=52.6
Q ss_pred CCCEEEEEcCccchhHHHHHhhCC-CCeEEE-EeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccc
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTI-LDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~-vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~ 187 (290)
+..+|.=||||.|..-.......+ +.+++| +|.+++..+...+.+. +. ...|++++. .+..+|+|+......+
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g---i~-~y~~~eell-~d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG---VP-LYCEVEELP-DDIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC---CC-ccCCHHHHh-cCCCEEEEEeCCCCCC
Confidence 346899999988865444444445 677777 5888876665555443 22 335665554 2333666665432111
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEccC
Q 022929 188 WPDPQRGIREAYRVLKLGGKACIIGPV 214 (290)
Q Consensus 188 ~~~~~~~l~~~~~~L~pgG~l~i~~~~ 214 (290)
.. -.+-+...|+.|=.++++-+.
T Consensus 77 ~~----H~e~a~~aL~aGkHVL~EKPl 99 (343)
T TIGR01761 77 GQ----GSALARALLARGIHVLQEHPL 99 (343)
T ss_pred cc----HHHHHHHHHhCCCeEEEcCCC
Confidence 11 123344555555566555444
No 481
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=63.91 E-value=1.2e+02 Score=27.94 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCEEEEEcCcc-chh-HHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC---CCCce-----------E-EEcCCCCCCCC
Q 022929 110 RNMLVVDVGGGT-GFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECK-----------I-VEGDAEDLPFP 172 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~-~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~v~-----------~-~~~d~~~l~~~ 172 (290)
...+|--||=|. |.- +..++.. +.+|+|+|+++..++....-.. ..... + ...|...+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--- 82 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--- 82 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc---
Confidence 347788888886 543 3333444 7899999999998887763211 00000 1 11111111
Q ss_pred CCCccEEEec--Ccc--cccCCH---HHHHHHHHhccCCCCEEEEEccCCCc
Q 022929 173 TDYADRYVSA--GSI--EYWPDP---QRGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 173 ~~~~D~i~~~--~~l--~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
...|+++.. .-+ .+.+|. ....+.+...|++|-.+++.+...+.
T Consensus 83 -~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 83 -KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred -ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 136765541 111 133443 36888999999999999998887765
No 482
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=63.90 E-value=30 Score=28.47 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCC
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQS 143 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s 143 (290)
...+|+=+|||. |......+...+..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 468899999994 5544443344345689999986
No 483
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=63.82 E-value=33 Score=30.16 Aligned_cols=90 Identities=20% Similarity=0.062 Sum_probs=49.9
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCcccccC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~l~~~~ 189 (290)
.+|.=||+|. | .++..+.+.....+|+++|.+++..+.+++... ......+..+. . ...|+|+..--..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~---~~~~~~~~~~~-~--~~aDvViiavp~~--- 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL---GDRVTTSAAEA-V--KGADLVILCVPVG--- 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC---CceecCCHHHH-h--cCCCEEEECCCHH---
Confidence 5788999886 3 344444443111489999999988877764321 01111121111 1 2378887653322
Q ss_pred CHHHHHHHHHhccCCCCEEEE
Q 022929 190 DPQRGIREAYRVLKLGGKACI 210 (290)
Q Consensus 190 ~~~~~l~~~~~~L~pgG~l~i 210 (290)
....+++.+...++++..++.
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEe
Confidence 123456666667777765543
No 484
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=63.46 E-value=35 Score=29.77 Aligned_cols=91 Identities=20% Similarity=0.117 Sum_probs=52.5
Q ss_pred CEEEEEcCcc-c-hhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCC--------CC-----------CceEEEcCCCCCC
Q 022929 112 MLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LK-----------ECKIVEGDAEDLP 170 (290)
Q Consensus 112 ~~vLDiG~G~-G-~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~-----------~v~~~~~d~~~l~ 170 (290)
.+|.=||+|. | .++..++.. +.+|+++|.+++.++.++++.. .. +......+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH--
Confidence 5688899985 3 455555555 6899999999988876543210 00 00111222211
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHhccCCCCEEE
Q 022929 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (290)
Q Consensus 171 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 209 (290)
. ...|+|+.. +.+.......++.++...++|+..+.
