Query 022933
Match_columns 290
No_of_seqs 319 out of 1698
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 2.1E-84 4.5E-89 596.5 34.4 282 1-289 1-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 5.3E-83 1.1E-87 583.2 33.1 256 27-286 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.6E-43 3.4E-48 313.4 25.0 174 36-226 12-200 (203)
4 cd02175 GH16_lichenase lichena 100.0 1.7E-39 3.6E-44 289.0 25.7 176 35-226 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 8.4E-36 1.8E-40 258.0 20.5 175 32-224 3-185 (185)
6 cd02178 GH16_beta_agarase Beta 100.0 2.2E-35 4.9E-40 269.9 23.2 179 40-226 57-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 3.8E-34 8.2E-39 252.1 24.9 175 35-226 24-210 (210)
8 cd08023 GH16_laminarinase_like 100.0 9.3E-34 2E-38 254.9 23.3 179 36-226 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3.8E-31 8.2E-36 243.2 22.9 173 40-226 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.7E-31 3.6E-36 248.3 20.4 184 36-226 36-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 2.2E-31 4.9E-36 243.7 20.9 182 37-226 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 3.1E-29 6.8E-34 236.9 20.3 137 62-201 99-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 8E-29 1.7E-33 233.2 19.3 134 62-198 96-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.1E-26 2.3E-31 220.8 19.7 161 34-201 72-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 1.5E-21 3.2E-26 136.1 4.4 50 236-286 1-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.7 1.1E-16 2.5E-21 156.5 14.5 192 39-239 159-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.7 4.3E-16 9.4E-21 144.0 15.2 168 27-201 10-251 (293)
18 PF13385 Laminin_G_3: Concanav 95.6 0.4 8.7E-06 38.3 12.6 66 146-227 83-148 (157)
19 PF09264 Sial-lect-inser: Vibr 93.5 0.46 1E-05 41.7 8.2 100 62-175 16-121 (198)
20 PF06439 DUF1080: Domain of Un 91.2 2.6 5.6E-05 35.7 10.1 100 64-177 43-156 (185)
21 smart00560 LamGL LamG-like jel 90.5 8.3 0.00018 31.3 14.2 69 146-229 59-129 (133)
22 smart00210 TSPN Thrombospondin 88.2 10 0.00022 32.8 11.6 88 77-175 55-144 (184)
23 PF10287 DUF2401: Putative TOS 83.5 5.6 0.00012 36.2 7.7 78 77-160 102-207 (235)
24 cd00152 PTX Pentraxins are pla 81.2 36 0.00079 29.7 17.7 72 146-226 88-161 (201)
25 PF14099 Polysacc_lyase: Polys 80.8 21 0.00047 31.3 10.5 75 141-225 145-224 (224)
26 smart00159 PTX Pentraxin / C-r 79.5 43 0.00093 29.4 17.6 72 146-226 88-161 (206)
27 PF02973 Sialidase: Sialidase, 75.5 57 0.0012 28.8 12.6 133 73-228 32-175 (190)
28 cd00110 LamG Laminin G domain; 65.7 67 0.0015 25.5 16.8 86 74-174 20-106 (151)
29 PF02210 Laminin_G_2: Laminin 64.0 63 0.0014 24.7 10.1 76 146-227 52-127 (128)
30 PF09224 DUF1961: Domain of un 53.5 45 0.00099 30.0 6.4 59 148-225 159-218 (218)
31 PF00354 Pentaxin: Pentaxin fa 53.1 1.6E+02 0.0034 25.8 10.2 86 146-262 82-169 (195)
32 smart00282 LamG Laminin G doma 52.2 66 0.0014 25.4 6.8 28 147-174 61-88 (135)
33 KOG1834 Calsyntenin [Extracell 49.3 21 0.00046 37.2 4.1 52 147-201 441-492 (952)
34 cd00070 GLECT Galectin/galacto 46.6 72 0.0016 25.5 6.2 46 130-176 59-105 (127)
35 PF13473 Cupredoxin_1: Cupredo 38.8 31 0.00066 26.7 2.7 23 37-60 31-53 (104)
36 KOG4352 Fas-mediated apoptosis 33.7 72 0.0016 27.3 4.2 38 136-174 91-128 (187)
37 PRK02710 plastocyanin; Provisi 32.8 1.4E+02 0.0031 23.7 5.8 20 37-57 43-62 (119)
38 cd06470 ACD_IbpA-B_like Alpha- 28.7 1.2E+02 0.0025 22.9 4.5 49 38-87 22-71 (90)
39 KOG1277 Endosomal membrane pro 28.2 1.1E+02 0.0023 31.0 5.0 36 123-165 173-208 (593)
40 PF06832 BiPBP_C: Penicillin-B 28.1 72 0.0016 23.9 3.2 35 161-195 44-78 (89)
41 PF11948 DUF3465: Protein of u 28.0 2E+02 0.0042 24.0 5.8 48 11-60 7-54 (131)
42 cd06482 ACD_HspB10 Alpha cryst 27.1 93 0.002 23.7 3.6 47 38-87 19-65 (87)
43 PF15240 Pro-rich: Proline-ric 26.8 41 0.00089 29.4 1.7 12 7-18 3-14 (179)
44 cd06526 metazoan_ACD Alpha-cry 24.8 1.5E+02 0.0033 21.8 4.4 44 38-87 18-61 (83)
45 PF00337 Gal-bind_lectin: Gala 24.6 2.8E+02 0.0062 22.0 6.3 47 129-176 63-110 (133)
46 PF07691 PA14: PA14 domain; I 24.5 1.1E+02 0.0024 24.3 3.9 29 146-175 57-85 (145)
47 PF13670 PepSY_2: Peptidase pr 24.4 2.9E+02 0.0063 20.3 6.0 16 45-60 61-76 (83)
48 cd06464 ACD_sHsps-like Alpha-c 22.8 1.9E+02 0.004 20.7 4.5 50 38-87 18-67 (88)
49 PF11191 DUF2782: Protein of u 22.0 3.4E+02 0.0074 21.1 6.1 30 69-102 50-79 (105)
50 PRK13617 psbV cytochrome c-550 21.5 1.4E+02 0.003 26.0 4.0 16 43-58 43-58 (170)
51 PRK11372 lysozyme inhibitor; P 21.0 3.1E+02 0.0067 21.8 5.7 8 94-101 80-87 (109)
52 PF04202 Mfp-3: Foot protein 3 20.9 99 0.0022 22.7 2.5 30 9-38 7-36 (71)
53 PRK11546 zraP zinc resistance 20.5 69 0.0015 27.1 1.9 25 242-267 35-59 (143)
54 smart00276 GLECT Galectin. Gal 20.2 4.5E+02 0.0098 20.9 7.7 47 129-176 57-104 (128)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=2.1e-84 Score=596.50 Aligned_cols=282 Identities=48% Similarity=0.885 Sum_probs=251.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcccccCcccccCceeeecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEE
Q 022933 1 MAILRNAIALFVLLYCLVSCSCVLGRPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSM 80 (290)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~ea 80 (290)
||.|..++.+ ++++.++.-+.-...+|.++|.+.|+.+|+.+..+|+.|+|+||+.+ |++|+||+.|+||+||+
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~s---gs~~~Sk~~f~yGr~E~ 74 (291)
T PLN03161 1 MASLKTLLVA---LFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSS---GSGIKSKRAFLFGSIEM 74 (291)
T ss_pred ChhHHHHHHH---HHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCc---cCcEEecceEEEEEEEE
Confidence 6776433333 33333333333356679999999999999999878888999999999 99999999999999999
Q ss_pred EEEecCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecCCCCCCCcEEEEEEEcCC
Q 022933 81 KIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHH 160 (290)
Q Consensus 81 riKlp~g~s~G~v~AFwl~~~~p~~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~fd~~~dfHtY~i~Wtp~ 160 (290)
|||||+|+++|+||||||++.++. +|||||||+|+++++++++|||+|.+|.+++++++.++||++++||+|+|+|+|+
