BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022930
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 39/126 (30%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITV 128
+A+ A+D +DG V+DGRE+ V
Sbjct: 67 DAEDAMDAMDGA---------------------------------------VLDGRELRV 87
Query: 129 QFAKYG 134
Q A+YG
Sbjct: 88 QMARYG 93
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 39/126 (30%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITV 128
+A+ A+D +DG V+DGRE+ V
Sbjct: 67 DAEDAMDAMDGA---------------------------------------VLDGRELRV 87
Query: 129 QFAKYG 134
Q A+YG
Sbjct: 88 QMARYG 93
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLN 83
+A+ A+D +DG L+
Sbjct: 67 DAEDAMDAMDGAVLD 81
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLN 83
+A+ A+D +DG L+
Sbjct: 67 DAEDAMDAMDGAVLD 81
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLN 83
+A+ A+D +DG L+
Sbjct: 67 DAEDAMDAMDGAVLD 81
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLN 83
+A+ A+D +DG L+
Sbjct: 67 DAEDAMDAMDGAVLD 81
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGLFLN 83
+A+ A+D +DG L+
Sbjct: 67 DAEDAMDAMDGAVLD 81
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 49/75 (65%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ +L V N+T+RT+ D L +FEKYG+V DV+IPR+ T RGFAFVR+
Sbjct: 7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66
Query: 69 EAQKAVDRLDGLFLN 83
+AQ A +DG L+
Sbjct: 67 DAQDAEAAMDGAELD 81
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PDI SL + N++++TT +DL FE+YG + DV IPRD+ + S+GF FVR+ +
Sbjct: 13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRD 72
Query: 70 AQKAVDRLDGLFLN 83
A+ A+DR DG ++
Sbjct: 73 AEHALDRTDGKLVD 86
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
GK G D D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ Y
Sbjct: 214 GKYGERD--DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISY 271
Query: 65 KYADEAQKAVDRLDGLFLNFNFVHEILK 92
D+A KA +++DG F F H IL+
Sbjct: 272 ADRDDAVKACNKMDG----FGFRHLILR 295
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D+ +L V N++ DL +F +YG V VF+ +DR TG ++GFAFV Y +A KA
Sbjct: 200 DSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSYADRTDAAKA 259
Query: 74 VDRLDGLFLNFNFVHEILK 92
+++DG F F H IL+
Sbjct: 260 CEKMDG----FGFGHLILR 274
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
IR+T L + NI + T DD LF YG++ +V I D RTG S+GFA+V +K AD A
Sbjct: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
Query: 72 KAVDRLDGLFLNFNFVH 88
A LD +H
Sbjct: 386 TAFVELDKQIFQGRLLH 402
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
++V N+ F T D+F LF +G++ V +P+ + +RGFAFV + EA+ A+D+L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENAMDQL 812
Query: 78 DGLFL 82
G+ L
Sbjct: 813 QGVHL 817
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ ++ +A KA
Sbjct: 206 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKA 265
Query: 74 VDRLDGLFLNFNFVHEILK 92
+++DG + F H IL+
Sbjct: 266 CEKMDG----YGFKHLILR 280
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ ++ +A KA
Sbjct: 206 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKA 265
Query: 74 VDRLDGLFLNFNFVHEILK 92
+++DG + F H IL+
Sbjct: 266 CEKMDG----YGFKHLILR 280
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + G +RDT +L V N++ T + L +F KYG++V I RD+ TG RG AF+R
Sbjct: 153 FARPGGEQLRDT-NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIR 211
Query: 64 YKYADEAQKAVDRLDGLF 81
+ +EAQ+A+ L+ +
Sbjct: 212 FNKREEAQEAISALNNVI 229
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I RD +TG S G+ FV + +A +A++ L
Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139
Query: 78 DGL 80
+G+
Sbjct: 140 NGI 142
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEA 70
D D +L V N++ T DDL +F KYG + V++ +DR TG RGFAFV Y A
Sbjct: 209 DDDDELTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHA 268
Query: 71 QKAVDRLDG 79
Q A++ +DG
