Query 022930
Match_columns 290
No_of_seqs 347 out of 2459
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f25_A Polyadenylate-binding p 99.9 5.5E-25 1.9E-29 165.4 8.3 109 14-124 4-112 (115)
2 4f02_A Polyadenylate-binding p 99.9 2.4E-24 8.1E-29 179.4 12.8 120 12-137 12-131 (213)
3 3pgw_S U1-70K; protein-RNA com 99.9 1.6E-23 5.4E-28 191.6 16.4 82 13-94 100-181 (437)
4 1l3k_A Heterogeneous nuclear r 99.9 1.8E-23 6.1E-28 171.3 12.2 128 7-137 5-132 (196)
5 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-23 5.7E-28 152.9 10.1 81 13-93 17-97 (99)
6 1fxl_A Paraneoplastic encephal 99.9 1E-22 3.5E-27 162.2 13.5 115 15-137 2-116 (167)
7 1b7f_A Protein (SXL-lethal pro 99.9 6.3E-23 2.2E-27 163.8 11.3 116 14-137 2-117 (168)
8 2qfj_A FBP-interacting repress 99.9 9E-23 3.1E-27 169.6 12.2 124 14-137 27-153 (216)
9 3nmr_A Cugbp ELAV-like family 99.9 3E-22 1E-26 160.8 12.8 117 14-137 2-123 (175)
10 3tyt_A Heterogeneous nuclear r 99.9 1.8E-22 6.3E-27 166.8 10.7 118 14-136 3-150 (205)
11 2cjk_A Nuclear polyadenylated 99.9 3.3E-22 1.1E-26 159.5 11.6 114 14-137 2-115 (167)
12 3md3_A Nuclear and cytoplasmic 99.9 3.1E-22 1E-26 159.3 11.1 115 16-137 1-115 (166)
13 2lkz_A RNA-binding protein 5; 99.9 6.8E-23 2.3E-27 148.2 6.5 84 9-92 3-92 (95)
14 3s8s_A Histone-lysine N-methyl 99.9 4.4E-22 1.5E-26 148.1 10.7 80 15-94 6-85 (110)
15 2lxi_A RNA-binding protein 10; 99.9 6.4E-23 2.2E-27 147.4 4.4 81 15-95 1-83 (91)
16 1x5u_A Splicing factor 3B subu 99.9 1.5E-21 5E-26 144.1 11.4 88 7-94 7-94 (105)
17 2dnm_A SRP46 splicing factor; 99.9 8.4E-22 2.9E-26 144.9 9.4 88 7-94 5-92 (103)
18 2cqc_A Arginine/serine-rich sp 99.9 1.5E-21 5.1E-26 141.3 10.6 86 7-92 7-92 (95)
19 2adc_A Polypyrimidine tract-bi 99.9 1.8E-21 6.1E-26 163.7 11.9 120 12-136 31-179 (229)
20 1x4h_A RNA-binding protein 28; 99.9 2.6E-21 8.9E-26 144.2 11.4 89 6-94 6-100 (111)
21 2dgo_A Cytotoxic granule-assoc 99.9 3.6E-21 1.2E-25 144.4 11.4 88 7-94 7-94 (115)
22 2dgs_A DAZ-associated protein 99.9 4E-21 1.4E-25 140.2 11.2 84 10-94 5-88 (99)
23 1whw_A Hypothetical protein ri 99.9 2.9E-21 1E-25 140.9 10.4 84 11-94 4-87 (99)
24 2e5h_A Zinc finger CCHC-type a 99.9 2.8E-21 9.6E-26 139.6 10.2 84 9-92 10-93 (94)
25 1x5s_A Cold-inducible RNA-bind 99.9 2.5E-21 8.4E-26 142.1 10.0 86 9-94 6-91 (102)
26 2cq0_A Eukaryotic translation 99.9 2.3E-21 8E-26 142.5 9.8 86 9-94 9-94 (103)
27 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.8E-21 9.5E-26 137.5 9.9 81 13-93 4-84 (87)
28 2cph_A RNA binding motif prote 99.9 4.5E-21 1.5E-25 141.9 11.3 88 7-94 7-96 (107)
29 3ulh_A THO complex subunit 4; 99.9 2.9E-21 1E-25 143.0 10.3 84 8-92 22-105 (107)
30 3sde_A Paraspeckle component 1 99.9 3.1E-21 1.1E-25 165.4 12.0 115 3-137 10-124 (261)
31 1p27_B RNA-binding protein 8A; 99.9 3.3E-21 1.1E-25 142.4 10.3 85 9-93 17-101 (106)
32 2la6_A RNA-binding protein FUS 99.9 4.1E-21 1.4E-25 140.1 10.7 86 7-92 5-98 (99)
33 3md1_A Nuclear and cytoplasmic 99.9 3.4E-21 1.2E-25 135.8 9.8 79 15-93 1-79 (83)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.1E-21 1.1E-25 136.6 9.4 81 12-92 4-84 (85)
35 3ex7_B RNA-binding protein 8A; 99.8 3.4E-21 1.2E-25 146.9 10.1 86 7-92 14-99 (126)
36 3p5t_L Cleavage and polyadenyl 99.8 1E-21 3.6E-26 140.8 6.7 79 16-94 2-82 (90)
37 2dnz_A Probable RNA-binding pr 99.8 5.6E-21 1.9E-25 138.3 10.6 81 14-94 4-84 (95)
38 3ns6_A Eukaryotic translation 99.8 1.6E-21 5.6E-26 142.6 7.7 82 14-95 5-93 (100)
39 2cpe_A RNA-binding protein EWS 99.8 3.5E-21 1.2E-25 144.0 9.6 85 10-94 10-102 (113)
40 1oo0_B CG8781-PA, drosophila Y 99.8 4.1E-21 1.4E-25 142.9 9.8 87 7-93 18-104 (110)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.4E-21 8.3E-26 142.1 8.3 85 10-94 7-91 (102)
42 2dgp_A Bruno-like 4, RNA bindi 99.8 4.8E-21 1.7E-25 141.5 9.8 86 8-93 6-94 (106)
43 2jrs_A RNA-binding protein 39; 99.8 6.3E-21 2.1E-25 141.4 10.1 87 7-93 18-104 (108)
44 2cpz_A CUG triplet repeat RNA- 99.8 5.5E-21 1.9E-25 143.4 9.9 84 11-94 21-104 (115)
45 3pgw_A U1-A; protein-RNA compl 99.8 9.9E-21 3.4E-25 163.9 13.0 82 10-94 4-89 (282)
46 2do4_A Squamous cell carcinoma 99.8 1E-20 3.5E-25 138.3 11.1 83 10-93 12-94 (100)
47 2x1f_A MRNA 3'-END-processing 99.8 7.2E-21 2.5E-25 138.0 10.0 80 15-94 2-81 (96)
48 1x4e_A RNA binding motif, sing 99.8 2.5E-21 8.4E-26 137.2 7.2 79 13-91 3-81 (85)
49 2hvz_A Splicing factor, argini 99.8 8.4E-22 2.9E-26 144.4 4.9 98 16-118 1-100 (101)
50 2div_A TRNA selenocysteine ass 99.8 7.3E-21 2.5E-25 138.8 9.7 81 12-92 6-91 (99)
51 1s79_A Lupus LA protein; RRM, 99.8 7.4E-21 2.5E-25 139.7 9.8 82 11-94 7-88 (103)
52 2kxn_B Transformer-2 protein h 99.8 6.6E-21 2.3E-25 145.8 9.9 85 9-93 40-124 (129)
53 2ywk_A Putative RNA-binding pr 99.8 6.4E-21 2.2E-25 138.0 9.2 84 8-92 9-92 (95)
54 2cqd_A RNA-binding region cont 99.8 1.1E-20 3.7E-25 142.0 10.6 87 7-94 9-95 (116)
55 2dng_A Eukaryotic translation 99.8 1E-20 3.5E-25 139.0 10.3 86 7-94 7-92 (103)
56 2khc_A Testis-specific RNP-typ 99.8 9.1E-21 3.1E-25 142.8 10.2 83 10-92 35-117 (118)
57 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-20 4.8E-25 135.3 10.8 84 9-94 2-85 (92)
58 2d9p_A Polyadenylate-binding p 99.8 1.2E-20 4.2E-25 138.6 10.5 83 10-94 10-92 (103)
59 2dnh_A Bruno-like 5, RNA bindi 99.8 2.1E-20 7.2E-25 137.8 11.7 82 12-94 12-96 (105)
60 3s7r_A Heterogeneous nuclear r 99.8 9.6E-21 3.3E-25 134.8 9.5 81 9-90 5-85 (87)
61 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-20 3.5E-25 139.3 10.0 85 8-94 8-93 (104)
62 3beg_B Splicing factor, argini 99.8 2.2E-21 7.5E-26 145.6 6.2 76 6-88 7-82 (115)
63 2fy1_A RNA-binding motif prote 99.8 1E-20 3.6E-25 142.1 9.6 81 11-92 3-83 (116)
64 2dhg_A TRNA selenocysteine ass 99.8 1.6E-20 5.6E-25 138.2 10.4 84 10-94 4-89 (104)
65 2do0_A HnRNP M, heterogeneous 99.8 2.4E-20 8.2E-25 139.6 11.5 84 8-92 8-91 (114)
66 2dh8_A DAZ-associated protein 99.8 1.1E-20 3.8E-25 139.4 9.3 86 8-94 9-94 (105)
67 1x5t_A Splicing factor 3B subu 99.8 5.7E-21 2E-25 138.5 7.4 81 14-94 4-85 (96)
68 1x4c_A Splicing factor, argini 99.8 1.8E-20 6.1E-25 139.0 10.2 72 6-84 6-77 (108)
69 3n9u_C Cleavage and polyadenyl 99.8 1.2E-20 4.1E-25 149.0 9.6 81 14-94 54-136 (156)
70 1fje_B Nucleolin RBD12, protei 99.8 1.8E-21 6.1E-26 156.6 5.0 120 10-137 8-127 (175)
71 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-20 8.6E-25 139.7 10.8 106 13-137 6-111 (115)
72 3smz_A Protein raver-1, ribonu 99.8 3.9E-20 1.3E-24 160.3 13.6 119 14-137 94-213 (284)
73 2cpf_A RNA binding motif prote 99.8 9.1E-21 3.1E-25 138.0 8.1 81 14-94 4-87 (98)
74 2cq3_A RNA-binding protein 9; 99.8 3.9E-20 1.3E-24 135.9 11.5 86 7-94 7-92 (103)
75 1p1t_A Cleavage stimulation fa 99.8 3.1E-21 1E-25 142.1 5.6 85 10-94 3-87 (104)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-20 5.8E-25 149.8 10.4 86 8-93 65-150 (165)
77 2ek1_A RNA-binding protein 12; 99.8 5.4E-21 1.9E-25 138.4 6.4 79 14-92 14-92 (95)
78 1x4a_A Splicing factor, argini 99.8 4.4E-20 1.5E-24 137.1 11.4 85 7-94 14-98 (109)
79 2cqp_A RNA-binding protein 12; 99.8 1E-20 3.4E-25 137.8 7.7 82 11-92 11-92 (98)
80 2cqi_A Nucleolysin TIAR; RNA r 99.8 4E-20 1.4E-24 135.8 10.9 84 9-94 9-92 (103)
81 4a8x_A RNA-binding protein wit 99.8 1.5E-20 5.1E-25 134.0 8.0 79 14-92 3-82 (88)
82 1sjq_A Polypyrimidine tract-bi 99.8 2.2E-20 7.7E-25 136.5 9.1 76 13-94 14-91 (105)
83 1qm9_A Polypyrimidine tract-bi 99.8 1.5E-20 5.2E-25 154.3 9.1 118 14-136 2-148 (198)
84 2cq4_A RNA binding motif prote 99.8 8.1E-21 2.8E-25 142.2 6.8 81 14-95 24-104 (114)
85 2m2b_A RNA-binding protein 10; 99.8 1.4E-20 4.9E-25 144.4 8.3 85 9-94 17-107 (131)
86 1wg5_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 136.5 10.0 83 9-93 9-92 (104)
87 3ucg_A Polyadenylate-binding p 99.8 2.6E-20 9.1E-25 133.0 9.0 79 15-94 6-84 (89)
88 1wez_A HnRNP H', FTP-3, hetero 99.8 1.5E-20 5.1E-25 137.9 7.5 81 9-92 9-89 (102)
89 1u6f_A Tcubp1, RNA-binding pro 99.8 3.9E-20 1.3E-24 143.4 10.2 83 11-93 38-120 (139)
90 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.2E-20 1.4E-24 146.1 10.5 81 12-92 36-116 (156)
91 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-20 1.4E-24 134.0 9.4 80 11-93 5-88 (96)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.6E-20 5.6E-25 137.2 7.3 82 9-92 13-95 (100)
93 2krb_A Eukaryotic translation 99.8 2.3E-20 7.7E-25 131.1 7.7 73 15-89 1-80 (81)
94 2wbr_A GW182, gawky, LD47780P; 99.8 3.1E-20 1.1E-24 129.9 8.2 72 15-92 7-78 (89)
95 2kt5_A RNA and export factor-b 99.8 7.5E-20 2.6E-24 139.0 11.0 84 10-94 30-113 (124)
96 2cqg_A TDP-43, TAR DNA-binding 99.8 9.5E-20 3.2E-24 133.8 11.1 85 8-94 8-92 (103)
97 2mss_A Protein (musashi1); RNA 99.8 1.9E-20 6.6E-25 129.3 6.8 74 17-91 1-74 (75)
98 2g4b_A Splicing factor U2AF 65 99.8 3.4E-20 1.2E-24 148.4 9.2 110 13-137 2-122 (172)
99 2hgl_A HNRPF protein, heteroge 99.8 1.9E-20 6.4E-25 144.1 7.3 84 9-94 38-124 (136)
100 1wex_A Hypothetical protein (r 99.8 7E-20 2.4E-24 134.5 10.0 82 7-94 7-90 (104)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.9E-20 2.4E-24 142.0 10.5 82 10-91 58-139 (140)
102 2lmi_A GRSF-1, G-rich sequence 99.8 2.3E-20 7.8E-25 138.2 7.3 86 7-94 3-91 (107)
103 2db1_A Heterogeneous nuclear r 99.8 3.3E-20 1.1E-24 139.8 8.0 84 9-94 11-97 (118)
104 2ghp_A U4/U6 snRNA-associated 99.8 8.3E-20 2.8E-24 158.9 11.3 110 9-136 35-145 (292)
105 2nlw_A Eukaryotic translation 99.8 5E-20 1.7E-24 135.9 8.4 82 9-92 9-97 (105)
106 2dgw_A Probable RNA-binding pr 99.8 8E-20 2.7E-24 131.1 9.2 81 10-93 5-85 (91)
107 1wel_A RNA-binding protein 12; 99.8 1.4E-20 4.8E-25 143.1 5.4 84 10-94 20-103 (124)
108 2cpi_A CCR4-NOT transcription 99.8 5.3E-20 1.8E-24 137.1 8.4 84 11-94 11-100 (111)
109 2lea_A Serine/arginine-rich sp 99.8 1.5E-20 5.1E-25 145.0 5.6 86 8-93 40-125 (135)
110 2cpy_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 138.2 7.9 82 11-94 11-93 (114)
111 2ghp_A U4/U6 snRNA-associated 99.8 6.8E-20 2.3E-24 159.4 10.3 122 14-137 116-239 (292)
112 2dnn_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 136.2 8.2 83 9-94 10-92 (109)
113 2cq1_A PTB-like protein L; RRM 99.8 1.3E-19 4.6E-24 132.2 10.1 79 10-94 10-90 (101)
114 3r27_A HnRNP L, heterogeneous 99.8 7.4E-20 2.5E-24 132.4 8.6 77 12-94 18-96 (100)
115 2yh0_A Splicing factor U2AF 65 99.8 7.2E-20 2.5E-24 149.9 9.7 117 14-137 3-142 (198)
116 2ytc_A PRE-mRNA-splicing facto 99.8 1.5E-19 5.3E-24 127.9 9.9 80 7-92 4-84 (85)
117 2dis_A Unnamed protein product 99.8 9.5E-20 3.3E-24 135.2 9.2 82 13-94 6-91 (109)
118 1x5o_A RNA binding motif, sing 99.8 1.7E-19 5.8E-24 135.0 10.5 76 10-86 20-95 (114)
119 1x4d_A Matrin 3; structural ge 99.8 5.7E-20 2E-24 134.2 7.6 77 12-94 12-91 (102)
120 2f3j_A RNA and export factor b 99.8 1.1E-19 3.7E-24 146.6 9.9 84 11-95 84-167 (177)
121 2rs2_A Musashi-1, RNA-binding 99.8 6.3E-20 2.2E-24 136.2 7.9 82 11-93 21-102 (109)
122 2ki2_A SS-DNA binding protein 99.8 2.2E-20 7.6E-25 133.8 5.2 78 16-94 2-79 (90)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.7E-20 9.1E-25 129.3 5.4 75 16-91 1-75 (77)
124 2ad9_A Polypyrimidine tract-bi 99.8 1.2E-19 4.1E-24 135.9 9.2 78 11-94 27-106 (119)
125 2cpj_A Non-POU domain-containi 99.8 1.2E-19 4.2E-24 132.2 8.9 82 7-94 7-88 (99)
126 3q2s_C Cleavage and polyadenyl 99.8 6E-20 2.1E-24 154.1 8.2 81 14-94 67-149 (229)
127 3smz_A Protein raver-1, ribonu 99.8 2.6E-19 8.8E-24 155.1 12.1 103 14-137 21-123 (284)
128 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.9E-24 142.4 10.4 84 11-94 66-149 (158)
129 1why_A Hypothetical protein ri 99.8 3.4E-19 1.2E-23 129.4 10.8 78 10-93 12-91 (97)
130 2dnq_A RNA-binding protein 4B; 99.8 2.9E-19 9.9E-24 127.9 10.2 76 11-94 4-79 (90)
131 2a3j_A U1 small nuclear ribonu 99.8 1.8E-19 6.3E-24 137.0 9.6 83 9-94 23-109 (127)
132 2dgu_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 132.3 9.1 78 7-92 3-80 (103)
133 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4E-24 137.9 8.3 78 15-93 36-113 (124)
134 1x4b_A Heterogeneous nuclear r 99.8 1E-19 3.5E-24 136.6 7.5 80 14-94 26-105 (116)
135 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-19 4.5E-24 134.5 7.5 79 11-93 24-103 (111)
136 2err_A Ataxin-2-binding protei 99.8 1.6E-19 5.4E-24 134.1 7.9 82 10-93 24-105 (109)
137 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-20 1.1E-24 135.9 3.8 80 13-94 15-94 (101)
138 2fc9_A NCL protein; structure 99.8 3E-19 1E-23 130.7 9.0 81 10-94 10-90 (101)
139 1iqt_A AUF1, heterogeneous nuc 99.8 8.2E-20 2.8E-24 126.1 5.2 74 17-91 1-74 (75)
140 2dgt_A RNA-binding protein 30; 99.8 5.4E-19 1.8E-23 127.1 9.5 78 9-94 4-81 (92)
141 2e5j_A Methenyltetrahydrofolat 99.8 5.3E-19 1.8E-23 128.4 8.9 78 11-93 15-92 (97)
142 1nu4_A U1A RNA binding domain; 99.8 1.7E-19 5.8E-24 130.9 6.0 82 10-94 3-88 (97)
143 2fc8_A NCL protein; structure 99.8 5.6E-19 1.9E-23 129.4 8.7 83 9-94 9-91 (102)
144 1whx_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 132.6 7.6 77 12-94 7-83 (111)
145 2cpx_A Hypothetical protein FL 99.8 7.9E-20 2.7E-24 137.0 4.1 84 11-94 21-104 (115)
146 2hgm_A HNRPF protein, heteroge 99.8 4.4E-19 1.5E-23 134.4 8.2 81 10-93 37-119 (126)
147 2hgn_A Heterogeneous nuclear r 99.8 1.2E-19 4E-24 140.2 4.9 80 11-93 42-121 (139)
148 2dha_A FLJ20171 protein; RRM d 99.8 2.6E-19 8.9E-24 135.4 6.7 79 13-93 21-103 (123)
149 2xnq_A Nuclear polyadenylated 99.8 1E-18 3.4E-23 126.9 9.5 76 10-93 17-93 (97)
150 2dnp_A RNA-binding protein 14; 99.8 8.3E-19 2.9E-23 125.5 8.8 75 12-94 6-80 (90)
151 1x4g_A Nucleolysin TIAR; struc 99.8 8.3E-19 2.8E-23 130.1 9.0 76 13-94 23-98 (109)
152 2jvo_A Nucleolar protein 3; nu 99.8 7.4E-19 2.5E-23 130.2 8.4 77 10-94 26-102 (108)
153 2la4_A Nuclear and cytoplasmic 99.8 8.6E-19 2.9E-23 128.2 8.7 73 14-92 26-98 (101)
154 2lcw_A RNA-binding protein FUS 99.6 2.3E-20 7.9E-25 140.2 0.0 84 11-94 3-94 (116)
155 2xs2_A Deleted in azoospermia- 99.8 2.3E-19 7.9E-24 131.5 5.2 82 9-93 3-84 (102)
156 1x4f_A Matrin 3; structural ge 99.8 3.1E-19 1.1E-23 132.2 5.8 77 12-94 22-101 (112)
157 2cpd_A Apobec-1 stimulating pr 99.8 2.9E-18 9.9E-23 124.9 10.9 77 10-94 10-88 (99)
158 2kvi_A Nuclear polyadenylated 99.8 1.1E-18 3.8E-23 126.4 8.5 75 11-93 6-81 (96)
159 2j8a_A Histone-lysine N-methyl 99.8 4.2E-19 1.5E-23 132.3 6.2 79 16-94 3-95 (136)
160 1fjc_A Nucleolin RBD2, protein 99.8 4.4E-19 1.5E-23 128.5 5.7 82 7-93 8-89 (96)
161 2dnl_A Cytoplasmic polyadenyla 99.8 1E-18 3.5E-23 130.8 7.8 76 11-89 4-82 (114)
162 2cq2_A Hypothetical protein LO 99.8 9.7E-19 3.3E-23 129.6 7.3 75 12-92 22-103 (114)
163 2e5g_A U6 snRNA-specific termi 99.8 3.1E-18 1.1E-22 123.6 9.5 76 11-92 4-79 (94)
164 2e44_A Insulin-like growth fac 99.8 2.7E-18 9.3E-23 124.3 8.8 81 10-94 10-91 (96)
165 1wf1_A RNA-binding protein RAL 99.8 2.4E-18 8.1E-23 127.9 8.5 74 12-93 24-98 (110)
166 2cqh_A IGF-II mRNA-binding pro 99.7 9.3E-19 3.2E-23 126.0 5.7 77 11-94 4-82 (93)
167 3md3_A Nuclear and cytoplasmic 99.7 7.8E-18 2.7E-22 133.6 11.2 83 10-92 82-164 (166)
168 2i2y_A Fusion protein consists 99.7 5.8E-18 2E-22 132.9 9.9 80 9-93 67-146 (150)
169 3egn_A RNA-binding protein 40; 99.7 4.9E-19 1.7E-23 137.9 3.4 83 12-94 42-129 (143)
170 2e5i_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 126.4 10.4 77 12-94 22-101 (124)
171 2diu_A KIAA0430 protein; struc 99.7 9E-18 3.1E-22 118.5 9.1 71 14-94 7-83 (96)
172 1x5p_A Negative elongation fac 99.7 1.7E-17 5.8E-22 120.4 10.2 77 10-94 10-86 (97)
173 2hzc_A Splicing factor U2AF 65 99.7 6.2E-18 2.1E-22 120.0 7.8 71 13-90 4-85 (87)
174 1sjr_A Polypyrimidine tract-bi 99.7 8.9E-18 3E-22 132.0 9.2 81 10-94 41-123 (164)
175 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 126.8 8.8 79 11-94 24-105 (130)
176 2qfj_A FBP-interacting repress 99.7 1.8E-17 6.2E-22 137.4 10.5 82 13-94 123-204 (216)
177 2g4b_A Splicing factor U2AF 65 99.7 1.7E-17 5.8E-22 132.6 9.9 80 13-92 92-171 (172)
178 1wg1_A KIAA1579 protein, homol 99.7 6.2E-18 2.1E-22 120.4 6.1 72 14-92 4-75 (88)
179 2yh0_A Splicing factor U2AF 65 99.7 3.1E-17 1.1E-21 134.1 9.8 81 13-93 112-192 (198)
180 3d2w_A TAR DNA-binding protein 99.7 2.9E-17 1E-21 117.2 8.2 74 11-93 7-82 (89)
181 1b7f_A Protein (SXL-lethal pro 99.7 7.1E-17 2.4E-21 128.4 11.1 80 12-91 86-167 (168)
182 4f02_A Polyadenylate-binding p 99.7 4.3E-17 1.5E-21 135.3 9.6 79 14-94 102-180 (213)
183 2cjk_A Nuclear polyadenylated 99.7 1.9E-17 6.3E-22 131.8 7.0 78 15-93 87-164 (167)
184 1l3k_A Heterogeneous nuclear r 99.7 5E-17 1.7E-21 132.7 9.5 81 13-94 102-182 (196)
185 2pe8_A Splicing factor 45; RRM 99.7 1.2E-16 4.3E-21 117.3 10.5 82 13-94 6-93 (105)
186 2bz2_A Negative elongation fac 99.7 4.8E-17 1.7E-21 122.8 7.9 76 11-94 35-110 (121)
187 1fxl_A Paraneoplastic encephal 99.7 1.1E-16 3.7E-21 127.1 10.3 74 13-86 86-159 (167)
188 3nmr_A Cugbp ELAV-like family 99.7 1.6E-16 5.5E-21 127.1 10.0 78 13-91 93-173 (175)
189 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.6E-21 129.7 9.3 77 15-93 109-185 (193)
190 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-16 4.2E-21 133.7 8.2 78 11-94 130-228 (240)
191 1wf0_A TDP-43, TAR DNA-binding 99.7 4.8E-17 1.6E-21 115.8 3.8 72 14-92 4-75 (88)
192 1fje_B Nucleolin RBD12, protei 99.6 5.6E-16 1.9E-20 124.2 7.4 78 11-93 95-172 (175)
193 2dit_A HIV TAT specific factor 99.6 1.9E-15 6.4E-20 112.5 8.9 81 9-93 9-100 (112)
194 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 110.6 8.8 81 14-94 4-96 (105)
195 3pgw_A U1-A; protein-RNA compl 99.6 2.2E-15 7.4E-20 130.2 9.8 74 14-92 206-280 (282)
196 3tyt_A Heterogeneous nuclear r 99.6 1.6E-15 5.3E-20 125.1 8.1 71 14-86 122-194 (205)
197 1jmt_A Splicing factor U2AF 35 99.6 5.3E-16 1.8E-20 113.8 4.0 73 19-92 19-103 (104)
198 1qm9_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 120.8 9.4 76 13-93 118-195 (198)
199 2adc_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 123.3 9.6 75 14-93 150-226 (229)
200 3ue2_A Poly(U)-binding-splicin 99.6 5.1E-15 1.7E-19 110.8 7.7 81 14-94 19-108 (118)
201 3sde_A Paraspeckle component 1 99.6 8.6E-15 2.9E-19 125.2 9.9 79 14-93 95-177 (261)
202 3tht_A Alkylated DNA repair pr 99.5 1.2E-14 4E-19 128.0 9.1 66 12-83 15-82 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.2E-13 7.4E-18 98.8 10.0 71 15-92 10-87 (100)
204 3s6e_A RNA-binding protein 39; 99.4 3.3E-13 1.1E-17 100.2 8.7 77 14-94 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 1.2E-12 4.2E-17 97.4 9.3 75 9-89 12-90 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 5.2E-12 1.8E-16 88.3 6.6 70 16-94 8-85 (91)
207 3pgw_S U1-70K; protein-RNA com 99.2 2.9E-11 1E-15 110.4 8.1 105 32-136 9-129 (437)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 4.5E-11 1.5E-15 83.9 4.0 69 16-93 16-93 (95)
209 3dxb_A Thioredoxin N-terminall 99.1 2.9E-10 9.9E-15 94.5 8.3 67 28-94 142-212 (222)
210 2kn4_A Immunoglobulin G-bindin 98.9 9.4E-10 3.2E-14 86.4 6.0 92 44-137 2-98 (158)
211 2i2y_A Fusion protein consists 98.8 3E-09 1E-13 82.8 4.7 84 53-137 9-101 (150)
212 2l9w_A U4/U6 snRNA-associated- 98.8 1.8E-08 6.2E-13 72.0 7.4 71 14-90 20-95 (117)
213 1wey_A Calcipressin 1; structu 98.2 1.6E-06 5.5E-11 61.8 4.8 73 16-94 6-83 (104)
214 1wwh_A Nucleoporin 35, nucleop 98.2 4.6E-06 1.6E-10 61.1 6.9 68 11-86 20-87 (119)
215 1uw4_A UPF3X; nonsense mediate 98.1 9.7E-06 3.3E-10 56.8 7.5 68 16-83 2-71 (91)
216 1whv_A Poly(A)-specific ribonu 98.1 1.1E-05 3.6E-10 56.6 7.5 56 14-78 15-70 (100)
217 3ctr_A Poly(A)-specific ribonu 98.0 7.8E-06 2.7E-10 57.5 5.4 54 16-78 7-60 (101)
218 2dhx_A Poly (ADP-ribose) polym 98.0 9.2E-05 3.1E-09 52.5 9.9 67 14-89 7-78 (104)
219 2lea_A Serine/arginine-rich sp 97.6 2.3E-05 7.9E-10 59.5 2.8 71 58-137 5-75 (135)
220 2l08_A Regulator of nonsense t 97.6 5.5E-05 1.9E-09 53.3 4.2 69 15-83 9-79 (97)
221 3p3d_A Nucleoporin 53; structu 97.5 9.1E-05 3.1E-09 55.0 3.8 75 14-90 6-94 (132)
222 1rk8_A CG8781-PA, CG8781-PA pr 97.3 0.00015 5E-09 56.9 3.6 76 62-137 11-100 (165)
223 3pq1_A Poly(A) RNA polymerase; 97.3 0.00013 4.5E-09 66.3 3.4 55 15-75 53-107 (464)
224 4fxv_A ELAV-like protein 1; RN 96.2 0.0028 9.5E-08 45.0 3.0 30 108-137 18-47 (99)
225 2hgn_A Heterogeneous nuclear r 96.1 0.0019 6.5E-08 49.1 1.7 72 58-136 2-73 (139)
226 1sjq_A Polypyrimidine tract-bi 96.0 0.0033 1.1E-07 45.2 2.5 32 106-137 13-44 (105)
227 1wf0_A TDP-43, TAR DNA-binding 96.0 0.0045 1.5E-07 42.6 3.2 30 108-137 4-33 (88)
228 3d2w_A TAR DNA-binding protein 96.0 0.0043 1.5E-07 43.0 3.0 32 106-137 8-39 (89)
229 2hgl_A HNRPF protein, heteroge 95.8 0.0061 2.1E-07 46.0 3.4 69 58-135 2-70 (136)
230 2lkz_A RNA-binding protein 5; 95.8 0.0068 2.3E-07 42.7 3.4 31 106-136 6-36 (95)
231 2ad9_A Polypyrimidine tract-bi 95.8 0.0066 2.3E-07 44.7 3.4 32 106-137 28-59 (119)
232 4f25_A Polyadenylate-binding p 95.8 0.0058 2E-07 44.5 3.1 29 109-137 5-33 (115)
233 1x4d_A Matrin 3; structural ge 95.8 0.0047 1.6E-07 44.2 2.5 32 106-137 12-44 (102)
234 1wex_A Hypothetical protein (r 95.6 0.0069 2.4E-07 43.4 3.0 31 107-137 13-43 (104)
235 3d45_A Poly(A)-specific ribonu 95.6 0.034 1.2E-06 51.4 8.1 57 14-79 439-495 (507)
236 3r27_A HnRNP L, heterogeneous 95.6 0.0088 3E-07 42.5 3.3 32 106-137 18-49 (100)
237 2cq1_A PTB-like protein L; RRM 95.6 0.0073 2.5E-07 43.0 2.9 32 106-137 12-43 (101)
238 1x4c_A Splicing factor, argini 95.6 0.0081 2.8E-07 43.1 3.2 30 107-136 13-42 (108)
239 2dgt_A RNA-binding protein 30; 95.5 0.011 3.8E-07 40.9 3.6 31 106-136 7-37 (92)
240 2dnq_A RNA-binding protein 4B; 95.5 0.011 3.6E-07 40.8 3.5 31 106-136 5-35 (90)
241 2dis_A Unnamed protein product 95.5 0.0086 2.9E-07 42.9 3.1 32 104-135 3-34 (109)
242 1s79_A Lupus LA protein; RRM, 95.5 0.0079 2.7E-07 43.0 2.8 32 106-137 8-39 (103)
243 2e5g_A U6 snRNA-specific termi 95.4 0.012 4E-07 41.0 3.6 32 107-138 6-37 (94)
244 2cpf_A RNA binding motif prote 95.4 0.0091 3.1E-07 41.9 2.8 31 107-137 3-33 (98)
245 2m2b_A RNA-binding protein 10; 95.4 0.011 3.6E-07 44.2 3.3 33 106-138 20-52 (131)
246 2dnl_A Cytoplasmic polyadenyla 95.4 0.0096 3.3E-07 43.2 2.9 31 107-137 6-36 (114)
247 4a8x_A RNA-binding protein wit 95.3 0.012 4E-07 40.2 3.2 30 108-137 3-32 (88)
248 2cqh_A IGF-II mRNA-binding pro 95.3 0.0094 3.2E-07 41.4 2.8 30 106-135 5-34 (93)
249 3s7r_A Heterogeneous nuclear r 95.3 0.01 3.5E-07 40.5 2.9 32 106-137 8-39 (87)
250 2dgs_A DAZ-associated protein 95.3 0.012 4.1E-07 41.3 3.2 32 106-137 7-38 (99)