T Consensus 75 riKLp~G~saG~v~AFwl~s~~~~-~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~ 153 (291)
T PLN03161 75 LIKLVPGNSAGTVTAYYLSSTGSR-HDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPS 153 (291)
T ss_pred EEEeCCCCCCCeEEEEEecCCCCC-CCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchh
Confidence 999999888999999999997666 9999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCeeEEEEeCCCC--CCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEEeeecC-C--CCCc
Q 022933 161 HIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-P--GPAN 235 (290)
Q Consensus 161 ~I~fyVDG~~vr~~~~~~~--~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~-~--~~~~ 235 (290)
+|+|||||++||++++.+. .+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.+ + ....
T Consensus 154 ~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~ 233 (291)
T PLN03161 154 EVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQ 233 (291)
T ss_pred hEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccc
Confidence 9999999999999987554 679988999999999999999999999999999999999999999999987 3 2346
Q ss_pred CCCC-CCCcccccccccCCHHHHHHHHHHhhcCeEeecCCCCCCCCC-CCCCCcCC
Q 022933 236 CASN-PGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPV-PPPECLAG 289 (290)
Q Consensus 236 c~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~~ 289 (290)
|... +..||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.++
T Consensus 234 c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 234 CADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred cCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 9754 467999999999999999999999999999999999999999 89999765
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=5.3e-83 Score=583.21 Aligned_cols=256 Identities=61% Similarity=1.182 Sum_probs=241.2
Q ss_pred CcccccCceeeecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecCC-CCC
Q 022933 27 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-ENV 105 (290)
Q Consensus 27 ~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-p~~ 105 (290)
+.+|.++|.++|+++|+++.++|+.|+|+||+.+ ||+|.||+.|+||+||||||||+|+++|+||||||++++ |.
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s---~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~- 78 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSS---GSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDN- 78 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCC---CccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCC-
Confidence 4679999999999999999888889999999988 999999999999999999999998889999999999998 77
Q ss_pred CCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCC--CCCC
Q 022933 106 RDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFP 183 (290)
Q Consensus 106 ~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~--~~~P 183 (290)
++|||||++|+.+|+|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+. .+||
T Consensus 79 ~~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 158 (263)
T cd02176 79 HDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYP 158 (263)
T ss_pred CCeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998654 6799
Q ss_pred CCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEEeeecC-CCCCcCCCCC-CCcccccccccCCHHHHHHHH
Q 022933 184 MNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-PGPANCASNP-GNWWEANNYQALTAMEARRYR 261 (290)
Q Consensus 184 ~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~-~~~~~c~~~~-~~~~~~~~~~~l~~~~~~~~~ 261 (290)
+++||+|++|||+||+|||+||++|+||+++||+|.|++|+|+||.+ +....|.... ..||+.+.+++|+++|+++|+
T Consensus 159 ~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (263)
T cd02176 159 SSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAME 238 (263)
T ss_pred ccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHH
Confidence 77999999999999999999999999999999999999999999998 4445675443 579999999999999999999
Q ss_pred HHhhcCeEeecCCCCCCCCCCCCCC
Q 022933 262 WVRLNHMIYDYCTDKSRYPVPPPEC 286 (290)
Q Consensus 262 ~~~~~~~~y~yc~d~~r~~~~~~ec 286 (290)
|||+||||||||+|++|||.+||||
T Consensus 239 ~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 239 WVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.6e-43 Score=313.38 Aligned_cols=174 Identities=28% Similarity=0.542 Sum_probs=152.2
Q ss_pred eeecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecCCCCCCCeEEEEEeC
Q 022933 36 VTWSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLG 115 (290)
Q Consensus 36 ~~w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~p~~~~EID~E~lG 115 (290)
.+...++|... + +.|+|.|++. ++|++|.|+++|+||+||||||+|.+ +|+||||||++++ ++|||||++|
T Consensus 12 ~~~~~~~~~~~-~-~~~~l~~~~~--~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~---~gEIDIE~~G 82 (203)
T cd02183 12 WTVTSGTVDYD-D-DGASLTIPKR--GDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD---LDEIDWEWVG 82 (203)
T ss_pred cEecCCcEeEC-C-CeEEEEEcCC--CCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC---CCEEEEEecC
Confidence 34567888885 3 3599999997 23999999999999999999999998 8999999999875 7999999999
Q ss_pred CCCCCceEEEeeeecCCCC---CcceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCC---CCCCCCCCCce
Q 022933 116 NRTGQPYTVQTNIYANGKG---DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG---RAPFPMNQPMG 189 (290)
Q Consensus 116 ~~~g~p~~~~tnv~~~g~~---~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~---~~~~P~~~Pm~ 189 (290)
++ +..+|+|++.+|.. ++++.+.++++++++||+|+|+|+|++|+|||||++++++++.+ ...|| ++||+
T Consensus 83 ~~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~ 158 (203)
T cd02183 83 GD---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMR 158 (203)
T ss_pred CC---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcE
Confidence 64 56899999977654 35567778888889999999999999999999999999998643 26799 89999
Q ss_pred EEEEEeeCCC---------ccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 190 VYSTLWEADD---------WATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 190 l~lnlw~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
|++|+|+||+ || ||. +||+.+||+|.|++|||.