T Consensus 81 ~--~~aD~Viea-v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 L--RDADFIIEA-IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred h--CCCCEEEEc-CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2 237888754 22212223467888888888887654
No 485
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=63.41 E-value=60 Score=30.02 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCCEEEEEcCc-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCCCCCCCccEEEecCc
Q 022929 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (290)
Q Consensus 110 ~~~~vLDiG~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~~~~~~~D~i~~~~~ 184 (290)
.+.++|=||.| .|.+...-....+..+++.+.-+.+-.....+.+. .+.. .+.+++-.-..+|+|++...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---~~~~--~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---AEAV--ALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---Ceee--cHHHHHHhhhhCCEEEEecC
Confidence 67899999999 56655444444334677777665543332222222 1222 22222211134999998644
No 486
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=63.12 E-value=97 Score=27.41 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC----C--CCCCCccEEEec
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----P--FPTDYADRYVSA 182 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l----~--~~~~~~D~i~~~ 182 (290)
++.+||=.|+|. |..+..+++..+...++++|-+++....+++... . .++..+-.++ . .....+|+++..
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-~--~v~~~~~~~~~~~~~~~~~~~~vdvvld~ 250 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGA-D--VVLNPPEVDVVEKIKELTGGYGCDIYIEA 250 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 677777777754 6677778888754568889988887776664321 1 1111110110 0 122348988853
Q ss_pred CcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. .. ...+..+.+.++++|.++...
T Consensus 251 ~-----g~-~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 251 T-----GH-PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred C-----CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 2 11 235777899999999987764
No 487
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=63.04 E-value=1e+02 Score=26.81 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~ 181 (290)
.++.+||=.|+ | .|..+..+++.. +.++++++.+++..+.+++..... .++..+-.+. ....+.+|+++.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~v~~~~~~~~d~vi~ 220 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFD--AAINYKTPDLAEALKEAAPDGIDVYFD 220 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCc--eEEecCChhHHHHHHHhccCCceEEEE
Confidence 36788988884 3 577777788875 678999998888888776533221 1221111000 011245898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
... ...++...+.|+++|.++...
T Consensus 221 ~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 221 NVG-------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred cch-------HHHHHHHHHhcCCCceEEEEe
Confidence 321 136778889999999988654
No 488
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=62.73 E-value=62 Score=27.53 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCCCEEEEEcC-c-cchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC--CCCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l--~~~~~~~D~i~~~~~ 184 (290)
.++.+||=.|+ | .|..+..+++.. +.+++.++.++ ..+.+++. .. ..++.....+. ....+.+|+++....
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~-~~~~~~~~-g~--~~~~~~~~~~~~~~~~~~~~d~v~~~~~ 217 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKAR-GARVIATASAA-NADFLRSL-GA--DEVIDYTKGDFERAAAPGGVDAVLDTVG 217 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEecch-hHHHHHHc-CC--CEEEeCCCCchhhccCCCCceEEEECCc
Confidence 37788988886 3 466666777765 67888887766 55555432 21 12222111111 122345888875321
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
. .......+.++++|.++...
T Consensus 218 -----~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 218 -----G--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred -----h--HHHHHHHHHHhcCcEEEEEc
Confidence 1 25677888899999988764
No 489
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=62.62 E-value=90 Score=26.67 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=57.5
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEE
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYV 180 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~ 180 (290)
.++.+|+-.|| +.|..+..+++.. +.+++.++.+++..+.+++... . ..+..+-.+. ......+|+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALGA-D--HVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcCC-c--eeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 36789999998 2466666777765 6789999998888777764321 1 1111111111 01223588887
Q ss_pred ecCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
....- ..+..+.+.++++|.++...
T Consensus 214 ~~~g~-------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVGG-------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECccH-------HHHHHHHHhhccCCEEEEEc
Confidence 54321 24566778899999987654
No 490
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.05 E-value=92 Score=26.75 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=52.8
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC---CCCCCCccEEEecC
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFPTDYADRYVSAG 183 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l---~~~~~~~D~i~~~~ 183 (290)
.++.+|+-.|+ +.|..+..+++.. +.++++++.+ +..+.+++.. .. .++.....+. ....+.+|+++...
T Consensus 142 ~~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~~~d~vi~~~ 216 (319)
T cd08267 142 KPGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAELVRSLG-AD--EVIDYTTEDFVALTAGGEKYDVIFDAV 216 (319)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHHHHHcC-CC--EeecCCCCCcchhccCCCCCcEEEECC
Confidence 37889999997 3577777888776 6788888754 5556564321 11 1111111110 12334589998542
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
.- ........+ ..++++|.++...