251 1whw_A Hypothetical protein ri 95.3 0.013 4.5E-07 41.1 3.5 32 106-137 5-36 (99)
252 3bs9_A Nucleolysin TIA-1 isofo 95.3 0.013 4.4E-07 39.9 3.3 31 107-137 4-34 (87)
253 1why_A Hypothetical protein ri 95.3 0.011 3.8E-07 41.4 3.0 33 105-137 13-45 (97)
254 3s8s_A Histone-lysine N-methyl 95.3 0.012 4.1E-07 42.5 3.2 32 107-138 4-35 (110)
255 1x5t_A Splicing factor 3B subu 95.3 0.014 4.7E-07 40.7 3.4 32 107-138 3-34 (96)
256 3beg_B Splicing factor, argini 95.2 0.0094 3.2E-07 43.4 2.6 30 108-137 15-44 (115)
257 3mdf_A Peptidyl-prolyl CIS-tra 95.2 0.014 4.7E-07 39.6 3.3 31 107-137 5-35 (85)
258 2dnh_A Bruno-like 5, RNA bindi 95.2 0.013 4.4E-07 41.6 3.2 32 106-137 12-43 (105)
259 1x4e_A RNA binding motif, sing 95.2 0.0098 3.3E-07 40.5 2.5 31 107-137 3-33 (85)
260 2dgp_A Bruno-like 4, RNA bindi 95.2 0.013 4.3E-07 41.8 3.1 32 106-137 10-41 (106)
261 2e5j_A Methenyltetrahydrofolat 95.2 0.014 4.9E-07 40.8 3.4 32 106-137 16-47 (97)
262 1x4a_A Splicing factor, argini 95.2 0.013 4.5E-07 41.9 3.3 32 106-137 19-50 (109)
263 2mss_A Protein (musashi1); RNA 95.2 0.012 4.2E-07 38.9 2.8 27 111-137 1-27 (75)
264 2div_A TRNA selenocysteine ass 95.2 0.012 4.1E-07 41.3 2.9 32 106-137 6-37 (99)
265 1whx_A Hypothetical protein ri 95.2 0.014 4.9E-07 42.1 3.4 30 108-137 9-38 (111)
266 2kvi_A Nuclear polyadenylated 95.2 0.016 5.3E-07 40.6 3.5 32 106-137 7-39 (96)
267 1x4f_A Matrin 3; structural ge 95.1 0.011 3.8E-07 43.0 2.7 32 106-137 22-54 (112)
268 2dnm_A SRP46 splicing factor; 95.1 0.014 4.9E-07 41.2 3.3 32 106-137 10-41 (103)
269 3md1_A Nuclear and cytoplasmic 95.1 0.015 5.1E-07 39.2 3.2 28 110-137 2-29 (83)
270 1p27_B RNA-binding protein 8A; 95.1 0.019 6.4E-07 40.8 3.9 33 105-137 19-51 (106)
271 2dnz_A Probable RNA-binding pr 95.1 0.015 5.1E-07 40.4 3.2 31 107-137 3-33 (95)
272 2cq3_A RNA-binding protein 9; 95.1 0.017 5.7E-07 40.9 3.5 32 106-137 12-43 (103)
273 2dnp_A RNA-binding protein 14; 95.1 0.011 3.6E-07 40.9 2.3 31 106-136 6-36 (90)
274 2x1f_A MRNA 3'-END-processing 95.0 0.014 4.8E-07 40.7 3.0 29 109-137 2-30 (96)
275 2lxi_A RNA-binding protein 10; 95.0 0.012 4E-07 40.9 2.5 26 110-135 2-27 (91)
276 2cqb_A Peptidyl-prolyl CIS-tra 95.0 0.014 4.8E-07 41.2 3.0 32 106-137 9-40 (102)
277 1uaw_A Mouse-musashi-1; RNP-ty 95.0 0.013 4.5E-07 38.9 2.7 27 111-137 2-28 (77)
278 2jvr_A Nucleolar protein 3; RN 95.0 0.016 5.3E-07 42.1 3.2 32 106-137 25-57 (111)
279 2cpy_A RNA-binding protein 12; 95.0 0.017 5.9E-07 41.8 3.4 31 106-136 12-42 (114)
280 2dgv_A HnRNP M, heterogeneous 95.0 0.015 5.2E-07 40.1 3.0 32 106-137 5-36 (92)
281 2dgo_A Cytotoxic granule-assoc 95.0 0.019 6.5E-07 41.5 3.6 33 105-137 11-43 (115)
282 2cqi_A Nucleolysin TIAR; RNA r 95.0 0.014 4.8E-07 41.3 2.8 32 106-137 12-43 (103)
283 2ek1_A RNA-binding protein 12; 94.9 0.017 5.7E-07 40.2 3.1 30 108-137 14-43 (95)
284 2cph_A RNA binding motif prote 94.9 0.015 5.1E-07 41.4 2.9 32 106-137 12-43 (107)
285 2cq0_A Eukaryotic translation 94.9 0.014 4.7E-07 41.3 2.7 32 106-137 12-43 (103)
286 1x4h_A RNA-binding protein 28; 94.9 0.015 5.1E-07 41.7 2.9 32 106-137 12-43 (111)
287 2ywk_A Putative RNA-binding pr 94.9 0.018 6.3E-07 39.9 3.3 32 106-137 13-44 (95)
288 2cpj_A Non-POU domain-containi 94.9 0.014 4.8E-07 41.0 2.7 31 107-137 13-43 (99)
289 2cqg_A TDP-43, TAR DNA-binding 94.9 0.016 5.5E-07 41.0 3.0 32 106-137 12-43 (103)
290 2la6_A RNA-binding protein FUS 94.9 0.02 6.7E-07 40.2 3.4 34 105-138 9-42 (99)
291 1x5u_A Splicing factor 3B subu 94.9 0.016 5.4E-07 41.2 2.9 32 106-137 12-43 (105)
292 2jvo_A Nucleolar protein 3; nu 94.9 0.017 5.7E-07 41.6 3.1 33 105-137 27-59 (108)
293 2cpe_A RNA-binding protein EWS 94.9 0.02 6.7E-07 41.3 3.5 32 106-137 12-43 (113)
294 2cpz_A CUG triplet repeat RNA- 94.9 0.016 5.6E-07 41.9 3.0 32 106-137 22-53 (115)
295 1x5s_A Cold-inducible RNA-bind 94.9 0.016 5.5E-07 40.9 2.9 32 106-137 9-40 (102)
296 2cqd_A RNA-binding region cont 94.9 0.018 6.1E-07 41.8 3.2 32 106-137 14-45 (116)
297 3ex7_B RNA-binding protein 8A; 94.9 0.021 7.2E-07 42.0 3.7 33 105-137 18-50 (126)
298 2ytc_A PRE-mRNA-splicing facto 94.9 0.017 5.7E-07 39.2 2.9 31 107-137 10-40 (85)
299 1oo0_B CG8781-PA, drosophila Y 94.9 0.021 7.2E-07 40.9 3.5 33 105-137 22-54 (110)
300 2fy1_A RNA-binding motif prote 94.8 0.02 7E-07 41.6 3.5 31 107-137 5-35 (116)
301 2la4_A Nuclear and cytoplasmic 94.8 0.019 6.5E-07 40.4 3.2 31 107-137 25-55 (101)
302 1x4b_A Heterogeneous nuclear r 94.8 0.015 5.2E-07 42.1 2.8 31 107-137 25-55 (116)
303 2d9p_A Polyadenylate-binding p 94.8 0.013 4.4E-07 41.5 2.3 32 106-137 12-43 (103)
304 2do4_A Squamous cell carcinoma 94.8 0.018 6.2E-07 40.5 3.0 33 105-137 13-45 (100)
305 3egn_A RNA-binding protein 40; 94.8 0.019 6.4E-07 43.4 3.3 34 105-138 41-74 (143)
306 2err_A Ataxin-2-binding protei 94.8 0.024 8.2E-07 40.7 3.7 34 105-138 25-58 (109)
307 2e44_A Insulin-like growth fac 94.8 0.014 4.8E-07 40.7 2.4 33 106-138 12-44 (96)
308 2cqp_A RNA-binding protein 12; 94.8 0.023 7.8E-07 39.7 3.5 31 107-137 13-43 (98)
309 3ulh_A THO complex subunit 4; 94.8 0.019 6.6E-07 40.8 3.2 33 105-137 25-57 (107)
310 2fc9_A NCL protein; structure 94.8 0.014 4.8E-07 41.1 2.4 31 106-136 12-42 (101)
311 2dgu_A Heterogeneous nuclear r 94.8 0.013 4.3E-07 41.6 2.1 30 107-136 9-38 (103)
312 1iqt_A AUF1, heterogeneous nuc 94.8 0.013 4.4E-07 38.8 2.0 27 111-137 1-27 (75)
313 2cqc_A Arginine/serine-rich sp 94.8 0.018 6E-07 40.0 2.8 33 105-137 11-43 (95)
314 1wi8_A EIF-4B, eukaryotic tran 94.8 0.022 7.5E-07 40.4 3.3 28 107-134 13-40 (104)
315 2xs2_A Deleted in azoospermia- 94.7 0.023 8E-07 40.0 3.5 31 107-137 7-37 (102)
316 2dgx_A KIAA0430 protein; RRM d 94.7 0.017 5.8E-07 40.4 2.7 30 108-137 8-41 (96)
317 1wel_A RNA-binding protein 12; 94.7 0.018 6.2E-07 42.4 2.9 32 107-138 23-54 (124)
318 2hvz_A Splicing factor, argini 94.7 0.018 6.1E-07 40.6 2.8 28 110-137 1-28 (101)
319 2rs2_A Musashi-1, RNA-binding 94.7 0.017 5.8E-07 41.5 2.6 33 105-137 21-53 (109)
320 2dhg_A TRNA selenocysteine ass 94.7 0.019 6.3E-07 40.7 2.8 32 106-137 6-38 (104)
321 2xnq_A Nuclear polyadenylated 94.7 0.021 7.1E-07 40.1 3.0 33 105-137 18-51 (97)
322 3ucg_A Polyadenylate-binding p 94.6 0.018 6.3E-07 39.3 2.6 30 108-137 5-34 (89)
323 3p5t_L Cleavage and polyadenyl 94.6 0.017 5.9E-07 39.8 2.4 25 110-134 2-26 (90)
324 2jrs_A RNA-binding protein 39; 94.6 0.026 9E-07 40.4 3.5 33 105-137 22-54 (108)
325 2jwn_A Embryonic polyadenylate 94.5 0.0082 2.8E-07 44.2 0.6 30 108-137 35-64 (124)
326 1wg5_A Heterogeneous nuclear r 94.5 0.025 8.6E-07 40.2 3.2 32 106-137 12-43 (104)
327 1x4g_A Nucleolysin TIAR; struc 94.5 0.021 7.3E-07 40.8 2.8 32 106-137 22-53 (109)
328 3ns6_A Eukaryotic translation 94.5 0.019 6.4E-07 40.6 2.5 30 108-137 5-40 (100)
329 2cpd_A Apobec-1 stimulating pr 94.5 0.024 8.3E-07 39.7 3.1 29 106-134 12-40 (99)
330 3lqv_A PRE-mRNA branch site pr 94.5 0.024 8.3E-07 40.9 3.1 31 107-137 6-36 (115)
331 2khc_A Testis-specific RNP-typ 94.5 0.022 7.7E-07 41.3 2.9 32 106-137 37-68 (118)
332 2dh8_A DAZ-associated protein 94.5 0.015 5.1E-07 41.3 1.9 32 106-137 13-44 (105)
333 1wf1_A RNA-binding protein RAL 94.4 0.024 8.1E-07 40.7 2.9 30 108-137 26-56 (110)
334 2do0_A HnRNP M, heterogeneous 94.4 0.022 7.5E-07 41.0 2.8 32 106-137 12-43 (114)
335 2krb_A Eukaryotic translation 94.4 0.026 8.8E-07 38.0 2.9 29 110-138 2-36 (81)
336 1nu4_A U1A RNA binding domain; 94.4 0.027 9.3E-07 39.2 3.0 31 107-137 6-40 (97)
337 1wez_A HnRNP H', FTP-3, hetero 94.4 0.024 8.2E-07 40.2 2.8 31 106-136 12-42 (102)
338 1fj7_A Nucleolin RBD1, protein 94.3 0.019 6.5E-07 40.4 2.2 32 107-138 15-46 (101)
339 2e5h_A Zinc finger CCHC-type a 94.3 0.02 6.9E-07 39.6 2.2 32 106-137 13-44 (94)
340 1p1t_A Cleavage stimulation fa 94.3 0.021 7.3E-07 40.3 2.4 30 108-137 7-36 (104)
341 2cq4_A RNA binding motif prote 94.2 0.029 9.7E-07 40.5 3.0 31 107-137 23-53 (114)
342 2dha_A FLJ20171 protein; RRM d 94.2 0.027 9.1E-07 41.6 2.9 30 107-136 21-50 (123)
343 2dng_A Eukaryotic translation 94.2 0.033 1.1E-06 39.3 3.3 29 106-134 12-40 (103)
344 2db1_A Heterogeneous nuclear r 94.2 0.029 1E-06 40.9 3.0 31 106-136 14-44 (118)
345 2wbr_A GW182, gawky, LD47780P; 94.2 0.027 9.2E-07 38.9 2.6 33 106-138 4-36 (89)
346 2lmi_A GRSF-1, G-rich sequence 94.1 0.032 1.1E-06 39.8 3.0 30 106-135 8-37 (107)
347 1x5o_A RNA binding motif, sing 94.0 0.03 1E-06 40.4 2.8 32 106-137 22-53 (114)
348 2cpi_A CCR4-NOT transcription 94.0 0.018 6.2E-07 41.5 1.5 33 106-138 12-47 (111)
349 1h2v_Z 20 kDa nuclear CAP bind 94.0 0.034 1.2E-06 42.6 3.2 30 107-136 37-66 (156)
350 2ki2_A SS-DNA binding protein 93.9 0.023 7.7E-07 39.0 1.8 28 110-137 2-29 (90)
351 2kt5_A RNA and export factor-b 93.9 0.045 1.6E-06 40.1 3.6 33 105-137 31-63 (124)
352 2cpx_A Hypothetical protein FL 93.8 0.023 7.9E-07 41.0 1.8 31 106-136 22-52 (115)
353 1fjc_A Nucleolin RBD2, protein 93.8 0.023 7.9E-07 39.5 1.7 31 106-136 13-43 (96)
354 2nlw_A Eukaryotic translation 93.8 0.044 1.5E-06 38.9 3.2 32 107-138 13-50 (105)
355 3n9u_C Cleavage and polyadenyl 93.7 0.036 1.2E-06 42.7 2.8 27 108-134 54-80 (156)
356 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.7 0.044 1.5E-06 40.9 3.3 32 106-137 60-91 (140)
357 2j76_E EIF-4B, EIF4B, eukaryot 93.7 0.029 9.9E-07 39.5 2.1 29 106-134 16-44 (100)
358 2kxn_B Transformer-2 protein h 93.6 0.024 8.3E-07 42.1 1.7 33 105-137 42-74 (129)
359 2hzc_A Splicing factor U2AF 65 93.5 0.042 1.4E-06 37.3 2.6 27 107-133 4-30 (87)
360 2e5i_A Heterogeneous nuclear r 93.5 0.061 2.1E-06 39.7 3.7 31 108-138 24-54 (124)
361 1wg1_A KIAA1579 protein, homol 93.5 0.045 1.5E-06 37.4 2.7 28 108-136 4-31 (88)
362 2f3j_A RNA and export factor b 93.4 0.056 1.9E-06 42.5 3.5 32 106-137 85-116 (177)
363 1u6f_A Tcubp1, RNA-binding pro 93.3 0.042 1.4E-06 41.1 2.5 32 106-137 39-70 (139)
364 3q2s_C Cleavage and polyadenyl 93.2 0.051 1.7E-06 44.7 3.1 27 108-134 67-93 (229)
365 2cq2_A Hypothetical protein LO 93.2 0.043 1.5E-06 39.9 2.3 33 105-137 21-55 (114)
366 3zzy_A Polypyrimidine tract-bi 93.1 0.077 2.6E-06 39.5 3.6 32 107-138 26-57 (130)
367 2hgm_A HNRPF protein, heteroge 93.0 0.065 2.2E-06 39.7 3.1 30 106-135 39-68 (126)
368 2j8a_A Histone-lysine N-methyl 93.0 0.064 2.2E-06 39.9 3.0 30 110-139 3-36 (136)
369 2dgw_A Probable RNA-binding pr 92.8 0.078 2.7E-06 36.3 3.2 28 106-133 7-34 (91)
370 2voo_A Lupus LA protein; RNA-b 92.6 0.059 2E-06 43.0 2.6 30 108-137 108-137 (193)
371 1sjr_A Polypyrimidine tract-bi 92.5 0.074 2.5E-06 41.3 2.9 33 106-138 43-75 (164)
372 2lcw_A RNA-binding protein FUS 91.6 0.024 8.1E-07 41.1 0.0 32 107-138 5-36 (116)
373 4eyt_A Telomerase associated p 92.3 1.3 4.3E-05 30.2 8.4 59 11-77 8-66 (129)
374 2a3j_A U1 small nuclear ribonu 92.2 0.078 2.7E-06 39.3 2.7 32 106-137 26-61 (127)
375 2fc8_A NCL protein; structure 91.7 0.075 2.6E-06 37.3 2.0 29 106-134 12-40 (102)
376 2dnn_A RNA-binding protein 12; 91.2 0.13 4.4E-06 37.0 2.8 26 108-133 15-40 (109)
377 3lpe_A Putative transcription 90.3 1.7 5.7E-05 30.0 7.8 34 41-79 39-72 (92)
378 3u1l_A PRE-mRNA-splicing facto 90.3 0.15 5.2E-06 42.1 2.8 32 106-137 131-171 (240)
379 2diu_A KIAA0430 protein; struc 90.2 0.2 6.8E-06 35.0 2.9 29 108-136 7-41 (96)
380 1x5p_A Negative elongation fac 87.7 0.34 1.2E-05 33.5 2.8 29 107-137 13-41 (97)
381 2g0c_A ATP-dependent RNA helic 87.4 1.6 5.4E-05 28.7 5.8 65 17-90 2-72 (76)
382 2bz2_A Negative elongation fac 84.5 0.71 2.4E-05 33.5 3.2 30 106-137 36-65 (121)
383 3tht_A Alkylated DNA repair pr 84.3 0.6 2E-05 40.7 3.1 33 105-137 14-48 (345)
384 1owx_A Lupus LA protein, SS-B, 79.1 1.3 4.6E-05 32.3 2.9 32 106-137 15-47 (121)
385 3fry_A Probable copper-exporti 76.8 8.4 0.00029 24.4 6.2 55 15-76 6-60 (73)
386 4e8u_A Putative uncharacterize 75.1 8.2 0.00028 29.8 6.4 56 17-75 14-81 (172)
387 3j21_T 50S ribosomal protein L 70.2 7.7 0.00026 26.3 4.7 56 18-76 25-82 (86)
388 3dxs_X Copper-transporting ATP 68.8 18 0.00063 22.5 6.4 55 16-76 4-62 (74)
389 3ts2_A Protein LIN-28 homolog 65.2 0.99 3.4E-05 34.2 -0.7 28 30-65 2-29 (148)
390 2exu_A Transcription initiatio 64.0 8.6 0.00029 30.6 4.5 37 42-83 139-175 (200)
391 1yg0_A COP associated protein; 60.0 24 0.00083 20.9 5.9 55 17-77 4-61 (66)
392 2kt2_A Mercuric reductase; nme 59.7 26 0.00089 21.1 6.3 55 16-76 2-59 (69)
393 1kvi_A Copper-transporting ATP 59.7 29 0.001 21.7 7.3 58 14-77 8-69 (79)
394 3p8b_B Transcription antitermi 57.9 24 0.00083 26.3 6.1 33 42-79 33-65 (152)
395 2v94_A RPS24, 30S ribosomal pr 57.2 30 0.001 24.4 5.9 47 25-72 37-88 (107)
396 2e5p_A Protein PHF1, PHD finge 57.1 4.7 0.00016 25.6 1.5 21 39-67 27-47 (68)
397 2xmw_A PACS-N, cation-transpor 57.0 29 0.001 20.8 6.3 55 16-76 5-62 (71)
398 4a4j_A Pacszia, cation-transpo 56.8 10 0.00035 23.4 3.3 54 16-75 4-60 (69)
399 3h7h_B Transcription elongatio 56.7 11 0.00037 26.6 3.6 36 41-81 40-75 (106)
400 3u5e_X 60S ribosomal protein L 55.0 16 0.00055 27.2 4.3 55 18-75 81-137 (142)
401 2l3m_A Copper-ION-binding prot 54.0 34 0.0011 20.6 6.1 55 16-76 7-65 (71)
402 1ywx_A 30S ribosomal protein S 53.7 51 0.0017 23.0 6.5 47 25-72 28-79 (102)
403 4a17_R RPL23A, 60S ribosomal p 53.7 17 0.00057 27.4 4.3 56 18-76 89-146 (150)
404 1xn9_A 30S ribosomal protein S 53.5 53 0.0018 22.8 7.1 48 25-73 28-80 (101)
405 1q8l_A Copper-transporting ATP 52.6 42 0.0015 21.4 7.9 57 15-77 10-70 (84)
406 3fut_A Dimethyladenosine trans 52.3 12 0.0004 31.3 3.7 29 16-45 111-139 (271)
407 4bby_A Alkyldihydroxyacetoneph 52.3 14 0.00049 34.9 4.7 55 22-77 350-408 (658)
408 2g1d_A 30S ribosomal protein S 51.1 9.4 0.00032 26.5 2.4 47 25-72 29-80 (98)
409 1cpz_A Protein (COPZ); copper 50.9 36 0.0012 20.1 7.3 55 16-76 2-60 (68)
410 3u5c_Y RP50, 40S ribosomal pro 50.8 71 0.0024 23.4 7.6 47 25-72 33-84 (135)
411 3uzu_A Ribosomal RNA small sub 49.4 5 0.00017 33.7 1.0 32 16-47 115-146 (279)
412 2e7g_A Putative ribosome-bindi 49.0 37 0.0013 24.7 5.6 35 39-79 43-80 (129)
413 1osd_A MERP, hypothetical prot 48.9 42 0.0014 20.2 7.1 55 16-76 5-63 (72)
414 3cjk_B Copper-transporting ATP 48.0 45 0.0015 20.4 6.2 55 17-77 5-63 (75)
415 2k6g_A Replication factor C su 47.5 70 0.0024 22.4 6.9 31 13-43 33-63 (109)
416 2ofg_X Zinc-transporting ATPas 47.0 67 0.0023 22.0 7.0 55 16-76 10-68 (111)
417 2d8m_A DNA-repair protein XRCC 46.9 44 0.0015 24.1 5.8 31 12-43 22-52 (129)
418 1yjr_A Copper-transporting ATP 46.6 47 0.0016 20.1 7.7 56 15-76 5-64 (75)
419 3swz_A Steroid 17-alpha-hydrox 46.6 26 0.00089 31.2 5.4 50 18-76 17-70 (494)
420 2inr_A DNA topoisomerase 4 sub 46.5 24 0.00081 32.3 4.9 96 16-132 276-375 (514)
421 2m0o_A PHD finger protein 1; t 46.3 9.6 0.00033 24.9 1.7 21 39-67 44-64 (79)
422 1aw0_A Menkes copper-transport 46.3 33 0.0011 20.7 4.5 56 16-77 5-64 (72)
423 1y3j_A Copper-transporting ATP 46.2 39 0.0013 20.9 4.9 56 16-77 5-64 (77)
424 2xzm_P RPS24E; ribosome, trans 45.1 53 0.0018 24.6 5.8 47 25-72 31-82 (149)
425 3iz5_X 60S ribosomal protein L 45.1 16 0.00056 27.5 3.1 54 18-74 91-146 (152)
426 2eqj_A Metal-response element- 44.6 11 0.00036 24.1 1.7 10 57-66 41-50 (66)
427 1i4w_A Mitochondrial replicati 44.5 14 0.00049 32.1 3.1 22 17-38 144-165 (353)
428 2g9o_A Copper-transporting ATP 44.3 35 0.0012 22.4 4.5 56 16-77 5-64 (90)
429 2e5q_A PHD finger protein 19; 44.1 4 0.00014 25.6 -0.3 10 57-66 35-44 (63)
430 3lo3_A Uncharacterized conserv 43.9 42 0.0014 22.8 4.9 20 56-75 52-71 (94)
431 1fvq_A Copper-transporting ATP 43.8 51 0.0017 19.8 5.6 55 17-77 5-62 (72)
432 3bgu_A Ferredoxin-like protein 43.7 83 0.0028 22.2 6.9 55 17-72 24-88 (116)
433 2ebu_A Replication factor C su 43.6 71 0.0024 22.6 6.2 30 13-42 23-52 (112)
434 1p6t_A Potential copper-transp 42.4 70 0.0024 22.9 6.5 55 17-77 77-135 (151)
435 1qyr_A KSGA, high level kasuga 42.4 16 0.00056 29.9 3.1 23 17-39 92-114 (252)
436 2cu1_A Mitogen-activated prote 41.8 23 0.00079 24.5 3.1 50 22-79 23-73 (103)
437 3bb5_A Stress responsive alpha 41.5 92 0.0032 22.1 7.1 58 17-74 23-91 (121)
438 1nz8_A Transcription antitermi 41.4 26 0.0009 24.9 3.7 24 56-79 61-89 (119)
439 1mwy_A ZNTA; open-faced beta-s 41.1 59 0.002 19.7 7.8 56 16-77 5-62 (73)
440 3tqs_A Ribosomal RNA small sub 40.3 8 0.00027 31.9 0.8 29 17-45 98-126 (255)
441 3tbg_A Cytochrome P450 2D6; mo 40.0 20 0.00068 31.7 3.5 48 19-75 20-70 (479)
442 2cfx_A HTH-type transcriptiona 39.8 90 0.0031 22.6 6.7 47 29-79 78-124 (144)
443 2dhx_A Poly (ADP-ribose) polym 39.6 22 0.00074 25.0 2.8 26 108-133 7-32 (104)
444 2npt_B Mitogen-activated prote 39.3 61 0.0021 22.2 4.9 50 22-79 35-85 (100)
445 3ftd_A Dimethyladenosine trans 39.3 16 0.00054 29.9 2.5 27 16-42 96-122 (249)
446 3e6i_A CYPIIE1, P450-J, cytoch 38.9 26 0.00088 30.9 4.1 50 18-76 19-71 (476)
447 2qif_A Copper chaperone COPZ; 38.8 58 0.002 19.0 6.2 55 16-76 4-62 (69)
448 2cs4_A Protein C12ORF2; GTP bi 38.5 18 0.0006 25.0 2.2 23 19-41 20-43 (95)
449 2dit_A HIV TAT specific factor 38.3 28 0.00094 24.2 3.4 33 107-139 13-56 (112)
450 1opz_A Potential copper-transp 37.9 66 0.0023 19.4 7.8 56 16-77 8-67 (76)
451 2ew9_A Copper-transporting ATP 35.9 62 0.0021 23.1 5.2 56 16-77 82-141 (149)
452 3pm0_A Cypib1, cytochrome P450 35.5 44 0.0015 29.7 5.1 49 18-75 18-68 (507)
453 2i9x_A Putative septation prot 35.1 45 0.0016 22.5 3.8 26 41-66 5-30 (87)
454 1wvf_A 4-cresol dehydrogenase 34.7 25 0.00085 32.2 3.3 46 31-77 217-264 (520)
455 2k2p_A Uncharacterized protein 34.7 28 0.00097 22.8 2.8 57 14-76 22-79 (85)
456 2lfv_A Protein DAMX; cell divi 40.6 8.4 0.00029 27.2 0.0 61 14-79 24-86 (106)
457 2jrh_A Mitogen-activated prote 34.1 69 0.0024 21.6 4.4 50 22-79 19-69 (94)
458 3mfb_A Uncharacterized protein 33.6 63 0.0022 24.4 4.8 37 27-63 3-42 (157)
459 1x8d_A Hypothetical protein YI 33.6 75 0.0026 22.1 4.9 34 30-66 27-60 (104)
460 1vq8_S 50S ribosomal protein L 33.5 59 0.002 21.8 4.2 52 18-72 24-77 (85)
461 2oug_A Transcriptional activat 33.2 56 0.0019 24.5 4.6 24 56-79 51-74 (162)
462 3r8s_T 50S ribosomal protein L 33.0 75 0.0026 21.7 4.7 31 18-48 29-61 (93)
463 3pm9_A Putative oxidoreductase 32.7 69 0.0024 28.9 5.8 55 23-78 194-252 (476)
464 2kyz_A Heavy metal binding pro 32.6 33 0.0011 20.6 2.8 52 17-75 4-55 (67)
465 2kzf_A RBFA, ribosome-binding 32.6 72 0.0025 22.2 4.7 35 39-79 35-72 (106)
466 2ldi_A Zinc-transporting ATPas 32.5 78 0.0027 18.6 5.6 54 16-75 5-62 (71)
467 2c60_A Human mitogen-activated 31.3 67 0.0023 22.3 4.1 50 22-79 46-96 (111)
468 2uuu_A Alkyldihydroxyacetoneph 31.1 43 0.0015 31.2 4.2 55 23-78 281-339 (584)
469 1jww_A Potential copper-transp 31.0 93 0.0032 19.0 5.0 55 16-76 5-63 (80)
470 2qyc_A Ferredoxin-like protein 30.7 1.3E+02 0.0043 20.4 6.7 54 18-72 8-71 (103)
471 2e1c_A Putative HTH-type trans 30.2 1.7E+02 0.0057 22.0 7.0 52 22-78 94-145 (171)
472 4hcz_A PHD finger protein 1; p 30.2 26 0.00089 21.6 1.7 21 39-67 21-41 (58)
473 2fdv_A Cytochrome P450 2A6; CY 30.2 46 0.0016 29.4 4.2 49 18-75 19-70 (476)
474 2cyy_A Putative HTH-type trans 30.0 1.6E+02 0.0054 21.4 6.9 53 22-79 74-126 (151)
475 1uw4_A UPF3X; nonsense mediate 29.9 35 0.0012 23.2 2.6 25 110-134 2-26 (91)
476 2kkh_A Putative heavy metal tr 29.7 1.2E+02 0.004 19.8 8.3 56 16-77 18-77 (95)
477 2od0_A Hypothetical protein VP 29.4 50 0.0017 22.8 3.4 22 27-48 4-25 (105)
478 2nn4_A Hypothetical protein YQ 29.3 16 0.00054 23.8 0.6 17 28-44 4-20 (72)
479 2ia9_A Putative septation prot 29.2 63 0.0022 22.4 3.8 26 41-66 5-30 (100)
480 4hhu_A OR280; engineered prote 29.1 1.5E+02 0.0053 21.0 6.5 56 17-77 44-104 (170)
481 3gxs_A Phenylacetate-coenzyme 29.1 1.3E+02 0.0043 20.6 5.6 44 18-64 7-52 (109)
482 1jos_A RBFA, ribosome-binding 28.5 76 0.0026 22.9 4.4 33 41-79 36-73 (128)
483 3ced_A Methionine import ATP-b 28.4 88 0.003 21.3 4.5 61 17-79 22-87 (98)
484 2hiy_A Hypothetical protein; C 28.4 2E+02 0.0069 22.1 10.3 110 16-132 7-123 (183)
485 2i9z_A Putative septation prot 28.2 68 0.0023 22.4 3.8 26 41-66 5-30 (105)
486 2rop_A Copper-transporting ATP 27.2 1.9E+02 0.0065 22.0 7.0 56 16-77 124-183 (202)
487 2crl_A Copper chaperone for su 26.5 85 0.0029 21.0 4.2 53 17-76 22-75 (98)
488 1cqm_A Ribosomal protein S6; a 26.3 1.3E+02 0.0043 20.6 5.1 52 23-75 10-76 (101)
489 2ko1_A CTR148A, GTP pyrophosph 26.2 1.3E+02 0.0045 19.1 6.9 48 28-79 18-68 (88)
490 2ko4_A Mediator of RNA polymer 26.0 38 0.0013 22.3 2.0 19 20-38 29-48 (81)
491 1po5_A Cytochrome P450 2B4; ox 25.9 61 0.0021 28.6 4.2 49 18-75 19-70 (476)
492 3l4j_A DNA topoisomerase 2; to 25.4 1.3E+02 0.0043 28.9 6.2 23 15-37 475-497 (757)
493 1whv_A Poly(A)-specific ribonu 25.3 48 0.0016 23.0 2.6 24 111-135 18-41 (100)
494 1vd2_A Protein kinase C, IOTA 25.2 1.4E+02 0.0049 20.1 4.9 54 18-78 17-75 (89)
495 3n9y_A Cholesterol SIDE-chain 25.0 98 0.0034 27.2 5.5 37 30-75 36-72 (487)
496 2j5a_A 30S ribosomal protein S 24.9 1.2E+02 0.0041 21.2 4.8 55 18-75 13-83 (110)
497 3i4p_A Transcriptional regulat 24.6 2.1E+02 0.0073 21.0 6.8 56 17-76 64-122 (162)
498 3lpx_A GYRA, DNA gyrase, A sub 24.5 1E+02 0.0034 28.0 5.2 97 15-132 226-326 (500)
499 3l3e_A DNA topoisomerase 2-bin 24.4 41 0.0014 23.2 2.2 33 10-43 13-45 (107)
500 2kgl_A Mesoderm development ca 24.4 2.4E+02 0.0083 21.9 6.7 55 16-78 76-137 (195)
No 1
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=5.5e-25 Score=165.35 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
...+|||+|||++||+++|+++|++||+|..|.|+.+. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999885 4579999999999999999999999999999999997766
Q ss_pred hHHhhhccccccCcceeEEEEeccCcccchh
Q 022930 94 SLFLRKNLYLCIGFLFFFLIFFILGRVVDGR 124 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~ 124 (290)
.................+|||+|||..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC---------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCcccc
Confidence 5332222222334445679999999988765
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=2.4e-24 Score=179.37 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=103.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
...++||||+|||++||+++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|+.||..||+..+.++.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 92 KSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
........ .....+|||+|||..+++++|...|.+||...
