Query 022931
Match_columns 290
No_of_seqs 170 out of 1284
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twl_A Formamidopyrimidine-DNA 100.0 5.5E-77 1.9E-81 555.5 26.5 269 1-272 1-275 (310)
2 3u6p_A Formamidopyrimidine-DNA 100.0 4.3E-76 1.5E-80 541.3 23.1 255 2-271 1-270 (273)
3 1k82_A Formamidopyrimidine-DNA 100.0 2E-75 7E-80 535.6 26.1 253 2-271 1-265 (268)
4 2xzf_A Formamidopyrimidine-DNA 100.0 1.1E-75 3.6E-80 538.4 21.3 253 2-271 1-267 (271)
5 1ee8_A MUTM (FPG) protein; bet 100.0 6.1E-73 2.1E-77 518.6 24.2 244 2-271 1-260 (266)
6 1k3x_A Endonuclease VIII; hydr 100.0 1.7E-70 5.9E-75 501.5 17.0 247 2-271 1-259 (262)
7 3vk8_A Probable formamidopyrim 100.0 5.6E-69 1.9E-73 498.6 16.0 244 1-271 1-284 (295)
8 1tdh_A NEI endonuclease VIII-l 100.0 1.8E-60 6.1E-65 450.7 9.9 231 1-257 1-275 (364)
9 3w0f_A Endonuclease 8-like 3; 100.0 4E-55 1.4E-59 402.2 16.7 244 3-271 2-278 (287)
10 3r8n_M 30S ribosomal protein S 97.2 0.00032 1.1E-08 55.7 5.0 49 168-219 11-59 (114)
11 2vqe_M 30S ribosomal protein S 97.0 0.00075 2.6E-08 54.4 4.8 51 168-221 12-62 (126)
12 3doa_A Fibrinogen binding prot 96.8 0.0092 3.1E-07 54.4 10.9 66 146-227 167-233 (288)
13 3iz6_M 40S ribosomal protein S 96.8 0.0014 4.8E-08 54.5 4.9 51 167-220 22-72 (152)
14 2xzm_M RPS18E; ribosome, trans 96.7 0.0017 5.7E-08 54.2 5.2 52 167-221 24-75 (155)
15 3j20_O 30S ribosomal protein S 96.6 0.0014 4.9E-08 54.2 4.1 51 168-221 18-68 (148)
16 3u5c_S 40S ribosomal protein S 96.6 0.0014 4.8E-08 54.1 3.6 51 167-220 24-74 (146)
17 3bbn_M Ribosomal protein S13; 94.1 0.018 6E-07 47.3 1.7 48 167-218 56-103 (145)
18 1mu5_A Type II DNA topoisomera 89.2 1.1 3.8E-05 43.3 8.4 66 155-222 237-304 (471)
19 1qyr_A KSGA, high level kasuga 86.9 0.72 2.5E-05 40.7 5.0 52 161-221 199-250 (252)
20 3tqs_A Ribosomal RNA small sub 82.2 1.5 5.2E-05 38.7 5.0 48 163-219 207-254 (255)
21 3uzu_A Ribosomal RNA small sub 81.3 1.5 5.3E-05 39.2 4.8 50 163-221 225-274 (279)
22 3fut_A Dimethyladenosine trans 80.8 1.5 5.2E-05 39.1 4.5 54 163-220 215-268 (271)
23 2riq_A Poly [ADP-ribose] polym 80.5 0.92 3.1E-05 37.7 2.7 28 244-274 74-101 (160)
24 3gru_A Dimethyladenosine trans 80.4 1.8 6E-05 39.2 4.8 63 162-224 221-290 (295)
25 1l8d_A DNA double-strand break 76.0 0.6 2E-05 35.9 0.2 16 246-261 44-59 (112)
26 2zbk_B Type 2 DNA topoisomeras 73.7 18 0.0006 35.5 10.1 66 155-222 236-303 (530)
27 1qam_A ERMC' methyltransferase 69.1 3.2 0.00011 36.0 3.3 44 163-221 198-241 (244)
28 2jrp_A Putative cytoplasmic pr 67.8 1.8 6.1E-05 31.9 1.2 22 251-272 33-57 (81)
29 3ftd_A Dimethyladenosine trans 65.4 4.4 0.00015 35.4 3.5 45 163-220 201-245 (249)
30 2jne_A Hypothetical protein YF 64.9 2.8 9.7E-05 31.9 1.8 22 252-273 64-88 (101)
31 3j20_Y 30S ribosomal protein S 55.3 6.8 0.00023 26.0 2.2 31 247-277 17-49 (50)
32 3r8s_0 50S ribosomal protein L 54.2 4 0.00014 27.8 0.9 21 250-274 28-48 (56)
33 2owo_A DNA ligase; protein-DNA 52.3 5.8 0.0002 40.1 2.1 22 251-272 407-429 (671)
34 1dgs_A DNA ligase; AMP complex 51.7 5.2 0.00018 40.4 1.7 22 251-273 405-426 (667)
35 3sgi_A DNA ligase; HET: DNA AM 46.7 4.1 0.00014 40.8 0.0 21 252-272 418-440 (615)
36 1wd2_A Ariadne-1 protein homol 46.1 7.2 0.00025 26.8 1.2 15 248-262 5-19 (60)
37 2gqf_A Hypothetical protein HI 46.1 38 0.0013 31.2 6.6 62 153-220 263-326 (401)
38 2k4x_A 30S ribosomal protein S 45.6 12 0.00042 25.2 2.3 33 247-279 16-50 (55)
39 2lcq_A Putative toxin VAPC6; P 44.8 8.8 0.0003 31.2 1.7 14 251-264 150-163 (165)
40 2kpi_A Uncharacterized protein 44.5 20 0.00067 24.2 3.2 30 250-280 11-45 (56)
41 4glx_A DNA ligase; inhibitor, 44.4 7.8 0.00027 38.5 1.6 22 251-272 407-429 (586)
42 3v76_A Flavoprotein; structura 37.9 49 0.0017 30.8 6.0 61 154-220 283-345 (417)
43 3j21_g 50S ribosomal protein L 36.4 8.7 0.0003 25.7 0.3 21 247-270 12-32 (51)
44 4e0i_A Mitochondrial FAD-linke 33.9 13 0.00045 31.4 1.2 15 242-256 20-34 (189)
45 2h1r_A Dimethyladenosine trans 32.7 35 0.0012 30.2 3.9 30 190-220 261-290 (299)
46 2jny_A Uncharacterized BCR; st 32.6 31 0.0011 24.2 2.8 31 250-280 11-45 (67)
47 1pft_A TFIIB, PFTFIIBN; N-term 32.3 27 0.00091 22.5 2.3 23 250-272 6-30 (50)
48 1c8c_A DNA-binding protein 7A; 32.1 29 0.001 23.3 2.4 33 47-85 15-47 (64)
49 2i5o_A DNA polymerase ETA; zin 32.1 13 0.00044 23.4 0.6 12 250-261 10-21 (39)
50 2js4_A UPF0434 protein BB2007; 31.2 40 0.0014 23.8 3.2 31 250-280 9-43 (70)
51 2i0z_A NAD(FAD)-utilizing dehy 31.2 91 0.0031 28.8 6.7 62 154-220 301-367 (447)
52 3pme_A Type C neurotoxin; stru 30.0 17 0.0006 34.0 1.3 54 167-220 153-218 (420)
53 2jr6_A UPF0434 protein NMA0874 28.9 44 0.0015 23.4 3.0 31 250-280 9-43 (68)
54 3u50_C Telomerase-associated p 28.3 25 0.00086 29.2 2.0 20 252-271 45-64 (172)
55 3v2d_5 50S ribosomal protein L 27.6 17 0.00057 25.1 0.6 21 250-274 31-52 (60)
56 2hf1_A Tetraacyldisaccharide-1 27.5 47 0.0016 23.2 3.0 31 250-280 9-43 (68)
57 1yub_A Ermam, rRNA methyltrans 26.6 24 0.00082 30.0 1.6 31 191-221 210-240 (245)
58 1zq9_A Probable dimethyladenos 26.0 43 0.0015 29.3 3.2 30 190-220 249-278 (285)
59 1zfo_A LAsp-1; LIM domain, zin 25.8 23 0.00078 20.7 0.9 11 250-260 4-14 (31)
60 2pk7_A Uncharacterized protein 24.6 53 0.0018 23.1 2.8 31 250-280 9-43 (69)
61 1pcf_A P15, transcriptional co 24.5 24 0.00081 24.8 0.9 29 197-225 34-62 (66)
62 1zbd_B Rabphilin-3A; G protein 24.1 34 0.0012 27.2 1.9 67 200-271 3-77 (134)
63 1dl0_A J-atracotoxin-HV1C; neu 23.1 39 0.0013 20.4 1.6 20 252-271 14-34 (37)
64 1wvl_A DNA-binding proteins 7A 22.4 54 0.0018 23.0 2.4 32 47-85 15-46 (80)
65 2vu9_A Botulinum neurotoxin A 22.1 33 0.0011 32.5 1.6 54 167-220 174-239 (444)
66 2xiw_A DNA-binding protein 7D; 21.9 56 0.0019 22.9 2.4 33 46-85 25-57 (79)
No 1
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=100.00 E-value=5.5e-77 Score=555.52 Aligned_cols=269 Identities=71% Similarity=1.077 Sum_probs=229.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceE
Q 022931 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (290)
Q Consensus 1 MPELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG 80 (290)
||||||||++++.|++.+.|++|++|++...+++++++++++|.+.|.|++|++|.||||||+|.|+++.+|++||||||
T Consensus 1 MPELPEVetvrr~L~~~l~G~~I~~v~v~~~~~~~~~~~~~~f~~~L~G~~I~~v~RrGKyL~~~l~~~~~L~~HLgMsG 80 (310)
T 3twl_A 1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSFQFGMAG 80 (310)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCBEEEEEECCCTTTBCSSCHHHHHHHHTTCBEEEEEEETTEEEEEESSSCEEEEECTTTC
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEEEEcCCcceeccCChHHHHHHcCCCEEEEEEeeeeEEEEEeCCCCEEEEEcCCce
Confidence 99999999999999999999999999998656666656788999999999999999999999999998779999999999