T Consensus 159 l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~ 200 (203)
T cd02183 159 LQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVT 200 (203)
T ss_pred EEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEE
Confidence 9999999985 99 774 999999999999999997
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1.7e-39 Score=288.97 Aligned_cols=176 Identities=30% Similarity=0.602 Sum_probs=151.6
Q ss_pred eeeecCCCeEEecCCcEEEEEeccCC----CceeeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecCC---CCCCC
Q 022933 35 KVTWSDAHLRQIEGGRAIQLVLDQNS----AFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---ENVRD 107 (290)
Q Consensus 35 ~~~w~~~~v~~~~~G~~l~L~ld~~s----~yts~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---p~~~~ 107 (290)
.++|.++||.+. +| .|+|++.+.. .|+||+|.|+.+|+||+||||||+|.+ +|+||||||++.+ +. ++
T Consensus 26 ~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~-~~ 100 (212)
T cd02175 26 NCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDP-HD 100 (212)
T ss_pred eeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCC-CC
Confidence 367889999985 56 5999987653 689999999999999999999999988 8999999999753 33 79
Q ss_pred eEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCC
Q 022933 108 ELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQP 187 (290)
Q Consensus 108 EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~P 187 (290)
|||||++|++. ..+++|+|.++.++.+..+.++++++++||+|+|+|+|++|+|||||++++++...+ ..+| ++|
T Consensus 101 EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~-~~~p-~~p 175 (212)
T cd02175 101 EIDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD-PNIP-DTP 175 (212)
T ss_pred EEEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc-CCCC-CCC
Confidence 99999999763 468889998877767777788889999999999999999999999999999998643 4688 899
Q ss_pred ceEEEEEeeCC---CccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 188 MGVYSTLWEAD---DWATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 188 m~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
|+|++|+|.|+ +|+ |. +|. ..|+.|+||+|||.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 53 676 88999999999986
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=8.4e-36 Score=258.04 Aligned_cols=175 Identities=34% Similarity=0.646 Sum_probs=149.5
Q ss_pred cCceeeecCCCeEEecCCcEEEEEeccCC--CceeeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecCC--CCCCC
Q 022933 32 EDFKVTWSDAHLRQIEGGRAIQLVLDQNS--AFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRD 107 (290)
Q Consensus 32 ~~f~~~w~~~~v~~~~~G~~l~L~ld~~s--~yts~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~--p~~~~ 107 (290)
+.++++|+++||.+. +|+.|.|++++.. .++||+|.|+..++||+||+|||++.+ +|+|+||||.+.+ |. ++
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~-~~ 78 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPD-GG 78 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTT-TE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccc-hh
Confidence 678899999999995 5557999998844 677999999999999999999999887 8999999997633 55 89
Q ss_pred eEEEEEeCCCCCCceEEEeeeecCCCCCc--ceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCC--CCCC
Q 022933 108 ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFP 183 (290)
Q Consensus 108 EID~E~lG~~~g~p~~~~tnv~~~g~~~~--e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~--~~~P 183 (290)
|||||++|+... .+++|+|..+.+.. +.++.+.+++.++||+|+|+|+|++|+|||||++++++..... .++|
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999998644 59999998887765 5677778899999999999999999999999999999987643 3589
Q ss_pred CCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEE
Q 022933 184 MNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFD 224 (290)
Q Consensus 184 ~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 224 (290)
+..||+|.+++|.|++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 5589999999999998884433 68888886
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.2e-35 Score=269.92 Aligned_cols=179 Identities=20% Similarity=0.250 Sum_probs=137.5
Q ss_pred CCCeEEecCCcEEEEEeccCC--------CceeeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecCC-CCCCCeEE
Q 022933 40 DAHLRQIEGGRAIQLVLDQNS--------AFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-ENVRDELD 110 (290)
Q Consensus 40 ~~~v~~~~~G~~l~L~ld~~s--------~yts~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-p~~~~EID 110 (290)
++|+.+ .+| .|.|+..+.. .|+||+|.||+.|+|||||||||+|.+ . .+|||||++.+ +. ++|||
T Consensus 57 ~~nv~v-~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~-~gEID 130 (258)
T cd02178 57 ADNVSV-EDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDS-TTEID 130 (258)
T ss_pred cCCeEE-ECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCC-CCcEE
Confidence 567776 467 5888886543 589999999999999999999999976 4 58999999975 45 89999
Q ss_pred -EEEeCCCC--CCceEEEeeeecCCCC-----Cc---ceeEecCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEeCCC
Q 022933 111 -FEFLGNRT--GQPYTVQTNIYANGKG-----DR---EQRVNLWFDPAADYHLYTILWN-HHHIVFYVDDVPIRVYKNSG 178 (290)
Q Consensus 111 -~E~lG~~~--g~p~~~~tnv~~~g~~-----~~---e~~~~l~fd~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 178 (290)
||++|+.. ..+..+|+++|..+.+ .+ .......++.+++||+|+|+|+ |++|+|||||++++++.+.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 89999763 2245788886532221 11 1234455667899999999999 99999999999999998743
Q ss_pred C-CCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 179 R-APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 179 ~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
. ...||++||+|+||+++|| |+...+.. ..-...|..|.||||||.