T Consensus 92 ~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 131 (213)
T 4f02_A 92 SQRDPSLR------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131 (213)
T ss_dssp CCCCTHHH------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred cccccccc------ccccccceECCcccccHHHHHHHHHhhcCCeE
Confidence 54422111 11235799999999999999999999999854
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=1.6e-23 Score=191.62 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+.||+++|.++|.+||+|+.|.|+.++.++.++|||||+|.++++|++||.+|||+.|+|+.|.|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 54
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=1.8e-23 Score=171.28 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=105.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+++..+.++|||+|||+++|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|++||.. ++..|+|+.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 3455667789999999999999999999999999999999999999999999999999999999999985 999999999
Q ss_pred cceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 87 VHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
|.+.+.......... .......+|||+|||..++.++|...|..||...
T Consensus 84 l~v~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 84 VEPKRAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp CEEEECCC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred eeeecccCccccccc--ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 988776543222111 1223457899999999999999999999999754
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=152.88 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
-++++|||+|||+++|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998888765
Q ss_pred h
Q 022930 93 S 93 (290)
Q Consensus 93 ~ 93 (290)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 4
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.89 E-value=1e-22 Score=162.16 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=104.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
.++|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.++++|..||+.|||..|.++.|.+.+...
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999877654
Q ss_pred HHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 95 LFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.. ......+|||+|||..++.++|...|.+||...
T Consensus 82 ~~--------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 82 SS--------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 116 (167)
T ss_dssp CC--------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred Cc--------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe
Confidence 21 123456799999999999999999999999754
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=6.3e-23 Score=163.76 Aligned_cols=116 Identities=24% Similarity=0.315 Sum_probs=104.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+++|+++|.++|++||+|..|.|+.++.+|.++|||||+|.++++|+.||+.|||..|.++.|.+.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999998899999999999999999999999999999999999987665
Q ss_pred hHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 94 SLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
... ......+|||+|||..++.++|...|.+||...
T Consensus 82 ~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 117 (168)
T 1b7f_A 82 PGG--------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 117 (168)
T ss_dssp CCS--------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE
T ss_pred CCc--------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE
Confidence 321 223457899999999999999999999999754
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=9e-23 Score=169.61 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=103.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|..||+.|||..|+++.|.|.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999886554
Q ss_pred hHHhhh---ccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 94 SLFLRK---NLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 94 ~~~~~~---~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...... ...........+|||+|||..++.++|...|.+||...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 153 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 153 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee
Confidence 321111 11112334567899999999999999999999999754
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.88 E-value=3e-22 Score=160.83 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=98.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCC--CcceEEEEEEccHHHHHHHHHHhCCccccc---cccc
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDRLDGLFLNF---NFVH 88 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg--~~~g~afV~F~~~~~a~~Al~~l~g~~~~~---~~~~ 88 (290)
+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++ .++|||||+|.+.++|+.||+.|||..+.+ ..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998877 899999999999999999999999987763 3333
Q ss_pred eehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 89 EILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
+...... ........+|||+|||..++.++|...|.+||...
T Consensus 82 ~~~~~~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 123 (175)
T 3nmr_A 82 MKPADSE-------KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 123 (175)
T ss_dssp EEECGGG-------CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred Ecccccc-------ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE
Confidence 3322221 11233567899999999999999999999999854
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=1.8e-22 Score=166.79 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNIT-FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~-~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
++++|||+||| +.||+++|+++|++||.|..|.|+.+. +|||||+|.++++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998763 799999999999999999999999999999998876
Q ss_pred hhHHhhhc---------c-----------c---------cccCcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 93 SSLFLRKN---------L-----------Y---------LCIGFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 93 ~~~~~~~~---------~-----------~---------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
........ + . .....+..+|||+|||..+++++|...|.+||..
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 43111000 0 0 0011345679999999999999999999999986
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.87 E-value=3.3e-22 Score=159.54 Aligned_cols=114 Identities=23% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
++++|||+|||+++|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||.. +..|+|+.|.+.+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999994 567888888776654
Q ss_pred hHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 94 SLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.... .....+|||+|||..++.++|...|.+||...
T Consensus 80 ~~~~--------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 115 (167)
T 2cjk_A 80 PRDE--------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII 115 (167)
T ss_dssp CHHH--------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCS
T ss_pred chhh--------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEE
Confidence 4322 22456899999999999999999999999764
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.1e-22 Score=159.27 Aligned_cols=115 Identities=23% Similarity=0.205 Sum_probs=101.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhhH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSL 95 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~ 95 (290)
++|||+|||+++|+++|.++|++||+|..|.|+.++ ++.++|||||+|.+.++|..||..|||..|.++.|.+.+....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999886 5789999999999999999999999999999999988766432
Q ss_pred HhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 96 FLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
. ........+|||+|||..++.++|...|.+||...
T Consensus 80 ~------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 115 (166)
T 3md3_A 80 Q------QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL 115 (166)
T ss_dssp C------CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE
T ss_pred C------CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee
Confidence 1 12344567899999999999999999999999854
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=6.8e-23 Score=148.17 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCc----cc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK--VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL----FL 82 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~--I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~----~~ 82 (290)
+.....+.||||+|||+++|+++|.++|++||. |..|.|+.|+.||.++|||||+|.+.++|++||+.|||. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 456677899999999999999999999999995 679999999999999999999999999999999999996 47
Q ss_pred cccccceehh
Q 022930 83 NFNFVHEILK 92 (290)
Q Consensus 83 ~~~~~~~~~~ 92 (290)
+|+.|.|.+.
T Consensus 83 ~Gr~i~V~~A 92 (95)
T 2lkz_A 83 DGKTIGVDFA 92 (95)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 7777777654
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=148.07 Aligned_cols=80 Identities=23% Similarity=0.193 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
.++|||+|||+++|+++|+++|++||+|..|.|+.|+.|++++|||||+|.+.++|++||+.|||..|+|+.|.|.+...
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999877644
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=6.4e-23 Score=147.43 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh-CCccccccccceehh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGLFLNFNFVHEILK 92 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~~~~~~~~~~~~ 92 (290)
+++|||+|||+++|+++|+++|++|| +|..|.|+.++.||.++|||||+|.++++|++||+.| |+..|+|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999977 566789999988877
Q ss_pred hhH
Q 022930 93 SSL 95 (290)
Q Consensus 93 ~~~ 95 (290)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=144.09 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=80.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+.+....++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 44556677899999999999999999999999999999999999889999999999999999999999999999898888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 87 l~v~~a~~ 94 (105)
T 1x5u_A 87 IRVNKASA 94 (105)
T ss_dssp CEEEETTT
T ss_pred EEEEECCC
Confidence 88876654
No 17
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.4e-22 Score=144.90 Aligned_cols=88 Identities=41% Similarity=0.615 Sum_probs=79.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+++..+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+++.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 5 SSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34566777899999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 85 l~V~~a~~ 92 (103)
T 2dnm_A 85 LRVQVARY 92 (103)
T ss_dssp CEEEECSS
T ss_pred EEEEECCc
Confidence 77766543
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=141.29 Aligned_cols=86 Identities=31% Similarity=0.458 Sum_probs=78.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
....+....++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceehh
Q 022930 87 VHEILK 92 (290)
Q Consensus 87 ~~~~~~ 92 (290)
|.|.+.
T Consensus 87 l~v~~a 92 (95)
T 2cqc_A 87 IRVSGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 887665
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.86 E-value=1.8e-21 Score=163.73 Aligned_cols=120 Identities=25% Similarity=0.203 Sum_probs=99.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 12 ~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
..++++|||+|||+ .+|+++|+++|++||+|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999875 7999999999999999999999999999999987
Q ss_pred hhhhHH----hhh-----------------------ccccccCcceeEEEEeccCcccchhHHHHHhhccC-Cc
Q 022930 91 LKSSLF----LRK-----------------------NLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYG-PN 136 (290)
Q Consensus 91 ~~~~~~----~~~-----------------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~ 136 (290)
+..... ... ........+..+|||+|||..++.++|...|.+|| ..
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 665320 000 00001123467899999999999999999999998 54
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=144.15 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=81.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC------C
Q 022930 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD------G 79 (290)
Q Consensus 6 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~------g 79 (290)
...++.....++|||+|||+++|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||..|| +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3456667788999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccccceehhhh
Q 022930 80 LFLNFNFVHEILKSS 94 (290)
Q Consensus 80 ~~~~~~~~~~~~~~~ 94 (290)
..|+|+.|.|.+...
T Consensus 86 ~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVT 100 (111)
T ss_dssp EESSSCEEEEECCCC
T ss_pred cEEcCEEEEEEECCC
Confidence 888888888776644
No 21
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=3.6e-21 Score=144.36 Aligned_cols=88 Identities=20% Similarity=0.421 Sum_probs=79.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
....+..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33456667899999999999999999999999999999999999889999999999999999999999999998888887
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 87 l~V~~a~~ 94 (115)
T 2dgo_A 87 IRTNWATR 94 (115)
T ss_dssp CEEEESSC
T ss_pred EEEEEccC
Confidence 77766544
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=140.22 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
++....++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+++.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 445567899999999999999999999999999999999999999999999999999999999999 9998888888887
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 84 ~~a~~ 88 (99)
T 2dgs_A 84 KRAEP 88 (99)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 76543
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.9e-21 Score=140.89 Aligned_cols=84 Identities=27% Similarity=0.510 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
...+.++|||+|||+.+|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 84 ~a~~ 87 (99)
T 1whw_A 84 PSTI 87 (99)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6644
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=139.60 Aligned_cols=84 Identities=30% Similarity=0.437 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.......++|||+|||+.+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+++.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eehh
Q 022930 89 EILK 92 (290)
Q Consensus 89 ~~~~ 92 (290)
|.+.
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=142.09 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.....+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+++.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 86 v~~a~~ 91 (102)
T 1x5s_A 86 VDQAGK 91 (102)
T ss_dssp EEEEEC
T ss_pred EEECCC
Confidence 766543
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-21 Score=142.51 Aligned_cols=86 Identities=23% Similarity=0.480 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.....+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 89 v~~a~~ 94 (103)
T 2cq0_A 89 VEWAKP 94 (103)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 776543
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=137.53 Aligned_cols=81 Identities=20% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999988887765
Q ss_pred h
Q 022930 93 S 93 (290)
Q Consensus 93 ~ 93 (290)
.
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=141.89 Aligned_cols=88 Identities=28% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEccc-CCCCCcceEEEEEEccHHHHHHHHHHh-CCccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRL-DGLFLNF 84 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d-~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~~~~ 84 (290)
..++.....++|||+|||+.+|+++|+++|.+||+|..|.|+.+ +.++.++|||||+|.+.++|++||..| |+..|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 44556667899999999999999999999999999999999998 789999999999999999999999999 9988888
Q ss_pred cccceehhhh
Q 022930 85 NFVHEILKSS 94 (290)
Q Consensus 85 ~~~~~~~~~~ 94 (290)
+.|.|.+...
T Consensus 87 ~~l~v~~a~~ 96 (107)
T 2cph_A 87 RRLVLEWADS 96 (107)
T ss_dssp CBCEEEECCC
T ss_pred CEEEEEeCCC
Confidence 8888776644
No 29
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=2.9e-21 Score=142.95 Aligned_cols=84 Identities=27% Similarity=0.392 Sum_probs=77.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
++++....++|||+|||+.+|+++|+++|.+||+|..|.|+.++ +|.++|||||+|.+.++|++||..|||..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45666778999999999999999999999999999999999997 99999999999999999999999999999999988
Q ss_pred ceehh
Q 022930 88 HEILK 92 (290)
Q Consensus 88 ~~~~~ 92 (290)
.|.+.
T Consensus 101 ~V~~a 105 (107)
T 3ulh_A 101 NIQLV 105 (107)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87764
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.85 E-value=3.1e-21 Score=165.41 Aligned_cols=115 Identities=31% Similarity=0.439 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q 022930 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL 82 (290)
Q Consensus 3 ~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~ 82 (290)
.+...+.......++|||+|||++||+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..|||..|
T Consensus 10 ~~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 10 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CCCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 344455566677789999999999999999999999999999999765 79999999999999999999999999
Q ss_pred cccccceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 83 NFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.++.|.|.+.. +..+|||+|||..++..+|...|..||...
T Consensus 84 ~g~~l~v~~a~--------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 84 KSRPLRIRFAT--------------HGAALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp TTEECEEEECC--------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCceeEeeecc--------------cCCcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 99999887653 356899999999999999999999999753
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-21 Score=142.41 Aligned_cols=85 Identities=27% Similarity=0.413 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+....++++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|.+..
T Consensus 97 V~~a~ 101 (106)
T 1p27_B 97 VDWCF 101 (106)
T ss_dssp EEESE
T ss_pred EEeec
Confidence 77653
No 32
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=140.15 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=78.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
..+++....++|||+|||+++|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|+.||+.||
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456667799999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred Cccccccccceehh
Q 022930 79 GLFLNFNFVHEILK 92 (290)
Q Consensus 79 g~~~~~~~~~~~~~ 92 (290)
|..|+|+.|.|.+.
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 99999988887654
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=3.4e-21 Score=135.79 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
+++|||+|||+++++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999998888877654
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=3.1e-21 Score=136.63 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
..+.++|||+|||+.+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999988888765
Q ss_pred h
Q 022930 92 K 92 (290)
Q Consensus 92 ~ 92 (290)
.
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=3.4e-21 Score=146.88 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+....+.++|||+|||+.||+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+++.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34456667889999999999999999999999999999999999999999999999999999999999999996665555
Q ss_pred cceehh
Q 022930 87 VHEILK 92 (290)
Q Consensus 87 ~~~~~~ 92 (290)
|.|.+.
T Consensus 94 l~v~~a 99 (126)
T 3ex7_B 94 ISVDWC 99 (126)
T ss_dssp CEEEES
T ss_pred EEEEEe
Confidence 554433
No 36
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1e-21 Score=140.80 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=71.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G--~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
.+|||+|||+++|+++|+++|++|| +|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999887765
Q ss_pred h
Q 022930 94 S 94 (290)
Q Consensus 94 ~ 94 (290)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=138.30 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+++.|.|.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999988888888776654
Q ss_pred h
Q 022930 94 S 94 (290)
Q Consensus 94 ~ 94 (290)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1.6e-21 Score=142.57 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc-cc
Q 022930 14 DTYSLLVLNITF------RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF-NF 86 (290)
Q Consensus 14 ~~~~l~V~nL~~------~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~-~~ 86 (290)
..++|||+|||+ ++++++|.++|++||+|..|.|+.++.||.++|||||+|.+.++|++||+.|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 458999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cceehhhhH
Q 022930 87 VHEILKSSL 95 (290)
Q Consensus 87 ~~~~~~~~~ 95 (290)
|.|.+....
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 998877653
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=144.00 Aligned_cols=85 Identities=27% Similarity=0.316 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
......++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||..|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3566789999999999999999999999999999 69999998999999999999999999999999999988
Q ss_pred ccccccceehhhh
Q 022930 82 LNFNFVHEILKSS 94 (290)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (290)
|+++.|.|.+...
T Consensus 90 ~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 90 FQGSKLKVSLARK 102 (113)
T ss_dssp ETTEECEEECSSC
T ss_pred cCCCEEEEEECCC
Confidence 8888888776544
No 40
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=4.1e-21 Score=142.88 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=79.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+....+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44555667789999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cceehhh
Q 022930 87 VHEILKS 93 (290)
Q Consensus 87 ~~~~~~~ 93 (290)
|.|.+..
T Consensus 98 l~V~~a~ 104 (110)
T 1oo0_B 98 IQVDWCF 104 (110)
T ss_dssp CEEEESE
T ss_pred EEEEEcc
Confidence 8877653
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=142.13 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+++.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 87 ~~a~~ 91 (102)
T 2cqb_A 87 NLAKP 91 (102)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 76543
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=4.8e-21 Score=141.52 Aligned_cols=86 Identities=27% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc---cc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL---NF 84 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~---~~ 84 (290)
.+.+....++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..+ .+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 345566779999999999999999999999999999999999999999999999999999999999999999776 67
Q ss_pred cccceehhh
Q 022930 85 NFVHEILKS 93 (290)
Q Consensus 85 ~~~~~~~~~ 93 (290)
+.|.|.+..
T Consensus 86 ~~l~v~~a~ 94 (106)
T 2dgp_A 86 RPIQVKPAD 94 (106)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEECC
Confidence 777776554
No 43
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=6.3e-21 Score=141.45 Aligned_cols=87 Identities=24% Similarity=0.372 Sum_probs=79.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..++.....++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34555667799999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceehhh
Q 022930 87 VHEILKS 93 (290)
Q Consensus 87 ~~~~~~~ 93 (290)
|.|.+..
T Consensus 98 l~V~~a~ 104 (108)
T 2jrs_A 98 MKVGHVT 104 (108)
T ss_dssp CEEECSC
T ss_pred EEEEEcc
Confidence 8887653
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=5.5e-21 Score=143.40 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
...+.++|||+|||+++|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44466899999999999999999999999999999999999899999999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 101 ~a~~ 104 (115)
T 2cpz_A 101 LKRS 104 (115)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 6643
No 45
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=9.9e-21 Score=163.89 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN 85 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~ 85 (290)
++....++|||+|||+.+|+++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|..||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 355668999999999999999966 8999999999999874 788999999999999999999999999999999
Q ss_pred ccceehhhh
Q 022930 86 FVHEILKSS 94 (290)
Q Consensus 86 ~~~~~~~~~ 94 (290)
.|.|.+...
T Consensus 81 ~l~v~~a~~ 89 (282)
T 3pgw_A 81 PMRIQYAKT 89 (282)
T ss_pred EEEEEEecc
Confidence 998866544
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=138.25 Aligned_cols=83 Identities=23% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
.+..+.++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+++.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999997 9999999999999999999999999999998888887
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 91 ~~a~ 94 (100)
T 2do4_A 91 AISN 94 (100)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=7.2e-21 Score=138.05 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=75.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
+++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+...
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998877655
No 48
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-21 Score=137.25 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
.++++|||+|||+++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+++.|.+..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999888887654
No 49
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-22 Score=144.37 Aligned_cols=98 Identities=27% Similarity=0.281 Sum_probs=82.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhhH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSL 95 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~ 95 (290)
++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.|||..|+|+.|.|.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999887764
Q ss_pred Hhhhccccc--cCcceeEEEEeccC
Q 022930 96 FLRKNLYLC--IGFLFFFLIFFILG 118 (290)
Q Consensus 96 ~~~~~~~~~--~~~~~~~l~v~~l~ 118 (290)
......... ......+||||+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 433222222 22335678999986
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.3e-21 Score=138.79 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc----
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF---- 86 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~-~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~---- 86 (290)
...+++|||+|||+++|+++|+++|++||+|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|+++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999999999999999999999999999999998888877
Q ss_pred cceehh
Q 022930 87 VHEILK 92 (290)
Q Consensus 87 ~~~~~~ 92 (290)
|.|.+.
T Consensus 86 l~v~~a 91 (99)
T 2div_A 86 FKLNYA 91 (99)
T ss_dssp CCEEET
T ss_pred EEEeec
Confidence 665544
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=139.68 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
......+|||+|||+++|+++|.++|++||+|..|.|+.++. |.++|||||+|.+.++|+.||. +||..|+|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445568999999999999999999999999999999999976 9999999999999999999999 89999999999987
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 6655
No 52
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=6.6e-21 Score=145.81 Aligned_cols=85 Identities=32% Similarity=0.473 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+.+....++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|.+..
T Consensus 120 V~~a~ 124 (129)
T 2kxn_B 120 VDFSI 124 (129)
T ss_dssp ESCCS
T ss_pred EEEec
Confidence 77653
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=137.96 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=75.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.+......++|||+|||+.+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|++||+.|||..|+++.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345566779999999999999999999999999999999999874 9999999999999999999999999998888888
Q ss_pred ceehh
Q 022930 88 HEILK 92 (290)
Q Consensus 88 ~~~~~ 92 (290)
.|.+.
T Consensus 88 ~V~~a 92 (95)
T 2ywk_A 88 NVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 87654
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=142.03 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=79.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+......++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..||+ .|+++.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 4455667789999999999999999999999999999999999999999999999999999999999999998 788888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 88 l~V~~a~~ 95 (116)
T 2cqd_A 88 ANVNLAYL 95 (116)
T ss_dssp CEEEESTT
T ss_pred EEEEEccc
Confidence 88876644
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1e-20 Score=139.04 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=76.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+.+....++|||+|||+++|+++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445566779999999999999999999999997 999999999999999999999999999999999 89998888888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 85 l~V~~a~~ 92 (103)
T 2dng_A 85 LRVDIAEG 92 (103)
T ss_dssp CEEEECCC
T ss_pred EEEEEecC
Confidence 88766543
No 56
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=9.1e-21 Score=142.84 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
.+..+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ehh
Q 022930 90 ILK 92 (290)
Q Consensus 90 ~~~ 92 (290)
.+.