Sbjct: 269 QAALEAMDG 277
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
SLLV N+ +DL FE++G V D+++PRD TGD RGF FV++ +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 77 LDGLFL 82
+DG L
Sbjct: 97 MDGYLL 102
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ + ++A KA
Sbjct: 221 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKA 280
Query: 74 VDRLDGLFLNFNFVHEILK 92
+++DG + F H IL+
Sbjct: 281 CNKMDG----WGFKHLILR 295
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 160 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218
Query: 64 YKYADEAQKAVDRLDGLF 81
+ +EAQ+A+ L+ +
Sbjct: 219 FNKREEAQEAISALNNVI 236
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 6 KSGPPDIRDTYSL----LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFA 60
SG D D L++N + D +L+ LF G + I +D +TG S G+A
Sbjct: 70 NSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYA 129
Query: 61 FVRYKYADEAQKAVDRLDGL 80
FV + +AQ A+ L+G+
Sbjct: 130 FVDFASEIDAQNAIKSLNGV 149
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V N+ + D L LF + GKVVD + DR +G SRGF FV Y A+E A++ L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 78 DGLFLN 83
DG+ LN
Sbjct: 250 DGVDLN 255
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PD++ + V N+ F + L LFE+ G V V + D+ TG SRGF FV +E
Sbjct: 85 PDLK----IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140
Query: 70 AQKAVDRLDGLFLN 83
+ A + +G L+
Sbjct: 141 VEAACQQFNGYELD 154
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 177 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVR 235
Query: 64 YKYADEAQKAVDRLDGLF 81
+ +EAQ+A+ L+ +
Sbjct: 236 FNKREEAQEAISALNNVI 253
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I +D +TG S G+AFV + +AQ A+ +
Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163
Query: 78 DGL 80
+G+
Sbjct: 164 NGI 166
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D L +F KYG +V I RD+ TG RG AFVR
Sbjct: 202 YARPGGESIKDT-NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 260
Query: 64 YKYADEAQKAVDRLDGLF 81
Y +EAQ+A+ L+ +
Sbjct: 261 YNKREEAQEAISALNNVI 278
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 11 DIRDTYSLLVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
D R + + L++N + D +L+ LF G + I RD +TG S G+AFV + +
Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180
Query: 70 AQKAVDRLDGL 80
+Q+A+ L+G+
Sbjct: 181 SQRAIKVLNGI 191
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79
V N+ + D L LF + GKVVD + DR +G SRGF FV Y A+E A++ LDG
Sbjct: 198 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Query: 80 LFLN 83
+ LN
Sbjct: 258 VDLN 261
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PD++ + V N+ F + L LFE+ G V V + D+ TG SRGF FV +E
Sbjct: 85 PDLK----IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140
Query: 70 AQKAVDRLDG 79
+ A + +G
Sbjct: 141 VEAACQQFNG 150
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D L +F KYG +V I RD+ TG RG AFVR
Sbjct: 200 YARPGGESIKDT-NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 258
Query: 64 YKYADEAQKAVDRLDGLF 81
Y +EAQ+A+ L+ +
Sbjct: 259 YNKREEAQEAISALNNVI 276
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 11 DIRDTYSLLVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
D R + + L++N + D +L+ LF G + I RD +TG S G+AFV + +
Sbjct: 119 DPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178
Query: 70 AQKAVDRLDGL 80
+Q+A+ L+G+
Sbjct: 179 SQRAIKVLNGI 189
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D L +F KYG +V I RD+ TG RG AFVR
Sbjct: 185 YARPGGESIKDT-NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVR 243
Query: 64 YKYADEAQKAVDRLDGLF 81
+ +EAQ+A+ L+ +
Sbjct: 244 FNKREEAQEAISALNNVI 261
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I RD +TG S G+AFV + ++Q+A+ L
Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171
Query: 78 DGL 80
+G+
Sbjct: 172 NGI 174
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ + +A KA
