BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022933
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/263 (57%), Positives = 186/263 (70%), Gaps = 9/263 (3%)
Query: 28 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPG 87
F ++ TW+ H++ GG IQL LD+ + G GF SK YLFG SM++KLVPG
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDK---YTGTGFQSKGSYLFGHFSMQMKLVPG 71
Query: 88 DSAGTVTAFYMNS-NTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDP 146
DSAGTVTAFY++S N+E+ DE+DFEFLGNRTGQPY +QTN++ GKGDREQR+ LWFDP
Sbjct: 72 DSAGTVTAFYLSSQNSEH--DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP 129
Query: 147 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRG 204
++H Y++LWN + IVF VDDVPIRV+KN FP NQPM +YS+LW ADDWATRG
Sbjct: 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 189
Query: 205 GLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWV 263
GLEK DWSKAPF A YR F I+GC A CA+ WW+ +Q L A + RR WV
Sbjct: 190 GLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWV 249
Query: 264 RLNHMIYDYCTDKSRYPVPPPEC 286
R + IY+YCTD+SRYP PPEC
Sbjct: 250 RQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 145/259 (55%), Gaps = 13/259 (5%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDS 89
F + + W H R +G ++ + LD S G GF S +Y G IKL G +
Sbjct: 20 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTS---GSGFKSINRYRSGYFGANIKLQSGYT 74
Query: 90 AGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPA 147
AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP
Sbjct: 75 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPT 134
Query: 148 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLE 207
DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G
Sbjct: 135 QDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKY 193
Query: 208 KIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNH 267
K D+ PF Y DF + C V ++C NP + + Y L+ + WV+ N+
Sbjct: 194 KADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNY 248
Query: 268 MIYDYCTDKSRYPVPPPEC 286
M+Y+YC D +R PEC
Sbjct: 249 MVYNYCDDPTRDHTLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 145/259 (55%), Gaps = 13/259 (5%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDS 89
F + + W H R +G ++ + LD S G GF S +Y G IKL G +
Sbjct: 43 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTS---GSGFKSINRYRSGYFGANIKLQSGYT 97
Query: 90 AGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPA 147
AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R++LWFDP
Sbjct: 98 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPT 157
Query: 148 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLE 207
DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT G
Sbjct: 158 QDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWATENGKY 216
Query: 208 KIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNH 267
K D+ PF Y DF + C V ++C NP + + Y L+ + WV+ N+
Sbjct: 217 KADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEWVQKNY 271
Query: 268 MIYDYCTDKSRYPVPPPEC 286
M+Y+YC D +R PEC
Sbjct: 272 MVYNYCDDPTRDHTLTPEC 290
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 145/264 (54%), Gaps = 18/264 (6%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDS 89
F + + W H R +G ++ + LD S G GF S +Y G IKL G +
Sbjct: 19 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTS---GSGFKSINRYRSGYFGANIKLQSGYT 73
Query: 90 AGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNL 142
AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD RE R++L
Sbjct: 74 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHL 133
Query: 143 WFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWAT 202
WFDP DYH Y I W I+F+VDDVPIR Y A FP+ +PM VY ++W+A WAT
Sbjct: 134 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPMWVYGSVWDASSWAT 192
Query: 203 RGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRW 262
G K D+ PF Y DF + C V ++C NP + + Y L+ + W
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEW 247
Query: 263 VRLNHMIYDYCTDKSRYPVPPPEC 286
V+ N+M+Y+YC D +R PEC
Sbjct: 248 VQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 145/264 (54%), Gaps = 18/264 (6%)
Query: 30 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDS 89
F + + W H R +G ++ + LD S G GF S +Y G IKL G +
Sbjct: 22 FDQGYTNLWGPQHQRVDQG--SLTIWLDSTS---GSGFKSINRYRSGYFGANIKLQSGYT 76
Query: 90 AGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNL 142
AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD RE R++L
Sbjct: 77 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHL 136
Query: 143 WFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWAT 202
WFDP DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A WAT
Sbjct: 137 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASSWAT 195
Query: 203 RGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRW 262
G K D+ PF Y DF + C V ++C NP + + Y L+ + W
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAAMEW 250
Query: 263 VRLNHMIYDYCTDKSRYPVPPPEC 286
V+ N+M+Y+YC D +R PEC
Sbjct: 251 VQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 38 WSDAHLRQIEGGRA-IQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAF 96
W+ H+ G + L + F G G S + Y +G + +K P + G V+AF
Sbjct: 21 WAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAF 78
Query: 97 YMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYT 154
Y ++ + DE+D EFLG T + VQ N Y NG G+ E+ VNL FD A YH Y
Sbjct: 79 YTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYA 135
Query: 155 ILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLEKIDW 211
W + I +YVD K++ P P +Y +LW D+W G +
Sbjct: 136 FDWQPNSIKWYVDG----QLKHTATTQIPQT-PGKIYMSLWAGAGVDEWL--GSYNGV-- 186
Query: 212 SKAPFYAYYR 221
P YA+Y
Sbjct: 187 --TPLYAHYN 194
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 20/193 (10%)
Query: 34 FKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTV 93
F TW ++ G + + CG Q +G ++ + P + G V
Sbjct: 30 FNCTWRANNVSMTSLGEMRLSLTSPSYNKFDCGENRSVQ-TYGYGLYEVNMKPAKNVGIV 88
Query: 94 TAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYH 151
++F+ + + DE+D EFLG T + VQ N Y NG G+ E+ VNL FD A YH