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1.4e-20 Score=135.34 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+.+....++|||+|||+.+|+++|+++|.+||+|..|.|+.+ ++.++|||||+|.+.++|+.||..|||..|+++.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 445556799999999999999999999999999999999874 889999999999999999999999999888888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 80 v~~a~~ 85 (92)
T 2dgv_A 80 VRIDRN 85 (92)
T ss_dssp CEECSC
T ss_pred EEEcCC
Confidence 766543
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=138.61 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
.+..+.++|||+|||+.+|+++|+++|++||+|..|.|+.+ ++.++|||||+|.+.++|+.||..|||..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557789999999999999999999999999999999987 8999999999999999999999999998888888887
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 76644
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.1e-20 Score=137.83 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc---cccc
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF---NFVH 88 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~---~~~~ 88 (290)
....++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999987 89999999999999999999999999988877 7777
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 91 V~~a~~ 96 (105)
T 2dnh_A 91 VKFADT 96 (105)
T ss_dssp EEESCS
T ss_pred EEECcc
Confidence 765543
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=9.6e-21 Score=134.78 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+++..+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 4456677999999999999999999999999999999999999999999999999999999999997 588788888877
Q ss_pred ee
Q 022930 89 EI 90 (290)
Q Consensus 89 ~~ 90 (290)
|.
T Consensus 84 v~ 85 (87)
T 3s7r_A 84 PK 85 (87)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=139.29 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCC-CCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~t-g~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
.+.+....++|||+|||+++|+++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 344555679999999999999999999999999 999999999888 999999999999999999999 89998888887
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 86 l~V~~a~~ 93 (104)
T 1wi8_A 86 IRVDVADQ 93 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 77766543
No 62
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.84 E-value=2.2e-21 Score=145.60 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc
Q 022930 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN 85 (290)
Q Consensus 6 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~ 85 (290)
..+|++....++|||+|||++||+++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.|||..|+++
T Consensus 7 r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 7 RYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp ----------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 455666678899999999999999999999999999999999865 8999999999999999999999666665
Q ss_pred ccc
Q 022930 86 FVH 88 (290)
Q Consensus 86 ~~~ 88 (290)
.|.
T Consensus 80 ~~~ 82 (115)
T 3beg_B 80 EGE 82 (115)
T ss_dssp TSC
T ss_pred Eee
Confidence 544
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=142.08 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|||+++|+++|+++|++||+|+.|.|+.+. +|.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999997 99999999999999999999999999966666666554
Q ss_pred hh
Q 022930 91 LK 92 (290)
Q Consensus 91 ~~ 92 (290)
+.
T Consensus 82 ~a 83 (116)
T 2fy1_A 82 QA 83 (116)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=138.15 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc-cccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF-LNFNFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~-~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~-~~~~~~ 87 (290)
++....++|||+|||+++|+++|+++|.+ ||+|..|.|+.++ ++.++|||||+|.+.++|+.||..|||.. |+++.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34556789999999999999999999999 9999999999998 99999999999999999999999999988 888887
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 83 ~v~~a~~ 89 (104)
T 2dhg_A 83 RLSVAIP 89 (104)
T ss_dssp CCCBCCC
T ss_pred EEEEccC
Confidence 7766543
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=139.60 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=75.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
........++|||+|||+.+|+++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..|+++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34455667899999999999999999999999999999999986 69999999999999999999999999988888777
Q ss_pred ceehh
Q 022930 88 HEILK 92 (290)
Q Consensus 88 ~~~~~ 92 (290)
.|.+.
T Consensus 87 ~v~~a 91 (114)
T 2do0_A 87 HVKMD 91 (114)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77654
No 66
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=139.38 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
...+..+.++|||+|||+.+|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|+++.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345566779999999999999999999999999999999999999999999999999999999999998 9988888888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 88 ~V~~a~~ 94 (105)
T 2dh8_A 88 DPKPCTP 94 (105)
T ss_dssp BCCCSCC
T ss_pred EEEEccC
Confidence 8766543
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-21 Score=138.52 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
.+++|||+|||+.+|+++|.++|++||+|..| .|+.++.++.++|||||+|.++++|++||..|||..|+++.|.|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99999899999999999999999999999999998888888877665
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 68
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=139.00 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=65.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc
Q 022930 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF 84 (290)
Q Consensus 6 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~ 84 (290)
..++++....++|||+|||+++|+++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.|||..|++
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 6 SGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 355667778899999999999999999999999999999999865 899999999999999999999966655
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=149.02 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G--~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
..++|||+|||+++|+++|.++|++|| +|..|.|+.|+.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999999999887
Q ss_pred hhh
Q 022930 92 KSS 94 (290)
Q Consensus 92 ~~~ 94 (290)
...
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 755
No 70
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=1.8e-21 Score=156.57 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=101.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
++....++|||+|||+++|+++|+++|.+||.|.. .++.+..++.++|||||+|.++++|.+||+ |||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45667899999999999999999999999998866 344555678899999999999999999995 9999999999998
Q ss_pred ehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 90 ILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+...... .......+|||+|||..++.++|...|.++|...
T Consensus 86 ~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 86 EKPKGRDS------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp ECCCCSSC------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred ecCCCccc------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 77654211 2234567899999999999999999999987653
No 71
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=2.5e-20 Score=139.74 Aligned_cols=106 Identities=22% Similarity=0.395 Sum_probs=91.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..+++|||+|||+.+|+++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999865 556899999999999999999999999999999999888
Q ss_pred hhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 93 SSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....... +++.....++|...|++||...
T Consensus 83 ~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 83 NANRAFQ----------------KMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp CHHHHTT----------------TSCHHHHHHHHHHHHHHHCCCC
T ss_pred cCChhhh----------------hhhHhHhHHHHHHHHHHhCCCC
Confidence 7654442 2335677888999999988643
No 72
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=3.9e-20 Score=160.26 Aligned_cols=119 Identities=20% Similarity=0.152 Sum_probs=105.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+..
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred hHHhhhccccccCcceeEEEEeccCccc-chhHHHHHhhccCCch
Q 022930 94 SLFLRKNLYLCIGFLFFFLIFFILGRVV-DGREITVQFAKYGPNA 137 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~~~ 137 (290)
..... .......+|||+|||..+ +.++|...|..||...
T Consensus 174 ~~~~~-----~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 174 AGQLT-----PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT 213 (284)
T ss_dssp GGGCC-----TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS
T ss_pred CCCCC-----cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE
Confidence 53221 223456789999999996 8999999999999754
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.1e-21 Score=138.01 Aligned_cols=81 Identities=28% Similarity=0.435 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCC---CCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~---tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+.++|||+|||+++|+++|+++|++||+|..|.|+.++. |+.++|||||+|.+.++|++||..|||..|+++.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468899999999999999999999999999999998876 66899999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 6644
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=135.94 Aligned_cols=86 Identities=28% Similarity=0.441 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+......++|||+|||+++|+++|+++|++||+|..|.|+.++. .++|||||+|.+.++|+.||..|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3345566779999999999999999999999999999999998853 38999999999999999999999999888888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 85 l~v~~a~~ 92 (103)
T 2cq3_A 85 IEVNNATA 92 (103)
T ss_dssp CEEEECCS
T ss_pred EEEEEccc
Confidence 88876644
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-21 Score=142.06 Aligned_cols=85 Identities=27% Similarity=0.375 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
+.....++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34445689999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 83 ~~a~~ 87 (104)
T 1p1t_A 83 DNAAS 87 (104)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 87765
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=1.7e-20 Score=149.77 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=76.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.|.....+++|||+|||+.||+++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred ceehhh
Q 022930 88 HEILKS 93 (290)
Q Consensus 88 ~~~~~~ 93 (290)
.|.+..
T Consensus 145 ~V~~a~ 150 (165)
T 1rk8_A 145 QVDWCF 150 (165)
T ss_dssp EEEESE
T ss_pred EEEEec
Confidence 776553
No 77
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=5.4e-21 Score=138.35 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+++|+++|+++|.+||.|..+.|+.++.++.++|||||+|.++++|++||+.|||..|+++.|.|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999999999999999999988899999999999999999999999999999999998887765
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=137.08 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=73.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..++.....++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.||+..|+++.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3445566779999999999999999999999999999999964 4568999999999999999999999998888888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 91 l~V~~a~~ 98 (109)
T 1x4a_A 91 LRVEFPRS 98 (109)
T ss_dssp CEEECCCC
T ss_pred EEEEEccc
Confidence 77766543
No 79
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1e-20 Score=137.79 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+.+|+++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|+++.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999988888888999999999999999999999999999999999888877
Q ss_pred hh
Q 022930 91 LK 92 (290)
Q Consensus 91 ~~ 92 (290)
+.
T Consensus 91 ~a 92 (98)
T 2cqp_A 91 LG 92 (98)
T ss_dssp ES
T ss_pred Ec
Confidence 65
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=135.83 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+.+....++|||+|||+.+|+++|+++|++||+|..|.|+.++.+ ++|||||+|.+.++|+.||..|||..|.++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 445667799999999999999999999999999999999988543 689999999999999999999999988888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 876654
No 81
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=133.99 Aligned_cols=79 Identities=25% Similarity=0.445 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCC-cceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~-~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+++|+++|.++|++||+|..|.|+.+..++. ++|||||+|.+.++|++||..|||..|+|+.|.|.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999887766 8999999999999999999999999999998887655
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=136.49 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC--cccccccccee
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--LFLNFNFVHEI 90 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~~~~~~~~~~ 90 (290)
...++|||+|||+.+|+++|+++|++||+|+.|.|+.+ +|||||+|.+.++|+.||+.|++ ..|+|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34689999999999999999999999999999999876 79999999999999999998864 67888888887
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 7654
No 83
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=154.27 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=98.3
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~-~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
.+++|||+|||+ .+|+++|+++|++||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999999875 789999999999999999999999999999998765
Q ss_pred hhHHhh----hc-----------------------cccccCcceeEEEEeccCcccchhHHHHHhhccC-Cc
Q 022930 93 SSLFLR----KN-----------------------LYLCIGFLFFFLIFFILGRVVDGREITVQFAKYG-PN 136 (290)
Q Consensus 93 ~~~~~~----~~-----------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~ 136 (290)
...... .. .......+..+|||+|||..++.++|...|.+|| ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 432100 00 0001123467899999999999999999999998 54
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-21 Score=142.24 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+++|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|.+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999999999999999999999999999 899999999999988776
Q ss_pred hH
Q 022930 94 SL 95 (290)
Q Consensus 94 ~~ 95 (290)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 85
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=144.44 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCc----cc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL----FL 82 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~--v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~----~~ 82 (290)
+......++|||+|||++||+++|+++|.+||.|.. |.|+.|+.||.++|||||+|.+. +|..||..|||. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344556789999999999999999999999999977 99999999999999999999999 999999999998 78
Q ss_pred cccccceehhhh
Q 022930 83 NFNFVHEILKSS 94 (290)
Q Consensus 83 ~~~~~~~~~~~~ 94 (290)
+|+.|.|.+...
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 888877766543
No 86
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=136.49 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~-v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.++....++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|+++|||||+|.++++|++||.. |+..|+++.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 345567799999999999999999999999999987 888888 7999999999999999999999997 9999999998
Q ss_pred ceehhh
Q 022930 88 HEILKS 93 (290)
Q Consensus 88 ~~~~~~ 93 (290)
.|....
T Consensus 87 ~v~~~~ 92 (104)
T 1wg5_A 87 EIFKSS 92 (104)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 886553
No 87
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=2.6e-20 Score=133.00 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|.+...
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 8999999999988876543
No 88
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=137.88 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.......++|||+|||+++|+++|+++|.+||. +.|.|+.++ +++++|||||+|.++++|++||+ +|+..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 345566789999999999999999999999995 499999997 99999999999999999999996 799999998888
Q ss_pred eehh
Q 022930 89 EILK 92 (290)
Q Consensus 89 ~~~~ 92 (290)
|...
T Consensus 86 V~~~ 89 (102)
T 1wez_A 86 LFLN 89 (102)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7654
No 89
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=143.40 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|||+++|+++|+++|+.||+|+.|.|+.++.++.++|||||+|.+.++|.+||..|||..|+++.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44566899999999999999999999999999999999999999999999999999999999999999977777766665
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 118 ~a~ 120 (139)
T 1u6f_A 118 LAA 120 (139)
T ss_dssp ESS
T ss_pred ECC
Confidence 543
No 90
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=4.2e-20 Score=146.12 Aligned_cols=81 Identities=25% Similarity=0.477 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
....++|||+|||++||+++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|++||..||+..|+++.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999666666666554
Q ss_pred h
Q 022930 92 K 92 (290)
Q Consensus 92 ~ 92 (290)
.
T Consensus 116 a 116 (156)
T 1h2v_Z 116 D 116 (156)
T ss_dssp E
T ss_pred C
Confidence 4
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=134.01 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
+..+.++|||+|||+.+++++|+ ++|++||+|..|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34467899999999999999999 99999999999999988755 889999999999999999999998888888
Q ss_pred cceehhh
Q 022930 87 VHEILKS 93 (290)
Q Consensus 87 ~~~~~~~ 93 (290)
|.|.+..
T Consensus 82 l~V~~a~ 88 (96)
T 2dgx_A 82 ILVSLAT 88 (96)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 8877654
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=137.22 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccC-CCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~-~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
+......++|||+|||+++|+++|+++|++|| |..|.|+.++ .+|.++|||||+|.+.++|+.|| .|||..|+|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556779999999999999999999999999 9999999998 68999999999999999999999 899998888888
Q ss_pred ceehh
Q 022930 88 HEILK 92 (290)
Q Consensus 88 ~~~~~ 92 (290)
.|.+.
T Consensus 91 ~V~~a 95 (100)
T 2j76_E 91 RVDVA 95 (100)
T ss_dssp CCEEC
T ss_pred EEEec
Confidence 87655
No 93
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=131.06 Aligned_cols=73 Identities=25% Similarity=0.456 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc-cc
Q 022930 15 TYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN-FV 87 (290)
Q Consensus 15 ~~~l~V~nL~~~~------t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~-~~ 87 (290)
+++|||+|||+.+ |+++|.++|++||+|..|.|+ +.+|.++|||||+|.+.++|+.||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46899999999999999999999999999999888 77
Q ss_pred ce
Q 022930 88 HE 89 (290)
Q Consensus 88 ~~ 89 (290)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 64
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.1e-20 Score=129.86 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
+..|||+||++.+|+++|+++|.+||+|..|.|+.. +|||||+|.++++|.+||+.||+..|+++.|.|.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 578999999999999999999999999999999763 899999999999999999999999999999998766
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=7.5e-20 Score=139.05 Aligned_cols=84 Identities=27% Similarity=0.380 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
+.....++|||+|||+.+++++|+++|++||+|..|.|+.+. +|.++|||||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999997 9999999999999999999999999999999999888
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 109 ~~a~~ 113 (124)
T 2kt5_A 109 QLVAS 113 (124)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 76644
No 96
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.5e-20 Score=133.84 Aligned_cols=85 Identities=28% Similarity=0.489 Sum_probs=75.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.+......++|||+|||+.+|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||. ++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34556677899999999999999999999999999999999999999999999999999999999999 4767888888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 86 ~v~~a~~ 92 (103)
T 2cqg_A 86 DCKLPNS 92 (103)
T ss_dssp EEECCCT
T ss_pred EEEecCC
Confidence 7766544
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.9e-20 Score=129.35 Aligned_cols=74 Identities=28% Similarity=0.440 Sum_probs=69.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
+|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ |||..|+|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 59999999999999999999999999999999998899999999999999999999998 999999998887653
No 98
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=3.4e-20 Score=148.44 Aligned_cols=110 Identities=22% Similarity=0.301 Sum_probs=94.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
++.++|||+|||+.+|+++|.++|++| | .|..+.+..+ +|||||+|.++++|+.|| .|||..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 456899999999999999999999999 6 7777777654 899999999999999999 799999
Q ss_pred ccccccceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 82 LNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
|.|+.|.+.+.... .......+|||+|||..++.++|...|.+||...
T Consensus 75 ~~g~~i~v~~~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY--------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp ETTEECEEECCSSC--------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ecCceeeecCCccc--------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 99999988764321 1123367899999999999999999999999864
No 99
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=1.9e-20 Score=144.15 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN 85 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~ 85 (290)
.++..+.++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+++
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 355667899999999999999999999999999 89999999976 9999999999999999999999 999999999
Q ss_pred ccceehhhh
Q 022930 86 FVHEILKSS 94 (290)
Q Consensus 86 ~~~~~~~~~ 94 (290)
.|.|.....
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999876644
No 100
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=134.54 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCc--cccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL--FLNF 84 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~--~~~~ 84 (290)
..+.....+.+|||+|||+.+|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|..||+.|++. .|+|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 44455566789999999999999999999999999999999865 799999999999999999988764 4788
Q ss_pred cccceehhhh
Q 022930 85 NFVHEILKSS 94 (290)
Q Consensus 85 ~~~~~~~~~~ 94 (290)
+.|.|.+...
T Consensus 81 r~l~V~~a~~ 90 (104)
T 1wex_A 81 QQAFFNYSTS 90 (104)
T ss_dssp SBCEEEECSS
T ss_pred EEEEEEEccC
Confidence 8887776644
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=142.03 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred eh
Q 022930 90 IL 91 (290)
Q Consensus 90 ~~ 91 (290)
.+
T Consensus 138 ~~ 139 (140)
T 2ku7_A 138 NL 139 (140)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 102
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=138.19 Aligned_cols=86 Identities=15% Similarity=0.312 Sum_probs=77.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
....+..+.++|||+|||+++|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||. ||+..|+
T Consensus 3 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 3 KLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CCCCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCcCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 34456677899999999999999999999999998 89999999976 9999999999999999999999 9999999
Q ss_pred ccccceehhhh
Q 022930 84 FNFVHEILKSS 94 (290)
Q Consensus 84 ~~~~~~~~~~~ 94 (290)
++.|.|.....
T Consensus 81 gr~i~V~~a~~ 91 (107)
T 2lmi_A 81 QRYVEVYEINN 91 (107)
T ss_dssp SSCCCCEECCH
T ss_pred CeEEEEEECCH
Confidence 99998876654
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=3.3e-20 Score=139.79 Aligned_cols=84 Identities=17% Similarity=0.283 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN 85 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~ 85 (290)
.++..+.++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|+++
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 345567799999999999999999999999999 89999999876 9999999999999999999999 999999999
Q ss_pred ccceehhhh
Q 022930 86 FVHEILKSS 94 (290)
Q Consensus 86 ~~~~~~~~~ 94 (290)
.|.|.+...
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 998876543
No 104
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.81 E-value=8.3e-20 Score=158.86 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=94.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+......++|||+|||+.+|+++|.++|+.||+|..|.|+.+..+ .+|||||+|.+.++|..||. |||..|+|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 344566899999999999999999999999999999999988633 47999999999999999996 999999999998
Q ss_pred eehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccC-Cc
Q 022930 89 EILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYG-PN 136 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~ 136 (290)
+.+. ...+|||+|||..++..+|...|..|| ..
T Consensus 112 v~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 112 VSHL---------------TECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp EEEC---------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEEC---------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 8754 467899999999999999999999999 54
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=135.88 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q 022930 9 PPDIRDTYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL 82 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~------t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~ 82 (290)
+......++|||+|||+.+ |+++|.++|++||+|..|.|+ ..+|.++|||||+|.+.++|+.||..|||..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3344557899999999999 789999999999999999998 46899999999999999999999999999999
Q ss_pred ccc-ccceehh
Q 022930 83 NFN-FVHEILK 92 (290)
Q Consensus 83 ~~~-~~~~~~~ 92 (290)
+|+ .|.|.+.
T Consensus 87 ~g~~~l~V~~a 97 (105)
T 2nlw_A 87 DKQHTFRVNLF 97 (105)
T ss_dssp STTCEEEEECS
T ss_pred CCCceEEEEEc
Confidence 987 8877654
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=131.14 Aligned_cols=81 Identities=15% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
++....++|||+|||+++|+++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|++||. |||..|+|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 445567899999999999999999999999 9999999998 799999999999999999999999 9999999988887
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 82 ~~a~ 85 (91)
T 2dgw_A 82 FREK 85 (91)
T ss_dssp EEES
T ss_pred EECC
Confidence 6653
No 107
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-20 Score=143.10 Aligned_cols=84 Identities=13% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
.+..+.++|||+|||+++|+++|.++|.+||.|..+.++.+..+|.++|||||+|.+.++|++||. |||..|+++.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999999886666777899999999999999999999999 9999999999998
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 76654
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.3e-20 Score=137.13 Aligned_cols=84 Identities=17% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEcccCCCC---CcceEEEEEEccHHHHHHHHHHhCCccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGLFLNF 84 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~---~~F~~~G~I~~v~i~~d~~tg---~~~g~afV~F~~~~~a~~Al~~l~g~~~~~ 84 (290)
.....++|||+|||+.+++++|. ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 45567899999999999999999 999999999999999887654 556999999999999999999999988888
Q ss_pred cccceehhhh
Q 022930 85 NFVHEILKSS 94 (290)
Q Consensus 85 ~~~~~~~~~~ 94 (290)
+.|.|.+...
T Consensus 91 r~l~V~~a~~ 100 (111)
T 2cpi_A 91 RTLKASLGTT 100 (111)
T ss_dssp EEEEEESCCC
T ss_pred EEEEEEeccc
Confidence 8888876654
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=1.5e-20 Score=145.02 Aligned_cols=86 Identities=47% Similarity=0.742 Sum_probs=78.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 8 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.+++..+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 35566677899999999999999999999999999999999998899999999999999999999999999988888887
Q ss_pred ceehhh
Q 022930 88 HEILKS 93 (290)
Q Consensus 88 ~~~~~~ 93 (290)
.|.+..
T Consensus 120 ~V~~a~ 125 (135)
T 2lea_A 120 RVQMAR 125 (135)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776654
No 110
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-20 Score=138.21 Aligned_cols=82 Identities=22% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I-~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
...+.++|||+|||+.+|+++|+++|++||.| ..|.|+.++ +|.++|||||+|.+.++|++||.. |+..|+++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 899999998 999999999999999999999996 999999999988
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 76644
No 111
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.81 E-value=6.8e-20 Score=159.37 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=97.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+.+|+++|.++|.+|| +|..|.|+.+.. |.++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998864 888999999999999999999999999999999998876
Q ss_pred hhHHhhhccccccCcceeEEEEeccCcc-cchhHHHHHhhccCCch
Q 022930 93 SSLFLRKNLYLCIGFLFFFLIFFILGRV-VDGREITVQFAKYGPNA 137 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~~~ 137 (290)
.+....... ........+|||+|||.. ++.++|...|.+||...
T Consensus 195 ~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 195 NPLEKSKRT-DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp CCC----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred CCCcccccc-cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 653222211 123345678999999999 99999999999999864
No 112
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=136.20 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
++...+.++|||+|||+++|+++|+++|++| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|+++.|.
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3445556899999999999999999999999 899999999964 999999999999999999999 5999999999998
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.....
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 865544
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=132.23 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC--Ccccccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GLFLNFNFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~--g~~~~~~~~ 87 (290)
.....+++|||+|||+.+|+++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.||+.|+ +..|.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999999865 7999999999999999999774 667888888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 84 ~V~~a~~ 90 (101)
T 2cq1_A 84 YIQYSNH 90 (101)
T ss_dssp EEEECSC
T ss_pred EEEEcCc
Confidence 8776654
No 114
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=132.43 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc--ccccccce
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF--LNFNFVHE 89 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~--~~~~~~~~ 89 (290)
..++.+|||+|||+.+|+++|.++|++||+|..|.|+.. +|||||+|.+.++|.+||..||+.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999999864 7999999999999999999999865 67888888
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+++.
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 77643
No 115
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=7.2e-20 Score=149.91 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=94.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL 82 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~ 82 (290)
..++|||+|||+.+|+++|.++|++| | .|..+.+. .++|||||+|.++++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666664 34899999999999999999 7999999
Q ss_pred cccccceehhhhHHhhhc------------cccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 83 NFNFVHEILKSSLFLRKN------------LYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.|+.|.|.+......... ..........+|||+|||..++.++|...|.+||...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 999999876544211110 0111234568899999999999999999999999763
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=127.88 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh-CCcccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGLFLNFN 85 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~~~~~ 85 (290)
..++.....++|||+|||+.+|+++|+++|.+||+|..|.|+.+ +|||||+|.+.++|+.||..| ||..|+|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 34556667789999999999999999999999999999999875 799999999999999999988 99888888
Q ss_pred ccceehh
Q 022930 86 FVHEILK 92 (290)
Q Consensus 86 ~~~~~~~ 92 (290)
.|.|.+.
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 8887653
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-20 Score=135.21 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEc-ccCCCCCcceEEEEEEccHHHHHHHHHHhC--Cccccccccc
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIP-RDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GLFLNFNFVH 88 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~-I~~v~i~-~d~~tg~~~g~afV~F~~~~~a~~Al~~l~--g~~~~~~~~~ 88 (290)
.+.++|||+|||+.+|+++|.++|.+||+ |..|.|+ .+..+|.++|||||+|.+.++|+.||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 788889999999999999999999999996 5888888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 776644
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=134.96 Aligned_cols=76 Identities=22% Similarity=0.475 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
....+.++|||+|||+.+|+++|+++|.+||+|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..|++..
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 344567899999999999999999999999999999999997 9999999999999999999999999999886544
No 119
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-20 Score=134.18 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCc--cccccccc
Q 022930 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGL--FLNFNFVH 88 (290)
Q Consensus 12 ~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~--~~~~~~~~ 88 (290)
..++++|||+|||+ .+|+++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.||+.||+. .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34578999999999 9999999999999999999999876 689999999999999999999864 47888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 86 V~~a~~ 91 (102)
T 1x4d_A 86 VHLSQK 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 776653
No 120
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=146.58 Aligned_cols=84 Identities=27% Similarity=0.376 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+.+++++|+++|++||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+++.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999997 99999999999999999999999999999999999988
Q ss_pred hhhhH
Q 022930 91 LKSSL 95 (290)
Q Consensus 91 ~~~~~ 95 (290)
+....
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 76553
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=6.3e-20 Score=136.25 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
...+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999976 588888888776
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 553
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=2.2e-20 Score=133.76 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
++|||+|||+++++++|.++|++||+|..|.|+.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999 9999999999999999999877655
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-20 Score=129.27 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
++|||+|||+++|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|++||..++ ..|+|+.|.|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 479999999999999999999999999999999999899999999999999999999999999 899999888754
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=135.91 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC--ccccccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--LFLNFNFVH 88 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~~~~~~~~ 88 (290)
...++++|||+|||+.+|+++|+++|++||+|+.|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445789999999999999999999999999999999876 79999999999999999999884 578888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 877654
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=132.24 Aligned_cols=82 Identities=30% Similarity=0.438 Sum_probs=73.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+....+.++|||+|||+.+|+++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.|||..|+++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 34455667789999999999999999999999999999999865 799999999999999999999999898888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 81 l~v~~a~~ 88 (99)
T 2cpj_A 81 LRVRFACH 88 (99)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 88876644
No 126
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=6e-20 Score=154.10 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G--~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
..++|||+||+++||+++|+++|.+|| +|+.|.|+.++.+++++|||||+|.+.++|++||+.|||+.|+++.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999887
Q ss_pred hhh
Q 022930 92 KSS 94 (290)
Q Consensus 92 ~~~ 94 (290)
...
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 655
No 127
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.80 E-value=2.6e-19 Score=155.12 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=93.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+.+|+++|.++|.+|| |..|.| +.++|||||+|.++++|..||..|||..|.|+.|.+.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~- 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ- 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-
Confidence 568999999999999999999999999 999988 345899999999999999999999999999999988753
Q ss_pred hHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 94 SLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..++.++|...|..||...
T Consensus 93 -------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~ 123 (284)
T 3smz_A 93 -------------PTDALLCVANLPPSLTQQQFEELVRPFGSLE 123 (284)
T ss_dssp -------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred -------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCee
Confidence 2457899999999999999999999999854
No 128
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2e-19 Score=142.40 Aligned_cols=84 Identities=45% Similarity=0.699 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33456899999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 6543
No 129
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=129.39 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc--cccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN--FNFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~--~~~~ 87 (290)
......++|||+|||+++|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.|||..|. ++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34455689999999999999999999999999999999865 789999999999999999999998888 7888
Q ss_pred ceehhh
Q 022930 88 HEILKS 93 (290)
Q Consensus 88 ~~~~~~ 93 (290)
.|.+..
T Consensus 86 ~V~~a~ 91 (97)
T 1why_A 86 RVDFAK 91 (97)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 877654
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=127.95 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|||+++|+++|+++|++||+|..|.|+ +|||||+|.+.++|+.||..|||..|+++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44567899999999999999999999999999999997 5799999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 6543
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=137.04 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF 84 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~ 84 (290)
+++...+++|||+|||+.+++++|+ ++|++||+|..|.|. .++.++|||||+|.+.++|..||..|||..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4455667899999999999999875 699999999998885 368889999999999999999999999999999
Q ss_pred cccceehhhh
Q 022930 85 NFVHEILKSS 94 (290)
Q Consensus 85 ~~~~~~~~~~ 94 (290)
+.|.|.+...
T Consensus 100 r~l~V~~a~~ 109 (127)
T 2a3j_A 100 NPLVITFSET 109 (127)
T ss_dssp SCCEEEECCC
T ss_pred CEEEEEEccC
Confidence 9998877654
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.8e-19 Score=132.33 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=67.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
.++......++|||+|||+++|+++|+++|.+||+|..|.|+ +|||||+|.+.++|++||+.|||..|+++.
T Consensus 3 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 445556677899999999999999999999999999999997 459999999999999999999997666666
Q ss_pred cceehh
Q 022930 87 VHEILK 92 (290)
Q Consensus 87 ~~~~~~ 92 (290)
|.|.+.