Sbjct: 215 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKA 274
Query: 74 VDRLDGLFLNFNFVHEILK 92
++DG F F H IL+
Sbjct: 275 CAKMDG----FGFRHLILR 289
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L LFE++G+V VF+ RDR T ++GFAF+ + +A +A
Sbjct: 207 DLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARA 266
Query: 74 VDRLDGLFLNFNFVHEILK 92
D++DG F + H IL+
Sbjct: 267 CDKMDG----FGYRHLILR 281
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 106 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163
Query: 63 RYKYADEAQKAVDRLDGLFLN 83
++ D++++A++R +G+ L+
Sbjct: 164 YFERIDDSKEAMERANGMELD 184
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 108 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
Query: 63 RYKYADEAQKAVDRLDGLFLN 83
++ D++++A++R +G+ L+
Sbjct: 166 YFERIDDSKEAMERANGMELD 186
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 46/141 (32%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITV 128
+A+ A+ LD RK ++C GR+I +
Sbjct: 63 DAEDALHNLD-------------------RK--WIC------------------GRQIEI 83
Query: 129 QFAK---YGPNAEKIQQGRIV 146
QFA+ PN K ++GR V
Sbjct: 84 QFAQGDRKTPNQMKAKEGRNV 104
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 46/141 (32%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITV 128
+A+ A+ LD RK ++C GR+I +
Sbjct: 63 DAEDALHNLD-------------------RK--WIC------------------GRQIEI 83
Query: 129 QFAK---YGPNAEKIQQGRIV 146
QFA+ PN K ++GR V
Sbjct: 84 QFAQGDRKTPNQMKAKEGRNV 104
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP6 PE=3 SV=2
Length = 485
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + PP+ L V + T +DL +F ++GK++ + RD++TGDS +AF+
Sbjct: 243 FAEVKPPE----NVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIE 298
Query: 64 YKYADEAQKAVDRLDGLFLN-----FNFVHEILKSSLFLRKN 100
Y+ + A ++ G+ ++ +F + K S RK+
Sbjct: 299 YEDKASCEAAYFKMQGVLIDDRRIHVDFSQSVSKLSDVWRKD 340
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + PP+ L V + T +DL +F ++G + I RDR+TGDS +AFV
Sbjct: 234 FAEVKPPE----NVLFVCKLNPVTRDEDLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVE 289
Query: 64 YKYADEAQKAVDRLDGLFLNFNFVH 88
++ ++A++A ++ + ++ +H
Sbjct: 290 FENKEDAEEAYFKMQSVLIDDRRIH 314
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L V + + TT L FE YG + + + ++R+G RG+AF+ Y++ + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 77 LDG 79
DG
Sbjct: 164 ADG 166
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L V + + TT L FE YG + + + +R+G RG+AF+ Y++ + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 77 LDG 79
DG
Sbjct: 164 ADG 166
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L V + + TT L FE YG + + + +R+G RG+AF+ Y++ + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 77 LDG 79
DG
Sbjct: 164 ADG 166
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L V + + TT L FE YG + + + +R+G RG+AF+ Y++ + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 77 LDG 79
DG
Sbjct: 164 ADG 166
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L + I + T+ L FE YG + + + D+ +G +G+AF+ Y++ + A
Sbjct: 103 TLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKH 162
Query: 77 LDG 79
DG
Sbjct: 163 ADG 165
>sp|Q5UPJ3|YL116_MIMIV Uncharacterized protein L116 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L116 PE=3 SV=1
Length = 563
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 151 KSKGRSRSRSP-RPRYRDEHRDKDYRRRSRSRSRERY---DRDRYRSKERDHRRR---SR 203
+S RSR RSP R YR R YR ++S R Y +R RYRS ER H R SR
Sbjct: 170 RSPERSRYRSPERSHYRSPDRSH-YRSHNKSTERSHYRSTERSRYRSPERSHYRSPEISR 228
Query: 204 SRSASPDRHKNHGRGKYDEERRSRSRSYESASPPRHSPNSKRSPSPRKTHKG-EINPDER 262
RS R K+ GR + SR +S + + ++S PR K E +PDE
Sbjct: 229 KRSRDESREKSLGRSRKMSRDESREKSLNESHKRSRDESQEKSYEPRPAKKLREKSPDEH 288
Query: 263 SPALKRVSPDGRRSVSRSL 281
+ SP+ + +++ L
Sbjct: 289 QEKHQEKSPEKQVEITKPL 307
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 60/122 (49%), Gaps = 23/122 (18%)