Q ss_pred EEEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCCCCCCCcccCCCCCCCCCCCHHHH
Q 022931 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEF 160 (290)
Q Consensus 81 ~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~~~~~~l~~LGpDpL~~~f~~~~f 160 (290)
+|++.+.+.+.|......+.+.||++|.|++|.|+||..|.|+|+|+||+++++++.+..+.+++||||||+++|+.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~kh~~v~l~l~~g~~L~f~D~RrfG~~~l~~~~~~~~~l~~LGPDpL~~~f~~~~~ 160 (310)
T 3twl_A 81 AIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEF 160 (310)
T ss_dssp EEEEC-----------------CCCTTEEEEEEETTSCEEEEECSSSCCEEEEESCGGGSTTGGGCCCBTTTSCCCHHHH
T ss_pred EEEEecCCcccccccccccccCCCCceeEEEEEECCCCEEEEEecCcCcEEEEecchhhCchhhhcCCCCCCCcCCHHHH
Confidence 99997654444433333334467889999999999999999999999999999987666778999999999999999999
Q ss_pred HHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-HhccccccccccCc
Q 022931 161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGVSLQFYKCYFAK 239 (290)
Q Consensus 161 ~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~~~~~~~~~~~~ 239 (290)
.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+.+.+ .+.|+
T Consensus 161 ~~~l~~~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~ai~~gg~---~g~f~ 237 (310)
T 3twl_A 161 AESLAKKKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDAD---SSQFP 237 (310)
T ss_dssp HHHHHTCCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTTC---GGGSC
T ss_pred HHHHhCCcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCC---CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 998432 24577
Q ss_pred cceeecCCCCCCcc--ccccceeee---ccceeeecce
Q 022931 240 PYVHKKHRENKICR--LFKVRLKLM---LTAAAFLLNG 272 (290)
Q Consensus 240 ~~~~vy~R~g~~C~--~Cg~~i~~~---~~~~~~~~~~ 272 (290)
..+.||+|+|+||+ +||++|.++ ||+|+||-+=
T Consensus 238 ~~~~vygR~g~pC~~~~CG~~I~~~~~~gR~t~~CP~C 275 (310)
T 3twl_A 238 SNWIFHNREKKPGKAFVDGKKIDFITAGGRTTAYVPEL 275 (310)
T ss_dssp TTCGGGGTTSCTTSCEETTEECEECCE------ECTTT
T ss_pred ccEEEeCcCCCCCCCCCCCCeEEEEEECCcccEECCCC
Confidence 78899999999999 999998854 9999999753
No 2
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=100.00 E-value=4.3e-76 Score=541.27 Aligned_cols=255 Identities=25% Similarity=0.327 Sum_probs=225.6
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccC-ChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceE
Q 022931 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGV-SASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (290)
Q Consensus 2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~-~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG 80 (290)
|||||||++++.|++.+.|++|++|++. .+++++.+ ++++|.+.|.|++|++|.||||||+++|++ .+|++||||+|
T Consensus 1 PELPEVetv~r~L~~~l~G~~I~~v~v~-~~~~~~~~~~~~~~~~~L~G~~i~~v~rrGK~L~~~l~~-~~L~~HLgM~G 78 (273)
T 3u6p_A 1 PQLPEVETIRRTLLPLIVGKTIEDVRIF-WPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR-DALISHLRMEG 78 (273)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEES-CGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSS-EEEEEECTTTC
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEc-CcccccCCCChHHHHHHhCCCEEEEEEeeeeEEEEEECC-CeEEEeCCcEE
Confidence 9999999999999999999999999997 56676644 588999999999999999999999999987 68999999999
Q ss_pred EEEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCC--CCCCCcccCCCCCCCCCCCHH
Q 022931 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (290)
Q Consensus 81 ~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~--~~~~~l~~LGpDpL~~~f~~~ 158 (290)
+|++.+. +.+|++|.|++|+|+||..|.|+|+|+||.++++++. ...+.+++||||||+++||.+
T Consensus 79 ~~~~~~~-------------~~~~~~h~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~ 145 (273)
T 3u6p_A 79 RYAVASA-------------LEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPA 145 (273)
T ss_dssp EEEEEET-------------TSCCCTTEEEEEEETTSEEEEEECTTCCCEEEEEEHHHHTTSTTTTTCCCCTTSTTSCHH
T ss_pred EEEEecC-------------CCCCCcceEEEEEECCCCEEEEEecCcCCEEEEEcchhhccchhhhhcCCCCCcccCCHH
Confidence 9999753 2356789999999999999999999999999999743 356789999999999999999
Q ss_pred HHHHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-cccc----
Q 022931 159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQF---- 232 (290)
Q Consensus 159 ~f~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~---- 232 (290)
+|.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+. ++++
T Consensus 146 ~~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~ 225 (273)
T 3u6p_A 146 VLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYV 225 (273)
T ss_dssp HHHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHhcCcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 998 3332
Q ss_pred ---cccccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022931 233 ---YKCYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN 271 (290)
Q Consensus 233 ---~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~ 271 (290)
+..+.|+.+++||+|+|+|||+||++|.++ ||+|+||-+
T Consensus 226 ~~~g~~g~~~~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 270 (273)
T 3u6p_A 226 NTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPR 270 (273)
T ss_dssp -----------CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred cCCCCcCcccceEEEeCCCcCCCCCCCCeEEEEEECCCCeEECCC
Confidence 334578889999999999999999999854 999999964
No 3
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=2e-75 Score=535.59 Aligned_cols=253 Identities=27% Similarity=0.412 Sum_probs=227.3
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEE
Q 022931 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (290)
Q Consensus 2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~ 81 (290)
|||||||++++.|++.+.|++|++|++. .++ ++.+.+++ .+.|.|++|++|.||||||+++|+++ +|++||||+|+
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~-~~~-~~~~~~~~-~~~L~G~~i~~v~rrGK~L~~~l~~~-~l~~HLgM~G~ 76 (268)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVR-NGR-LRWPVSEE-IYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGS 76 (268)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEES-CCB-SSSBCCHH-HHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCE
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEc-CCC-ccCCCchh-hhhcCCCEEEEEEEEccEEEEEeCCC-EEEEECCCeEE
Confidence 9999999999999999999999999997 455 33334455 67799999999999999999999986 89999999999
Q ss_pred EEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCCCCCCCcccCCCCCCCCCCCHHHHH
Q 022931 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFT 161 (290)
Q Consensus 82 l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~~~~~~l~~LGpDpL~~~f~~~~f~ 161 (290)
|++.+. +++++||+|++|.|+||..|.|+|+|+||.++++++.+..+.+++||||||+++||.++|.