T Consensus 217 ~~----~~~~~~~~~-~~l~~~g~~i~~g 240 (319)
T cd08267 217 GN----SPFSLYRAS-LALKPGGRYVSVG 240 (319)
T ss_pred Cc----hHHHHHHhh-hccCCCCEEEEec
Confidence 21 111222222 2399999998764
No 491
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=61.72 E-value=34 Score=31.66 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHH
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLA 148 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~ 148 (290)
++.+|+-+|+|. |......+...+..+++.++.+.+...
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 678999999985 555444444443378999999876544
No 492
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=61.58 E-value=9.9 Score=32.29 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHh
Q 022929 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (290)
Q Consensus 97 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 151 (290)
+...+.+.++.. +..+++|.=||+|..+..++.. +..++.-|+++..+...+
T Consensus 8 l~~~I~~~ip~~-~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKN-KHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S--S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCC-CCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHH
Confidence 444555555432 5789999999999999888764 689999999987666555
No 493
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=61.40 E-value=57 Score=28.68 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCC----C-----CCCCCCCccE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE----D-----LPFPTDYADR 178 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~----~-----l~~~~~~~D~ 178 (290)
.++.+||=.|+|. |..+..+++..+...+++++.+++..+.+++... . .++..+-. . .....+.+|+
T Consensus 160 ~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 236 (341)
T cd08262 160 TPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGA-D--IVVDPAADSPFAAWAAELARAGGPKPAV 236 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-c--EEEcCCCcCHHHHHHHHHHHhCCCCCCE
Confidence 3678888888753 5566677777644458888988888887765321 1 12211111 0 0122345898
Q ss_pred EEecCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
++-.. .. ...+....+.++++|.++....
T Consensus 237 vid~~-----g~-~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 237 IFECV-----GA-PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred EEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 88432 11 1356777888999999987653
No 494
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.18 E-value=1e+02 Score=26.42 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=60.3
Q ss_pred CCCCEEEEEcC--ccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC-----CCCCCCccEEEe
Q 022929 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (290)
Q Consensus 109 ~~~~~vLDiG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l-----~~~~~~~D~i~~ 181 (290)
.++.+||=.|+ +.|..+..+++.. +.++++++.+++..+.+++.. +..+..+-.++ .. .+.+|+++.
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~i~~~-~~~~d~vl~ 214 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKELG----ADEVVIDDGAIAEQLRAA-PGGFDKVLE 214 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC----CcEEEecCccHHHHHHHh-CCCceEEEE
Confidence 36789998886 3577888888886 678999998888877775432 11111111110 12 345898885
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEcc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 213 (290)
... . ..+....+.|+++|.++....
T Consensus 215 ~~~-----~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 215 LVG-----T--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred CCC-----h--HHHHHHHHHhccCCEEEEEcc
Confidence 322 1 357788899999999987643
No 495
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=60.65 E-value=18 Score=32.59 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCcc--chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCCC--CCCCCccEEEecCc
Q 022929 109 NRNMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (290)
Q Consensus 109 ~~~~~vLDiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l~--~~~~~~D~i~~~~~ 184 (290)
.++..||=+|.+. |..++.+++... ...+...-|++.++.+++.....-+++...|..+.. ...+.||+|+-+-.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG 234 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence 3778888887765 678888899875 567777788999999987643222222222222111 11456999985433
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEE
Q 022929 185 IEYWPDPQRGIREAYRVLKLGGKACII 211 (290)
Q Consensus 185 l~~~~~~~~~l~~~~~~L~pgG~l~i~ 211 (290)
-... ...+...+++|+..++.
T Consensus 235 ~~~~------~~~~~~l~~~g~~~~i~ 255 (347)
T KOG1198|consen 235 GSTL------TKSLSCLLKGGGGAYIG 255 (347)
T ss_pred CCcc------ccchhhhccCCceEEEE
Confidence 3222 23344455556555443
No 496
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=60.61 E-value=1.4e+02 Score=27.67 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCeEEEEeCCHHHHHHHhhhCCC---C--------CceEEEcCCCCCCCCCCCcc
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K--------ECKIVEGDAEDLPFPTDYAD 177 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~--------~v~~~~~d~~~l~~~~~~~D 177 (290)
+..+|-=||.|. |.-....... +.+|+++|++++.++...+.... . +......+... -...|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~--~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~----~~~ad 78 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK--SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEK----IKECN 78 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc--CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHH----HcCCC
Confidence 456788888875 3322222222 47999999999998887732210 0 00011111111 12378
Q ss_pred EEEecCc-ccc---cCCHH---HHHHHHHhccCCCCEEEEEccCCCc
Q 022929 178 RYVSAGS-IEY---WPDPQ---RGIREAYRVLKLGGKACIIGPVYPT 217 (290)
Q Consensus 178 ~i~~~~~-l~~---~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~ 217 (290)
+++..-. -.. .++.. ...+.+...|++|..++..+...+.