T Consensus 75 l~v~~a 80 (103)
T 2dgu_A 75 IEIVFA 80 (103)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 665544
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.2e-19 Score=137.94 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
.++|||+|||+++|+++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.|| .|||..|+|+.|.|.+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 479999999999999999999999999999999999899999999999999999999999 799988888888876654
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-19 Score=136.65 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..++|||+|||+++|+++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||.. |+..|+++.|.|.+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 348999999999999999999999999999999999999999999999999999999999997 9988888888776654
Q ss_pred h
Q 022930 94 S 94 (290)
Q Consensus 94 ~ 94 (290)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=1.3e-19 Score=134.48 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
.+...++|||+|||+++|+++|+++|++|| +|..|.|+.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 444578999999999999999999999999 9999998632 46899999999999999999999999888888887
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 100 ~~a~ 103 (111)
T 2jvr_A 100 ERDD 103 (111)
T ss_dssp EESC
T ss_pred EECC
Confidence 6553
No 136
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=134.07 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+++|+++|+++|++||+|..|.|+.+. +.++|||||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999884 448999999999999999999999999999988887
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 102 ~~a~ 105 (109)
T 2err_A 102 NNAT 105 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7653
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-20 Score=135.92 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+++|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |||..|+|+.|.|.+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 36789999999999999999999999999988 667777789999999999999999999999 9998888888887765
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 138
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=130.68 Aligned_cols=81 Identities=20% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+++|+++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||..|||..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355567999999999999999999999999987 56665 68999999999999999999999999998888888887
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 86 ~~a~~ 90 (101)
T 2fc9_A 86 ELQGP 90 (101)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 76644
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.2e-20 Score=126.13 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
+|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||. +++..|+|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999 488888888877643
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=127.06 Aligned_cols=78 Identities=29% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
++.....++|||+|||+.+|+++|+++|++||+|..|.|+ ++||||+|.+.++|++||..|||..|+++.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3455677999999999999999999999999999999997 34999999999999999999999888888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 76 V~~a~~ 81 (92)
T 2dgt_A 76 VQLSTS 81 (92)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 776644
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=128.39 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|||+++|+++|+++|.+||.|. +.|+. +.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999997 66654 4678999999999999999999999999988888876
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 90 ~a~ 92 (97)
T 2e5j_A 90 LAR 92 (97)
T ss_dssp ECC
T ss_pred EcC
Confidence 653
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=1.7e-19 Score=130.93 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFN 85 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~ 85 (290)
++...+++|||+|||+++|+++|+ ++|++||+|..|.|+. +|.++|||||+|.+.++|+.|+..|||..|+|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 455677999999999999999999 9999999999999873 577789999999999999999999999999998
Q ss_pred ccceehhhh
Q 022930 86 FVHEILKSS 94 (290)
Q Consensus 86 ~~~~~~~~~ 94 (290)
.|.|.+...
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 888876644
No 143
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=129.40 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=71.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.+.....++|||+|||+++|+++|+++|.+|+ .|.|+.++.++.++|||||+|.+.++|++||..|||..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556778999999999999999999999874 577778888999999999999999999999999999888887777
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 86 V~~a~~ 91 (102)
T 2fc8_A 86 LDWAKP 91 (102)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 766543
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=132.64 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
....++|||+|||+.+|+++|+++|++||.|..|.|+.. +|||||+|.+.++|+.||..|||..|+++.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999998754 78999999999999999999999999999998876
Q ss_pred hhh
Q 022930 92 KSS 94 (290)
Q Consensus 92 ~~~ 94 (290)
...
T Consensus 81 a~~ 83 (111)
T 1whx_A 81 API 83 (111)
T ss_dssp EET
T ss_pred CCC
Confidence 644
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-20 Score=136.97 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|||+++|+++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|+.||..|||..|+++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 33456899999999999999999999999999433332222378899999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 6543
No 146
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=4.4e-19 Score=134.41 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~--~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
++....++|||+|||+++|+++|+++|++| .|+ .|.|+.++. |.++|||||+|.++++|++||+ +++..|+++.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 345567899999999999999999999999 677 899999976 9999999999999999999999 47799999998
Q ss_pred ceehhh
Q 022930 88 HEILKS 93 (290)
Q Consensus 88 ~~~~~~ 93 (290)
.|....
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 886553
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=1.2e-19 Score=140.18 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|+++.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445668999999999999999999999999 77999999975 999999999999999999999 689999999888876
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
...
T Consensus 119 ~a~ 121 (139)
T 2hgn_A 119 LNS 121 (139)
T ss_dssp ECC
T ss_pred ECC
Confidence 553
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=135.35 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I----~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.+.++|||+|||+++|+++|+++|++||+| ..|.|+.+ .+|+++|||||+|.+.++|++||.. |+..|+++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 68999988 5899999999999999999999995 99999999888
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|....
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 76553
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=1e-18 Score=126.92 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=68.0
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 10 PDIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
.....+++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|+.||..|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455779999999998 99999999999999999999984 78999999999999999999999999998888
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|.+..
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 76653
No 150
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=125.52 Aligned_cols=75 Identities=24% Similarity=0.419 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceeh
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
....++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|+.||..|||..|+++.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4456889999999999999999999999999999997 34999999999999999999999888888888776
Q ss_pred hhh
Q 022930 92 KSS 94 (290)
Q Consensus 92 ~~~ 94 (290)
...
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 151
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=130.14 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+.+|+++|+++|.+||+|..|.|+.+ +|||||+|.+.++|+.||..|||..|+|+.|.|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35689999999999999999999999999999999876 799999999999999999999998888888887766
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
..
T Consensus 97 ~~ 98 (109)
T 1x4g_A 97 KE 98 (109)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=7.4e-19 Score=130.18 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+++|+++|+++|++||+|..|.|+ +|||||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567899999999999999999999999999999997 689999999999999999999999998888888
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 98 ~~a~~ 102 (108)
T 2jvo_A 98 VYSKL 102 (108)
T ss_dssp ESCSC
T ss_pred EEecC
Confidence 76643
No 153
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.6e-19 Score=128.20 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+++|+++|+++|++||.|..|.|+.. +|||||+|.+.++|+.||..|||..|+|+.|.|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4689999999999999999999999999999999843 799999999999999999999999988888887654
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-20 Score=140.20 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL 82 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~ 82 (290)
+..+.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..|||..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456689999999999999999999999999998 89999988999999999999999999999999999666
Q ss_pred cccccceehhhh
Q 022930 83 NFNFVHEILKSS 94 (290)
Q Consensus 83 ~~~~~~~~~~~~ 94 (290)
+++.|.|.+...
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 666666555443
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=2.3e-19 Score=131.50 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
|+.....++|||+|||+++|+++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++|+.||. ++..|+|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3444566899999999999999999999999999999999998 99999999999999999999999 88888888887
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|....
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 65443
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-19 Score=132.18 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC--ccccccccc
Q 022930 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--LFLNFNFVH 88 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~~~~~~~~ 88 (290)
...+++|||+|||++ +|+++|.++|++||+|..|.|+.. +|||||+|.+.++|+.||+.||+ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999754 79999999999999999998864 558888888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 776643
No 157
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=124.91 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~--G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
......++|||+|||+.+|+++|+++|.+| |.|..|.++ +|||||+|.+.++|+.||..|||..|+++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999886 6799999999999999999999988888888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 82 ~v~~a~~ 88 (99)
T 2cpd_A 82 EVTLAKP 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 7776643
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-18 Score=126.43 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 11 DIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
...+.++|||+|||+ .+|+++|.++|.+||+|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999 99999999999999999999985 689999999999999999999997777777776
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 78 ~~a~ 81 (96)
T 2kvi_A 78 EVSS 81 (96)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 6553
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.2e-19 Score=132.35 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=71.2
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHH----HHHHHH--HhCCcc
Q 022930 16 YSLLVLNI----TFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADE----AQKAVD--RLDGLF 81 (290)
Q Consensus 16 ~~l~V~nL----~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~----a~~Al~--~l~g~~ 81 (290)
+.|||+|| |+.|++++|+++|..||+|.+|.++.|+.||.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred ccccccceehhhh
Q 022930 82 LNFNFVHEILKSS 94 (290)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (290)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999876654
No 160
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-19 Score=128.48 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=71.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 7 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
...+.....++|||+|||+.+|+++|+++|.+||.|..| ..++.++|||||+|.+.++|+.||..|||..|+|+.
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344455677999999999999999999999999988766 357889999999999999999999999998888888
Q ss_pred cceehhh
Q 022930 87 VHEILKS 93 (290)
Q Consensus 87 ~~~~~~~ 93 (290)
|.|.+..
T Consensus 83 l~v~~a~ 89 (96)
T 1fjc_A 83 VSLYYTG 89 (96)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 8876653
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=130.78 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCC---CCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~t---g~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.....++|||+|||+++|+++|+++|++||+|. +.++.+..+ |.++|||||+|.+.++|++||+.|++ ++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345578999999999999999999999999999 888888777 79999999999999999999999843 455544
Q ss_pred ce
Q 022930 88 HE 89 (290)
Q Consensus 88 ~~ 89 (290)
.+
T Consensus 81 ~~ 82 (114)
T 2dnl_A 81 LC 82 (114)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-19 Score=129.62 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=63.8
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc-----cc
Q 022930 12 IRDTYSLLV--LNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL-----NF 84 (290)
Q Consensus 12 ~~~~~~l~V--~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~-----~~ 84 (290)
...+.+||| +||++.+|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 779999999999999999999999988754 79999999999999999999999776 44
Q ss_pred cccceehh
Q 022930 85 NFVHEILK 92 (290)
Q Consensus 85 ~~~~~~~~ 92 (290)
..|.+.|.
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 55554443
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=123.57 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=66.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+++|+++|+++|.+||+|..| +.++.++. ||||+|.+.++|++||. |||..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34456899999999999999999999999999987 55555665 99999999999999999 99988888888776
Q ss_pred hh
Q 022930 91 LK 92 (290)
Q Consensus 91 ~~ 92 (290)
+.
T Consensus 78 ~a 79 (94)
T 2e5g_A 78 PR 79 (94)
T ss_dssp CS
T ss_pred EC
Confidence 44
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=124.30 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+.....++|||+|||+++|+++|+++|.+||+|..| .|+.++.++ .|||+|.+.++|+.||..|||..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344456899999999999999999999999999999 588776544 499999999999999999999999998888
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 86 V~~a~~ 91 (96)
T 2e44_A 86 VAYIPD 91 (96)
T ss_dssp EEECCC
T ss_pred EEEcCc
Confidence 876543
No 165
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=2.4e-18 Score=127.90 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
....++|||+|||+. +|+++|+++|++||+|..|.| ++|||||+|.+.++|+.||..|||..|+++.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 334589999999999 999999999999999999998 37899999999999999999999988888777776
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 96 ~a~ 98 (110)
T 1wf1_A 96 MAG 98 (110)
T ss_dssp ESC
T ss_pred ECC
Confidence 553
No 166
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-19 Score=126.05 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=66.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC-ccccccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-LFLNFNFVH 88 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~-I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g-~~~~~~~~~ 88 (290)
.....++|||+|||+++|+++|+++|++||. |..+.|. .+|||||+|.+.++|+.||+.||| ..|+++.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3445688999999999999999999999999 6655553 378999999999999999999999 999999988
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.+...
T Consensus 77 v~~a~~ 82 (93)
T 2cqh_A 77 VDYSVS 82 (93)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 876644
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7.8e-18 Score=133.60 Aligned_cols=83 Identities=27% Similarity=0.405 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ehh
Q 022930 90 ILK 92 (290)
Q Consensus 90 ~~~ 92 (290)
.+.
T Consensus 162 ~~a 164 (166)
T 3md3_A 162 NWA 164 (166)
T ss_dssp EES
T ss_pred Eec
Confidence 765
No 168
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=5.8e-18 Score=132.86 Aligned_cols=80 Identities=28% Similarity=0.333 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
+......++|||+|||+.+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556789999999999999999999999999999999876 489999999999999999999999988888888
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|.+..
T Consensus 142 v~~a~ 146 (150)
T 2i2y_A 142 VELSN 146 (150)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 77653
No 169
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.9e-19 Score=137.92 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEE--Eccc---CCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVF--IPRD---RRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~--i~~d---~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
...+++|||+|||+.||+++|.++|.+||.|..|. ++.+ ..+|.++|||||+|.+.++|..||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987741 1111 247899999999999999999999999998888888
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.|.+...
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 88776643
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1e-17 Score=126.43 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceE-EEEEEccHHHHHHHHHHhCCccccc--cccc
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGLFLNF--NFVH 88 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~-afV~F~~~~~a~~Al~~l~g~~~~~--~~~~ 88 (290)
+.....|||+||++.||+++|+++|++||+|..|.|+.. .|| |||+|.+.++|..||+.|||..|.+ ..|.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 334455789999999999999999999999999998642 386 9999999999999999999988876 4677
Q ss_pred eehhhh
Q 022930 89 EILKSS 94 (290)
Q Consensus 89 ~~~~~~ 94 (290)
|.++..
T Consensus 96 V~~Ak~ 101 (124)
T 2e5i_A 96 IEYARP 101 (124)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 766544
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=118.48 Aligned_cols=71 Identities=24% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCcE-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 14 DTYS-LLVLNITFRTTADD----LFPLFEKY-GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 14 ~~~~-l~V~nL~~~~t~~~----L~~~F~~~-G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
++.| |||+|||+.+++++ |+++|++| |+|..| ++ |||||+|.+.++|+.|++.|||..|.|+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599887 33 999999999999999999999988888888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.+.+...
T Consensus 77 ~v~~A~~ 83 (96)
T 2diu_A 77 IVSFTPK 83 (96)
T ss_dssp EEESSCC
T ss_pred EEEecCC
Confidence 8877654
No 172
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=120.38 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccce
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHE 89 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~ 89 (290)
......++|||+|| ++|+++|+++|.+||+|..|.|. .++|||||+|.+.++|++||..|||..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999995 34899999999999999999999998888888887
Q ss_pred ehhhh
Q 022930 90 ILKSS 94 (290)
Q Consensus 90 ~~~~~ 94 (290)
.+...
T Consensus 82 ~~a~~ 86 (97)
T 1x5p_A 82 NIARK 86 (97)
T ss_dssp ECCSS
T ss_pred EECCC
Confidence 76644
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=6.2e-18 Score=120.02 Aligned_cols=71 Identities=28% Similarity=0.485 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
...++|||+|||+++|+++|+++|.+| | +|..|.|+.+ +|||||+|.+.++|++|| .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 9999999866 799999999999999999 899999
Q ss_pred cccccccee
Q 022930 82 LNFNFVHEI 90 (290)
Q Consensus 82 ~~~~~~~~~ 90 (290)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999888764
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=8.9e-18 Score=132.02 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc--ccc
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF--NFV 87 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~--~~~ 87 (290)
+++....+|||+||++.+|+++|+++|++||+|+.|.|+.. ..+|||||+|.+.++|+.|++.|||..|.+ ..|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34455678999999999999999999999999999998643 247899999999999999999999998855 888
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.|.+...
T Consensus 117 ~V~~Ak~ 123 (164)
T 1sjr_A 117 RIDFSKL 123 (164)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 8877654
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.1e-17 Score=126.84 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceE-EEEEEccHHHHHHHHHHhCCccccc--ccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGLFLNF--NFV 87 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~-afV~F~~~~~a~~Al~~l~g~~~~~--~~~ 87 (290)
.+.....|||+||++.+|+++|+++|++||+|..|.|+... +|| |||+|.+.++|+.|++.|||..|.+ ..|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 34455678999999999999999999999999999887642 688 9999999999999999999998877 778
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
.+.|++.
T Consensus 99 rI~~ak~ 105 (130)
T 3zzy_A 99 RIDFSKL 105 (130)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 8777654
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.8e-17 Score=137.40 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+.+|+++|+++|++||+|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 177
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=1.7e-17 Score=132.63 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
....+|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34688999999999999999999999999999999999889999999999999999999999999999999988887653
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=6.2e-18 Score=120.43 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+.+++++|+++|.+| +|..|.|. .++|||||+|.+.++|+.||+.|||..|+|+.|.|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 45789999999999999999999999 99999885 45899999999999999999999999999998887665
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=3.1e-17 Score=134.12 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56689999999999999999999999999999999999889999999999999999999999999999888888887765
Q ss_pred h
Q 022930 93 S 93 (290)
Q Consensus 93 ~ 93 (290)
.
T Consensus 192 ~ 192 (198)
T 2yh0_A 192 S 192 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=117.17 Aligned_cols=74 Identities=36% Similarity=0.403 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccc--cccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFL--NFNFVH 88 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~--~~~~~~ 88 (290)
.....++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++ |++..+ .+..|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3445689999999999999999999999999999999875 58999999999999883 566544 366666
Q ss_pred eehhh
Q 022930 89 EILKS 93 (290)
Q Consensus 89 ~~~~~ 93 (290)
|.+..
T Consensus 78 v~~a~ 82 (89)
T 3d2w_A 78 ISNAE 82 (89)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 55443
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=7.1e-17 Score=128.41 Aligned_cols=80 Identities=36% Similarity=0.482 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc--cccce
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF--NFVHE 89 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~--~~~~~ 89 (290)
....++|||+|||+.+|+++|.++|++||+|..|.|+.+..++.++|||||+|.+.++|..|+..|||..|+| ..|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999998877 77766
Q ss_pred eh
Q 022930 90 IL 91 (290)
Q Consensus 90 ~~ 91 (290)
.+
T Consensus 166 ~~ 167 (168)
T 1b7f_A 166 RL 167 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 182
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=4.3e-17 Score=135.33 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
...+|||+|||+.+|+++|+++|++||.|+.|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.+..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 34689999999999999999999999999999999884 4579999999999999999999999999999999997765
Q ss_pred h
Q 022930 94 S 94 (290)
Q Consensus 94 ~ 94 (290)
.
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 5
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.9e-17 Score=131.78 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
..+|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|.+||+ |||..|+|+.|.|.+..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 5689999999999999999999999999999999998899999999999999999999999 89999999888877653
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=5e-17 Score=132.67 Aligned_cols=81 Identities=30% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
...++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.+.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988999999999999999999999996 898999998888766
Q ss_pred hh
Q 022930 93 SS 94 (290)
Q Consensus 93 ~~ 94 (290)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 55
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.2e-16 Score=117.30 Aligned_cols=82 Identities=23% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEcccCCC-CCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 13 RDTYSLLVLNITF-----RTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 13 ~~~~~l~V~nL~~-----~~t~~~L~~~F~~~G~I~~v~i~~d~~t-g~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
..+.+|+|.||.. +.++++|+++|++||+|..|.|+.++.+ +.++|||||+|.++++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468899999963 2378999999999999999999988654 688999999999999999999999999999999
Q ss_pred cceehhhh
Q 022930 87 VHEILKSS 94 (290)
Q Consensus 87 ~~~~~~~~ 94 (290)
|.+.+...
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99887755
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=4.8e-17 Score=122.80 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+....++|||+|| ++|+++|+++|++||+|..|.|+. ++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446789999996 699999999999999999999863 48999999999999999999999988888888877
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
+...
T Consensus 107 ~a~~ 110 (121)
T 2bz2_A 107 IARK 110 (121)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 6644
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.1e-16 Score=127.10 Aligned_cols=74 Identities=30% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
....+|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 35688999999999999999999999999999999999889999999999999999999999999999998865
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=1.6e-16 Score=127.13 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccc---cccce
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF---NFVHE 89 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~---~~~~~ 89 (290)
....+|||+|||+.+|+++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..+.+ +.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999885 69999999999999999999999999976653 67666
Q ss_pred eh
Q 022930 90 IL 91 (290)
Q Consensus 90 ~~ 91 (290)
.+
T Consensus 172 ~~ 173 (175)
T 3nmr_A 172 KF 173 (175)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=1.6e-16 Score=129.72 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKS 93 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~ 93 (290)
.++|||+|||+++|+++|.++|++||+|..|.|+.+. ++.++|||||+|.+.++|+.||..++ ..|+|+.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 4799999999999999999999999999999999885 69999999999999999999998665 58999988877553
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=1.2e-16 Score=133.67 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 11 DIRDTYSLLVLNITFRT---------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~---------t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
.....++|||+||+..+ ++++|.++|++||+|+.|.|+.+ +|||||+|.+.++|+.|+++|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35567899999999998 79999999999999999999865 8999999999999999999999988
Q ss_pred c------------cccccceehhhh
Q 022930 82 L------------NFNFVHEILKSS 94 (290)
Q Consensus 82 ~------------~~~~~~~~~~~~ 94 (290)
| .|..|.|.+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 8 667777665543
No 191
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-17 Score=115.77 Aligned_cols=72 Identities=33% Similarity=0.435 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~ 92 (290)
..++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.+..|.+.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 4689999999999999999999999999999999865 589999999999999754321 23335555555443
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=5.6e-16 Score=124.21 Aligned_cols=78 Identities=26% Similarity=0.418 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
.....++|||+|||+.+|+++|.++|++||+|..+ ..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999998766 4678999999999999999999999999999999888877
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 170 ~a~ 172 (175)
T 1fje_B 170 YTG 172 (175)
T ss_dssp ECS
T ss_pred ecC
Confidence 653
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=112.53 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCCCCCCcEEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh
Q 022930 9 PPDIRDTYSLLVLNITFRTT-----------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~~t-----------~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 77 (290)
+.....+.+|+|.||....+ +++|+++|++||+|..|.| .++ .++|||||+|.+.++|+.||..|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34556688999999954432 5799999999999999966 443 37999999999999999999999
Q ss_pred CCccccccccceehhh
Q 022930 78 DGLFLNFNFVHEILKS 93 (290)
Q Consensus 78 ~g~~~~~~~~~~~~~~ 93 (290)
||..|+++.|.|.+..
T Consensus 85 ng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 85 DGRWFGGRQITAQAWD 100 (112)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCcEEEEEEeC
Confidence 9999999988887653
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2.2e-15 Score=110.62 Aligned_cols=81 Identities=25% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEcccCCC--CCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 14 DTYSLLVLNI--TFRTT--------ADDLFPLFEKYGKVVDVFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 14 ~~~~l~V~nL--~~~~t--------~~~L~~~F~~~G~I~~v~i~~d~~t--g~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
++..|+|.|+ |..+. +++|+++|++||+|+.|.|+.+..+ +.++|||||+|.++++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578999998 33443 3689999999999999999988754 4679999999999999999999999999
Q ss_pred ccccccceehhhh
Q 022930 82 LNFNFVHEILKSS 94 (290)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (290)
++|+.|.+.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999876644
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2.2e-15 Score=130.19 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc-ccccceehh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN-FNFVHEILK 92 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~-~~~~~~~~~ 92 (290)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 56889999999999999999999999999999998664 589999999999999999999998888 888887665
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.6e-15 Score=125.11 Aligned_cols=71 Identities=11% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCe--EEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKV--VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I--~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
.+.+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.+..
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 45789999999999999999999999999 899998774 556799999999999999999999999888763
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=5.3e-16 Score=113.80 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=63.0
Q ss_pred EEcCCCCCCCHHHHHHHH------------hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 19 LVLNITFRTTADDLFPLF------------EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 19 ~V~nL~~~~t~~~L~~~F------------~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
.+.||++.+++++|.++| ++||+|..|.|+.+. ++.++|||||+|.++++|.+|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 366777888888877666 999999999999875 5789999999999999999999999999999998
Q ss_pred cceehh
Q 022930 87 VHEILK 92 (290)
Q Consensus 87 ~~~~~~ 92 (290)
|.|.+.
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 887653
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=120.76 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc-cccccee
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN-FNFVHEI 90 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~-~~~~~~~ 90 (290)
..+++|||+|||+.+|+++|.++|.+|| +|..|.|+.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999997643 799999999999999999999999998 8888877
Q ss_pred hhh
Q 022930 91 LKS 93 (290)
Q Consensus 91 ~~~ 93 (290)
+..
T Consensus 193 ~a~ 195 (198)
T 1qm9_A 193 FSK 195 (198)
T ss_dssp EEC
T ss_pred eec
Confidence 653
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=7e-15 Score=123.28 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc-ccccceeh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN-FNFVHEIL 91 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~-~~~~~~~~ 91 (290)
.+++|||+|||+.+|+++|+++|.+|| +|..|.|+.+. +|||||+|.+.++|.+||..|||..|+ ++.|.|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 99999996532 789999999999999999999999998 88888876
Q ss_pred hh
Q 022930 92 KS 93 (290)
Q Consensus 92 ~~ 93 (290)
..
T Consensus 225 a~ 226 (229)
T 2adc_A 225 SK 226 (229)
T ss_dssp CS
T ss_pred ec
Confidence 54
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=5.1e-15 Score=110.82 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHHhcCCCeEEEEEcccCC----CCCcceEEEEEEccHHHHHHHHHHhCCccccc
Q 022930 14 DTYSLLVLNITF--RT---TADDLFPLFEKYGKVVDVFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGLFLNF 84 (290)
Q Consensus 14 ~~~~l~V~nL~~--~~---t~~~L~~~F~~~G~I~~v~i~~d~~----tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~ 84 (290)
++.+|+|.||-. ++ .++||+++|++||+|..|.|+.+.. ++..+|||||+|.++++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468899999832 22 3589999999999999999998864 45678999999999999999999999999999
Q ss_pred cccceehhhh
Q 022930 85 NFVHEILKSS 94 (290)
Q Consensus 85 ~~~~~~~~~~ 94 (290)
+.|.+.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999876644
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=8.6e-15 Score=125.20 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh-CCcccc---ccccce
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGLFLN---FNFVHE 89 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~~~---~~~~~~ 89 (290)
...+|||+|||+.+|+++|.++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|..||..| ++.++. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4578999999999999999999999999999999999 58999999999999999999999999 555554 677776
Q ss_pred ehhh
Q 022930 90 ILKS 93 (290)
Q Consensus 90 ~~~~ 93 (290)
.+..
T Consensus 174 ~~~~ 177 (261)
T 3sde_A 174 EPME 177 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 5443
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.2e-14 Score=127.98 Aligned_cols=66 Identities=29% Similarity=0.502 Sum_probs=59.4
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 12 IRDTYSLLVLN--ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 12 ~~~~~~l~V~n--L~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
...+.+|||+| |++.+|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45578999999 588999999999999999999988864 3799999999999999999999998883
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-13 Score=98.80 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=58.1
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 15 TYSLLVLNIT-------FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 15 ~~~l~V~nL~-------~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
...|.|.-.. ..+|+++|+++|++||+|..|.|+ +.++|||||+|.+.++|+.||..+++ +.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567776544 468999999999999999999997 35699999999999999999998665 456666
Q ss_pred ceehh
Q 022930 88 HEILK 92 (290)
Q Consensus 88 ~~~~~ 92 (290)
.|.+.
T Consensus 83 ~V~~a 87 (100)
T 2d9o_A 83 KISWL 87 (100)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 66554
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=3.3e-13 Score=100.25 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 14 DTYSLLVLNITFRTT----------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t----------~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
.+..|.|.|+=.... +++|+++|++||+|+.|.|+.+. .+|||||+|.+.++|.+|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467799998733221 34788999999999999997652 4899999999999999999999999999
Q ss_pred ccccceehhhh
Q 022930 84 FNFVHEILKSS 94 (290)
Q Consensus 84 ~~~~~~~~~~~ 94 (290)
|+.|.+.+...
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999877654
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=97.42 Aligned_cols=75 Identities=20% Similarity=0.084 Sum_probs=64.2
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc-HHHHHHHHHHhC--Cccccc
Q 022930 9 PPDIRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVDRLD--GLFLNF 84 (290)
Q Consensus 9 ~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~-~~~a~~Al~~l~--g~~~~~ 84 (290)
......++.|||+||++. +++++|+++|++||+|..|.|+.+. -.|||.|.+ +.+|..|+..|| +..|.+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345667899999999999 9999999999999999999999874 369999999 899999999995 666766
Q ss_pred cccce
Q 022930 85 NFVHE 89 (290)
Q Consensus 85 ~~~~~ 89 (290)
..+.+
T Consensus 86 ~~~~~ 90 (121)
T 1owx_A 86 KEVTW 90 (121)
T ss_dssp SSEEE
T ss_pred cEEEE
Confidence 55443
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.2e-12 Score=88.27 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=59.6
Q ss_pred cEEEEcCCC----CCCCH----HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccc
Q 022930 16 YSLLVLNIT----FRTTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFV 87 (290)
Q Consensus 16 ~~l~V~nL~----~~~t~----~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~ 87 (290)
.||+|.-++ .++-. .+|.+.|.+||+|..++|+.+ .|||+|.+.++|.+||. |||..|+|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 568887766 23444 578899999999999999977 38999999999999999 99999999999
Q ss_pred ceehhhh
Q 022930 88 HEILKSS 94 (290)
Q Consensus 88 ~~~~~~~ 94 (290)
+|.++.+
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9987754
No 207
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.19 E-value=2.9e-11 Score=110.40 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=64.4
Q ss_pred HHHHHhcCCCeEEEEEcc----cC-CCCCcceEE--EEEEccHHHHHHHHHHhCCccccccccceehhhhHH------hh
Q 022930 32 LFPLFEKYGKVVDVFIPR----DR-RTGDSRGFA--FVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSLF------LR 98 (290)
Q Consensus 32 L~~~F~~~G~I~~v~i~~----d~-~tg~~~g~a--fV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~~------~~ 98 (290)
|..||.++|+|..|..+. ++ .+....|+| |++|....+|..|+..++...+..+........... ..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999998873322 21 122233444 889988887777776655544433222111111100 00
Q ss_pred h---ccccccCcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 99 K---NLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 99 ~---~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
+ ........+..+|||+|||..++..+|..+|.+||.+
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I 129 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPI 129 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCe
Confidence 0 1111223445789999999999999999999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.5e-11 Score=83.88 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=59.0
Q ss_pred cEEEEcCCCCC-----CCH----HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 16 YSLLVLNITFR-----TTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 16 ~~l~V~nL~~~-----~t~----~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
.||+|.-++.. +-. .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||. |||+.|+++.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 57999888743 333 4688999999999999999883 9999999999999999 9999999999
Q ss_pred cceehhh
Q 022930 87 VHEILKS 93 (290)
Q Consensus 87 ~~~~~~~ 93 (290)
|.|.++.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9987653
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.07 E-value=2.9e-10 Score=94.54 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=58.8
Q ss_pred CHHHHHHHHhcCCCeEEEEEcccC----CCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhh
Q 022930 28 TADDLFPLFEKYGKVVDVFIPRDR----RTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSS 94 (290)
Q Consensus 28 t~~~L~~~F~~~G~I~~v~i~~d~----~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~ 94 (290)
.+++|.+.|.+||+|..|.|+.+. .++.++|++||+|.+.++|.+|+..|||..++|+.|.+.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 457899999999999999998543 4558999999999999999999999999999999998876543
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.94 E-value=9.4e-10 Score=86.39 Aligned_cols=92 Identities=11% Similarity=-0.181 Sum_probs=62.1
Q ss_pred EEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccceehhhhH-----HhhhccccccCcceeEEEEeccC
Q 022930 44 DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSL-----FLRKNLYLCIGFLFFFLIFFILG 118 (290)
Q Consensus 44 ~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~~l~ 118 (290)
.+.|+.+. ..++|||||+|.++++|++||..+++....+..+.+...... ...............+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666664 368999999999999999999988864332222221111110 00011112234456889999999
Q ss_pred cccchhHHHHHhhccCCch
Q 022930 119 RVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 119 ~~~~~~~l~~~f~~~g~~~ 137 (290)
..+++++|...|++||...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~ 98 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVG 98 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEE
T ss_pred CCCCHHHHHHHHHhcCCeE
Confidence 9999999999999999764
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.81 E-value=3e-09 Score=82.81 Aligned_cols=84 Identities=15% Similarity=-0.013 Sum_probs=66.6
Q ss_pred CCCcceEEEEEEccHHHHHHHHHHh-CCccccccccceehhhhHHhh--------hccccccCcceeEEEEeccCcccch
Q 022930 53 TGDSRGFAFVRYKYADEAQKAVDRL-DGLFLNFNFVHEILKSSLFLR--------KNLYLCIGFLFFFLIFFILGRVVDG 123 (290)
Q Consensus 53 tg~~~g~afV~F~~~~~a~~Al~~l-~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~v~~l~~~~~~ 123 (290)
....+|+++|+|.++++|++||+.| ||..|+| .+.+.+....... ............+|||+|||..+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 7777665542111 1122234556789999999999999
Q ss_pred hHHHHHhhccCCch
Q 022930 124 REITVQFAKYGPNA 137 (290)
Q Consensus 124 ~~l~~~f~~~g~~~ 137 (290)
++|...|.+||...