T Consensus 77 ~~~~~~-------------~~~~~kh~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~l~~LGpdpL~~~f~~~~~~ 143 (268)
T 1k82_A 77 LRILPE-------------ELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLH 143 (268)
T ss_dssp EEEESS-------------SCCCCTTCCEEEEETTSCEEEEECSSCCCEEEEESCSSSSTTTTTCCCCTTSTTSCHHHHH
T ss_pred EEEecC-------------CCCCCCceEEEEEECCCCEEEEEecCCCcEEEEECchhhhhHhhcCCCCCCCCcCCHHHHH
Confidence 999643 2355789999999999999999999999999988545566789999999999999999999
Q ss_pred HHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-cccc-------
Q 022931 162 DSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQF------- 232 (290)
Q Consensus 162 ~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~------- 232 (290)
+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+. ++++
T Consensus 144 ~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~~~ 223 (268)
T 1k82_A 144 QKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSD 223 (268)
T ss_dssp HHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999 4333
Q ss_pred cccccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022931 233 YKCYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN 271 (290)
Q Consensus 233 ~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~ 271 (290)
+..+.|+..++||+|+|+||++||++|.++ ||+|+||-+
T Consensus 224 g~~G~f~~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 265 (268)
T 1k82_A 224 GKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQ 265 (268)
T ss_dssp --CCSCGGGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCcccceEEEcccCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 334578899999999999999999998855 999999964
No 4
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=100.00 E-value=1.1e-75 Score=538.36 Aligned_cols=253 Identities=24% Similarity=0.342 Sum_probs=226.7
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceecc-CChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceE
Q 022931 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDG-VSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (290)
Q Consensus 2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~-~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG 80 (290)
|||||||++++.|++.+.|++|++|++. .++ ++. +. .+|.+.|.|++|++|.||||||+++|+++.+|++||||+|
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~-~~~-l~~~~~-~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G 77 (271)
T 2xzf_A 1 PELPEVETVRRELEKRIVGQKIISIEAT-YPR-MVLTGF-EQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEG 77 (271)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBCCEEEES-CGG-GBTTCH-HHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTC
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEc-CCc-cccCCc-HHHHHhcCCCEEEEEEeEccEEEEEECCCCEEEEeCCCeE
Confidence 9999999999999999999999999997 456 433 33 6788889999999999999999999998768999999999
Q ss_pred EEEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCC--CCCCCcccCCCCCCCCCCCHH
Q 022931 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (290)
Q Consensus 81 ~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~--~~~~~l~~LGpDpL~~~f~~~ 158 (290)
+|++.+. +.+++||+|++|.|+||. |.|+|+|+||++++++.. +.++.+++||||||+++||.+
T Consensus 78 ~~~~~~~-------------~~~~~kh~~v~l~~~~g~-l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~ 143 (271)
T 2xzf_A 78 KYRLATL-------------DAPREKHDHLTMKFADGQ-LIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEK 143 (271)
T ss_dssp EEEEECT-------------TCCCCTTEEEEEECSSCE-EEEECTTCCCEEEEEEGGGHHHHHHHTTCCCCSSTTTCCHH
T ss_pred EEEEecC-------------CCCCCCceEEEEEEcCCe-EEEEecCcCCEEEEEcCcchhhhhHHhcCCCCCCCCcCCHH
Confidence 9998643 235578999999999998 999999999999998632 334578999999999999999
Q ss_pred HHHHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-cccc----
Q 022931 159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQF---- 232 (290)
Q Consensus 159 ~f~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~---- 232 (290)
+|.+++++++++||++||||++||||||||||||||+|||||.+++++||++|+++|+++|++||++ |+. ++++
T Consensus 144 ~~~~~l~~~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~ 223 (271)
T 2xzf_A 144 LFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYS 223 (271)
T ss_dssp HHHHHHHTCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHhcCCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999 3332
Q ss_pred --cccccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022931 233 --YKCYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN 271 (290)
Q Consensus 233 --~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~ 271 (290)
+..+.|+.+++||+|+|+||++||++|.++ ||+|+||-+
T Consensus 224 ~~g~~G~f~~~~~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~ 267 (271)
T 2xzf_A 224 ALGSTGKMQNELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPV 267 (271)
T ss_dssp CTTTTCCGGGGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCcccceEEEccCCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 234578889999999999999999998855 999999964
No 5
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=6.1e-73 Score=518.57 Aligned_cols=244 Identities=27% Similarity=0.397 Sum_probs=220.4
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEE
Q 022931 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (290)
Q Consensus 2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~ 81 (290)
|||||||++++.|++.+.|++|++|++. .+++++. + +.|.|++|++|.||||||+++|+++.+|++||||+|+
T Consensus 1 PELPEvetv~r~L~~~~~G~~I~~v~v~-~~~~l~~--~----~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G~ 73 (266)
T 1ee8_A 1 PELPEVETTRRRLRPLVLGQTLRQVVHR-DPARYRN--T----ALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGG 73 (266)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECS-CTTTEES--G----GGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCE
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEe-CCccccC--h----hhcCCcEEEeeeeEeeEEEEEeCCCCEEEEECCCeEE
Confidence 9999999999999999999999999997 4553432 1 5699999999999999999999987689999999999
Q ss_pred EEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEecCC--CCCCCcccCCCCCCCCCCCHHH
Q 022931 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVDE 159 (290)
Q Consensus 82 l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~--~~~~~l~~LGpDpL~~~f~~~~ 159 (290)
|++.+ +||.|++|.|+ |..|.|+|+|+||.+++++.. +..+.+++||||||+++||.++
T Consensus 74 ~~~~~------------------~kh~~v~l~~~-g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~~ 134 (266)
T 1ee8_A 74 FRLEP------------------TPHTRAALVLE-GRTLYFHDPRRFGRLFGVRRGDYREIPLLLRLGPEPLSEAFAFPG 134 (266)
T ss_dssp EESSC------------------CTTEEEEEEES-SCEEEEECTTCCCEEEEEETTCCTTCTHHHHCCCCTTSTTCCHHH
T ss_pred EEEec------------------CCceEEEEEEc-CcEEEEEecCcCCEEEEEcCchhhhhhHHhcCCCCCCCCcCCHHH
Confidence 98731 47999999998 888999999999999998632 4567899999999999999999
Q ss_pred HHHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-cccc-----
Q 022931 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQF----- 232 (290)
Q Consensus 160 f~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~----- 232 (290)
|.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+. ++++
T Consensus 135 ~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~ 214 (266)
T 1ee8_A 135 FFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEAVELGGSTLSDQSY 214 (266)
T ss_dssp HHHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred HHHHHhcCCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999 4333
Q ss_pred ----cccccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022931 233 ----YKCYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN 271 (290)
Q Consensus 233 ----~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~ 271 (290)
+..+.|+..++||+|+|+||++||++|.++ ||+|+||-+
T Consensus 215 ~~~~g~~G~f~~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 260 (266)
T 1ee8_A 215 RQPDGLPGGFQTRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPT 260 (266)
T ss_dssp CCTTSCCCSCGGGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTT
T ss_pred ccCCCCCCcccceEEEcccCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 233468899999999999999999998865 999999964
No 6
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=100.00 E-value=1.7e-70 Score=501.51 Aligned_cols=247 Identities=18% Similarity=0.245 Sum_probs=212.4
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEE
Q 022931 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (290)
Q Consensus 2 PELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~ 81 (290)
|||||||++++.|++.+.|++|++|++. .+++ .+|.+.|.|++|++|.||||||+++|+++.+|++||||+|+
T Consensus 1 PElPEVe~~~r~L~~~~~G~~I~~v~~~-~~~~------~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~l~~HLgM~G~ 73 (262)
T 1k3x_A 1 PEGPEIRRAADNLEAAIKGKPLTDVWFA-FPQL------KTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGV 73 (262)
T ss_dssp CCHHHHHHHHHHHHHHHBTCCCSEEEES-SGGG------TTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCE
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEEEC-Ccch------HHHHHhcCCcEEEEEEEEeeEEEEEeCCCCEEEEECCcceE
Confidence 9999999999999999999999999986 3332 35777899999999999999999999987789999999999
Q ss_pred EEEeecceeccccccccCCCCCCCC-eeEEEEEEcCCceEEEecCCcccEEEEecC--CCCCCCcccCCCCCCCCCCCHH
Q 022931 82 IYIKGVAVTQYKRSAVKDTDEWPSK-YSKFFVELDDGLELSFTDKRRFAKVRLLND--PTSVPPISELGPDALLEPMTVD 158 (290)
Q Consensus 82 l~~~~~~~~~y~~~~~~~~~~~p~k-~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~--~~~~~~l~~LGpDpL~~~f~~~ 158 (290)
|++.+. .+.++++ |.|++|.++||..|.|+|+| || +++. .+.++.+++||||||+++||.+
T Consensus 74 ~~~~~~------------~~~~~~~~~~~~~l~~~~g~~l~~~d~r-~~---l~~~~~~~~~~~l~~lGpdpL~~~f~~~ 137 (262)
T 1k3x_A 74 WRVVDT------------GEEPQTTRVLRVKLQTADKTILLYSASD-IE---MLRPEQLTTHPFLQRVGPDVLDPNLTPE 137 (262)
T ss_dssp EEEEET------------TCCCCCSSCEEEEEECSSEEEEEESCCE-EE---EECTTHHHHSHHHHHCCCBTTCTTCCHH
T ss_pred EEEecC------------CCCCCCCCeEEEEEEeCCCeEEEEECCE-EE---EEeCcccccchHHhcCCCCCCCCcCCHH
Confidence 998642 1223344 88999999999899999997 66 4432 1234678999999999999999
Q ss_pred HHHHHHcCC---CCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc-ccccc
Q 022931 159 EFTDSLSKK---KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV-SLQFY 233 (290)
Q Consensus 159 ~f~~~l~~~---~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~-~~~~~ 233 (290)
+|.++++++ +++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|+.||++ |+. ++++.
T Consensus 138 ~~~~~l~~~~~~~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vl~~ai~~gGtt~~ 217 (262)
T 1k3x_A 138 VVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE 217 (262)
T ss_dssp HHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCcccccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999988 5999999999999999999999999999999999999999999999999999999999 998 44443
Q ss_pred c-cccCccceeecCCCCCCccccccceeee---ccceeeecc
Q 022931 234 K-CYFAKPYVHKKHRENKICRLFKVRLKLM---LTAAAFLLN 271 (290)
Q Consensus 234 ~-~~~~~~~~~vy~R~g~~C~~Cg~~i~~~---~~~~~~~~~ 271 (290)
+ .+.++++++||+|+|+||++||++|.++ ||+|+||-+
T Consensus 218 ~~~~~~~~~l~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 259 (262)
T 1k3x_A 218 NKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPG 259 (262)
T ss_dssp -----CCCCCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCcceeEEEcCCCcCCCCCCCCEeEEEEECCCCeEECCC
Confidence 2 4566777899999999999999998865 999999964
No 7
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=100.00 E-value=5.6e-69 Score=498.63 Aligned_cols=244 Identities=24% Similarity=0.317 Sum_probs=215.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEEEEecCCCceec-cC-ChhhHHhhhcCCEEEEEEeeeeEEEEEeC-C-----CCce
Q 022931 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVID-GV-SASDFEASVLGKAILSAHRKGKNLWLRLD-S-----PPFP 72 (290)
Q Consensus 1 MPELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~-~~-~~~~f~~~L~G~~i~~v~RrGK~L~~~l~-~-----~~~L 72 (290)
||||||||++++.|++.+.|++|++|++. .+++++ .+ ++++|.+.| |++|++|.||||||++.|+ + +.+|
T Consensus 1 MPElPEVe~~~r~L~~~l~G~~I~~v~v~-~~~~l~~~~~~~~~f~~~L-G~~i~~v~rrGK~L~~~l~~~~~~~~~~~L 78 (295)
T 3vk8_A 1 MPQGPEVALTADILEKYFKGKTLEYIDFI-SGRYSKSEPEGYDDFIANL-PLKVSNVDTKGKFLWFELFDPNDKSNKWYI 78 (295)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCEEEEEEEC-SSHHHHSCCBTHHHHHTTC-SEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEEEc-CCCceecCCCCHHHHHHhc-CCEEEEEEEeeeEEEEEecCCCcCCCCCEE
Confidence 99999999999999999999999999997 466665 33 378999999 9999999999999999995 3 4589
Q ss_pred EEecCceEEEEEeecceeccccccccCCCCCCCCeeEEEEEEcCCceEEEecCCcccEEEEec-CCCCCCCcccCCCCCC
Q 022931 73 SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLN-DPTSVPPISELGPDAL 151 (290)
Q Consensus 73 ~~HLgMtG~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~-~~~~~~~l~~LGpDpL 151 (290)
++||||+|+|++.+ ++|.|++|.|+|+..|.|+|+|+||++++++ +.+..+.+++||||||
T Consensus 79 ~~HLgM~G~~~~~~------------------~~h~~v~l~l~~g~~l~f~D~R~fG~~~l~~~~~~~~~~l~~LGPDpL 140 (295)
T 3vk8_A 79 WNTFGLTGMWSLFE------------------AKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFL 140 (295)
T ss_dssp EEECTTTEEEESSC------------------CTTEEEEEEEGGGCEEEEEETTCCCEEEEESCHHHHHHHHTTSCCBTT
T ss_pred EEecCceEEEEEcC------------------CCeeEEEEEECCCCEEEEEecCcCCEEEEeCCchhhchhhhhcCCCCC
Confidence 99999999998741 4799999999999999999999999999997 2234456899999999
Q ss_pred -CCCCCHHHHHHHHcCCCCchHHHhhcccc-cccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHHHHH-Hhc
Q 022931 152 -LEPMTVDEFTDSLSKKKITIKALLLDQSY-ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVREA-LGV 228 (290)
Q Consensus 152 -~~~f~~~~f~~~l~~~~~~IK~~LLDQ~~-iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~-i~~ 228 (290)
+++|+.++ +++++++||++||||++ ||||||||+|||||+|||||.+++++||++|+++|+++|++||++ |+.