T Consensus 211 ~~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 ITDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cCcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 4578899999999999998 98210111 122345999999999986
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3.8e-34 Score=252.13 Aligned_cols=175 Identities=34% Similarity=0.569 Sum_probs=146.9
Q ss_pred eeeecCCCeEEecCCcEEEEEeccCC---CceeeEEEE-eeeeEeeEEEEEEEecCCCCCceEEEEEeecCC---CCCCC
Q 022933 35 KVTWSDAHLRQIEGGRAIQLVLDQNS---AFLGCGFAS-KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---ENVRD 107 (290)
Q Consensus 35 ~~~w~~~~v~~~~~G~~l~L~ld~~s---~yts~~i~S-k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---p~~~~ 107 (290)
...|+++||.+.++| .|.|++.+.+ .|+||+|.| ++.|+||+||+|||++.+ .|+|+||||++.+ |. .+
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~-~~ 99 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPD-GG 99 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCC-CC
Confidence 357889999996546 5999987754 589999999 999999999999999988 8999999999987 55 89
Q ss_pred eEEEEEeCCCCCCceEEEeeeecCCCC-----CcceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCC
Q 022933 108 ELDFEFLGNRTGQPYTVQTNIYANGKG-----DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPF 182 (290)
Q Consensus 108 EID~E~lG~~~g~p~~~~tnv~~~g~~-----~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~ 182 (290)
|||||++|++ +..+++++|..+.+ .......+++++.++||+|+|+|+|+.|+|||||++++++.+. .
T Consensus 100 EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~----~ 172 (210)
T cd00413 100 EIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ----V 172 (210)
T ss_pred eEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC----C
Confidence 9999999976 44688888766543 2334455666678999999999999999999999999998753 6
Q ss_pred CCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 183 PMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 183 P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
| ++||+|+||+|.+++|+ +. .+....|..|.|++|||.
T Consensus 173 p-~~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 P-DDPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred C-CCCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEEC
Confidence 7 89999999999999988 22 345678999999999983
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=9.3e-34 Score=254.93 Aligned_cols=179 Identities=25% Similarity=0.421 Sum_probs=144.8
Q ss_pred eeecCCCeEEecCCcEEEEEeccCC-------CceeeEEEE--eeeeEeeEEEEEEEecCCCCCceEEEEEeecCC----
Q 022933 36 VTWSDAHLRQIEGGRAIQLVLDQNS-------AFLGCGFAS--KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT---- 102 (290)
Q Consensus 36 ~~w~~~~v~~~~~G~~l~L~ld~~s-------~yts~~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---- 102 (290)
..+.++|+.+ .+| .|.|+.++.+ .|+||+|.| ++.|+|||||||||+|.+ +|+||||||++.+
T Consensus 33 ~~~~~~nv~v-~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 4567889887 466 5888875532 689999999 899999999999999988 8999999999875
Q ss_pred --CCCCCeEE-EEEeCCCCCCceEEEeeeecCCCC----CcceeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 022933 103 --ENVRDELD-FEFLGNRTGQPYTVQTNIYANGKG----DREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVY 174 (290)
Q Consensus 103 --p~~~~EID-~E~lG~~~g~p~~~~tnv~~~g~~----~~e~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 174 (290)
|. .+||| ||++|+. +..+++++|..+.. .....+.+.. +..++||+|+++|+|++|+|||||++++++
T Consensus 109 ~w~~-~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~ 184 (235)
T cd08023 109 GWPA-SGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTY 184 (235)
T ss_pred CCCC-CCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEE
Confidence 33 68999 7999986 34688888876643 2334455554 688999999999999999999999999999
Q ss_pred eCCCC---CCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 175 KNSGR---APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 175 ~~~~~---~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
++... ..+|+++||+|+||+++|++|+ |.. ......|..|.||+|||.
T Consensus 185 ~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 185 TNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 87543 2356689999999999999999 431 234567999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=3.8e-31 Score=243.16 Aligned_cols=173 Identities=23% Similarity=0.301 Sum_probs=131.2
Q ss_pred CCCeEEecCCcEEEEEeccCC----------------CceeeEEEEeeeeEeeEEEEEEEecC-CCCCceEEEEEeecCC
Q 022933 40 DAHLRQIEGGRAIQLVLDQNS----------------AFLGCGFASKRQYLFGRVSMKIKLVP-GDSAGTVTAFYMNSNT 102 (290)
Q Consensus 40 ~~~v~~~~~G~~l~L~ld~~s----------------~yts~~i~Sk~~~~yG~~eariKlp~-g~s~G~v~AFwl~~~~ 102 (290)
++|+.+ .+| .|.|+..+.. .|+||+|.||.+|+|||||||||+++ + +|+||||||+++.
T Consensus 43 ~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467766 677 5888876541 48999999999999999999999865 6 8999999999851
Q ss_pred ---------CCCCCeEE-EEEeCCCC---CC----ceEEEeeeecCCCCC--c--------ceeEecCCCCCCCcEEEEE
Q 022933 103 ---------ENVRDELD-FEFLGNRT---GQ----PYTVQTNIYANGKGD--R--------EQRVNLWFDPAADYHLYTI 155 (290)
Q Consensus 103 ---------p~~~~EID-~E~lG~~~---g~----p~~~~tnv~~~g~~~--~--------e~~~~l~fd~~~dfHtY~i 155 (290)
|. ++||| ||..|... ++ ...+|++++.++.+. + .+.+.+++|++++||+|+|
T Consensus 119 ~~~~~~~gwp~-~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v 197 (269)
T cd02177 119 DYSVANEGEVV-YSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGC 197 (269)
T ss_pred CCCcccCCCCC-CCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEE
Confidence 44 89999 78887541 22 235676666555431 1 1235567889999999999
Q ss_pred EEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCC---------CccccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 156 LWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEAD---------DWATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 156 ~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
+|+|++|+|||||++++++.+. +. ++||.+.+++-.+. .|+ |+. .+.+..|..|+||+|||.