T Consensus 88 ~~l~~~F~~~G~i~ 101 (150)
T 2i2y_A 88 TELERAFGYYGPLR 101 (150)
T ss_dssp HHHHHHHHHHSCEE
T ss_pred HHHHHHHHhhCCEE
Confidence 99999999999754
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.8e-08 Score=72.03 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKY-----GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~-----G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
...+|-|-|||..|+...|..|++.+ |.|+.|.|..| -|=|+|+|.+...|.+|.-+|+|..|+|+.|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 99999999988 45699999999999999999999999999988
Q ss_pred ee
Q 022930 89 EI 90 (290)
Q Consensus 89 ~~ 90 (290)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.19 E-value=1.6e-06 Score=61.80 Aligned_cols=73 Identities=12% Similarity=0.004 Sum_probs=61.4
Q ss_pred cEEEEcCCCCCC-CH----HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 16 YSLLVLNITFRT-TA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 16 ~~l~V~nL~~~~-t~----~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
++|+|+||+..| +. +.|+++|..|+++....+... -.=..|.|.++++|.+|-..|++..++|..+.++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 689999998876 33 466899999999988877654 2246899999999999999999999999999988
Q ss_pred hhhh
Q 022930 91 LKSS 94 (290)
Q Consensus 91 ~~~~ 94 (290)
|.+.
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8873
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=4.6e-06 Score=61.11 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccc
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNF 86 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~ 86 (290)
+....+.|.|-++|+.. ...|..+|++||+|.+...... ..+-.|.|.+..+|++||. .||+.|++..
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 34456789999999985 5778999999999998877322 4589999999999999999 6999887543
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.12 E-value=9.7e-06 Score=56.79 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCC--cceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~--~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
++|.|.+||+.+||+++.+.+..+.++.....+....+.. .-.-|||.|.+.+++....+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999999888777765544432 3357899999999999999999996553
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.11 E-value=1.1e-05 Score=56.58 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
-...++| ++|+++...||.++|..||.| .|.++-|. -|||.|.+++.|..||..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455666 999999999999999999965 57777663 79999999999999999764
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.03 E-value=7.8e-06 Score=57.46 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
..++| ++|+++...||.++|..||. ..|.++-|. -|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44666 99999999999999999994 467777763 79999999999999999775
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=9.2e-05 Score=52.51 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc-----CCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCccccccccc
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEK-----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVH 88 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~-----~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~ 88 (290)
...+|.|.|||+.+.++.|.-+|+. -|+|..|.... +-|+|+|.+.+.|+..|.. ....|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3578999999999999999999987 25898888753 3699999999999999884 24445554444
Q ss_pred e
Q 022930 89 E 89 (290)
Q Consensus 89 ~ 89 (290)
|
T Consensus 78 V 78 (104)
T 2dhx_A 78 L 78 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 219
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.63 E-value=2.3e-05 Score=59.49 Aligned_cols=71 Identities=10% Similarity=-0.217 Sum_probs=29.8
Q ss_pred eEEEEEEccHHHHHHHHHHhCCccccccccceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 58 GFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 58 g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
-++|++|.+...|..||..|+|....+..... ............+|||+|||..+++++|...|++||...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~---------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMS---------YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ------------------------------CC---------SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCC---------cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 36788999999999999999885554432111 111122344567899999999999999999999999764
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.61 E-value=5.5e-05 Score=53.27 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=50.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCC--cceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~--~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
.-+|.|..||+.+||+++.+.++.+-++.....+....+.+ .-.-|||.|.+.+++....+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999887776665554444433332222 2245899999999999999999995553
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.45 E-value=9.1e-05 Score=54.98 Aligned_cols=75 Identities=15% Similarity=0.286 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCC---------CC-----CcceEEEEEEccHHHHHHHHHHhCC
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR---------TG-----DSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~---------tg-----~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
....|.|-++|+.++ ..|.++|++||.|.+-.-..... .. ...+...|.|.++.+|..||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 346688999977765 56888999999997622111100 00 124577999999999999999 799
Q ss_pred cccccccccee
Q 022930 80 LFLNFNFVHEI 90 (290)
Q Consensus 80 ~~~~~~~~~~~ 90 (290)
..|+|..|-|.
T Consensus 84 ~ii~G~mIGV~ 94 (132)
T 3p3d_A 84 AVFNGVLLGVI 94 (132)
T ss_dssp CEETTEECEEE
T ss_pred eEeCcEEEEEE
Confidence 99998766553
No 222
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.30 E-value=0.00015 Score=56.92 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=28.5
Q ss_pred EEEccHHHHHHHHHHhCCcccc--ccccceehhhh----HHhh--------hccccccCcceeEEEEeccCcccchhHHH
Q 022930 62 VRYKYADEAQKAVDRLDGLFLN--FNFVHEILKSS----LFLR--------KNLYLCIGFLFFFLIFFILGRVVDGREIT 127 (290)
Q Consensus 62 V~F~~~~~a~~Al~~l~g~~~~--~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 127 (290)
++|++.++|+.|+..|++.... +.-+.+..... .+.. ............+|||+|||..++..+|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 8899999999999999986654 33333222111 0000 11112234556789999999999999999
Q ss_pred HHhhccCCch
Q 022930 128 VQFAKYGPNA 137 (290)
Q Consensus 128 ~~f~~~g~~~ 137 (290)
..|.+||.+.
T Consensus 91 ~~F~~~G~i~ 100 (165)
T 1rk8_A 91 EKFCDYGEIK 100 (165)
T ss_dssp HHHGGGSCEE
T ss_pred HHhhcCCCEE
Confidence 9999999753
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.27 E-value=0.00013 Score=66.30 Aligned_cols=55 Identities=9% Similarity=0.225 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
.++|||. +|..+++.+|.++|.+||+|..+.+..+. .-||.|||.+.++|..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3689997 79999999999999999999999988663 3699999999999997765
No 224
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.21 E-value=0.0028 Score=45.00 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=27.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
+.++|||+|||..+++++|...|++||+..
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~ 47 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVE 47 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 456899999999999999999999999864
No 225
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.09 E-value=0.0019 Score=49.05 Aligned_cols=72 Identities=7% Similarity=-0.087 Sum_probs=26.0
Q ss_pred eEEEEEEccHHHHHHHHHHhCCccccccccceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 58 GFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 58 g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
|+||.+|..++.+..|+..+..+. ++...-.... ............+|||+|||..+++++|...|.+||..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~~~g------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGSG------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCCCS
T ss_pred CcccccccCccccchhcccchhcc-CCCCCCCCCC------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 689999998888888777655532 2211110000 00011123345689999999999999999999999943
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.0033 Score=45.21 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|++||...
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~ 44 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT 44 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999854
No 227
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.0045 Score=42.59 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=27.3
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 33 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM 33 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee
Confidence 467899999999999999999999999864
No 228
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=95.99 E-value=0.0043 Score=43.03 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=27.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|++||...
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~ 39 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVV 39 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEE
Confidence 34567899999999999999999999999864
No 229
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.80 E-value=0.0061 Score=46.01 Aligned_cols=69 Identities=6% Similarity=-0.152 Sum_probs=28.5
Q ss_pred eEEEEEEccHHHHHHHHHHhCCccccccccceehhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhccCC
Q 022930 58 GFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEILKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 58 g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
|++|.+|..++.+..+...+-.+.=++. . ...............+|||+|||..+++++|...|.++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~-~--------g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~ 70 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQ-M--------GRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTI 70 (136)
T ss_dssp ------------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCC
T ss_pred ccccccccchHHHHhhccCCCcccCCCC-C--------CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCC
Confidence 5677777777766655554333211100 0 0001111223445678999999999999999999999998
No 230
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.79 E-value=0.0068 Score=42.66 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=27.5
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|++||..
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i 36 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASL 36 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCC
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCc
Confidence 3456789999999999999999999999964
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.79 E-value=0.0066 Score=44.69 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|++||...
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~ 59 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT 59 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 44567899999999999999999999999864
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.78 E-value=0.0058 Score=44.49 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=26.5
Q ss_pred eeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 109 FFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+|||+|||..+++++|...|.+||...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~ 33 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL 33 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE
Confidence 46899999999999999999999999854
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.77 E-value=0.0047 Score=44.16 Aligned_cols=32 Identities=6% Similarity=-0.139 Sum_probs=28.5
Q ss_pred CcceeEEEEeccCc-ccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGR-VVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||. .+++++|...|.+||...
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~ 44 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS 44 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE
Confidence 44678899999999 999999999999999854
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.64 E-value=0.0069 Score=43.40 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=27.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++.+|...|.+||...
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~ 43 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC 43 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999854
No 235
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.59 E-value=0.034 Score=51.38 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
....++|+ +|..|...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..|+.+++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 34567776 99999999999999999964 6766655 3799999999999999998864
No 236
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.59 E-value=0.0088 Score=42.54 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+...|||+|||..+++++|...|++||...
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~ 49 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPIS 49 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEE
Confidence 34567899999999999999999999999864
No 237
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.58 E-value=0.0073 Score=43.03 Aligned_cols=32 Identities=19% Similarity=0.029 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~ 43 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVT 43 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999864
No 238
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.57 E-value=0.0081 Score=43.13 Aligned_cols=30 Identities=7% Similarity=-0.164 Sum_probs=27.1
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
....+|||+|||..+++++|...|.+||..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 42 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDV 42 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 346789999999999999999999999875
No 239
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.51 E-value=0.011 Score=40.93 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|.+||..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v 37 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPV 37 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4556889999999999999999999999875
No 240
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.50 E-value=0.011 Score=40.84 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=28.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
..+..+|||+|||..+++++|...|.+||..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 35 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKV 35 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCE
Confidence 4467899999999999999999999999875
No 241
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.0086 Score=42.91 Aligned_cols=32 Identities=16% Similarity=-0.084 Sum_probs=28.4
Q ss_pred ccCcceeEEEEeccCcccchhHHHHHhhccCC
Q 022930 104 CIGFLFFFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
+...+..+|||+|||..+++++|...|.+||.
T Consensus 3 ~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~ 34 (109)
T 2dis_A 3 SGSSGNCRLFIGGIPKMKKREEILEEIAKVTE 34 (109)
T ss_dssp SCCCCSEEEEEECCCTTSCHHHHHHHHHHHST
T ss_pred ccccCCCEEEEeCCCCcCCHHHHHHHHHHhcC
Confidence 34556789999999999999999999999987
No 242
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.0079 Score=42.98 Aligned_cols=32 Identities=6% Similarity=-0.189 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..++.++|...|++||+..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~ 39 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVL 39 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEE
Confidence 34567899999999999999999999999864
No 243
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.44 E-value=0.012 Score=41.01 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.1
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
....+|||+|||..+++++|...|.+||....
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~ 37 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS 37 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE
Confidence 34578999999999999999999999998653
No 244
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.37 E-value=0.0091 Score=41.85 Aligned_cols=31 Identities=16% Similarity=-0.066 Sum_probs=27.7
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|++||...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 33 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK 33 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 4567899999999999999999999999763
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.36 E-value=0.011 Score=44.15 Aligned_cols=33 Identities=15% Similarity=-0.072 Sum_probs=29.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.....+|||+|||..+++++|...|.+||....
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~ 52 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSS 52 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 455678999999999999999999999998754
No 246
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.0096 Score=43.21 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=28.1
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999999875
No 247
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.34 E-value=0.012 Score=40.24 Aligned_cols=30 Identities=23% Similarity=0.089 Sum_probs=27.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 32 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK 32 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999764
No 248
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.34 E-value=0.0094 Score=41.35 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=27.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
.....+|||+|||..+++++|...|.+||.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 34 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 345678999999999999999999999998
No 249
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.33 E-value=0.01 Score=40.54 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 39 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV 39 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE
Confidence 34567899999999999999999999999864
No 250
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.012 Score=41.34 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 38 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVT 38 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44568899999999999999999999998764
No 251
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.30 E-value=0.013 Score=41.06 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 36 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS 36 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe
Confidence 44678999999999999999999999999753
No 252
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.28 E-value=0.013 Score=39.94 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|++||...
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~ 34 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRIS 34 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEe
Confidence 3567899999999999999999999999854
No 253
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.28 E-value=0.011 Score=41.36 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..+++++|...|++||...
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~ 45 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIR 45 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 345567899999999999999999999999754
No 254
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=95.27 E-value=0.012 Score=42.51 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=28.4
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.+..+|||+|||..+++++|...|++||....
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~ 35 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEE 35 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE
Confidence 45678999999999999999999999998653
No 255
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.26 E-value=0.014 Score=40.69 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=28.3
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.+..+|||+|||..+++++|...|.+||....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 34 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ 34 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 35678999999999999999999999998643
No 256
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.23 E-value=0.0094 Score=43.39 Aligned_cols=30 Identities=7% Similarity=-0.123 Sum_probs=25.9
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~ 44 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC 44 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 357899999999999999999999998753
No 257
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.23 E-value=0.014 Score=39.63 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=27.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|.+||...
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~ 35 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT 35 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE
Confidence 4567899999999999999999999999754
No 258
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.21 E-value=0.013 Score=41.62 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~ 43 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 43 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 34568899999999999999999999999753
No 259
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.21 E-value=0.0098 Score=40.47 Aligned_cols=31 Identities=13% Similarity=-0.097 Sum_probs=27.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|.+||...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~ 33 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV 33 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 4567899999999999999999999998754
No 260
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.21 E-value=0.013 Score=41.76 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 41 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY 41 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 44568899999999999999999999998754
No 261
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.20 E-value=0.014 Score=40.82 Aligned_cols=32 Identities=13% Similarity=-0.035 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE
Confidence 34467899999999999999999999999863
No 262
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.19 E-value=0.013 Score=41.94 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~ 50 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR 50 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44567899999999999999999999999864
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.18 E-value=0.012 Score=38.90 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=25.0
Q ss_pred EEEEeccCcccchhHHHHHhhccCCch
Q 022930 111 FLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
+|||+|||..+++++|...|.++|+..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~ 27 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD 27 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE
Confidence 589999999999999999999999864
No 264
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.012 Score=41.32 Aligned_cols=32 Identities=22% Similarity=0.083 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 37 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETV 37 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 34567899999999999999999999999754
No 265
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.16 E-value=0.014 Score=42.10 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=27.2
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..++.++|...|.+||...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 38 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG 38 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 467899999999999999999999999863
No 266
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.016 Score=40.58 Aligned_cols=32 Identities=19% Similarity=-0.039 Sum_probs=27.2
Q ss_pred CcceeEEEEeccCc-ccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGR-VVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||. .+++++|...|.+||...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~ 39 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM 39 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE
Confidence 34567899999998 999999999999999753
No 267
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.14 E-value=0.011 Score=42.96 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcc-cchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRV-VDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||.. +++.+|...|.+||...
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~ 54 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK 54 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE
Confidence 445778999999998 99999999999999864
No 268
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.014 Score=41.24 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|++||...
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~ 41 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVG 41 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34568899999999999999999999998754
No 269
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.13 E-value=0.015 Score=39.21 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.8
Q ss_pred eEEEEeccCcccchhHHHHHhhccCCch
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+|||+|||..+++++|...|.+||...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~ 29 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL 29 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 5799999999999999999999999754
No 270
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.12 E-value=0.019 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=28.9
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++++|...|++||...
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~ 51 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 51 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeE
Confidence 345567899999999999999999999999764
No 271
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.10 E-value=0.015 Score=40.41 Aligned_cols=31 Identities=13% Similarity=-0.133 Sum_probs=27.7
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|.+||...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 33 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKID 33 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEe
Confidence 3567899999999999999999999998754
No 272
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.017 Score=40.88 Aligned_cols=32 Identities=9% Similarity=-0.053 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~ 43 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 43 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44567899999999999999999999999764
No 273
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.011 Score=40.85 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=27.5
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|.+||..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v 36 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRV 36 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCE
Confidence 3456789999999999999999999999874
No 274
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.05 E-value=0.014 Score=40.75 Aligned_cols=29 Identities=10% Similarity=-0.045 Sum_probs=26.4
Q ss_pred eeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 109 FFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+|||+|||..+++++|...|++||...
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 30 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI 30 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE
Confidence 46899999999999999999999999754
No 275
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=95.04 E-value=0.012 Score=40.91 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=24.4
Q ss_pred eEEEEeccCcccchhHHHHHhhccCC
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
++|||+|||..+++++|...|++||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~ 27 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV 27 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC
Confidence 57999999999999999999999983
No 276
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.04 E-value=0.014 Score=41.16 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~ 40 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT 40 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEE
Confidence 44567899999999999999999999998764
No 277
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.03 E-value=0.013 Score=38.87 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=25.1
Q ss_pred EEEEeccCcccchhHHHHHhhccCCch
Q 022930 111 FLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
+|||+|||..+++++|...|.++|+..
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~ 28 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVK 28 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 699999999999999999999999764
No 278
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.01 E-value=0.016 Score=42.07 Aligned_cols=32 Identities=3% Similarity=-0.134 Sum_probs=27.8
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccC-Cch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYG-PNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~~ 137 (290)
.....+|||+|||..+++++|...|.++| ...
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~ 57 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETT 57 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeE
Confidence 44567999999999999999999999999 543
No 279
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.00 E-value=0.017 Score=41.80 Aligned_cols=31 Identities=0% Similarity=-0.194 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
..+..+|||+|||..+++++|...|..||..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVD 42 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCc
Confidence 3456789999999999999999999999876
No 280
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.00 E-value=0.015 Score=40.10 Aligned_cols=32 Identities=9% Similarity=-0.107 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..++.++|...|.+||...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~ 36 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVL 36 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999998754
No 281
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.98 E-value=0.019 Score=41.49 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..+++++|...|.+||...
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 43 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 345678899999999999999999999998753
No 282
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.96 E-value=0.014 Score=41.29 Aligned_cols=32 Identities=25% Similarity=0.044 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK 43 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe
Confidence 44568899999999999999999999999754
No 283
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=94.95 E-value=0.017 Score=40.16 Aligned_cols=30 Identities=17% Similarity=-0.117 Sum_probs=26.8
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP 43 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999764
No 284
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.94 E-value=0.015 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=28.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELK 43 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeE
Confidence 44567899999999999999999999999754
No 285
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.94 E-value=0.014 Score=41.34 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|++||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~ 43 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSIS 43 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 44568899999999999999999999999754
No 286
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.93 E-value=0.015 Score=41.73 Aligned_cols=32 Identities=6% Similarity=-0.126 Sum_probs=28.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 43 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK 43 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE
Confidence 34567899999999999999999999999753
No 287
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.92 E-value=0.018 Score=39.92 Aligned_cols=32 Identities=16% Similarity=-0.060 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~ 44 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLT 44 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999764
No 288
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.92 E-value=0.014 Score=40.99 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=27.5
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG 43 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE
Confidence 4456899999999999999999999999753
No 289
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.92 E-value=0.016 Score=41.00 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL 43 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE
Confidence 34567899999999999999999999998753
No 290
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.91 E-value=0.02 Score=40.23 Aligned_cols=34 Identities=15% Similarity=-0.057 Sum_probs=29.7
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
......+|||+|||..+++++|...|.+||....
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEee
Confidence 3456688999999999999999999999998754
No 291
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.91 E-value=0.016 Score=41.15 Aligned_cols=32 Identities=16% Similarity=-0.081 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVV 43 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44567899999999999999999999998754
No 292
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.91 E-value=0.017 Score=41.56 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=28.4
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++++|...|.+||...
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~ 59 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMK 59 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE
Confidence 345568899999999999999999999999753
No 293
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.02 Score=41.28 Aligned_cols=32 Identities=13% Similarity=-0.076 Sum_probs=28.7
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVK 43 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEe
Confidence 44567899999999999999999999999875
No 294
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.87 E-value=0.016 Score=41.89 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=28.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 53 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV 53 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 34557899999999999999999999999864
No 295
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.87 E-value=0.016 Score=40.89 Aligned_cols=32 Identities=19% Similarity=0.019 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~ 40 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS 40 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE
Confidence 44567899999999999999999999998764
No 296
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.87 E-value=0.018 Score=41.76 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 45 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE 45 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee
Confidence 44567899999999999999999999998753
No 297
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=94.87 E-value=0.021 Score=41.99 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++++|...|.+||...
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 50 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 50 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 445567899999999999999999999999754
No 298
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.87 E-value=0.017 Score=39.23 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=27.5
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..++.++|...|.+||...
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~ 40 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR 40 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999753
No 299
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.86 E-value=0.021 Score=40.88 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++.+|...|.+||...
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 54 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK 54 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 445668899999999999999999999999764
No 300
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.85 E-value=0.02 Score=41.62 Aligned_cols=31 Identities=23% Similarity=0.103 Sum_probs=27.7
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|++||...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 35 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS 35 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999998753
No 301
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.019 Score=40.42 Aligned_cols=31 Identities=6% Similarity=-0.058 Sum_probs=27.7
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~ 55 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFIL 55 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCS
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEE
Confidence 3467899999999999999999999999864
No 302
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.84 E-value=0.015 Score=42.13 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=27.5
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 55 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLT 55 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 3457899999999999999999999999764
No 303
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.83 E-value=0.013 Score=41.51 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT 43 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999754
No 304
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.018 Score=40.48 Aligned_cols=33 Identities=12% Similarity=-0.085 Sum_probs=28.7
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~ 45 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVK 45 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 345567899999999999999999999999753
No 305
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=94.79 E-value=0.019 Score=43.37 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
...+..+|||+|||..++..+|...|.+||....
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 3556789999999999999999999999998654
No 306
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.79 E-value=0.024 Score=40.70 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=29.3
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
......+|||+|||..+++++|...|.+||....
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 58 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 58 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE
Confidence 3455678999999999999999999999998643
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.014 Score=40.68 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=28.6
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.....+|||+|||..+++++|...|.+||....
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~ 44 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVES 44 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE
Confidence 344678999999999999999999999997654
No 308
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.79 E-value=0.023 Score=39.72 Aligned_cols=31 Identities=16% Similarity=-0.144 Sum_probs=27.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~ 43 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP 43 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 3457899999999999999999999999865
No 309
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.79 E-value=0.019 Score=40.82 Aligned_cols=33 Identities=21% Similarity=-0.020 Sum_probs=28.9
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..+++++|...|.+||...
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 57 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLK 57 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 345568899999999999999999999999863
No 310
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.78 E-value=0.014 Score=41.13 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=27.7
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
..+..+|||+|||..+++++|...|.+||..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI 42 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE
Confidence 4457889999999999999999999999865
No 311
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.77 E-value=0.013 Score=41.61 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=26.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.+..+|||+|||..+++++|...|.+||..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i 38 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKL 38 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 345789999999999999999999999874
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.75 E-value=0.013 Score=38.76 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=24.9
Q ss_pred EEEEeccCcccchhHHHHHhhccCCch
Q 022930 111 FLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
+|||+|||..+++++|...|.++|+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~ 27 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE 27 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 589999999999999999999999864
No 313
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.018 Score=40.00 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=28.7
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..++.++|...|.+||...
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 43 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIA 43 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCee
Confidence 345567899999999999999999999999764
No 314
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.022 Score=40.39 Aligned_cols=28 Identities=14% Similarity=-0.069 Sum_probs=25.9
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccC
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
.+..+|||+|||..+++++|...|.+||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN 40 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC
Confidence 4568999999999999999999999998
No 315
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=94.74 E-value=0.023 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=27.6
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 37 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVK 37 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 3567899999999999999999999999764
No 316
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.017 Score=40.40 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=26.9
Q ss_pred ceeEEEEeccCcccchhHHH----HHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREIT----VQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~----~~f~~~g~~~ 137 (290)
+..+|||+|||..+++++|. ..|.+||...
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~ 41 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK 41 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE
Confidence 45789999999999999999 9999999754
No 317
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.72 E-value=0.018 Score=42.36 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=28.4
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
....+|||+|||..+++++|...|..||....
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccc
Confidence 45578999999999999999999999998654
No 318
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.70 E-value=0.018 Score=40.58 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=25.4
Q ss_pred eEEEEeccCcccchhHHHHHhhccCCch
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
++|||+|||..+++++|...|++||+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 28 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR 28 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 3799999999999999999999998753
No 319
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=94.66 E-value=0.017 Score=41.53 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.3
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++++|...|.+||...
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~ 53 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK 53 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE
Confidence 445667899999999999999999999999864
No 320
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.66 E-value=0.019 Score=40.70 Aligned_cols=32 Identities=22% Similarity=0.030 Sum_probs=28.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhc-cCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAK-YGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+ ||...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~ 38 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 38 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE
Confidence 345678999999999999999999999 99753
No 321
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=94.66 E-value=0.021 Score=40.09 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=28.2
Q ss_pred cCcceeEEEEeccCc-ccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGR-VVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||. .+++++|...|++||...
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~ 51 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM 51 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE
Confidence 344567899999998 999999999999999854
No 322
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.64 E-value=0.018 Score=39.33 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=26.8
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 34 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVN 34 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999854
No 323
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=94.62 E-value=0.017 Score=39.81 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=22.7
Q ss_pred eEEEEeccCcccchhHHHHHhhccC
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
.+|||+|||..+++++|...|.+||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G 26 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLG 26 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 4799999999999999999999999
No 324
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.61 E-value=0.026 Score=40.45 Aligned_cols=33 Identities=12% Similarity=-0.106 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++.+|...|.+||...
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 54 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIE 54 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 345568899999999999999999999999753
No 325
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.54 E-value=0.0082 Score=44.17 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=27.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|.+||...
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 64 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSIN 64 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 457899999999999999999999999754
No 326
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.52 E-value=0.025 Score=40.19 Aligned_cols=32 Identities=16% Similarity=-0.148 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.++|...
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~ 43 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP 43 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 34567899999999999999999999999764
No 327
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.51 E-value=0.021 Score=40.85 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=28.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..++.++|...|.+||...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~ 53 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM 53 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44567899999999999999999999999753
No 328
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.51 E-value=0.019 Score=40.56 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=27.0
Q ss_pred ceeEEEEeccCc------ccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGR------VVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~------~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||. .++.++|...|++||...
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~ 40 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV 40 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe
Confidence 457899999999 999999999999999864
No 329
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.51 E-value=0.024 Score=39.72 Aligned_cols=29 Identities=14% Similarity=-0.091 Sum_probs=25.8
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
.....+|||+|||..+++++|...|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 40 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIK 40 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34567899999999999999999999993
No 330
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.50 E-value=0.024 Score=40.92 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=27.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..++..+|...|.+||...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~ 36 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR 36 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 3467899999999999999999999999864
No 331
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.46 E-value=0.022 Score=41.32 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=28.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 68 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI 68 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999754
No 332
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.46 E-value=0.015 Score=41.32 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~ 44 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV 44 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 45567899999999999999999999999754
No 333
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.45 E-value=0.024 Score=40.69 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=26.7
Q ss_pred ceeEEEEeccCcc-cchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRV-VDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~-~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||.. +++++|...|.+||...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~ 56 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVA 56 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeE
Confidence 3478999999999 99999999999999753
No 334
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.022 Score=41.05 Aligned_cols=32 Identities=19% Similarity=0.062 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~ 43 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 43 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 34567899999999999999999999998753
No 335
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.40 E-value=0.026 Score=37.98 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=25.3
Q ss_pred eEEEEeccCccc------chhHHHHHhhccCCchh
Q 022930 110 FFLIFFILGRVV------DGREITVQFAKYGPNAE 138 (290)
Q Consensus 110 ~~l~v~~l~~~~------~~~~l~~~f~~~g~~~~ 138 (290)
.+|||+|||..+ +.++|...|++||....