T Consensus 141 ~~~~f~~~~----l~~~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~ 216 (295)
T 3vk8_A 141 KNDDIDISK----IKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDS 216 (295)
T ss_dssp TCSCCCGGG----GGGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHH----HhccCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 77899999999999999 999999999999999999999999999999999999999999999 988
Q ss_pred cc------cccccccC--------------ccceeecCCCCCCccccccceee--------eccceeeecc
Q 022931 229 SL------QFYKCYFA--------------KPYVHKKHRENKICRLFKVRLKL--------MLTAAAFLLN 271 (290)
Q Consensus 229 ~~------~~~~~~~~--------------~~~~~vy~R~g~~C~~Cg~~i~~--------~~~~~~~~~~ 271 (290)
+. ..+..+.| +..++||+|+|+|| |++|.+ .+|+|+||-+
T Consensus 217 gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~g~PC---G~~I~~~~~~~~~~~~R~t~~CP~ 284 (295)
T 3vk8_A 217 NHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPN---GNKVIADKIIGSGKNKRTTYWAPA 284 (295)
T ss_dssp SCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCSBCTT---SCBCEEEECSCCTTCCCEEEECTT
T ss_pred CCCcceecCCCCcccccccccccccccccccceEEEeCCCCCCC---CCcEEEEEecCCCCCCCccEECCC
Confidence 32 12223456 77899999999999 888874 6899999965
No 8
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=1.8e-60 Score=450.72 Aligned_cols=231 Identities=24% Similarity=0.291 Sum_probs=190.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEEEEecCCCceeccCChhhHHhhhcCCEEEEEEeeeeEEEEEeCC--C-------Cc
Q 022931 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDS--P-------PF 71 (290)
Q Consensus 1 MPELPEVe~~~~~L~~~~~Gk~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~L~~~l~~--~-------~~ 71 (290)
||||||||++++.|++.+.|++|..+... +.+++.+.+ +|. +.|++|.. .||||||+++|++ + .+
T Consensus 1 MPELPEVEtvrr~L~~~l~G~~I~~~v~~--~~vlr~p~~-~f~--~~G~~I~~-~RRGKyLll~l~~~~g~~~~~~~~~ 74 (364)
T 1tdh_A 1 MPEGPELHLASQFVNEACRALVFGGCVEK--SSVSRNPEV-PFE--SSAYRISA-SARGKELRLILSPLPGAQPQQEPLA 74 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCCEEEECEE--CSSCCSCCC-CCE--EEEEEEEE-EEETTEEEEEEEECTTCSSCCCCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEECc--ccccccCCc-chh--cCCCEEEE-EEEeeEEEEEccCccccccccCCce
Confidence 99999999999999999999999996432 344433333 563 48999966 8999999999985 1 37
Q ss_pred eEEecCceEEEEEeecceeccccccccCCCCCCCCeeEEEEEEcCC---ceEEEecCCcccEEEEecCCCCCCCcccCCC
Q 022931 72 PSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG---LELSFTDKRRFAKVRLLNDPTSVPPISELGP 148 (290)
Q Consensus 72 L~~HLgMtG~l~~~~~~~~~y~~~~~~~~~~~p~k~~~l~l~l~~g---~~L~f~D~R~fG~i~l~~~~~~~~~l~~LGp 148 (290)
|++||||+|+|++.+. .++++|+|++|.|+|+ ..|+|+|+|+||.+.+.++ .+++|||
T Consensus 75 Lv~HLGMsG~l~v~~~--------------~~~~kh~hv~l~l~dgg~~~~L~f~D~RrFG~~~~~~~-----~~~~LGP 135 (364)
T 1tdh_A 75 LVFRFGMSGSFQLVPR--------------EELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGK-----WQPGRGP 135 (364)
T ss_dssp EEEECTTTCEEEEEEG--------------GGCCTTEEEEEEBCSSSSCEEEEEECTTCCCEEEESSC-----CCTTCCC
T ss_pred EEEeCCceEEEEEecC--------------CCCCCceEEEEEECCCCcEEEEEEecCcEEEEEEecch-----hHhhcCC
Confidence 9999999999999653 1346899999999986 7899999999999888642 4689999
Q ss_pred CCCCC--CCCHHHHHHHHcC--CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHH--------------
Q 022931 149 DALLE--PMTVDEFTDSLSK--KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKE-------------- 210 (290)
Q Consensus 149 DpL~~--~f~~~~f~~~l~~--~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~-------------- 210 (290)
|||++ .|+.+ +.+++.+ ++++||++||||++||||||||+|||||+|||||.+++++||++
T Consensus 136 dPL~~~~~f~~~-~~~~l~~~~~~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~~~~~~~~~~~~~~~ 214 (364)
T 1tdh_A 136 CVLQEYQQFRES-VLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQ 214 (364)
T ss_dssp CTTTCHHHHHHH-HHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGGC-----CCSCHHH
T ss_pred CCCCCHHHHHHH-HHHHhhcccccccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHHHhccccccccchhh
Confidence 99983 23222 3344554 48999999999999999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHHH-Hhc-cccccc----cc--cCccceeecCCCCCCcccccc
Q 022931 211 ------SCATLLKCIKEVREA-LGV-SLQFYK----CY--FAKPYVHKKHRENKICRLFKV 257 (290)
Q Consensus 211 ------e~~~L~~~i~~vL~~-i~~-~~~~~~----~~--~~~~~~~vy~R~g~~C~~Cg~ 257 (290)
|+++|+++|+.||++ |+. ++++.. .+ .|+..++||+|+|+||++|+.
T Consensus 215 k~~~~~e~~~L~~ai~~VL~~AI~~GGt~~~~~~G~~G~g~fq~~l~VYgR~G~pc~~~~~ 275 (364)
T 1tdh_A 215 KIRTKLQNPDLLELCHSVPKEVVQLGGRGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRH 275 (364)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHCSSTTCTTCEEEECTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcChhhhhhheeecCcCCCcCcccCC
Confidence 999999999999999 999 443322 22 588889999999999999984
No 9
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=100.00 E-value=4e-55 Score=402.18 Aligned_cols=244 Identities=18% Similarity=0.228 Sum_probs=196.3
Q ss_pred ChHHHHHHHHHHHHHc-CCCeEEEEEecCCCce--------------------e-ccCChhhHHhhhcCCEEEEEEeeee
Q 022931 3 ELPEVEAARRAIEEHC-IGKKIVKSIIADDNKV--------------------I-DGVSASDFEASVLGKAILSAHRKGK 60 (290)
Q Consensus 3 ELPEVe~~~~~L~~~~-~Gk~I~~v~~~~~~~~--------------------~-~~~~~~~f~~~L~G~~i~~v~RrGK 60 (290)
|+|....-.+.++..+ .|+.|++|...-.... . .+.+..+|.+.|.|++|++|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~G~~I~~v~RRGK 81 (287)
T 3w0f_A 2 EGPGCTLNGEKIRARVLPGQAVTGVRGTALQSLLGPAMSPAASLADVATSAAPMNAKDSGWKLLRLFNGYVYSGVETLGK 81 (287)
T ss_dssp CHHHHHHHHHHHHHHSCTTCBEEEEECGGGGGCC-----------------------CCSCGGGGGTTTCBEEEEEEETT
T ss_pred CCCccccchHHHHhhhcCCcEEEeccccccCCCCCCCCCccccccccccccccccCCccHHHHHHHCCCCEEEEEEeeee
Confidence 8888888888887544 7999999976320000 0 1123358999999999999999999
Q ss_pred EEEEEeCCCCceEEecCceEEEEEeecceeccccccccCCCCCC-CCeeEEEEEEcCCceEEEecCCcccEEEEecCCC-
Q 022931 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWP-SKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPT- 138 (290)
Q Consensus 61 ~L~~~l~~~~~L~~HLgMtG~l~~~~~~~~~y~~~~~~~~~~~p-~k~~~l~l~l~~g~~L~f~D~R~fG~i~l~~~~~- 138 (290)
||+|+|++ .+|++||||+|+|++.++. ..++ .+|.|++|.|+|| .|.|+|+| +++++..+
T Consensus 82 yLll~l~~-~~Lv~HLGMsG~l~v~~~~------------~~~~~~kh~~v~l~l~dg-~l~f~D~r----~~l~~~~~~ 143 (287)
T 3w0f_A 82 ELFMYFGP-RALRIHFGMKGSILINPRE------------GENRAGASPALAVQLTRD-LICFYDSS----VELRNSVES 143 (287)
T ss_dssp EEEEEETT-EEEEEEEEEEEEEEESCTT------------CCC----CCSEEEEESSC-EEEEEEEE----EEEEEHHHH
T ss_pred EEEEEeCC-CEEEEEcCCcEEEEEeCCC------------CCCCCCCceEEEEEEcCC-eEEEEeCE----EEEEeCccc
Confidence 99999987 4899999999999997531 1232 4789999999998 78999985 77764211
Q ss_pred --CCCCcccCCCCCCCCCCCHHHHHHHHcC-CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHH
Q 022931 139 --SVPPISELGPDALLEPMTVDEFTDSLSK-KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATL 215 (290)
Q Consensus 139 --~~~~l~~LGpDpL~~~f~~~~f~~~l~~-~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L 215 (290)
....++ |||||+++|+.++|.+++++ ++++||++||||++||||||||+|||||+|||||.+++++||++|+++|
T Consensus 144 ~~~~~~L~--gldPL~~~Fd~~~l~~~L~~~~~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L 221 (287)
T 3w0f_A 144 QQRVRVME--ELDICSPKFSFSRAESEVKKQGDRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHL 221 (287)
T ss_dssp HHHHHHHG--GGCTTCTTCCHHHHHHHHHTTCSSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHH
T ss_pred hhhccccc--CCCCCCCCCCHHHHHHHHhcCCcccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHH
Confidence 112222 89999999999999999998 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhccccccccccCccceeecCCCCCCccccccceee--e---ccceeeecc
Q 022931 216 LKCIKEVREA-LGVSLQFYKCYFAKPYVHKKHRENKICRLFKVRLKL--M---LTAAAFLLN 271 (290)
Q Consensus 216 ~~~i~~vL~~-i~~~~~~~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~--~---~~~~~~~~~ 271 (290)
+++|++||.. ++.... ...|+.+++||+|+ |||+||++|.+ + +|+|+||-.