T Consensus 198 ~W~~~~i~~yvDg~~~~~~~~~----~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 198 NVNQDEIIWYVDGVEVGRKPNK----YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EEeCCEEEEEECCEEEEEEcCC----cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 9999999999999999999753 33 68888888875543 344 332 345678999999999996
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.98 E-value=1.7e-31 Score=248.34 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=129.4
Q ss_pred eeecCCCeEEecCCcEEEEEeccCC----CceeeEEEE--eeeeEeeEEEEEEEecCC-CCCceEEEEEeecCC------
Q 022933 36 VTWSDAHLRQIEGGRAIQLVLDQNS----AFLGCGFAS--KRQYLFGRVSMKIKLVPG-DSAGTVTAFYMNSNT------ 102 (290)
Q Consensus 36 ~~w~~~~v~~~~~G~~l~L~ld~~s----~yts~~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~~------ 102 (290)
..+.++|+.+ .+| .|.|+..+.. .|+||+|.| |+.|+|||||||||||.+ ...|+||||||+++.
T Consensus 36 q~Y~~~nv~v-~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT-ING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe-cCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 3456788877 577 5888876542 699999999 788999999999999973 237999999999853
Q ss_pred -------CC-----CCCeEE-EEEeCCCC-CCceE---E----------------EeeeecC------CC-CCcce-e--
Q 022933 103 -------EN-----VRDELD-FEFLGNRT-GQPYT---V----------------QTNIYAN------GK-GDREQ-R-- 139 (290)
Q Consensus 103 -------p~-----~~~EID-~E~lG~~~-g~p~~---~----------------~tnv~~~------g~-~~~e~-~-- 139 (290)
|. ..+||| ||.+|.+. +.... + |..+|.. .. ++..+ .
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 21 038999 99998542 11111 1 1111211 00 11101 0
Q ss_pred --EecCC----CCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEeCCCC--------CCCCCCCCceEEEEEeeCCCc
Q 022933 140 --VNLWF----DPAADYHLYTILWNH-----HHIVFYVDDVPIRVYKNSGR--------APFPMNQPMGVYSTLWEADDW 200 (290)
Q Consensus 140 --~~l~f----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--------~~~P~~~Pm~l~lnlw~gg~W 200 (290)
..+.. ...++||||+|+|+| ++|+|||||+++++++.... .++| ++||+|+||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEecccc
Confidence 01111 135789999999999 89999999999999986421 2355 8999999999999999
Q ss_pred cccCCCcccCCCCCCeEEEEeEEEEe
Q 022933 201 ATRGGLEKIDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 201 at~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (290)
+ |. +.+-...|..|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 8 42 2344567999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.98 E-value=2.2e-31 Score=243.65 Aligned_cols=182 Identities=16% Similarity=0.123 Sum_probs=128.8
Q ss_pred eecCCCeEEecCCcEEEEEeccC--CCceeeEEEEeeee--Ee----eEEEEEEEecCCC---CCceEEEEEeecCC---
Q 022933 37 TWSDAHLRQIEGGRAIQLVLDQN--SAFLGCGFASKRQY--LF----GRVSMKIKLVPGD---SAGTVTAFYMNSNT--- 102 (290)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~ld~~--s~yts~~i~Sk~~~--~y----G~~eariKlp~g~---s~G~v~AFwl~~~~--- 102 (290)
+.+++|+.+..+| .|.|+..+. ..|+||+|.|+.++ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4557888885477 588887655 27999999997654 33 4899999999742 37999999999963
Q ss_pred -----CCCCCeEE-EEEeCCCCCCceEEEeeeecC--CCCCcceeEec--CCCCCCCcEEEEEEEcC-----CeEEEEEc
Q 022933 103 -----ENVRDELD-FEFLGNRTGQPYTVQTNIYAN--GKGDREQRVNL--WFDPAADYHLYTILWNH-----HHIVFYVD 167 (290)
Q Consensus 103 -----p~~~~EID-~E~lG~~~g~p~~~~tnv~~~--g~~~~e~~~~l--~fd~~~dfHtY~i~Wtp-----~~I~fyVD 167 (290)
|. .+||| ||..|.. +...++.++.. +...++..... .....++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~-~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPA-CGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCc-cceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 44 68999 8999864 33344433322 11111111000 11245799999999997 99999999
Q ss_pred CeeEEEEeCCCC-----CCCCCCCCceEEEEEeeCCCccccCCCcc-cCCCCCCeEEEEeEEEEe
Q 022933 168 DVPIRVYKNSGR-----APFPMNQPMGVYSTLWEADDWATRGGLEK-IDWSKAPFYAYYRDFDIE 226 (290)
Q Consensus 168 G~~vr~~~~~~~-----~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-~d~~~~Pf~a~~~~~~v~ 226 (290)
|+++++++.... .+.|+++||+|+||+++||+|+ |... ..-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 999999976421 2234589999999999999998 3211 112346899999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.97 E-value=3.1e-29 Score=236.89 Aligned_cols=137 Identities=25% Similarity=0.349 Sum_probs=105.7
Q ss_pred ceeeEEEE--eeeeEeeEEEEEEEecCCCCCceEEEEEeecCC------CCCCCeEE-EEEeCCCCCCc-------eEEE
Q 022933 62 FLGCGFAS--KRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT------ENVRDELD-FEFLGNRTGQP-------YTVQ 125 (290)
Q Consensus 62 yts~~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~------p~~~~EID-~E~lG~~~g~p-------~~~~ 125 (290)
|+||+|.| |++|+|||||||||||.| .|+||||||++.+ |. .+||| ||..|+....+ ..++
T Consensus 99 ~~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~-sGEIDImE~~Gn~~~~~~~~~~g~~~v~ 175 (330)
T cd08024 99 VMSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPR-SGEIDIMESRGNRPLYDGGEAIGINSVG 175 (330)
T ss_pred eEEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCC-CCcEEEEEEeCCCcccccccccCcceEE
Confidence 89999999 688999999999999999 8999999999975 55 79999 99999764221 1344
Q ss_pred eeeecCCC-C-C--cc---eeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCC--------------------
Q 022933 126 TNIYANGK-G-D--RE---QRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG-------------------- 178 (290)
Q Consensus 126 tnv~~~g~-~-~--~e---~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------- 178 (290)
.++|.... . + +. .......+.+++||+|+|+|+|++|+|||||++++++....