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 7775321 111 13333 3456788889888877777666554
No 497
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=60.15 E-value=68 Score=28.92 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCcc-chhHHHHHhhCCCC-eEEEEeCCHHHHHHHhhhCCCCCceEEE-cCCC-CC-----CCCCCCccEE
Q 022929 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVE-GDAE-DL-----PFPTDYADRY 179 (290)
Q Consensus 109 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~v~~~~-~d~~-~l-----~~~~~~~D~i 179 (290)
+++.+||=+|+|. |..+..+++.. +. +++.+|.+++-.+.+++. ... +++. .+.. +. ....+.+|++
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~a~~l-Ga~--~~i~~~~~~~~~~~~v~~~~~~~~d~v 264 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAA-GASRIIAVDINKDKFAKAKEL-GAT--ECINPQDYKKPIQEVLTEMTDGGVDFS 264 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CCc--eEecccccchhHHHHHHHHhCCCCeEE
Confidence 3678888888764 66666777776 45 799999999988888653 221 1111 1100 00 0111358988
Q ss_pred EecCcccccCCHHHHHHH-HHhccCCCCEEEEEcc
Q 022929 180 VSAGSIEYWPDPQRGIRE-AYRVLKLGGKACIIGP 213 (290)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~~ 213 (290)
+-... . ...+.. +...++++|.++....
T Consensus 265 ld~~g-----~-~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 265 FEVIG-----R-LDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred EECCC-----C-cHHHHHHHHhhccCCCEEEEEcc
Confidence 75321 1 234444 4445678899887754
No 498
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=58.75 E-value=1.2e+02 Score=26.07 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=56.7
Q ss_pred CCCEEEEEcCcc-chhHHHHHhhCCCCe-EEEEeCCHHHHHHHhhhCCCCCceEEEcCCCCC------CCCCCCccEEEe
Q 022929 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (290)
Q Consensus 110 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~v~~~~~d~~~l------~~~~~~~D~i~~ 181 (290)
++.+||=.|+|. |..+..+++.. +.+ ++++.-+++..+.+++... . .++..+-.++ ......+|+++.
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~l~~~~~~~~vd~vld 204 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDRRPARLALARELGA-T--EVVTDDSEAIVERVRELTGGAGADVVIE 204 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-c--eEecCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 678888777653 66666777776 566 8888888877776554221 1 1121111111 012345899985
Q ss_pred cCcccccCCHHHHHHHHHhccCCCCEEEEEc
Q 022929 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (290)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 212 (290)
...- ...+....+.|+++|.++...
T Consensus 205 ~~g~------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 205 AVGH------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCC------HHHHHHHHHHhccCCEEEEEc
Confidence 4211 235677889999999998764
No 499
>PLN02427 UDP-apiose/xylose synthase
Probab=58.41 E-value=43 Score=30.33 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=43.8
Q ss_pred CCCEEEEEcCccchhHHHHHhhC---CCCeEEEEeCCHHHHHHHhhhC---CCCCceEEEcCCCCCC-C--CCCCccEEE
Q 022929 110 RNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP-F--PTDYADRYV 180 (290)
Q Consensus 110 ~~~~vLDiG~G~G~~~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~---~~~~v~~~~~d~~~l~-~--~~~~~D~i~ 180 (290)
+.++||=.| |+|.++..+++.+ ++.+|+++|.+........... ...+++++.+|+.+.. + .-..+|+|+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 456788666 6777777776643 2468999997655443322211 1136889999997632 1 012379887
Q ss_pred ecC
Q 022929 181 SAG 183 (290)
Q Consensus 181 ~~~ 183 (290)
-..
T Consensus 92 HlA 94 (386)
T PLN02427 92 NLA 94 (386)
T ss_pred Ecc
Confidence 543
No 500
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=58.33 E-value=10 Score=31.63 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=45.0
Q ss_pred HHhhccccCCCCCCCEEEEEcCccchhHHHHHhhCCCCeEEEEeCCHHHHHHHhhh
Q 022929 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (290)
Q Consensus 98 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 153 (290)
.+.++..+.. .++.+.+|.--|.|..+..+.+..+..++++.|-+|-+.+.|+..
T Consensus 32 ~devl~~lsp-v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 32 LDEVLDILSP-VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred hhhHHHHcCC-CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 3444444443 378999999999999999999999999999999999988888754
Done!