T Consensus 222 ~~ai~~Vl~~~~~~~g~---~g~~~~~l~VYgR~--pC~~CGt~I~~~~~g~~gRsTyfCp~ 278 (287)
T 3w0f_A 222 VKMTRDFSILFYRCCKA---GSAISKHCKVYKRP--NCDQCHSKITVCRFGENSRMTYFCPH 278 (287)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCGGGGCSSTTCS--BCTTTCCBCEEECSSTTCCCEEECTT
T ss_pred HHHHHHHHHHHHhccCC---CCcccccEEEECCC--CCCCCCCEEEEEEecCCCCCEEECCC
Confidence 9999999987 665211 12477789999996 99999999885 3 599999964
No 10
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=97.25 E-value=0.00032 Score=55.71 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHH
Q 022931 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (290)
Q Consensus 168 ~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i 219 (290)
+..|.-+| +.|-|||.-+|..||-.++|||..++++||++|+++|.+.|
T Consensus 11 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 11 HKHAVIAL---TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp SSCHHHHG---GGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CCEeHhhH---hhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 55666667 68999999999999999999999999999999999999876
No 11
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=96.98 E-value=0.00075 Score=54.45 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=45.7
Q ss_pred CCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 168 ~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
+..|.-+| +.|-|||.-+|.+||-.+||||..++++||++|+.+|.+.|..
T Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 12 NKRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp SSBHHHHH---TTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred CcEeeeeh---hccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence 45566666 6799999999999999999999999999999999999988874
No 12
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=96.77 E-value=0.0092 Score=54.43 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCHHHHHHHHcCCCCchHHHhhcccccccCCchhhhhh-hhcccccccCcCCCCCHHHHHHHHHHHHHHHH
Q 022931 146 LGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEV-LYQAKIHPLQTAVSLSKESCATLLKCIKEVRE 224 (290)
Q Consensus 146 LGpDpL~~~f~~~~f~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEi-Lf~A~IhP~~~~~~Ls~~e~~~L~~~i~~vL~ 224 (290)
-+.||++ .+.+.|.+.+......+...|.. .+.|+|-.+|.|+ +++|++ ++++|++++++++.
T Consensus 167 ~k~~p~~--~~~e~~~~~l~~~~~~l~~~l~~--~~~G~s~~la~El~~~ra~~------------~~~~l~~~~~~~~~ 230 (288)
T 3doa_A 167 HKINPYD--ITGAEVLKYIDFNAGNIAKQLLN--QFEGFSPLITNEIVSRRQFM------------TSSTLPEAFDEVMA 230 (288)
T ss_dssp CCBCGGG--CCHHHHGGGCCGGGCCHHHHHHH--HBTTCCHHHHHHHHTTSSSC------------STTHHHHHHHHHHH
T ss_pred cCCCccc--CCHHHHHHHHhhCcchHHHHHHH--HcCCCCHHHHHHHHHHHcCC------------cHHHHHHHHHHHHH
Confidence 4678884 67888988886554567777764 7899999999999 999984 25688888888888
Q ss_pred HHh
Q 022931 225 ALG 227 (290)
Q Consensus 225 ~i~ 227 (290)
++.
T Consensus 231 ~~~ 233 (288)
T 3doa_A 231 ETK 233 (288)
T ss_dssp HHT
T ss_pred Hhh
Confidence 743
No 13
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.77 E-value=0.0014 Score=54.49 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=46.2
Q ss_pred CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.+..|.-+| +.|-|||.-+|..||-.|+|||..++++||++|+++|.+.|.
T Consensus 22 ~~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 72 (152)
T 3iz6_M 22 GKQKIMFAL---TSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVH 72 (152)
T ss_dssp CSSBHHHHH---TTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHH
T ss_pred CCcEeHhhh---hhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHH
Confidence 467777787 569999999999999999999999999999999999988775
No 14
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=96.74 E-value=0.0017 Score=54.18 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=46.5
Q ss_pred CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
.+..|.-+| +.|-|||.-+|..||-.++|||..++++||++|+++|.+.|..
T Consensus 24 ~~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 24 GKRITPIAL---TGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp CSSCHHHHH---TTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred CCCEEEEee---ecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence 356666677 6799999999999999999999999999999999999888875
No 15
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.64 E-value=0.0014 Score=54.21 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=45.5
Q ss_pred CCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 168 ~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
+..|.-+| +.|-|||.-+|..||-.|+|||..++++||++|+++|.+.|..
T Consensus 18 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 18 NKQLRWAL---TAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp SSCHHHHH---HHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHC
T ss_pred CCEehhhh---hhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhc
Confidence 56666777 5788999999999999999999999999999999999988764
No 16
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=96.57 E-value=0.0014 Score=54.13 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.+..|.-+| +.|-|||.-+|..||-.|+|||..++++||++|+++|.+.|.
T Consensus 24 ~~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 74 (146)
T 3u5c_S 24 GNIKIVYAL---TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 74 (146)
T ss_dssp SSSCTTTTG---GGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred CCcchHhhH---hhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence 356666666 568999999999999999999999999999999999988775
No 17
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=94.08 E-value=0.018 Score=47.34 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=42.3
Q ss_pred CCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKC 218 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~ 218 (290)
.+..|.-+| ..|-|||.-+|.+||-.+|| |..++++||++|+.+|.+.
T Consensus 56 ~~K~v~~aL---t~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 56 NHKRVEYSL---QYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp CSSBTTTGG---GGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred CCCEEEEee---eeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 356666666 78999999999999999999 9999999999999998766
No 18
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=89.21 E-value=1.1 Score=43.33 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=56.9
Q ss_pred CCHHHHHHHHcCCC-C-chHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHH
Q 022931 155 MTVDEFTDSLSKKK-I-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (290)
Q Consensus 155 f~~~~f~~~l~~~~-~-~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~v 222 (290)
++.+.+...+...+ . .+..+|..+ +.+||.-.|.|++=.+|++|..+..+|+.+++++|+++++++
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~fl~~~--f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 237 VDREEIKILINNLKRDYTIKEFLVNE--FQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp CCHHHHHHHSTTCSSCCBHHHHHTTS--SSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhcCCCcchHHhhhcc--ccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 56777777776543 3 788988754 899999999999999999999999999999999999999976
No 19
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=86.88 E-value=0.72 Score=40.72 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=42.2
Q ss_pred HHHHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 161 ~~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
...+..|++++++.|-. ++..++|=.+||+|.+++.+||.+|+.+|++.+..
T Consensus 199 ~~~F~~rrK~l~n~l~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~~ 250 (252)
T 1qyr_A 199 TEAFNQRRKTIRNSLGN---------LFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp HHHHHTTTSBHHHHTTT---------TCCHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHhh---------hhhHHHHHHcCCCCCCChHHCCHHHHHHHHHHHHh
Confidence 33456789999999841 12277888999999999999999999999988753
No 20
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=82.20 E-value=1.5 Score=38.67 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHH
Q 022931 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (290)
Q Consensus 163 ~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i 219 (290)
.+..|++++++.|-. ++..|.|=.+||+|.+++.+||.+|+.+|.+++
T Consensus 207 ~F~~rrK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 207 AFSYRRKTVGNALKK---------LINPSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHSTTSCHHHHTTT---------TCCGGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHccChHHHHHHhh---------hCCHHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 356789999998843 123577878999999999999999999998764
No 21
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=81.35 E-value=1.5 Score=39.19 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=40.2
Q ss_pred HHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 163 ~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
.+..|++++++.|-. . +..++|=.++|+|.+++.+||.+|+.+|.+++..
T Consensus 225 ~F~~rrK~l~n~L~~--~-------~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 225 AFSQRRKMLRNTLGG--Y-------RDLVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HGGGTTSBHHHHTGG--G-------TTTCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHh--h-------cCHHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 356788999998843 1 1257777889999999999999999999988753
No 22
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=80.80 E-value=1.5 Score=39.13 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 163 ~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.+..|++++++.|-. . |.+.-...++|=.++|+|.+++.+||.+|+.+|++++.