Sbjct: 89 SSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYH 145
Query: 152 LYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLEK 208
Y W + I +YVD K++ P P + LW D+W G
Sbjct: 146 TYAFDWQPNSIKWYVDG----QLKHTATTQIPQ-TPGKIMMNLWNGAGVDEWL--GSYNG 198
Query: 209 IDWSKAPFYAYYR 221
+ P YA+Y
Sbjct: 199 V----TPLYAHYN 207
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 34 FKVTWSDAHLRQIEGGR-AIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGT 92
F TW ++ G+ + L + F + S Y +G + +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 93 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 150
V++F+ + + DE+D EFLG T + VQ N Y NG G E+ ++L FD + +
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 151 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 200
H Y W +I +YVD V K++ A P + P + LW DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 34 FKVTWSDAHLRQIEGGR-AIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGT 92
F TW ++ G+ + L + F + S Y +G + +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 93 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 150
V++F+ + + DE+D EFLG T + VQ N Y NG G E+ ++L FD + +
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 151 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 200
H Y W +I +YVD V K++ A P + P + LW DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 192
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 74 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 131
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 132 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 191
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 192 STLWEA---DDW 200
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 74 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 131
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 132 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 191
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 192 STLWEA---DDW 200
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 74 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYAN 131
++G ++ + P + G V++F+ + + DE+D EFLG T + VQ N Y N
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 132 GKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVY 191
G G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIM 122
Query: 192 STLWEA---DDW 200
LW DDW
Sbjct: 123 MNLWNGTGVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
Query: 34 FKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTV 93
F TW ++ G + CG Q +G ++++ P + G V
Sbjct: 54 FNCTWRANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQ-TYGYGLYEVRMKPAKNTGIV 112
Query: 94 TAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYH 151
++F+ + + DE+D EFLG T + VQ N Y NG G+ E+ V+L FD A YH
Sbjct: 113 SSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANAYH 169
Query: 152 LYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDWATRGGLEK 208
Y W + I +YVD K++ P P + LW D+W G
Sbjct: 170 TYAFDWQPNSIKWYVDG----QLKHTATNQIPT-TPGKIMMNLWNGTGVDEWL--GSYNG 222
Query: 209 IDWSKAPFYAYY 220
++ P YA+Y
Sbjct: 223 VN----PLYAHY 230
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 34 FKVTWSDAHLRQIEGGR-AIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGT 92
F TW ++ G+ + L + F + S Y +G + +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 93 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADY 150
V++F+ + + D++D +FLG T + VQ N Y NG G E+ ++L FD + +
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 151 HLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 200
H Y W +I +YVD V K++ A P + P + LW DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 34 FKVTWSDAHLRQIEGGRAIQLVLDQNSA---FLGCGFASKRQYLFGRVSMKIKLVPGDSA 90
F W ++ +G + + D S+ + G + ++ ++ +G +++K P +
Sbjct: 48 FNCIWRAYNIELKDGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMK--PAKNP 105
Query: 91 GTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAA 148
G V++F+ + + DE+D EFLG T + VQ N Y N G+ E +L FD +
Sbjct: 106 GIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEYIYDLRFDASE 162
Query: 149 DYHLYTILWNHHHIVFYVD 167
D+H+Y W ++I + VD
Sbjct: 163 DFHIYAFNWQPNYIAWLVD 181
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 107 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 166
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 77
Query: 167 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 200
D V K++ A P + P + LW DDW
Sbjct: 78 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 109
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 134 GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYST 193
G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMN 56
Query: 194 LWEA---DDW 200
LW DDW
Sbjct: 57 LWNGTGVDDW 66
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 34 FKVTWSDAHLRQIEGGR-AIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGT 92
F TW ++ G+ + L + F + S Y +G + +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 93 VTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANG 132
V++F+ + + DE+D EFLG T + VQ N Y NG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 145 DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYS 192
DP ++YH+Y + W + FY D+ +V G + M + +Y+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI--YGSPDYEMGTILNIYT 254
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 78 VSMKIKLVPGDSAGTVTAFYM-NSNTENVR----DELDF-EFLGNRTGQPYTVQTNIYAN 131
V +IKL G G AF+M SN V E+D EFLG+ +P T+ ++
Sbjct: 104 VEARIKLPKG--KGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGP 158
Query: 132 GKGDREQRVNLWFDPAA------DYHLYTILWNHHHIVFYVD 167
G + + P D+H++ I+W I +YVD
Sbjct: 159 GYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVD 200
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 33 DFKVTWSDAHLRQIEGGR 50
D K W D HL++ +GGR
Sbjct: 85 DIKTVWEDTHLQETQGGR 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,702,801
Number of Sequences: 62578
Number of extensions: 428272
Number of successful extensions: 812
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 22
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)