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~ 36 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN 36 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE
Confidence 579999999999 66999999999998643
No 336
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.37 E-value=0.027 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred cceeEEEEeccCcccchhHHH----HHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREIT----VQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~~~ 137 (290)
.+..+|||+|||..+++++|. ..|.+||...
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~ 40 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL 40 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 456789999999999999999 9999999754
No 337
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.35 E-value=0.024 Score=40.24 Aligned_cols=31 Identities=13% Similarity=-0.043 Sum_probs=27.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|.+++..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~ 42 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM 42 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce
Confidence 3456789999999999999999999999954
No 338
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.33 E-value=0.019 Score=40.44 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=28.0
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
....+|||+|||..+++++|...|.+||....
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 35679999999999999999999999986544
No 339
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.30 E-value=0.02 Score=39.62 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
..+..+|||+|||..+++++|...|.+||...
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~ 44 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV 44 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE
Confidence 34457899999999999999999999999864
No 340
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.28 E-value=0.021 Score=40.34 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=26.9
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..+++++|...|++||...
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~ 36 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVV 36 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCee
Confidence 356899999999999999999999999754
No 341
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.25 E-value=0.029 Score=40.50 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=27.4
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
....+|||+|||..+++++|...|.+||...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 53 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVR 53 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEe
Confidence 3456899999999999999999999999764
No 342
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.25 E-value=0.027 Score=41.63 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=27.1
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
....+|||+|||..+++++|...|++|+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v 50 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPI 50 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCc
Confidence 345789999999999999999999999975
No 343
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.24 E-value=0.033 Score=39.31 Aligned_cols=29 Identities=10% Similarity=-0.152 Sum_probs=26.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
..+..+|||+|||..+++++|...|.+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 40 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS 40 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 44568899999999999999999999995
No 344
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.21 E-value=0.029 Score=40.90 Aligned_cols=31 Identities=6% Similarity=-0.100 Sum_probs=27.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|..||..
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~ 44 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIH 44 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 3456789999999999999999999999873
No 345
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.19 E-value=0.027 Score=38.94 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
+|....|+|+||+..++++.|...|.+||+...
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~ 36 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS 36 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEE
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEE
Confidence 455678999999999999999999999999654
No 346
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.07 E-value=0.032 Score=39.82 Aligned_cols=30 Identities=10% Similarity=-0.117 Sum_probs=27.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
.....+|||+|||..+++++|...|..+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~ 37 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRI 37 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCB
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 445678999999999999999999999887
No 347
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.02 E-value=0.03 Score=40.35 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=28.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|.+||...
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 53 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVI 53 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999998754
No 348
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.02 E-value=0.018 Score=41.49 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=28.3
Q ss_pred CcceeEEEEeccCcccchhHHH---HHhhccCCchh
Q 022930 106 GFLFFFLIFFILGRVVDGREIT---VQFAKYGPNAE 138 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~~~~ 138 (290)
.....+|||+|||..+++++|. ..|.+||....
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~ 47 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK 47 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE
Confidence 3446789999999999999999 99999998653
No 349
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=93.98 E-value=0.034 Score=42.58 Aligned_cols=30 Identities=20% Similarity=-0.034 Sum_probs=27.3
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.+..+|||+|||..+++++|...|++||.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 66 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDI 66 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 456889999999999999999999999875
No 350
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.92 E-value=0.023 Score=39.04 Aligned_cols=28 Identities=11% Similarity=0.053 Sum_probs=25.7
Q ss_pred eEEEEeccCcccchhHHHHHhhccCCch
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+|||+|||..+++++|...|++||...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 29 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF 29 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE
Confidence 4799999999999999999999999764
No 351
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.91 E-value=0.045 Score=40.08 Aligned_cols=33 Identities=21% Similarity=0.009 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
......+|||+|||..+++++|...|.+||...
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~ 63 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLK 63 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 345567899999999999999999999999764
No 352
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.81 E-value=0.023 Score=41.00 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=27.5
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
..+..+|||+|||..+++++|...|.+||..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v 52 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEK 52 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 3456799999999999999999999999875
No 353
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=93.76 E-value=0.023 Score=39.52 Aligned_cols=31 Identities=13% Similarity=-0.162 Sum_probs=27.0
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
.....+|||+|||..+++++|...|.++|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v 43 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEI 43 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcE
Confidence 3456789999999999999999999998754
No 354
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=93.75 E-value=0.044 Score=38.94 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=27.1
Q ss_pred cceeEEEEeccCccc------chhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVV------DGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~~~~ 138 (290)
....+|||+|||..+ +..+|...|++||....
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~ 50 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN 50 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE
Confidence 345789999999999 67899999999998643
No 355
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=93.74 E-value=0.036 Score=42.72 Aligned_cols=27 Identities=4% Similarity=-0.104 Sum_probs=24.4
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccC
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
...+|||+|||..+++++|...|..||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G 80 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIG 80 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHC
Confidence 457899999999999999999999999
No 356
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.74 E-value=0.044 Score=40.89 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|++||...
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 91 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT 91 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999999864
No 357
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=93.67 E-value=0.029 Score=39.51 Aligned_cols=29 Identities=14% Similarity=-0.079 Sum_probs=24.2
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
.....+|||+|||..+++++|...|.+||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 44 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN 44 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 44567899999999999999999999998
No 358
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=93.62 E-value=0.024 Score=42.12 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=28.8
Q ss_pred cCcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+|||+|||..+++++|...|.+||...
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~ 74 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIA 74 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 345567899999999999999999999999864
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=93.51 E-value=0.042 Score=37.30 Aligned_cols=27 Identities=7% Similarity=-0.271 Sum_probs=24.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhcc
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKY 133 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (290)
....+|||+|||..+++++|...|.++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999999
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.51 E-value=0.061 Score=39.71 Aligned_cols=31 Identities=6% Similarity=-0.129 Sum_probs=27.0
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
....|||+||+..++++.|...|++||....
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~ 54 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQR 54 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE
Confidence 3456899999999999999999999998643
No 361
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.46 E-value=0.045 Score=37.45 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=25.2
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCc
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPN 136 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~ 136 (290)
...+|||+|||..+++++|...|.+| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v 31 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DL 31 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-Ce
Confidence 45789999999999999999999998 54
No 362
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=93.39 E-value=0.056 Score=42.55 Aligned_cols=32 Identities=22% Similarity=0.056 Sum_probs=28.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|++||...
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~ 116 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK 116 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 34568999999999999999999999999764
No 363
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=93.29 E-value=0.042 Score=41.09 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.9
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|||..+++++|...|+.||...
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~ 70 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE 70 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 44557899999999999999999999998753
No 364
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=93.18 E-value=0.051 Score=44.69 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=24.4
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccC
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
...+|||+||+..+++++|...|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G 93 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLG 93 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHC
Confidence 567899999999999999999999999
No 365
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.16 E-value=0.043 Score=39.91 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=28.3
Q ss_pred cCcceeEEEE--eccCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIF--FILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+||| |||+..+++++|...|++||...
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~ 55 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD 55 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE
Confidence 3445678999 77999999999999999999764
No 366
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.06 E-value=0.077 Score=39.50 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=28.0
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
..-..|||+||+..+++++|...|++||....
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~ 57 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLK 57 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEE
Confidence 44567899999999999999999999998653
No 367
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.96 E-value=0.065 Score=39.69 Aligned_cols=30 Identities=17% Similarity=-0.126 Sum_probs=26.1
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
.....+|||+|||..+++++|...|++|+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i 68 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEI 68 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCc
Confidence 345678999999999999999999999943
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.064 Score=39.87 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=27.2
Q ss_pred eEEEEecc----CcccchhHHHHHhhccCCchhh
Q 022930 110 FFLIFFIL----GRVVDGREITVQFAKYGPNAEK 139 (290)
Q Consensus 110 ~~l~v~~l----~~~~~~~~l~~~f~~~g~~~~~ 139 (290)
++|||+|| |..+++..|...|+.||+....
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~ 36 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHF 36 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 68999999 9999999999999999986543
No 369
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.82 E-value=0.078 Score=36.33 Aligned_cols=28 Identities=11% Similarity=-0.071 Sum_probs=25.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhcc
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKY 133 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (290)
.....+|||+|||..+++++|...|..+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC
Confidence 3456789999999999999999999998
No 370
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.58 E-value=0.059 Score=43.01 Aligned_cols=30 Identities=7% Similarity=-0.203 Sum_probs=27.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+|||+|||..++.++|...|++||...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 137 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL 137 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999854
No 371
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=92.50 E-value=0.074 Score=41.26 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=28.5
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.....+|||+||+..+++++|...|++||....
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~ 75 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLK 75 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE
Confidence 444577999999999999999999999998643
No 372
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=91.62 E-value=0.024 Score=41.12 Aligned_cols=32 Identities=16% Similarity=-0.028 Sum_probs=28.3
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCchh
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNAE 138 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~~ 138 (290)
.+..+|||+|||..+++++|...|.+||....
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKT 36 (116)
Confidence 35678999999999999999999999998754
No 373
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.25 E-value=1.3 Score=30.22 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=48.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh
Q 022930 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (290)
Q Consensus 11 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 77 (290)
.+.++|-|-|-|||..+-..++.-...-.|---.|..+ -|-|.|.|.+.++...||+.|
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 35678889999999999999888778888866677766 467999999999999998865
No 374
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=92.24 E-value=0.078 Score=39.28 Aligned_cols=32 Identities=6% Similarity=-0.081 Sum_probs=26.4
Q ss_pred CcceeEEEEeccCcccchhHHH----HHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREIT----VQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~~~ 137 (290)
..+..+|||+|||..++..+|. ..|++||...
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~ 61 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDIL 61 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE
Confidence 3456789999999999988765 6899999874
No 375
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.73 E-value=0.075 Score=37.27 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=25.3
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccC
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
..+..+|||+|||..+++++|...|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~ 40 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV 40 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe
Confidence 44567899999999999999999999764
No 376
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=0.13 Score=36.96 Aligned_cols=26 Identities=4% Similarity=-0.088 Sum_probs=24.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhcc
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKY 133 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (290)
...+|||+|||..+++++|...|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~ 40 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL 40 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC
Confidence 34689999999999999999999998
No 377
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=90.34 E-value=1.7 Score=29.99 Aligned_cols=34 Identities=9% Similarity=0.316 Sum_probs=27.1
Q ss_pred CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
+|..|.++.. ..||.||++...+++..+|..+.|
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 4667766532 589999999999988888887777
No 378
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.30 E-value=0.15 Score=42.12 Aligned_cols=32 Identities=13% Similarity=-0.059 Sum_probs=27.7
Q ss_pred CcceeEEEEeccCccc---------chhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVV---------DGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~~~ 137 (290)
...+.+|||+||+..+ +++.|...|.+||++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~ 171 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID 171 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE
Confidence 3456789999999998 6999999999999864
No 379
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.19 E-value=0.2 Score=35.00 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=23.3
Q ss_pred ceeE-EEEeccCcccchhH----HHHHhhccC-Cc
Q 022930 108 LFFF-LIFFILGRVVDGRE----ITVQFAKYG-PN 136 (290)
Q Consensus 108 ~~~~-l~v~~l~~~~~~~~----l~~~f~~~g-~~ 136 (290)
++.+ |||+|||..++.+. |...|.+|| ..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~V 41 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKV 41 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCee
Confidence 3455 88999999999887 558999996 54
No 380
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.72 E-value=0.34 Score=33.47 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=24.8
Q ss_pred cceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 107 FLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.+..+|||+|| .+++++|...|.+||...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~ 41 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII 41 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE
Confidence 45678999996 899999999999999753
No 381
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=87.40 E-value=1.6 Score=28.70 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=41.0
Q ss_pred EEEEcC-CCCCCCHHHHHHHHhcCC-----CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccccccccee
Q 022930 17 SLLVLN-ITFRTTADDLFPLFEKYG-----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 17 ~l~V~n-L~~~~t~~~L~~~F~~~G-----~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+|||.. --..++..+|..++..-+ .|-.|.|..+ |.||+... +.|..++..|++..+.++.+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566642 234578888888887544 4667777533 89999886 45778889999988888776653
No 382
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=84.55 E-value=0.71 Score=33.53 Aligned_cols=30 Identities=10% Similarity=-0.090 Sum_probs=25.4
Q ss_pred CcceeEEEEeccCcccchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~~ 137 (290)
.....+|||+|| .+++++|...|++||...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~ 65 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNII 65 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEE
Confidence 345678999996 699999999999999864
No 383
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=84.25 E-value=0.6 Score=40.74 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=28.6
Q ss_pred cCcceeEEEEec--cCcccchhHHHHHhhccCCch
Q 022930 105 IGFLFFFLIFFI--LGRVVDGREITVQFAKYGPNA 137 (290)
Q Consensus 105 ~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~~~ 137 (290)
...+..+||||| |+..+++++|...|++||...
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~ 48 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD 48 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE
Confidence 466778999999 568899999999999999864
No 384
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.13 E-value=1.3 Score=32.25 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=27.4
Q ss_pred CcceeEEEEeccCcc-cchhHHHHHhhccCCch
Q 022930 106 GFLFFFLIFFILGRV-VDGREITVQFAKYGPNA 137 (290)
Q Consensus 106 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~~~ 137 (290)
......|+|+||+.. ++.++|...|++||+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~ 47 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK 47 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE
Confidence 344567999999999 99999999999998754
No 385
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=76.80 E-value=8.4 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=42.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
..+|.|.++.-..=...|...+.. ..|..+.+... .+-+.|+|.+.++...||..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 357889999877777889999988 77888877654 56788888866777777774
No 386
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.09 E-value=8.2 Score=29.79 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=37.0
Q ss_pred EEEEcCCCCC---------CCHHHHHHHH--hcCCCeEEEEEcccCCCCCcceEEEEEEccHHH-HHHHHH
Q 022930 17 SLLVLNITFR---------TTADDLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE-AQKAVD 75 (290)
Q Consensus 17 ~l~V~nL~~~---------~t~~~L~~~F--~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~-a~~Al~ 75 (290)
+++|-|+|.. ....+|.+.| ..|.++.-..+ .++ ..+.|+|.|+|..-.. -..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4778898872 3346899977 89988764444 332 3467899999996543 333443
No 387
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.19 E-value=7.7 Score=26.28 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
.|+-.+...++..+|++.+++ || +|..|..+.-+ .| .-=|||.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 455557779999999999876 56 66777655432 11 23599999988777765443
No 388
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=68.78 E-value=18 Score=22.53 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc----cHHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~----~~~~a~~Al~~ 76 (290)
.+|.|.|+.-..=...|...+.....|..+.+... .+-+.|+|. +.++...||..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788888776666789999999888888777654 467889985 45667777764
No 389
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=65.19 E-value=0.99 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc
Q 022930 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (290)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~ 65 (290)
+||.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4666778888888765442 789999976
No 390
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=64.00 E-value=8.6 Score=30.55 Aligned_cols=37 Identities=8% Similarity=0.299 Sum_probs=28.6
Q ss_pred eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcccc
Q 022930 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLFLN 83 (290)
Q Consensus 42 I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~~~ 83 (290)
|.+|.... ..+||-|||=..+.++..||+.+.+.+..
T Consensus 139 I~Si~~~d-----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQRD-----NYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEECCT-----TSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEecC-----CCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 66665532 35899999999999999999988885443
No 391
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=60.05 E-value=24 Score=20.85 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc---cHHHHHHHHHHh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRL 77 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~---~~~~a~~Al~~l 77 (290)
++.|.|+.-..-...|...+.....|..+.+... .+.+.|.|. +.+....+|..+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4667777665556778889988877888777544 457788886 345555566543
No 392
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=59.70 E-value=26 Score=21.09 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc---HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~---~~~a~~Al~~ 76 (290)
.++.|.|+.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35788888766566788899988888888877654 4577888864 3444555553
No 393
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=59.67 E-value=29 Score=21.66 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
...++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3456889999877777889999988877777766544 4578888864 35556666654
No 394
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.91 E-value=24 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=26.3
Q ss_pred eEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 42 I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
|..|.++.. ..||.||++...+++..++..+.|
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCC
Confidence 666666532 589999999999888888887777
No 395
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=57.25 E-value=30 Score=24.37 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHh-cCCC---eEEE-EEcccCCCCCcceEEEEEEccHHHHHH
Q 022930 25 FRTTADDLFPLFE-KYGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 25 ~~~t~~~L~~~F~-~~G~---I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.+++..+|.+.+. .|+. ++-| .|...-..|++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567788877664 3442 2223 34444445778889877 888777765
No 396
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.12 E-value=4.7 Score=25.65 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.0
Q ss_pred CCCeEEEEEcccCCCCCcceEEEEEEccH
Q 022930 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (290)
Q Consensus 39 ~G~I~~v~i~~d~~tg~~~g~afV~F~~~ 67 (290)
.|+|+.|... ++.|||.|+|.
T Consensus 27 lGtV~kV~~~--------~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSA--------REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETT--------TTEEEEEETTT
T ss_pred EeEEEEEecC--------CcEEEEEEccC
Confidence 4777776543 56899999863
No 397
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=57.02 E-value=29 Score=20.84 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=37.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc---HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~---~~~a~~Al~~ 76 (290)
.++.|.|+.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 45788888665556778899988888888877654 4578888874 3444455554
No 398
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=56.81 E-value=10 Score=23.36 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc---cHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVD 75 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~---~~~~a~~Al~ 75 (290)
.++.|.|+.-..-...|...+.....|..+.+... .+-+.|.|. +.++...||.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHH
Confidence 46888888776667889999999888888877654 456788884 3445555555
No 399
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=56.66 E-value=11 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=28.5
Q ss_pred CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q 022930 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGLF 81 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 81 (290)
.|.+|....+ .+||-|||=..+.++..||+.+.+..
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4777766543 48999999999999999988776644
No 400
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=55.03 E-value=16 Score=27.19 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
.||.-+...++..+|.+.+++ || .|..|..+.-+. | .-=|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHH
Confidence 455556778999999988865 55 667776554331 1 2249999987777665444
No 401
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=54.04 E-value=34 Score=20.64 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=38.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45788888665555678888988877887777544 4578888863 4455556654
No 402
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=53.75 E-value=51 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHh-cCC---CeEEE-EEcccCCCCCcceEEEEEEccHHHHHH
Q 022930 25 FRTTADDLFPLFE-KYG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 25 ~~~t~~~L~~~F~-~~G---~I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.+++..+|++.+. .|+ .+.-| .|...-..|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677888887664 344 22223 34444455778889877 787777654
No 403
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=53.69 E-value=17 Score=27.35 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
.||.-+...++..||.+.+++ || .|..|..+.-+ .| .--|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHHh
Confidence 444456778999999988865 55 66777655433 11 22599999877776655443
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=53.52 E-value=53 Score=22.80 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHh-cCC---CeEEE-EEcccCCCCCcceEEEEEEccHHHHHHH
Q 022930 25 FRTTADDLFPLFE-KYG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (290)
Q Consensus 25 ~~~t~~~L~~~F~-~~G---~I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~A 73 (290)
.+++..+|++.+. .|+ .++-| .|...-..|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677888887764 344 22333 34444445678888877 7777766553
No 405
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=52.63 E-value=42 Score=21.39 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=41.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc----cHHHHHHHHHHh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~----~~~~a~~Al~~l 77 (290)
..+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|. +.+....+|..+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 356889898777667789999999888888887554 457888885 345556666643
No 406
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=52.27 E-value=12 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEE
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDV 45 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v 45 (290)
..+.|+|||++++..-|..++.. +.+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 56899999999999999999987 555433
No 407
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=52.26 E-value=14 Score=34.94 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHh----cCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh
Q 022930 22 NITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (290)
Q Consensus 22 nL~~~~t~~~L~~~F~----~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 77 (290)
.++.+.+--||..+|- .+|-|+++.|...+ -.....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 3444555557888883 67889988775543 2334567899999999999988755
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=51.11 E-value=9.4 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHh-cCCCeEEEEEcc----cCCCCCcceEEEEEEccHHHHHH
Q 022930 25 FRTTADDLFPLFE-KYGKVVDVFIPR----DRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 25 ~~~t~~~L~~~F~-~~G~I~~v~i~~----d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.+++..+|.+.+. .|+.-..+.++. .-..|++.|||.| |.+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3567778876664 343222222222 2233567788877 666665543
No 409
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=50.95 E-value=36 Score=20.13 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=39.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.++.|.|+.-..-...|...+.....|..+.+... .+.+.|.|.. .+....++..
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35788888776667788999998877888777544 4578888863 3445555553
No 410
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=50.80 E-value=71 Score=23.45 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHh-cCCC---eEEE-EEcccCCCCCcceEEEEEEccHHHHHH
Q 022930 25 FRTTADDLFPLFE-KYGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 25 ~~~t~~~L~~~F~-~~G~---I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.+++..+|.+.+. .|+. ++-| .|...-..|.+.|||.| |.+.+.|..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899998884 5652 2222 33344445678888888 788777664
No 411
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=49.40 E-value=5 Score=33.65 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i 47 (290)
..++|+|||++++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45799999999999999999986555544433
No 412
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=49.01 E-value=37 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=21.1
Q ss_pred CCCeEEEEEcccCCCCCcceEEEEEEc---cHHHHHHHHHHhCC
Q 022930 39 YGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRLDG 79 (290)
Q Consensus 39 ~G~I~~v~i~~d~~tg~~~g~afV~F~---~~~~a~~Al~~l~g 79 (290)
+-.|+.|.|-.| ..+|.|-|. +.++.+.++++|+.
T Consensus 43 ~vtVt~V~vS~D------l~~AkVyvs~~~~~~~~~~~~~~L~~ 80 (129)
T 2e7g_A 43 NVELSKVSLTPD------FSACRAYWKTTLSAEQNAHMEAVLQR 80 (129)
T ss_dssp TCCEEEEEECTT------SCCEEEEECCCSCHHHHHHHHHHHHH
T ss_pred eeEEEEEEECCC------CcEEEEEEEecCChhhHHHHHHHHHH
Confidence 458999999877 455644443 45544445554444
No 413
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=48.91 E-value=42 Score=20.20 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=39.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHh
Confidence 45778888776666778999998888888877554 4578888863 4555666664
No 414
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=48.03 E-value=45 Score=20.37 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887665555678888988888888877554 4578888863 45556666643
No 415
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=47.52 E-value=70 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~ 43 (290)
-.+.+|.|++.-..++.+++.++...+|-..
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v 63 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGGKV 63 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEe
Confidence 4556666666656789999999999998653
No 416
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=46.98 E-value=67 Score=22.04 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.+|.|.++.-..-...|...+...-.|..+.+... .+.+.|.|.. .++...+|..
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788888777677889999998877888877654 4678899874 3445555554
No 417
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.86 E-value=44 Score=24.06 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=25.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE
Q 022930 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (290)
Q Consensus 12 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~ 43 (290)
+-.+.+|+|.++. ..+.++|..++..+|-..
T Consensus 22 ~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 22 ILQGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp TSTTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred cCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 4567899999987 567889999999999653
No 418
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=46.65 E-value=47 Score=20.15 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=39.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
..+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....++..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357889999877667788999998888888877544 4578888864 2334444543
No 419
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=46.57 E-value=26 Score=31.21 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=36.6
Q ss_pred EEEcCCCCCCC----HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 18 LLVLNITFRTT----ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 18 l~V~nL~~~~t----~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
-+||||..-.. ...+.++..+||.|..+.+. +.-+|...+++.|..++..
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh
Confidence 57999865432 34567778899999888874 2456778899999988863
No 420
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=46.48 E-value=24 Score=32.29 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc---CCCeEEEEEcccCCCCCcceEEEE-EEccHHHHHHHHHHhCCccccccccceeh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEK---YGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVDRLDGLFLNFNFVHEIL 91 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~---~G~I~~v~i~~d~~tg~~~g~afV-~F~~~~~a~~Al~~l~g~~~~~~~~~~~~ 91 (290)
.+|.|+-||+.++.+.|.+.... -+.|..|.=+.|- +. -.|+-|| ++.....++..+..|-.
T Consensus 276 ~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDe-sd-~~gvrivIelk~~~~~e~vl~~L~k------------ 341 (514)
T 2inr_A 276 KQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDE-TD-RTGLRIAIELKKDVNSESIKNYLYK------------ 341 (514)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEEC-CB-TTBCCEEEEC------CHHHHHHTT------------
T ss_pred cEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhc-CC-CCceEEEEEECCCcCHHHHHHHHHH------------
Confidence 67999999999998887765442 2444333333342 22 1345554 45544444444433222
Q ss_pred hhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhc
Q 022930 92 KSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAK 132 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 132 (290)
...+....+. ++.+++.+.|..++-.+|...|-.
T Consensus 342 ------~t~Lq~s~~~-Nm~al~~g~p~~~~l~~iL~~f~~ 375 (514)
T 2inr_A 342 ------NSDLQISYNF-NMVAISDGRPKLMGIRQIIDSYLN 375 (514)
T ss_dssp ------SSTTEEEEEE-ECEEEETTEEEECCHHHHHHHHHH
T ss_pred ------hcCceeeeee-eEEEeeCCEEEECCHHHHHHHHHH
Confidence 1222222222 344557778887777777776654
No 421
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=46.33 E-value=9.6 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.0
Q ss_pred CCCeEEEEEcccCCCCCcceEEEEEEccH
Q 022930 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (290)
Q Consensus 39 ~G~I~~v~i~~d~~tg~~~g~afV~F~~~ 67 (290)
+|+|..|... ++.|||.|.|.
T Consensus 44 LGTI~kV~~~--------~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSA--------REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETT--------TTEEEEEETTS
T ss_pred eEEEEEeccC--------CCEEEEEEcCC
Confidence 4777766554 45899999873
No 422
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=46.31 E-value=33 Score=20.69 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45778887655445678888888877777766544 4578888863 45556666644
No 423
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=46.17 E-value=39 Score=20.90 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=38.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45788888766666778899988877877666433 4568888863 45556666644
No 424
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=45.15 E-value=53 Score=24.56 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHhc-CCC---eEEE-EEcccCCCCCcceEEEEEEccHHHHHH
Q 022930 25 FRTTADDLFPLFEK-YGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 25 ~~~t~~~L~~~F~~-~G~---I~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.+++..||.+.+.. |+. ++-| .|...-..|.+.|||.| |.+.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46777888877754 542 2222 34334345678888888 788777764
No 425
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=45.12 E-value=16 Score=27.46 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=35.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al 74 (290)
.||..+...++..+|.+.+++ || .|..|..+.-+ .| .-=|||.+....+|....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHH
Confidence 445556678888889888865 45 66777654432 11 235999999777666543
No 426
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=44.64 E-value=11 Score=24.08 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=8.8
Q ss_pred ceEEEEEEcc
Q 022930 57 RGFAFVRYKY 66 (290)
Q Consensus 57 ~g~afV~F~~ 66 (290)
.|.|+|.|.|
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6799999986
No 427
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=44.50 E-value=14 Score=32.08 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc
Q 022930 17 SLLVLNITFRTTADDLFPLFEK 38 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~ 38 (290)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999988888874
No 428
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=44.25 E-value=35 Score=22.43 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...||..+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45778887655555678899988888888877654 4678888863 45556666654
No 429
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.14 E-value=4 Score=25.56 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=8.5
Q ss_pred ceEEEEEEcc
Q 022930 57 RGFAFVRYKY 66 (290)
Q Consensus 57 ~g~afV~F~~ 66 (290)
++.|||.|.|
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 5689999986
No 430
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=43.93 E-value=42 Score=22.79 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=16.6
Q ss_pred cceEEEEEEccHHHHHHHHH
Q 022930 56 SRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 56 ~~g~afV~F~~~~~a~~Al~ 75 (290)
......|+|.+.+.|.+++.
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45678999999999988766
No 431
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=43.85 E-value=51 Score=19.76 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=36.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc---cHHHHHHHHHHh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRL 77 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~---~~~~a~~Al~~l 77 (290)
+|.|.|+.-..-...|...+.....|..+.+... .+.+.|.|. +.+....+|..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5778787655555678888888877877766543 457788886 344555566543
No 432
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=43.72 E-value=83 Score=22.15 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=33.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-------CCCeEEEEEcccCCCCCcce--EE-EEEEccHHHHHH
Q 022930 17 SLLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSRG--FA-FVRYKYADEAQK 72 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~-------~G~I~~v~i~~d~~tg~~~g--~a-fV~F~~~~~a~~ 72 (290)
-|.+-.|...++++++.++.+. ...|..+.+-.+. ++...| +| +++|++.++...
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~-s~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADL-GLAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECC-SCSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCC-CCCCCCeeEEEEEEECCHHHHHH
Confidence 3556688889988876665543 4456777665553 233333 34 567887776653
No 433
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.61 E-value=71 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 022930 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV 42 (290)
Q Consensus 13 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I 42 (290)
-.+.+|.|.+.-..++.+++.++...+|-.