T Consensus 215 ~F~~rrKtL~n~L~~--~--~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 215 AFGKRRKTLLNALAA--A--GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp HTSSTTSCHHHHHHH--T--TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHh--h--cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 457789999998832 1 33455667889999999999999999999999998875
No 23
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=80.51 E-value=0.92 Score=37.75 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=20.7
Q ss_pred ecCCCCCCccccccceeeeccceeeecceeE
Q 022931 244 KKHRENKICRLFKVRLKLMLTAAAFLLNGYF 274 (290)
Q Consensus 244 vy~R~g~~C~~Cg~~i~~~~~~~~~~~~~~~ 274 (290)
+||+ -.+||.|++.+.-.+ ++++|. ||+
T Consensus 74 ~FGa-l~~CP~C~G~l~y~~-~~Y~C~-G~i 101 (160)
T 2riq_A 74 VFGA-LLPCEECSGQLVFKS-DAYYCT-GDV 101 (160)
T ss_dssp HHCE-ECCCTTTCCCEEEET-TEEEEC-CEE
T ss_pred HhCC-CCCCCCCCCEEEEeC-CeEEEC-CCC
Confidence 3555 368999998777666 888886 765
No 24
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=80.36 E-value=1.8 Score=39.24 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=47.9
Q ss_pred HHHcCCCCchHHHhhcccccccCCchhhhhhhhcc-----cccc--cCcCCCCCHHHHHHHHHHHHHHHH
Q 022931 162 DSLSKKKITIKALLLDQSYISGIGNWVADEVLYQA-----KIHP--LQTAVSLSKESCATLLKCIKEVRE 224 (290)
Q Consensus 162 ~~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A-----~IhP--~~~~~~Ls~~e~~~L~~~i~~vL~ 224 (290)
..+..|++++++.|-.-....|+..-++.++|=.+ +|+| .+++.+||.+|+.+|.+++..-+.
T Consensus 221 ~~F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~~~~ 290 (295)
T 3gru_A 221 AIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQ 290 (295)
T ss_dssp HHHTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHHhhh
Confidence 34678899999999653322344444667788887 8999 999999999999999998875544
No 25
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.01 E-value=0.6 Score=35.90 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=12.8
Q ss_pred CCCCCCccccccceee
Q 022931 246 HRENKICRLFKVRLKL 261 (290)
Q Consensus 246 ~R~g~~C~~Cg~~i~~ 261 (290)
...|.+||.||.++..
T Consensus 44 ~~~g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 44 KKAKGKCPVCGRELTD 59 (112)
T ss_dssp TTCSEECTTTCCEECH
T ss_pred hcCCCCCCCCCCcCCH
Confidence 3458899999998873
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=73.69 E-value=18 Score=35.45 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=56.1
Q ss_pred CCHHHHHHHHcCCC-C-chHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHHH
Q 022931 155 MTVDEFTDSLSKKK-I-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (290)
Q Consensus 155 f~~~~f~~~l~~~~-~-~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~v 222 (290)
.+.+.+.+.+.... . .|..+|. +.+.++|.-.+++++=.+|+.|..+..+|+.+++++|+++++.+
T Consensus 236 i~~~~~l~~~~~~~~~~~l~~fl~--~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 236 VDREEIKILINNLKRDYTIKEFLV--NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp CCHHHHHHHHTTCSSCCBHHHHHH--TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhccCCCceeHhhhc--CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 56777777666443 4 7899987 56788999999999999999999988999999999999999965
No 27
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=69.14 E-value=3.2 Score=35.95 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=35.2
Q ss_pred HHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 163 ~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
.+..+++.+.+.| ++|=.+||+|..++.+||.+|+.+|++++..
T Consensus 198 ~F~~rrk~l~~~~---------------~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 198 WVNKEYKKIFTKN---------------QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHTTCGGGTCCHH---------------HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHhhccccccchH---------------HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 3556777777755 3466789999999999999999999988753
No 28
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.82 E-value=1.8 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.4
Q ss_pred Cccccccceeee---ccceeeecce
Q 022931 251 ICRLFKVRLKLM---LTAAAFLLNG 272 (290)
Q Consensus 251 ~C~~Cg~~i~~~---~~~~~~~~~~ 272 (290)
-||.||.++.+. |-..+||-+|
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTT
T ss_pred cCcchhhHHHHHHhcCCcCeeeccC
Confidence 699999998755 7778999886
No 29
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=65.41 E-value=4.4 Score=35.36 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.2
Q ss_pred HHcCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 163 ~l~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.+..|++++++.|-. . +|-.++|+|.+++.+||.+|+.+|++++.
T Consensus 201 ~F~~rrk~l~~~l~~--~-----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 201 IFQNRRKVLRKKIPE--E-----------LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp HHSSTTSCGGGTSCH--H-----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHhCcChhHHHHHHH--H-----------HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 456788888887732 1 67789999999999999999999998875
No 30
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.93 E-value=2.8 Score=31.91 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.0
Q ss_pred ccccccceeee---ccceeeeccee
Q 022931 252 CRLFKVRLKLM---LTAAAFLLNGY 273 (290)
Q Consensus 252 C~~Cg~~i~~~---~~~~~~~~~~~ 273 (290)
||.|+.++++. |-.-+||.+|-
T Consensus 64 CPdC~q~LevLkACGAvdYFC~~ch 88 (101)
T 2jne_A 64 CPDCHQPLQVLKACGAVDYFCQHGH 88 (101)
T ss_dssp CTTTCSBCEEEEETTEEEEEETTTT
T ss_pred CcchhhHHHHHHHhcCcchhhccCC
Confidence 99999888855 77788998874
No 31
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.34 E-value=6.8 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=20.3
Q ss_pred CCCCCccccccceeee-ccceeeecc-eeEEee
Q 022931 247 RENKICRLFKVRLKLM-LTAAAFLLN-GYFIFD 277 (290)
Q Consensus 247 R~g~~C~~Cg~~i~~~-~~~~~~~~~-~~~~~~ 277 (290)
|..+-||+||+.+-+. ...-.+|-. ||-.|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCEEEC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCEEEC
Confidence 4456799999875544 345678865 665554
No 32
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=54.25 E-value=4 Score=27.81 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=15.0
Q ss_pred CCccccccceeeeccceeeecceeE
Q 022931 250 KICRLFKVRLKLMLTAAAFLLNGYF 274 (290)
Q Consensus 250 ~~C~~Cg~~i~~~~~~~~~~~~~~~ 274 (290)
..||.||..... -+.|.+|||
T Consensus 28 ~~c~~cGe~~l~----H~vc~~G~Y 48 (56)
T 3r8s_0 28 SVDKTSGEKHLR----HHITADGYY 48 (56)
T ss_dssp EECTTTCCEEET----TBCCTTSEE
T ss_pred eECCCCCCeecc----cEECCCCeE
Confidence 349999996553 367888865
No 33
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=52.26 E-value=5.8 Score=40.12 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.5
Q ss_pred Cccccccceeee-ccceeeecce
Q 022931 251 ICRLFKVRLKLM-LTAAAFLLNG 272 (290)
Q Consensus 251 ~C~~Cg~~i~~~-~~~~~~~~~~ 272 (290)
.||.||+++.+. |...++|.|+
T Consensus 407 ~CP~Cgs~l~~~~~~~~~rC~n~ 429 (671)
T 2owo_A 407 HCPVCGSDVERVEGEAVARCTGG 429 (671)
T ss_dssp BCTTTCCBEEECTTCSCEEECCG
T ss_pred CCCCCCCEeEEecCCEEEECCCC
Confidence 499999998865 7788889986
No 34
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=51.74 E-value=5.2 Score=40.42 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=18.9
Q ss_pred Cccccccceeeeccceeeeccee
Q 022931 251 ICRLFKVRLKLMLTAAAFLLNGY 273 (290)
Q Consensus 251 ~C~~Cg~~i~~~~~~~~~~~~~~ 273 (290)
.||.||+++ ..|...++|.|+.
T Consensus 405 ~CP~Cgs~l-~~g~~~~~C~n~~ 426 (667)
T 1dgs_A 405 ACPECGHRL-VKEGKVHRCPNPL 426 (667)
T ss_dssp BCTTTCCBC-EEETTEEECCCTT
T ss_pred CCCCCCCCc-cCCCeEEEeCCCC
Confidence 499999999 7787889999964
No 35
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=46.67 E-value=4.1 Score=40.75 Aligned_cols=21 Identities=19% Similarity=-0.037 Sum_probs=0.0
Q ss_pred ccccccceee--eccceeeecce
Q 022931 252 CRLFKVRLKL--MLTAAAFLLNG 272 (290)
Q Consensus 252 C~~Cg~~i~~--~~~~~~~~~~~ 272 (290)
||.||+++.. -|..+.+|.|+
T Consensus 418 CP~Cgs~l~~~~~~~~~~rC~n~ 440 (615)
T 3sgi_A 418 CPECGSPLAPEKEGDADIRCPNA 440 (615)
T ss_dssp -----------------------
T ss_pred CCCCCCeeeecCCCCEEEEcCCC
Confidence 9999999876 36678999997
No 36
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.13 E-value=7.2 Score=26.76 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.8
Q ss_pred CCCCccccccceeee
Q 022931 248 ENKICRLFKVRLKLM 262 (290)
Q Consensus 248 ~g~~C~~Cg~~i~~~ 262 (290)
.-++||.|+.+|.+.