T Consensus 176 ~tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~ 255 (330)
T cd08024 176 STLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAG 255 (330)
T ss_pred EEEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccc
Confidence 44543221 1 1 11 11112245678999999999999999999999999998520
Q ss_pred -CCCCCCCCCceEEEEEeeCCCcc
Q 022933 179 -RAPFPMNQPMGVYSTLWEADDWA 201 (290)
Q Consensus 179 -~~~~P~~~Pm~l~lnlw~gg~Wa 201 (290)
....||++|+||+|||++||.|.
T Consensus 256 ~~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 256 GGKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cCcCCCCCCCEEEEEEEEecCCCC
Confidence 03468999999999999999876
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=8e-29 Score=233.20 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=101.5
Q ss_pred ceeeEEEEe--eeeEeeEEEEEEEecCCCCCceEEEEEeecCC-------CCCCCeEE-EEEeCCCC----CC---ceEE
Q 022933 62 FLGCGFASK--RQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT-------ENVRDELD-FEFLGNRT----GQ---PYTV 124 (290)
Q Consensus 62 yts~~i~Sk--~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-------p~~~~EID-~E~lG~~~----g~---p~~~ 124 (290)
|+||+|.|| ++|+|||+|+|||||.| .|+||||||++.+ |. .+||| ||..||.. |. ...+
T Consensus 96 ~~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~-sGEIDImE~~Gn~~~~~~g~~~~~~~l 172 (321)
T cd02179 96 VVSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYA-SGQIRIAFARGNAVLRADGTDIGGKKL 172 (321)
T ss_pred eeeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCC-CCeEEEEEeCCCCccccCCceeccceE
Confidence 889999995 78999999999999999 8999999999975 34 79999 89999862 11 1234
Q ss_pred EeeeecCCCC-Ccc---eeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCC------------------CCC
Q 022933 125 QTNIYANGKG-DRE---QRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR------------------APF 182 (290)
Q Consensus 125 ~tnv~~~g~~-~~e---~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~------------------~~~ 182 (290)
|...+..... .+. .......+.+++||+|+|+|+|++|+|||||++++++..... ...
T Consensus 173 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~a 252 (321)
T cd02179 173 YGGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMA 252 (321)
T ss_pred EcccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccC
Confidence 4333322111 111 111112356789999999999999999999999999985310 346
Q ss_pred CCCCCceEEEEEeeCC
Q 022933 183 PMNQPMGVYSTLWEAD 198 (290)
Q Consensus 183 P~~~Pm~l~lnlw~gg 198 (290)
||++|++|+|||++||
T Consensus 253 PFD~~FyliLNlAVGG 268 (321)
T cd02179 253 PFDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCCCeEEEEEEEecC
Confidence 9999999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=220.78 Aligned_cols=161 Identities=24% Similarity=0.438 Sum_probs=136.9
Q ss_pred ceeeecCCCeEEecCCcEEEEEeccCC----CceeeEEEEeee--eEeeEEEEEEEecCCCCCceEEEEEeecC---CCC
Q 022933 34 FKVTWSDAHLRQIEGGRAIQLVLDQNS----AFLGCGFASKRQ--YLFGRVSMKIKLVPGDSAGTVTAFYMNSN---TEN 104 (290)
Q Consensus 34 f~~~w~~~~v~~~~~G~~l~L~ld~~s----~yts~~i~Sk~~--~~yG~~eariKlp~g~s~G~v~AFwl~~~---~p~ 104 (290)
++++|...++.+..+| .|.|.+++.- .|++|+++|..+ |+||++|+|||+|.+ .|+||||||++. +..
T Consensus 72 ~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 72 KNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred cccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 3357877788886555 7888887643 799999999766 999999999999977 999999999997 445
Q ss_pred CCCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCC
Q 022933 105 VRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFP 183 (290)
Q Consensus 105 ~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P 183 (290)
+++|||+|++|+.+. +..+|+|++.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++... ...|
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p--~~~~ 225 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP--DYIP 225 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc--ccCc
Confidence 589999999997654 346999999999888877777777 888999999999999999999999999999865 3457
Q ss_pred CCCCceEEEEEeeCCCcc
Q 022933 184 MNQPMGVYSTLWEADDWA 201 (290)
Q Consensus 184 ~~~Pm~l~lnlw~gg~Wa 201 (290)
..||++++|+|.++.+.