T Consensus 23 l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggk 52 (112)
T 2ebu_A 23 LEGLIFVITGVLESIERDEAKSLIERYGGK 52 (112)
T ss_dssp STTCEEEECSCCSSSCHHHHHHHHHHTTCE
T ss_pred cCCCEEEEeeeCCCCCHHHHHHHHHHcCCE
Confidence 345677777766678999999999999864
No 434
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=42.43 E-value=70 Score=22.92 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc----cHHHHHHHHHHh
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~----~~~~a~~Al~~l 77 (290)
+|.|.++.-..-...|...+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3555555544444555555555555554444322 345666665 344455555543
No 435
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=42.36 E-value=16 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=19.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcC
Q 022930 17 SLLVLNITFRTTADDLFPLFEKY 39 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~ 39 (290)
.+.|+|||+.++...|..++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 58999999999999888888754
No 436
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.80 E-value=23 Score=24.54 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHH-hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 22 NITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 22 nL~~~~t~~~L~~~F-~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.++--+.-+||..-. ..||.-..+....+ -+.|-..+.+|..+||+.|+-
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDr 73 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 73 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHH
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHcc
Confidence 456677888887655 57888777766522 378999999999999998776
No 437
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=41.53 E-value=92 Score=22.09 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHh-------cCCCeEEEEEcccCCC-CCcce--EE-EEEEccHHHHHHHH
Q 022930 17 SLLVLNITFRTTADDLFPLFE-------KYGKVVDVFIPRDRRT-GDSRG--FA-FVRYKYADEAQKAV 74 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~~g--~a-fV~F~~~~~a~~Al 74 (290)
-|.+-.|...++++++.++++ +...|..+.+-.+... +...| +| +++|++.++....+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 455668988988876655543 3566777777655321 33334 34 56888887765433
No 438
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=41.37 E-value=26 Score=24.92 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred cceEEEEEEccHH-----HHHHHHHHhCC
Q 022930 56 SRGFAFVRYKYAD-----EAQKAVDRLDG 79 (290)
Q Consensus 56 ~~g~afV~F~~~~-----~a~~Al~~l~g 79 (290)
..||.||++.-.+ ++-..|..+.|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6899999998766 67777777777
No 439
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=41.07 E-value=59 Score=19.73 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc--HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY--ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~--~~~a~~Al~~l 77 (290)
.+|.|.|+.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 35788888776666778999998888888877654 4578888875 34445555543
No 440
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=40.30 E-value=8 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEE
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDV 45 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v 45 (290)
...|+|||++++...|..++...+.+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 35899999999999999999876555433
No 441
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=39.95 E-value=20 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=33.2
Q ss_pred EEcCCCCCC---CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 19 LVLNITFRT---TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 19 ~V~nL~~~~---t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
+||||..-. ....+.++.++||+|..+.|.. .-+|...+++.+..++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 578875432 2345677889999998887742 23566778888887764
No 442
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=39.80 E-value=90 Score=22.58 Aligned_cols=47 Identities=2% Similarity=0.027 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 29 ~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.+++.+.+..+.+|..|..+. |...-++.|.+.+.++....+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 567888888999999998763 44456788999999999999887765
No 443
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.59 E-value=22 Score=24.96 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=23.1
Q ss_pred ceeEEEEeccCcccchhHHHHHhhcc
Q 022930 108 LFFFLIFFILGRVVDGREITVQFAKY 133 (290)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (290)
...+|.|.|||..++.+.|...|.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~ 32 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENR 32 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCT
T ss_pred CccEEEEECCCCCCChhHheEEEeCC
Confidence 45689999999999999999999984
No 444
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=39.34 E-value=61 Score=22.19 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHH-hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 22 NITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 22 nL~~~~t~~~L~~~F-~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.++--+.-++|..-. ..||.-..+..+.+ --.|-..+.++..+||+.|+-
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 466678888887665 57888777776633 367889999999999998765
No 445
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=39.28 E-value=16 Score=29.90 Aligned_cols=27 Identities=11% Similarity=-0.079 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKV 42 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I 42 (290)
..+.|+|||++++..-|..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 348999999999999999998865433
No 446
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=38.94 E-value=26 Score=30.93 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=36.6
Q ss_pred EEEcCCCCCC---CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 18 LLVLNITFRT---TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 18 l~V~nL~~~~---t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
-+||||..-. ....+.++..+||.|..+.+. +.-+|.+.+++.+..++..
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 4678875431 235677888999999888763 3567888999999998863
No 447
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=38.81 E-value=58 Score=18.96 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=36.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.++.|.++.-..-...|...+...-.|..+.+... .+.+.|.|.. .+....+|..
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778887655445668888888877877776544 4578888863 3445555553
No 448
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.47 E-value=18 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=16.6
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CCC
Q 022930 19 LVLNITFRTTADDLFPLFEK-YGK 41 (290)
Q Consensus 19 ~V~nL~~~~t~~~L~~~F~~-~G~ 41 (290)
+|.+|...||-+||...|.+ .|+
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EEECCCCCCcHHHHHHHHHhccCC
Confidence 45578999999999886544 453
No 449
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.32 E-value=28 Score=24.20 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=23.7
Q ss_pred cceeEEEEeccCc--ccc---------hhHHHHHhhccCCchhh
Q 022930 107 FLFFFLIFFILGR--VVD---------GREITVQFAKYGPNAEK 139 (290)
Q Consensus 107 ~~~~~l~v~~l~~--~~~---------~~~l~~~f~~~g~~~~~ 139 (290)
.+...|+|.||.. .+. +++|...|++||.....
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v 56 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL 56 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEE
Confidence 4466799999833 322 47899999999987543
No 450
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=37.92 E-value=66 Score=19.36 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888898776666778999988877877776544 4578888863 45555556543
No 451
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=35.86 E-value=62 Score=23.06 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=31.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc----cHHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~----~~~~a~~Al~~l 77 (290)
.+|.|.|+.-..-...|...+.....|..+.+... .+.+.|.|. +.++...+|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 34666666554444556666666666666655433 345667765 344555555543
No 452
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=35.54 E-value=44 Score=29.68 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=29.2
Q ss_pred EEEcCCCCCC--CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 18 LLVLNITFRT--TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 18 l~V~nL~~~~--t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
-+||||..-. ....+.++..+||.|..+.+. +.-+|...+++.+..++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 5678875432 234567788899999888763 345777889998888874
No 453
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=35.13 E-value=45 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.9
Q ss_pred CeEEEEEcccCCCCCcceEEEEEEcc
Q 022930 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~afV~F~~ 66 (290)
+|+.|.|..-...|+.++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 67888886655568999999999974
No 454
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=34.75 E-value=25 Score=32.17 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=30.8
Q ss_pred HHHHHH--hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHh
Q 022930 31 DLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (290)
Q Consensus 31 ~L~~~F--~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 77 (290)
+|..+| ..||-|+++.|...+. ......+++.|.+.++|..|+.++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~~~~ 264 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIVDAL 264 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHHHHH
Confidence 456677 3689999888765542 333456789999888876655433
No 455
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=34.75 E-value=28 Score=22.78 Aligned_cols=57 Identities=16% Similarity=-0.017 Sum_probs=36.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc-cHHHHHHHHHH
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~-~~~~a~~Al~~ 76 (290)
...+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|. +.++...||..
T Consensus 22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHH
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHH
Confidence 3456777777655445678888887777777766544 356777764 34555566654
No 456
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=40.63 E-value=8.4 Score=27.21 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEE--EEEEccHHHHHHHHHHhCC
Q 022930 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA--FVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 14 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~a--fV~F~~~~~a~~Al~~l~g 79 (290)
...||.|..+. .+++|..|..+.+ +..+.+......|+. -|. |-.|.+.++|..|+..|..
T Consensus 24 ~~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 24 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 35677776553 4566777777776 444555443222332 232 4589999999999998876
No 457
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=34.10 E-value=69 Score=21.60 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHH-hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 22 NITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 22 nL~~~~t~~~L~~~F-~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.++.-+.-++|..-. ..||.-..+..+.+ --.|-..+.+|..+|++.|+-
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhcc
Confidence 456667778887655 57888777766533 257889999999999998765
No 458
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=33.57 E-value=63 Score=24.41 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCHHHHHHHHhcCCCe---EEEEEcccCCCCCcceEEEEE
Q 022930 27 TTADDLFPLFEKYGKV---VDVFIPRDRRTGDSRGFAFVR 63 (290)
Q Consensus 27 ~t~~~L~~~F~~~G~I---~~v~i~~d~~tg~~~g~afV~ 63 (290)
.|+++|.++-.+.|++ +.+.|..+..+|..+.|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5899999999999987 456676664488888888753
No 459
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=33.57 E-value=75 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc
Q 022930 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (290)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~ 66 (290)
-+|.+.+..+| |....|..+..++ .=|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 36778888888 5555555543222 3489999988
No 460
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.53 E-value=59 Score=21.77 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=35.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEcccCCCCCcceEEEEEEccHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~ 72 (290)
.|+-.+...++..+|++.+++ || +|..|..+.-+ ...--|||.+....+|..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHH
Confidence 455567789999999998875 56 67777655433 112359999987666543
No 461
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=33.18 E-value=56 Score=24.48 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=18.7
Q ss_pred cceEEEEEEccHHHHHHHHHHhCC
Q 022930 56 SRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 56 ~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
..||.||++...+++-..+..+.|
T Consensus 51 fpgYvFV~~~~~~~~~~~v~~~~g 74 (162)
T 2oug_A 51 FPNYLFVEFDPEVIHTTTINATRG 74 (162)
T ss_dssp STTEEEEEECTTTSCHHHHHHSTT
T ss_pred CCCEEEEEEEcccCceEEEEeCCC
Confidence 579999999976666667777777
No 462
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.00 E-value=75 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEc
Q 022930 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIP 48 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~-~G-~I~~v~i~ 48 (290)
.|+-.+...++..+|++.+++ || .|..|..+
T Consensus 29 ~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~ 61 (93)
T 3r8s_T 29 TIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTL 61 (93)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceEEEEEE
Confidence 556667789999999998875 56 56666543
No 463
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=32.74 E-value=69 Score=28.89 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHh----cCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 23 ITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 23 L~~~~t~~~L~~~F~----~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
+..+.+.-+|..+|- .||-|+++.|...+. ......+++.|.+.++|..|+..+.
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHHH
Confidence 334444446666663 467788887765442 3335578999999999999887664
No 464
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=32.64 E-value=33 Score=20.62 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
++.|.|+.-..-...|...+... .|..+.+... .+.+.|.|...+....+|.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHH
Confidence 46676765544456688888877 6777766544 4578888876533344444
No 465
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=32.59 E-value=72 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCeEEEEEcccCCCCCcceEEEEEEc---cHHHHHHHHHHhCC
Q 022930 39 YGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRLDG 79 (290)
Q Consensus 39 ~G~I~~v~i~~d~~tg~~~g~afV~F~---~~~~a~~Al~~l~g 79 (290)
+-.|+.|.|-.| ..+|.|-|. +.++.+.+++.|+.
T Consensus 35 ~vtVt~V~vs~D------l~~AkVyvs~~g~~~~~~~~~~~L~~ 72 (106)
T 2kzf_A 35 FVTFSRVELSKD------KRYADVYVSFLGTPEERKETVEILNR 72 (106)
T ss_dssp GCCEEEEEECTT------SCEEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCC------CCEEEEEEEeCCChhhHHHHHHHHHH
Confidence 347889999877 456655443 35555566665554
No 466
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=32.51 E-value=78 Score=18.56 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=37.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVD 75 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~ 75 (290)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~ 62 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIA 62 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHH
Confidence 35788888776666778888888877877776544 4578888864 344455555
No 467
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=31.33 E-value=67 Score=22.27 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHH-hcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 22 NITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 22 nL~~~~t~~~L~~~F-~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.++.-+.-++|.+-. ..||.-..+..+.+ --.|-..+.+|..+|++.|+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 456667777877655 46887777766533 256888999999999998765
No 468
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=31.07 E-value=43 Score=31.19 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHh----cCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 23 ITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 23 L~~~~t~~~L~~~F~----~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
++.+.+.-+|..+|- .||-|+++.|...+. .....++++.|.+.++|..|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEec-ccceEEEEEEcCCHHHHHHHHHHHH
Confidence 333334446666663 467888887765542 2334578899999999998887654
No 469
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=30.99 E-value=93 Score=19.00 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHH
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~ 76 (290)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....++..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778888665455678888888777776665433 4578888863 3445555654
No 470
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=30.74 E-value=1.3e+02 Score=20.43 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------cCCCeEEEEEcccCCCCCcce--EE-EEEEccHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFE-------KYGKVVDVFIPRDRRTGDSRG--FA-FVRYKYADEAQK 72 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~-------~~G~I~~v~i~~d~~tg~~~g--~a-fV~F~~~~~a~~ 72 (290)
|.+-.|...++++++.++.+ +...|..+.+-.+.. +...| +| +++|++.++...
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 44557888888776655443 366788887766532 33333 34 568888776543
No 471
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.23 E-value=1.7e+02 Score=22.01 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 22 nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
.+++ ...+++.+.+..+.+|..|..+ +|...-++.|.+.+.++....+..+.
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4553 3457788889999999999885 45555678899999999888776443
No 472
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=30.19 E-value=26 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=14.1
Q ss_pred CCCeEEEEEcccCCCCCcceEEEEEEccH
Q 022930 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (290)
Q Consensus 39 ~G~I~~v~i~~d~~tg~~~g~afV~F~~~ 67 (290)
.|+|..|... .+.|+|.|.|.
T Consensus 21 lGtI~~V~~~--------~~~clV~F~D~ 41 (58)
T 4hcz_A 21 LGTIKKVDSA--------REVCLVQFEDD 41 (58)
T ss_dssp EEEEEEEETT--------TTEEEEEETTS
T ss_pred eEEEEEEecC--------CCEEEEEEcCC
Confidence 4667666443 44799999863
No 473
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=30.16 E-value=46 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=32.6
Q ss_pred EEEcCCCCCCC---HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 18 LLVLNITFRTT---ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 18 l~V~nL~~~~t---~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
-+||||..-.. ...+.++..+||.|..+.+. +.-+|.+.+++.+..++.
T Consensus 19 p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~---------~~~~v~v~~~~~i~~il~ 70 (476)
T 2fdv_A 19 PFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLG---------PRRVVVLCGHDAVREALV 70 (476)
T ss_dssp TTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred cccccHhhcCCcchHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 35788754211 24566777899999877663 134566788888888773
No 474
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.00 E-value=1.6e+02 Score=21.37 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q 022930 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 22 nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 79 (290)
.++. -..+++.+.+..+.+|..|..+ +|...-++.|.+.+.++....++.+..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 4543 3457888899999999999885 455556788999999999888765554
No 475
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=29.89 E-value=35 Score=23.22 Aligned_cols=25 Identities=4% Similarity=0.002 Sum_probs=22.3
Q ss_pred eEEEEeccCcccchhHHHHHhhccC
Q 022930 110 FFLIFFILGRVVDGREITVQFAKYG 134 (290)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g 134 (290)
.||.|-.||..++++++...++...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~ 26 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP 26 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc
Confidence 4899999999999999999988764
No 476
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=29.66 E-value=1.2e+02 Score=19.75 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEcc----HHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~----~~~a~~Al~~l 77 (290)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46888898777777789999988877877776544 4578888863 44555566543
No 477
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=29.40 E-value=50 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.6
Q ss_pred CCHHHHHHHHhcCCCeEEEEEc
Q 022930 27 TTADDLFPLFEKYGKVVDVFIP 48 (290)
Q Consensus 27 ~t~~~L~~~F~~~G~I~~v~i~ 48 (290)
.+++.|.++|..+|+|+.-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4567799999999999876664
No 478
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=29.32 E-value=16 Score=23.77 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.6
Q ss_pred CHHHHHHHHhcCCCeEE
Q 022930 28 TADDLFPLFEKYGKVVD 44 (290)
Q Consensus 28 t~~~L~~~F~~~G~I~~ 44 (290)
|--||.+++.+||.|..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 45689999999998754
No 479
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.15 E-value=63 Score=22.40 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=20.5
Q ss_pred CeEEEEEcccCCCCCcceEEEEEEcc
Q 022930 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~afV~F~~ 66 (290)
+|+.|.|..-...|+.++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 67888876655568899999999974
No 480
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.14 E-value=1.5e+02 Score=20.98 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEcccCCCCCcceEEEEEEc--cHHHHHHHHHHh
Q 022930 17 SLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRL 77 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~---~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~--~~~~a~~Al~~l 77 (290)
.|.|.++|..+..+-.+ .+-..|.--+...|+ |...|.--|.|. +.+..++||..|
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHH
Confidence 47788998777554222 223344422333343 333667777775 778888888754
No 481
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=29.06 E-value=1.3e+02 Score=20.55 Aligned_cols=44 Identities=5% Similarity=0.068 Sum_probs=28.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEE-EE-cccCCCCCcceEEEEEE
Q 022930 18 LLVLNITFRTTADDLFPLFEKYGKVVDV-FI-PRDRRTGDSRGFAFVRY 64 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~~G~I~~v-~i-~~d~~tg~~~g~afV~F 64 (290)
|.|++. ++...+|++++..+..|... .+ +.+. .+...-.+||+.
T Consensus 7 Iiv~G~--nv~P~eIE~~l~~~p~v~~~~~v~v~~~-~~~e~l~~~ve~ 52 (109)
T 3gxs_A 7 IILKGV--NIFPIQIETILLQFKELGSDYLITLETA-ESNDEMTVEVEL 52 (109)
T ss_dssp EEETTE--EECHHHHHHHHHTCTTEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred EEECCE--EECHHHHHHHHHhCCCcCCcEEEEEEcC-CCceEEEEEEEE
Confidence 677776 67889999999999888533 22 2222 233334678887
No 482
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=28.46 E-value=76 Score=22.93 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=20.1
Q ss_pred CeEEEEEcccCCCCCcceEE--EEEEc---cHHHHHHHHHHhCC
Q 022930 41 KVVDVFIPRDRRTGDSRGFA--FVRYK---YADEAQKAVDRLDG 79 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~a--fV~F~---~~~~a~~Al~~l~g 79 (290)
.|+.|.|-.| ..+| ||.+. +.++.+.+++.|+.
T Consensus 36 tVt~V~vS~D------l~~AkVyvs~~g~~~~~~~~~~~~~L~~ 73 (128)
T 1jos_A 36 TVSDVEVSSD------LSYAKIFVTFLFDHDEMAIEQGMKGLEK 73 (128)
T ss_dssp EEEEEEECTT------SCEEEEEEEESCCSCHHHHHHHHHHHHH
T ss_pred EEeEEEECCC------CCEEEEEEEeCCCCchhhHHHHHHHHHH
Confidence 6678888776 4455 55544 35555666665554
No 483
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=28.38 E-value=88 Score=21.28 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=36.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEcccCCCCCcceEEEEEEc--cHHHHHHHHHHhCC
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLDG 79 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~---I~~v~i~~d~~tg~~~g~afV~F~--~~~~a~~Al~~l~g 79 (290)
.|.|.-....+.+--|.++..+||- |..-.|- ...+..-|.-+|++. +.+++++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~--~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIK--NTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEE--EETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeE--EeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3444433334556667777778873 3333322 223455688889888 46778888887754
No 484
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=28.36 E-value=2e+02 Score=22.06 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=53.1
Q ss_pred cEEEEcCCCC----CCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc-cHHHHHHHHHHhCCcccccccccee
Q 022930 16 YSLLVLNITF----RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 16 ~~l~V~nL~~----~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~-~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
+.+++.+|+- .+.=.||+++|+..| ...|.-+.+ -|..+.+-. +.++....|+.+=...++-..-.++
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~------SGNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~v 79 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN------SGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSL 79 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT------TTEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe------cCCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4566676633 467899999999988 455655544 344433322 3233333333222222222111222
Q ss_pred hhhh--HHhhhccccccCcceeEEEEeccCcccchhHHHHHhhc
Q 022930 91 LKSS--LFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAK 132 (290)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 132 (290)
.... ......+...+......++|--+...++...+...+..
T Consensus 80 rs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~ 123 (183)
T 2hiy_A 80 LSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVES 123 (183)
T ss_dssp EEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHT
T ss_pred ecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhc
Confidence 2222 11222222211114566777777777777765554443
No 485
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.19 E-value=68 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.4
Q ss_pred CeEEEEEcccCCCCCcceEEEEEEcc
Q 022930 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (290)
Q Consensus 41 ~I~~v~i~~d~~tg~~~g~afV~F~~ 66 (290)
+|+.|.|..-...|+.++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 67778776555568999999999974
No 486
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=27.16 E-value=1.9e+02 Score=21.98 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc----cHHHHHHHHHHh
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~----~~~~a~~Al~~l 77 (290)
.+|.|.++.-..-...|...+...-.|..+.+... .+.+.|.|. +.++...+|..+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 56888888766666779999998888888877654 467889886 345566666654
No 487
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.51 E-value=85 Score=21.01 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEc-cHHHHHHHHHH
Q 022930 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (290)
Q Consensus 17 ~l~V~nL~~~~t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~-~~~~a~~Al~~ 76 (290)
+|.|. +.-..-...|+..+.....|..+.+... .+.+.|.|. +.++...+|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHH
Confidence 45555 5443334678888888877888877654 456778775 44555666654
No 488
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=26.29 E-value=1.3e+02 Score=20.61 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHhcC--------CCeEEEEE------cccCCCCCcce-EEEEEEccHHHHHHHHH
Q 022930 23 ITFRTTADDLFPLFEKY--------GKVVDVFI------PRDRRTGDSRG-FAFVRYKYADEAQKAVD 75 (290)
Q Consensus 23 L~~~~t~~~L~~~F~~~--------G~I~~v~i------~~d~~tg~~~g-~afV~F~~~~~a~~Al~ 75 (290)
|.+.++++++..+.++| |.|..+.- ... ......| |.++.|....++.+-|+
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~-I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYP-IAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEE-ETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccC-cCCCCEEEEEEEEEEeChHHHHHHH
Confidence 46677888776655443 45655442 111 1223344 67888887666655554
No 489
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=26.17 E-value=1.3e+02 Score=19.15 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=29.5
Q ss_pred CHHHHHHHHhcCC-CeEEEEEcccCCCCCcceEEE--EEEccHHHHHHHHHHhCC
Q 022930 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAF--VRYKYADEAQKAVDRLDG 79 (290)
Q Consensus 28 t~~~L~~~F~~~G-~I~~v~i~~d~~tg~~~g~af--V~F~~~~~a~~Al~~l~g 79 (290)
.-.+|..+|...| .|..+.+.... + ..... |+..+.+....++..|..
T Consensus 18 ~L~~I~~~la~~~inI~~i~~~~~~--~--~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 18 MTNQITGVISKFDTNIRTIVLNAKD--G--IFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp HHHHHHHHHTTSSSCEEEEEEEECS--S--EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCeEEEEEEEcC--C--EEEEEEEEEECCHHHHHHHHHHHhc
Confidence 3467888998877 67777765431 1 21222 345566777777777765
No 490
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.98 E-value=38 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.5
Q ss_pred EcCCCCCC-CHHHHHHHHhc
Q 022930 20 VLNITFRT-TADDLFPLFEK 38 (290)
Q Consensus 20 V~nL~~~~-t~~~L~~~F~~ 38 (290)
|=|||+.| ||.+|.++|.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 44898886 78999999875
No 491
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=25.91 E-value=61 Score=28.62 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=33.7
Q ss_pred EEEcCCCCC--CC-HHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 18 LLVLNITFR--TT-ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 18 l~V~nL~~~--~t-~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
-+||||..- .. ...+.++.++||.|..+.+. +.-+|.+.+++.+..++.
T Consensus 19 p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g---------~~~~v~v~~~~~i~~il~ 70 (476)
T 1po5_A 19 PVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLG---------SRPVVVLCGTDAIREALV 70 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CccccHHhccCCcHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 357887532 11 34567778899999877663 134677889999998874
No 492
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=25.38 E-value=1.3e+02 Score=28.92 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHh
Q 022930 15 TYSLLVLNITFRTTADDLFPLFE 37 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~ 37 (290)
..+|.|+-||+.++.+.|.+.+.
T Consensus 475 ~~~IvITElPy~v~~~~lie~I~ 497 (757)
T 3l4j_A 475 DNVLEITELPARTWTSTIKEYLL 497 (757)
T ss_dssp TTEEEEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEeCCCccCHHHHHHHHH
Confidence 46799999999999888877664
No 493
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.33 E-value=48 Score=22.96 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred EEEEeccCcccchhHHHHHhhccCC
Q 022930 111 FLIFFILGRVVDGREITVQFAKYGP 135 (290)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (290)
-++| ++|++..-.+|...|..||.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fgg 41 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGN 41 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCS
T ss_pred EEEE-eCChhhhhHHHHHHhhccCC
Confidence 3555 99999999999999999985
No 494
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.17 E-value=1.4e+02 Score=20.06 Aligned_cols=54 Identities=7% Similarity=0.053 Sum_probs=36.3
Q ss_pred EEEcCCCCCCCHHHHHHHHh-cCC----CeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 18 LLVLNITFRTTADDLFPLFE-KYG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~-~~G----~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
|.+-.+|..++-++|.+.+. -|+ +.-.++++-+ .| -+|.+.+.++...||..+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHHH
Confidence 66667888999998876553 333 3234444422 22 4788999999999998543
No 495
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=24.96 E-value=98 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHH
Q 022930 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (290)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 75 (290)
..|.++..+||.|..+.|. +.-+|.+.+++.+..++.
T Consensus 36 ~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 4567788999999988773 235788899999998876
No 496
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=24.93 E-value=1.2e+02 Score=21.18 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=29.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcC--------CCeEEEEE------cccCCCCCcce-EEEEEEcc-HHHHHHHHH
Q 022930 18 LLVLNITFRTTADDLFPLFEKY--------GKVVDVFI------PRDRRTGDSRG-FAFVRYKY-ADEAQKAVD 75 (290)
Q Consensus 18 l~V~nL~~~~t~~~L~~~F~~~--------G~I~~v~i------~~d~~tg~~~g-~afV~F~~-~~~a~~Al~ 75 (290)
+|| |.+.++++++..+.++| |.|..+.- ... ......| |.++.|.. ..++.+-|+
T Consensus 13 ~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~-I~K~~~G~Y~l~~f~a~~~~~i~ele 83 (110)
T 2j5a_A 13 VFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYP-IQKFNNARYFLVQFKTENPQLPNELD 83 (110)
T ss_dssp EEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSC-SSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred EEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccC-cCCCCEEEEEEEEEEeCCHHHHHHHH
Confidence 444 46777888776555433 45655532 221 2234455 67788887 444444443
No 497
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.57 E-value=2.1e+02 Score=21.05 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=40.6
Q ss_pred EEEEc-CCCCCC--CHHHHHHHHhcCCCeEEEEEcccCCCCCcceEEEEEEccHHHHHHHHHH
Q 022930 17 SLLVL-NITFRT--TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (290)
Q Consensus 17 ~l~V~-nL~~~~--t~~~L~~~F~~~G~I~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 76 (290)
+.||. .++... ..+++.+.+..+.+|..|..+ +|..-=+++|.+.+.++....+..
T Consensus 64 ~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 64 TVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp EEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHH
Confidence 44443 555543 246777888899999999885 565566889999999998888764
No 498
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=24.45 E-value=1e+02 Score=28.01 Aligned_cols=97 Identities=12% Similarity=0.243 Sum_probs=51.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhc---CCCeEEEEEcccCCCCCcceEEEE-EEccHHHHHHHHHHhCCcccccccccee
Q 022930 15 TYSLLVLNITFRTTADDLFPLFEK---YGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVDRLDGLFLNFNFVHEI 90 (290)
Q Consensus 15 ~~~l~V~nL~~~~t~~~L~~~F~~---~G~I~~v~i~~d~~tg~~~g~afV-~F~~~~~a~~Al~~l~g~~~~~~~~~~~ 90 (290)
..+|.|+-||+.++.+.|.+.+.. -+.|..|.=+.|- +.. .|+-|| ++.....++..+. +
T Consensus 226 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDe-sd~-~gvrivIelk~~~~~~~~l~---~----------- 289 (500)
T 3lpx_A 226 KETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDE-SDK-DGMRMVIEIKRGEVGEVVLN---N----------- 289 (500)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEEC-CCS-SCCCEEEEECTTSCHHHHHH---H-----------
T ss_pred CceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhc-CCC-CceEEEEEECCCCCHHHHHH---H-----------
Confidence 467999999999998877765432 3444433333442 222 345544 4544333333222 2
Q ss_pred hhhhHHhhhccccccCcceeEEEEeccCcccchhHHHHHhhc
Q 022930 91 LKSSLFLRKNLYLCIGFLFFFLIFFILGRVVDGREITVQFAK 132 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 132 (290)
.++...+....+ .++.+++.+.|..++-.+|...|-.
T Consensus 290 ----L~k~T~Lq~sf~-~Nm~al~~g~pk~~~l~eiL~~f~~ 326 (500)
T 3lpx_A 290 ----LYKLTQMQVSFG-LNMVALTNGQPKIFNIKEMLEAFVL 326 (500)
T ss_dssp ----HHHHSTTEEEEE-EECEEESSSSEEECCHHHHHHHHHH
T ss_pred ----HHHhcCCceeee-eeEEEEECCEeEECCHHHHHHHHHH
Confidence 112222222222 2345566677777776776666654
No 499
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=24.43 E-value=41 Score=23.21 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE
Q 022930 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (290)
Q Consensus 10 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~I~ 43 (290)
..+-.+++|+|.++.. .+.++|.++...+|-..
T Consensus 13 ~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 13 PKPLHKVVVCVSKKLS-KKQSELNGIAASLGADY 45 (107)
T ss_dssp -CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEE
T ss_pred cCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEE
Confidence 4566789999998865 67889999999998653
No 500
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=24.35 E-value=2.4e+02 Score=21.95 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=35.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC------CCe-EEEEEcccCCCCCcceEEEEEEccHHHHHHHHHHhC
Q 022930 16 YSLLVLNITFRTTADDLFPLFEKY------GKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (290)
Q Consensus 16 ~~l~V~nL~~~~t~~~L~~~F~~~------G~I-~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 78 (290)
.-+||. |....+++++..++..+ |-| ..+.++- -+-+.+.|.+-..|..|...|-
T Consensus 76 lMmFV~-v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id-------~dr~iFm~~DGs~a~E~KdFLl 137 (195)
T 2kgl_A 76 LMMFVT-VSGNPTEKETEEITSLWQGSLFNANYDVQRFIVG-------SDRAIFMLRDGSYAWEIKDFLV 137 (195)
T ss_dssp CEEEEE-SSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEET-------TEEEEEEESCSHHHHHHHHHHH
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEec-------CCeEEEEeCchHHHHHHHHHHh
Confidence 346775 55678888776665422 223 3344433 3478889999999998887543
Done!