T Consensus 5 ~~k~CP~C~~~Iek~ 19 (60)
T 1wd2_A 5 NTKECPKCHVTIEKD 19 (60)
T ss_dssp CCCCCTTTCCCCSSC
T ss_pred cceECcCCCCeeEeC
Confidence 447899999999976
No 37
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=46.08 E-value=38 Score=31.25 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHc--CCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 153 EPMTVDEFTDSLS--KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 153 ~~f~~~~f~~~l~--~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
++++.+.+.+.++ ..++.|++.|-+. +..-++..+|-.++|+ ..+.+++|+++.++|.+.++
T Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~l~~~-----lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 326 (401)
T 2gqf_A 263 PNHNVEEEINQAKQSSPKQMLKTILVRL-----LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIH 326 (401)
T ss_dssp SSSCHHHHHHHHHHHCTTSBHHHHHTTT-----SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcccccHHHHhhhh-----cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHh
Confidence 4567776655554 4588999998653 4566777788888997 57889999999998886665
No 38
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=45.58 E-value=12 Score=25.21 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCCCccccccceeee-ccceeeecc-eeEEeech
Q 022931 247 RENKICRLFKVRLKLM-LTAAAFLLN-GYFIFDGA 279 (290)
Q Consensus 247 R~g~~C~~Cg~~i~~~-~~~~~~~~~-~~~~~~~~ 279 (290)
|.-+.||+||..+... -...++|-. ||-.|.++
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCEECCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEEEeCc
Confidence 4457899999866533 235788875 77666553
No 39
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=44.79 E-value=8.8 Score=31.24 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=12.0
Q ss_pred Cccccccceeeecc
Q 022931 251 ICRLFKVRLKLMLT 264 (290)
Q Consensus 251 ~C~~Cg~~i~~~~~ 264 (290)
.||.||.++++..|
T Consensus 150 ~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 150 VCPDCGSKVKLIPR 163 (165)
T ss_dssp BCTTTCCBEEECCC
T ss_pred cCCCCCCcceeCCc
Confidence 69999999888766
No 40
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.49 E-value=20 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCccccccceeeeccceeeecc-----eeEEeechh
Q 022931 250 KICRLFKVRLKLMLTAAAFLLN-----GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~~~~~~~~~~-----~~~~~~~~~ 280 (290)
-.||.|++++.... +.-.|.| .|=|-||.-
T Consensus 11 L~CP~c~~~L~~~~-~~L~C~~~~c~~~YPI~dGIP 45 (56)
T 2kpi_A 11 LACPACHAPLEERD-AELICTGQDCGLAYPVRDGIP 45 (56)
T ss_dssp CCCSSSCSCEEEET-TEEEECSSSCCCEEEEETTEE
T ss_pred eeCCCCCCcceecC-CEEEcCCcCCCcEEeeECCEe
Confidence 45999999987655 7777773 678888853
No 41
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=44.35 E-value=7.8 Score=38.53 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.9
Q ss_pred Cccccccceeee-ccceeeecce
Q 022931 251 ICRLFKVRLKLM-LTAAAFLLNG 272 (290)
Q Consensus 251 ~C~~Cg~~i~~~-~~~~~~~~~~ 272 (290)
.||.||+++.+. |....+|.|+
T Consensus 407 ~CP~Cgs~~~~~~~~~~~rC~n~ 429 (586)
T 4glx_A 407 HCPVCGSDVERVEGEAVARCTGG 429 (586)
T ss_dssp BCTTTCCBEECCTTCSCCEESCG
T ss_pred cCCCCCCchhhhhcccccEeCCC
Confidence 399999998754 8889999997
No 42
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=37.86 E-value=49 Score=30.78 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=46.0
Q ss_pred CCCHHHHHHHH--cCCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 154 PMTVDEFTDSL--SKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 154 ~f~~~~f~~~l--~~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
+.+.+.+.... ...++.+++.|-. .+..=++..+|-.++| |.++.+++++++..+|.+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 345 (417)
T 3v76_A 283 DIDIASILKGMRRANGRQAVQTALAD-----ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQ 345 (417)
T ss_dssp TSCHHHHHHHHHHHTCSSBHHHHHTT-----TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhchhhhHHHHHHH-----HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhc
Confidence 45666554433 2468889888753 2556677888889999 999999999999999987776
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.41 E-value=8.7 Score=25.69 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=15.8
Q ss_pred CCCCCccccccceeeeccceeeec
Q 022931 247 RENKICRLFKVRLKLMLTAAAFLL 270 (290)
Q Consensus 247 R~g~~C~~Cg~~i~~~~~~~~~~~ 270 (290)
++...||+||+. .+.|+..|-
T Consensus 12 ~~k~iCpkC~a~---~~~gaw~Cr 32 (51)
T 3j21_g 12 FKKYVCLRCGAT---NPWGAKKCR 32 (51)
T ss_dssp SSEEECTTTCCE---ECTTCSSCS
T ss_pred hCCccCCCCCCc---CCCCceecC
Confidence 344679999987 777888776
No 44
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=33.94 E-value=13 Score=31.45 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=13.1
Q ss_pred eeecCCCCCCccccc
Q 022931 242 VHKKHRENKICRLFK 256 (290)
Q Consensus 242 ~~vy~R~g~~C~~Cg 256 (290)
--|+|++|+||..|-
T Consensus 20 ~~v~~~dgkPcr~C~ 34 (189)
T 4e0i_A 20 KIIYDEDGKPSRSCN 34 (189)
T ss_dssp TEECCCSSSSCSTTS
T ss_pred eeeeCCCCCCCcccc
Confidence 347999999999997
No 45
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=32.66 E-value=35 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.3
Q ss_pred hhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 190 DEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 190 dEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.++|=.++|.| +++.+||.+++.+|.+++.
T Consensus 261 ~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~ 290 (299)
T 2h1r_A 261 LDVLEHLDMCE-KRSINLDENDFLKLLLEFN 290 (299)
T ss_dssp HHHHHHTTCTT-CBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCC-CChhhCCHHHHHHHHHHHH
Confidence 56788899987 6999999999999998875
No 46
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.59 E-value=31 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCccccccceeee-ccceeeecc---eeEEeechh
Q 022931 250 KICRLFKVRLKLM-LTAAAFLLN---GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~-~~~~~~~~~---~~~~~~~~~ 280 (290)
-.||.|++++... ..|.-.|.+ -|=|-||.-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIP 45 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIP 45 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCCCEe
Confidence 4599999998854 566777754 677888753
No 47
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=32.26 E-value=27 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=16.3
Q ss_pred CCcccccc-ceee-eccceeeecce
Q 022931 250 KICRLFKV-RLKL-MLTAAAFLLNG 272 (290)
Q Consensus 250 ~~C~~Cg~-~i~~-~~~~~~~~~~~ 272 (290)
..||.||. .|.. ..+|...|.+-
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSS
T ss_pred EeCcCCCCcceEEcCCCCeEECccc
Confidence 46999988 6654 36677888654
No 48
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=32.14 E-value=29 Score=23.34 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=25.5
Q ss_pred hcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEEEEEe
Q 022931 47 VLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIK 85 (290)
Q Consensus 47 L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~l~~~ 85 (290)
+.=.+|..|+|.||.+-|..|++. |-||+=-+.
T Consensus 15 vdiskikkvwrvgkmisftyddgn------gktgrgavs 47 (64)
T 1c8c_A 15 VDISKIKKVWRVGKMISFTYDEGG------GKTGRGAVS 47 (64)
T ss_dssp EEGGGEEEEEEETTEEEEEEECGG------GCEEEEEEE
T ss_pred ecHHHHHHHHhhcceEEEEEecCC------Ccccccccc
Confidence 344579999999999999998853 667775554
No 49
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=32.11 E-value=13 Score=23.41 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=9.5
Q ss_pred CCccccccceee
Q 022931 250 KICRLFKVRLKL 261 (290)
Q Consensus 250 ~~C~~Cg~~i~~ 261 (290)
..|++||..|..
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 359999988764
No 50
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=31.18 E-value=40 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCccccccceeee-ccceeeecc---eeEEeechh
Q 022931 250 KICRLFKVRLKLM-LTAAAFLLN---GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~-~~~~~~~~~---~~~~~~~~~ 280 (290)
-.||.|++++... ..+.-.|-+ .|=|-||.-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVP 43 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEETTEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCCCCee
Confidence 4599999998855 456777743 677888753
No 51
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=31.15 E-value=91 Score=28.81 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCCHHHHHHHH----c-CCCCchHHHhhcccccccCCchhhhhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 154 PMTVDEFTDSL----S-KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 154 ~f~~~~f~~~l----~-~~~~~IK~~LLDQ~~iaGIGNiyadEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
+++.+.+.+.+ . .++..+++.|. ..+ -.=...+++=.++|+|..+.+++++++..+|.+.++
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~---~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 367 (447)
T 2i0z_A 301 EENSEQLFQRMLKQMKEDPKKGIKNVLK--GYV---PERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFK 367 (447)
T ss_dssp TSCHHHHHHHHHHHHTTSTTSBHHHHTT--TSS---CHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHhcc--ccC---hHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhh
Confidence 46778876666 3 35788999873 222 233566777778999999999999999987766555
No 52
>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics center for infectious disease, ssgcid, botulinum neurotoxin; 1.56A {Clostridium botulinum} PDB: 4f83_A* 3ogg_A 3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A
Probab=29.99 E-value=17 Score=33.98 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCCchHHHhhcccccccCCchhhh-hhhhc--ccccccCc---------CCCCCHHHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVAD-EVLYQ--AKIHPLQT---------AVSLSKESCATLLKCIK 220 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyad-EiLf~--A~IhP~~~---------~~~Ls~~e~~~L~~~i~ 220 (290)
.+-=|-.-|+||.-|..|||||++ .|+|. ...+|.+. ..+|+++|+..|+..-.