T Consensus 226 -~~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 226 -QIPFYVLVNLWMGGYAG 242 (355)
T ss_pred -CCcceeEEeecccCccC
Confidence 89999999999998665
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.84 E-value=1.5e-21 Score=136.12 Aligned_cols=50 Identities=56% Similarity=1.224 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccccCCHHHHHHHHHHhhcCeEeecCCCCCCCCCC-CCCC
Q 022933 236 CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVP-PPEC 286 (290)
Q Consensus 236 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 286 (290)
|++++..||+++.++ ||++|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 655667899998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.71 E-value=1.1e-16 Score=156.55 Aligned_cols=192 Identities=20% Similarity=0.330 Sum_probs=129.6
Q ss_pred cCCCeEEecCCcEEEEEeccCC----CceeeEEEE--eeeeEeeEEEEEEEecCC-CCCceEEEEEeecCC---------
Q 022933 39 SDAHLRQIEGGRAIQLVLDQNS----AFLGCGFAS--KRQYLFGRVSMKIKLVPG-DSAGTVTAFYMNSNT--------- 102 (290)
Q Consensus 39 ~~~~v~~~~~G~~l~L~ld~~s----~yts~~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~~--------- 102 (290)
+++.|.. ++| .|.|++++.. .|.||.++| |+-|+-|++|++++||.. +..|+|||||++++-
T Consensus 159 ~p~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast 236 (504)
T PF03935_consen 159 DPDAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAST 236 (504)
T ss_pred cCCCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCcccccccc
Confidence 4555544 566 6999998643 799999999 788899999999999853 367999999998751
Q ss_pred ----------------CC--------------------------------CCCeEE-EEEeCCCC-CCce---EEEee--
Q 022933 103 ----------------EN--------------------------------VRDELD-FEFLGNRT-GQPY---TVQTN-- 127 (290)
Q Consensus 103 ----------------p~--------------------------------~~~EID-~E~lG~~~-g~p~---~~~tn-- 127 (290)
|+ ...||| ||...... +.+. .+|..
T Consensus 237 ~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~ 316 (504)
T PF03935_consen 237 DGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPF 316 (504)
T ss_pred CceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccc
Confidence 10 136999 89764321 1011 12211
Q ss_pred ------------eecCCC-------CCc-ceeE----ec---CC--CCCCCcEEEEEEEcCC-----eEEEEEcCeeEEE
Q 022933 128 ------------IYANGK-------GDR-EQRV----NL---WF--DPAADYHLYTILWNHH-----HIVFYVDDVPIRV 173 (290)
Q Consensus 128 ------------v~~~g~-------~~~-e~~~----~l---~f--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~ 173 (290)
++.... |+. .|.+ .+ ++ ....+||+|++||.|+ .|+|+|||+++.+
T Consensus 317 d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twt 396 (504)
T PF03935_consen 317 DIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWT 396 (504)
T ss_pred ccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEE
Confidence 110000 010 1111 11 12 1347899999999864 8999999999999
Q ss_pred EeCCCC--------CCCCCCCCceEEEEEeeCCCccccCCCcccCCCC--CCeEEEEeEEEEeeecCCCCCcCCCC
Q 022933 174 YKNSGR--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK--APFYAYYRDFDIEGCPVPGPANCASN 239 (290)
Q Consensus 174 ~~~~~~--------~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~c~~~ 239 (290)
+..... ...| ..||+|++||....+|+ .+||.+ .|.+|.||+|||+.=.-...-.|.+.
T Consensus 397 i~a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~~~vgCDP~ 465 (504)
T PF03935_consen 397 INAEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDAINVGCDPP 465 (504)
T ss_pred EEhhhcCCCCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCCCeeeeCCC
Confidence 975422 3578 89999999999999997 367754 68899999999984322223557643
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.69 E-value=4.3e-16 Score=144.00 Aligned_cols=168 Identities=23% Similarity=0.349 Sum_probs=112.8
Q ss_pred CcccccCcee-----------e-------ecCCCeEEecCCcEEEEEeccCC------CceeeEEEEeeeeEeeEEEEEE
Q 022933 27 PATFLEDFKV-----------T-------WSDAHLRQIEGGRAIQLVLDQNS------AFLGCGFASKRQYLFGRVSMKI 82 (290)
Q Consensus 27 ~~~f~~~f~~-----------~-------w~~~~v~~~~~G~~l~L~ld~~s------~yts~~i~Sk~~~~yG~~eari 82 (290)
+.+|+|+|+. . .....+. .++| .|.|++|+.+ .++|++|.||+.|.+|++|+|+
T Consensus 10 g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~-v~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~ 87 (293)
T cd02181 10 GSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAY-VNSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADI 87 (293)
T ss_pred CCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeE-eeCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEh
Confidence 5689999882 1 1122333 3455 5999998753 5889999999999999999998
Q ss_pred -EecCCCCCceEEEEEeecCC-CCCCCeEE-EEEeCCCCCCceEEEee----eecCC--CC-------------Cccee-
Q 022933 83 -KLVPGDSAGTVTAFYMNSNT-ENVRDELD-FEFLGNRTGQPYTVQTN----IYANG--KG-------------DREQR- 139 (290)
Q Consensus 83 -Klp~g~s~G~v~AFwl~~~~-p~~~~EID-~E~lG~~~g~p~~~~tn----v~~~g--~~-------------~~e~~- 139 (290)
|||.+ .|+||||||++.+ |. .+||| ||.++.......++||. +-..+ .+ +....
T Consensus 88 ~~~P~g--~G~WPAfW~~g~~WP~-~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v 164 (293)
T cd02181 88 AHMPGG--CGTWPAFWTVGPNWPN-GGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGV 164 (293)
T ss_pred hhCCCC--CCccchhhhcCCCCCC-CCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCcee
Confidence 99998 8999999999887 77 89999 99998654433466654 11110 00 00111
Q ss_pred -------EecCCCCCCCcEEEEEEEcCCeEEEEEc---CeeEEEEeC-CCC-------CCCCCC---------CCceEEE
Q 022933 140 -------VNLWFDPAADYHLYTILWNHHHIVFYVD---DVPIRVYKN-SGR-------APFPMN---------QPMGVYS 192 (290)
Q Consensus 140 -------~~l~fd~~~dfHtY~i~Wtp~~I~fyVD---G~~vr~~~~-~~~-------~~~P~~---------~Pm~l~l 192 (290)
+-..|+ ..+=-.|++||+.+.|..+.= .+|--.... .+. ..|| . ++++|++
T Consensus 165 ~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVf 242 (293)
T cd02181 165 TSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVF 242 (293)
T ss_pred ecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcccCcccccCC-CCCCChhHhcccCEEEE
Confidence 111222 344579999999999987763 222211111 111 3455 3 7999999
Q ss_pred EEeeCCCcc
Q 022933 193 TLWEADDWA 201 (290)
Q Consensus 193 nlw~gg~Wa 201 (290)
|+-.=|+||
T Consensus 243 n~tfCGdwA 251 (293)
T cd02181 243 DTTFCGDWA 251 (293)
T ss_pred Eeecccccc
Confidence 999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=95.64 E-value=0.4 Score=38.35 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEE
Q 022933 146 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 225 (290)
Q Consensus 146 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (290)
+...||..++.|..+.+.+||||+++.+.........+...++. .|+.. ....+|...++.+||
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLF------IGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEE------ESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEE------EeecC----------CCCCceEEEEEEEEE
Confidence 35889999999999999999999988554321100101012222 23221 235689999999999
Q ss_pred ee
Q 022933 226 EG 227 (290)
Q Consensus 226 ~~ 227 (290)
..