Query: 120 VVDGREITVQFAKYGPNAEKIQQGRIVESSSKSKGRSRSRSP-RPRYRDEHRDKDYRRRS 178
+D +++ V F ++GR E SS+ RSR RSP R RYR R R RS
Sbjct: 110 TMDDKQVVVTFI--------TERGRSCELSSE---RSRYRSPERSRYRSPERS---RYRS 155
Query: 179 RSRSRERY-DRDRYRSKERD-HRRRSRSRSASPDR------HKNHGRGKYDEERRSRSRS 230
RSR R +R RYRS ER +R RS SPDR +K+ R Y RSR RS
Sbjct: 156 PERSRYRSPERSRYRSPERSRYRSPERSHYRSPDRSHYRSHNKSTERSHYRSTERSRYRS 215
Query: 231 YE 232
E
Sbjct: 216 PE 217
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V + + T + L E +G + + +DR TG+S+G+AF Y+ A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 78 DGLFLN 83
+G+ +
Sbjct: 421 NGIKMG 426
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 149 SSKSKGRSRSRSPRPRYRDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRRR----SRS 204
+S+SK R R + R +D RD + RRSR R E+ ++R R K+RDHR R SR
Sbjct: 48 TSRSKDREREKG---RDKDRERDSEVSRRSRDRDGEK-SKERSRDKDRDHRERHHRSSRH 103
Query: 205 RSAS 208
R S
Sbjct: 104 RDHS 107
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V + + T + L E +G + + +DR TG+S+G+AF Y+ A L
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 78 DGL 80
+G+
Sbjct: 421 NGI 423
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65
K GPP +R Y L+V N++ R + DL + G+V ++R + ++
Sbjct: 101 KYGPP-VRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-----GVIEFR 154
Query: 66 YADEAQKAVDRLDGLFLN 83
+ ++A+D+LDG +N
Sbjct: 155 SYSDMKRALDKLDGTEIN 172
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V + + T + L E +G + + +DR TG+S+G+AF Y+ + A L
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 78 DGL 80
+G+
Sbjct: 420 NGI 422
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 162 RPRYRDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRRR-------SRSRSASPDRHKN 214
R R RD+ R+KD R + + ++RE+ D+++ R K+RD R R R R+K
Sbjct: 886 RERDRDKGREKD-RDKEQVKTREK-DQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKE 943
Query: 215 HGRGKYDEERRSRSRSYESASPPRHSPNSKRSPSPRKTHKGEINPDERSPALKRVSPDGR 274
K E+RSR S PR+ SK P R HK N DE+ + DG
Sbjct: 944 LTEDKQAPEQRSRPNSPRVKQEPRNGEESKIKPE-RSVHKNSNNKDEKRGGENKNQLDGH 1002
Query: 275 R 275
+
Sbjct: 1003 K 1003
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 35 LFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL 80
L E +G + + +DR TG+S+G+AF Y+ + A L+G+
Sbjct: 353 LLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGI 398
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 35 LFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL 80
L E +G + + +DR TG+S+G+AF Y+ A L+G+
Sbjct: 394 LLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGI 439
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKA 73
+L V + + TT L FE YG + + I ++ + G RG+AF+ Y++ + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSA 163
Query: 74 VDRLDG 79
DG
Sbjct: 164 YKHADG 169
>sp|B3KS81|SRRM5_HUMAN Serine/arginine repetitive matrix protein 5 OS=Homo sapiens
GN=SRRM5 PE=1 SV=3
Length = 715
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 170 RDKDYRRRSRSRSRERYDRD-RYRSKERDHRRRSRSRSASPDRHKNHGRGKYDEERRSRS 228
+++D+RR SRS S+ER R R SKERDHRR SRS S +R + R E RS+S
Sbjct: 493 KERDHRR-SRSPSKERQCRQSRSSSKERDHRR---SRSPSKERQRRQSRSPNKERDRSQS 548
Query: 229 RS 230
RS
Sbjct: 549 RS 550
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65
K GPP +R + L+V N++ R + DL + G+V ++R + ++
Sbjct: 101 KYGPP-VRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-----GVIEFR 154
Query: 66 YADEAQKAVDRLDGLFLN 83
+ ++A+D+LDG +N
Sbjct: 155 SYSDMKRALDKLDGTEIN 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,897,652
Number of Sequences: 539616
Number of extensions: 4701248
Number of successful extensions: 46723
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 886
Number of HSP's that attempted gapping in prelim test: 21621
Number of HSP's gapped (non-prelim): 10456
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)