T Consensus 153 ~~IyINg~Li~~~~I~~L~nI~~Sn~I~fki~~~~d~n~~i~I~~f~IfnkeL~~~EI~~lY~s~~ 218 (420)
T 3pme_A 153 MKLYINGELKQSERIEDLDEVKLDKTIVFGIDENIDENQMLWIRDFNIFSKELSNEDINIVYEGQI 218 (420)
T ss_dssp EEEEETTEEEEEEECTTSCCCCCCSEEEESCCSCCCTTCCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred ceEEECCEEecchhhhhhcceeeccEEEEEEcCCCCCCcEEEEEeeEeecccCCHHHHHHHHhccc
Confidence 355677889999999999999985 68887 66676443 68999999999997643
No 53
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.90 E-value=44 Score=23.40 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCccccccceeee-ccceeeecc---eeEEeechh
Q 022931 250 KICRLFKVRLKLM-LTAAAFLLN---GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~-~~~~~~~~~---~~~~~~~~~ 280 (290)
-.||.|++++... ..+.-.|-+ .|=|-||.-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIP 43 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCee
Confidence 4599999998854 566667743 677888753
No 54
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=28.31 E-value=25 Score=29.22 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=17.6
Q ss_pred ccccccceeeeccceeeecc
Q 022931 252 CRLFKVRLKLMLTAAAFLLN 271 (290)
Q Consensus 252 C~~Cg~~i~~~~~~~~~~~~ 271 (290)
||.|..++...+.|+.+|-.
T Consensus 45 Cp~CnKKV~~~~~g~~~Cek 64 (172)
T 3u50_C 45 CTCQGKSVLKYHGDSFFCES 64 (172)
T ss_dssp CTTSCCCEEEETTTEEEETT
T ss_pred chhhCCEeeeCCCCeEECCC
Confidence 99999999888889999964
No 55
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=27.64 E-value=17 Score=25.06 Aligned_cols=21 Identities=19% Similarity=0.244 Sum_probs=12.9
Q ss_pred CCccccccceeeeccceeeecc-eeE
Q 022931 250 KICRLFKVRLKLMLTAAAFLLN-GYF 274 (290)
Q Consensus 250 ~~C~~Cg~~i~~~~~~~~~~~~-~~~ 274 (290)
..||.||...... +.|.+ |||
T Consensus 31 ~~c~~cGe~~~~H----~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMKPPH----TVCPECGYY 52 (60)
T ss_dssp EECTTTCCEECTT----SCCTTTCEE
T ss_pred eECCCCCCeecce----EEcCCCCcC
Confidence 3499999865432 44666 654
No 56
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.52 E-value=47 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCccccccceeee-ccceeeecc---eeEEeechh
Q 022931 250 KICRLFKVRLKLM-LTAAAFLLN---GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~-~~~~~~~~~---~~~~~~~~~ 280 (290)
-.||.|++++... ..+.-.|-+ .|=|-||.-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIP 43 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCee
Confidence 3599999998854 466666643 677888753
No 57
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=26.56 E-value=24 Score=29.98 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=26.2
Q ss_pred hhhhcccccccCcCCCCCHHHHHHHHHHHHH
Q 022931 191 EVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (290)
Q Consensus 191 EiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (290)
+++=.+++.|..++.+||.+++.+|++....
T Consensus 210 ~~~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 210 QFHQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 3556678999999999999999999987653
No 58
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=26.04 E-value=43 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.2
Q ss_pred hhhhhcccccccCcCCCCCHHHHHHHHHHHH
Q 022931 190 DEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (290)
Q Consensus 190 dEiLf~A~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (290)
.++|-.++|. .+++.+||.+|+.+|.+++.
T Consensus 249 ~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~ 278 (285)
T 1zq9_A 249 QQILTSTGFS-DKRARSMDIDDFIRLLHGFN 278 (285)
T ss_dssp HHHHHHHTCT-TCBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCC-CCChhhCCHHHHHHHHHHHH
Confidence 5788889997 67999999999999998864
No 59
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.77 E-value=23 Score=20.66 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=9.1
Q ss_pred CCcccccccee
Q 022931 250 KICRLFKVRLK 260 (290)
Q Consensus 250 ~~C~~Cg~~i~ 260 (290)
+.|++||..+-
T Consensus 4 ~~C~~C~k~Vy 14 (31)
T 1zfo_A 4 PNCARCGKIVY 14 (31)
T ss_dssp CBCSSSCSBCC
T ss_pred CcCCccCCEEe
Confidence 57999998875
No 60
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.57 E-value=53 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCccccccceeee-ccceeeecc---eeEEeechh
Q 022931 250 KICRLFKVRLKLM-LTAAAFLLN---GYFIFDGAK 280 (290)
Q Consensus 250 ~~C~~Cg~~i~~~-~~~~~~~~~---~~~~~~~~~ 280 (290)
-.||.|++++... ..+.-.|-+ .|=|-||.-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIRDGIP 43 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEETTEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCee
Confidence 4599999998844 456666643 577778753
No 61
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=24.48 E-value=24 Score=24.78 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=24.2
Q ss_pred cccccCcCCCCCHHHHHHHHHHHHHHHHH
Q 022931 197 KIHPLQTAVSLSKESCATLLKCIKEVREA 225 (290)
Q Consensus 197 ~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ 225 (290)
...|.+++-+||.+||..|.+++-.|=+.
T Consensus 34 ~~~PgkKGIsL~~~qw~~l~~~~~~I~~a 62 (66)
T 1pcf_A 34 EMKPGRKGISLNPEQWSQLKEQISDIDDA 62 (66)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccccccCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999988766443
No 62
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.13 E-value=34 Score=27.21 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=33.9
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHH--Hhc------cccccccccCccceeecCCCCCCccccccceeeeccceeeecc
Q 022931 200 PLQTAVSLSKESCATLLKCIKEVREA--LGV------SLQFYKCYFAKPYVHKKHRENKICRLFKVRLKLMLTAAAFLLN 271 (290)
Q Consensus 200 P~~~~~~Ls~~e~~~L~~~i~~vL~~--i~~------~~~~~~~~~~~~~~~vy~R~g~~C~~Cg~~i~~~~~~~~~~~~ 271 (290)
|....+.||++|.+.|.+-+++--+. .+. .+.+.+ . + ..+-+.....|.+|+.++...++..+.|.+
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~-~--k--~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~ 77 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLET-M--R--KNVAGDGVNRCILCGEQLGMLGSASVVCED 77 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--H--HTCCSCSSSBCSSSCCBCSTTSCCEEECTT
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH-H--H--HHhccCCCccccccCCCcccccCCCCCCCC
Confidence 55667889999987776655443332 111 111100 0 0 011123346699999998766666677654
No 63
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=23.10 E-value=39 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=14.6
Q ss_pred cccc-ccceeeeccceeeecc
Q 022931 252 CRLF-KVRLKLMLTAAAFLLN 271 (290)
Q Consensus 252 C~~C-g~~i~~~~~~~~~~~~ 271 (290)
||-| |+--+-..+|-.||.|
T Consensus 14 cpccpgtsck~e~ngv~ycr~ 34 (37)
T 1dl0_A 14 CPCCPGTSCKAESNGVSYCRK 34 (37)
T ss_dssp CCCCTTEEEEECTTSCEEEEE
T ss_pred cCCCCCcccccCcCCceeecc
Confidence 4445 5556677899999987
No 64
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=22.45 E-value=54 Score=22.97 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=25.0
Q ss_pred hcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEEEEEe
Q 022931 47 VLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIK 85 (290)
Q Consensus 47 L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~l~~~ 85 (290)
+.-.+|..|+|.||.+-|..|++ |-||+=-+.
T Consensus 15 vd~skikkvwrvgkmvsftyddn-------gktgrgavs 46 (80)
T 1wvl_A 15 VDTSKIKKVWRVGKMVSFTYDDN-------GKTGRGAVS 46 (80)
T ss_dssp EEGGGEEEEEEETTEEEEEEEET-------TEEEEEEEE
T ss_pred ccHHHHHHHHhhcceEEEEEcCC-------Ccccccccc
Confidence 34468999999999999999875 567775554
No 65
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} PDB: 2vua_A 3fuo_A
Probab=22.14 E-value=33 Score=32.53 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=41.4
Q ss_pred CCCchHHHhhcccccccCCchhhh-hhhh--cccccccC---------cCCCCCHHHHHHHHHHHH
Q 022931 167 KKITIKALLLDQSYISGIGNWVAD-EVLY--QAKIHPLQ---------TAVSLSKESCATLLKCIK 220 (290)
Q Consensus 167 ~~~~IK~~LLDQ~~iaGIGNiyad-EiLf--~A~IhP~~---------~~~~Ls~~e~~~L~~~i~ 220 (290)
.+-=|-.-|+||.-|..+||||++ .|+| ....++.+ -..+|+++|+..|+..-.
T Consensus 174 ~~IyINg~Li~~~~I~~lgnI~~sn~I~fkl~~~nd~~~~i~I~~f~IfnkeL~~~EI~~lY~~~~ 239 (444)
T 2vu9_A 174 SKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEKEIKDLYDNQS 239 (444)
T ss_dssp EEEEETTEEEEEEECTTCCCEECCSEEEEEEESCCCTTCEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred eeEEECCEEeeccchhhhhcceecceEEEEecCCCCCCceEEEeeeeeecccCCHHHHHHHHhhcc
Confidence 345677889999999999999975 6788 44444423 267899999999998644
No 66
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=21.92 E-value=56 Score=22.92 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=25.3
Q ss_pred hhcCCEEEEEEeeeeEEEEEeCCCCceEEecCceEEEEEe
Q 022931 46 SVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIK 85 (290)
Q Consensus 46 ~L~G~~i~~v~RrGK~L~~~l~~~~~L~~HLgMtG~l~~~ 85 (290)
.+.-.+|.+|+|.||.+-|..+++ |-||+=.+.
T Consensus 25 EVDtSKikkVwrvGKmvsFtYddn-------GKtGrGaVs 57 (79)
T 2xiw_A 25 EVDTSKIRDVSRQGKNVKFLYNDN-------GKYGAGNVD 57 (79)
T ss_dssp EEEGGGEEEEEEETTEEEEEEEET-------TEEEEEEEE
T ss_pred cccHHHHHHHHHhcceeEEEEcCC-------CcccCCccC
Confidence 345568999999999999998864 566765554
Done!