T Consensus 147 ~~ 148 (157)
T PF13385_consen 147 YN 148 (157)
T ss_dssp ES
T ss_pred EC
Confidence 63
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.52 E-value=0.46 Score=41.67 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=52.0
Q ss_pred ceeeEEEEeee---eEee-EEEEEEEecCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCceEEEeeeecCCCCCcc
Q 022933 62 FLGCGFASKRQ---YLFG-RVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDRE 137 (290)
Q Consensus 62 yts~~i~Sk~~---~~yG-~~eariKlp~g~s~G~v~AFwl~~~~p~~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e 137 (290)
|.|+++-||+. -.+| +....+|+..| |..+-++.-+.. .--++|-. +..|+ |-.+. +|.+.+
T Consensus 16 w~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~---r~l~~lsv--n~sG~---LvA~L--~g~ss~- 81 (198)
T PF09264_consen 16 WGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSK---RYLPILSV--NESGS---LVAEL--EGQSSN- 81 (198)
T ss_dssp TTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSE---EEEEEEEE---TTS----EEEEE--TTS-S--
T ss_pred cccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCce---EEEEEEEE--cCCCC---EEEEE--ecCCCc-
Confidence 34888888653 2367 78888888876 555555543321 11111111 11111 11111 111111
Q ss_pred eeEecCCCCCCCcEEEEEEEcC--CeEEEEEcCeeEEEEe
Q 022933 138 QRVNLWFDPAADYHLYTILWNH--HHIVFYVDDVPIRVYK 175 (290)
Q Consensus 138 ~~~~l~fd~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 175 (290)
..+.+....-.+||.|.|...| ..-.|||||+.|++..
T Consensus 82 ~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 82 TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred EEEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 1122210012479999999977 8999999999999864
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=91.24 E-value=2.6 Score=35.66 Aligned_cols=100 Identities=15% Similarity=0.284 Sum_probs=55.2
Q ss_pred eeEEEEeeeeEeeEEEEEEEecCCCCCceEEEEEeecC--C-----CCCCCeEEEEEeCCCCCCceEEEeeeecCCCCCc
Q 022933 64 GCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSN--T-----ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDR 136 (290)
Q Consensus 64 s~~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~--~-----p~~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~ 136 (290)
++.|.|+..|.=..+++.+|+.++ | -.++++... . .. .-|+.+.--+.. .......+..
T Consensus 43 ~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~-gy~~~i~~~~~~---------~~~~~~~G~~ 108 (185)
T PF06439_consen 43 GGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNN-GYEFQIDNSGGG---------TGLPNSTGSL 108 (185)
T ss_dssp S--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGT-SEEEEEE-TTTC---------STTTTSTTSB
T ss_pred cceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcce-EEEEEEECCCCc---------cCCCCccceE
Confidence 677888888887899999998543 2 334444333 1 12 345543321111 0000111110
Q ss_pred c------ee-EecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCC
Q 022933 137 E------QR-VNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 177 (290)
Q Consensus 137 e------~~-~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 177 (290)
. .. ......+..+||++.|.-..++|+.+|||++|.++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 109 YDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 00 00112256799999999999999999999999998864
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=90.46 E-value=8.3 Score=31.27 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEE
Q 022933 146 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 223 (290)
Q Consensus 146 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (290)
+...||...+-++. .+|++||||+++.+.... ..+...|+.+-.... . ++ ....+|.-.++.+
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~-----~--~~-----~~~~~f~G~Idev 123 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRIL-----L--GG-----AGGENFSGRLDEV 123 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeecc-----C--CC-----CCCCCceEEeeEE
Confidence 34789999999988 799999999988654321 112123333221111 0 11 1235799999999
Q ss_pred EEeeec
Q 022933 224 DIEGCP 229 (290)
Q Consensus 224 ~v~~c~ 229 (290)
||..+.
T Consensus 124 riy~~a 129 (133)
T smart00560 124 RVYNRA 129 (133)
T ss_pred EEeccc
Confidence 998664
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=88.24 E-value=10 Score=32.76 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecC-C-CCCCCcEEEE
Q 022933 77 RVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLW-F-DPAADYHLYT 154 (290)
Q Consensus 77 ~~eariKlp~g~s~G~v~AFwl~~~~p~~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~-f-d~~~dfHtY~ 154 (290)
.+.+.+|..+. +.|+.-++.-. + . ..++-++..|.. + .+..... +..+..+..... . -....||..+
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~-~~~l~v~l~g~~---~-~~~~~~~--~~~g~~~~~~f~~~~l~dg~WH~la 123 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--N-VRQFGLEVDGRA---N-TLLLRYQ--GVDGKQHTVSFRNLPLADGQWHKLA 123 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--C-cEEEEEEEeCCc---c-EEEEEEC--CCCCcEEEEeecCCccccCCceEEE
Confidence 36777777643 35665555432 1 2 345555655532 1 2332221 222222222111 1 1356799999
Q ss_pred EEEcCCeEEEEEcCeeEEEEe
Q 022933 155 ILWNHHHIVFYVDDVPIRVYK 175 (290)
Q Consensus 155 i~Wtp~~I~fyVDG~~vr~~~ 175 (290)
+.+..+++++|||++++.+..
T Consensus 124 l~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 124 LSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEEeCCEEEEEECCcccccee
Confidence 999999999999999987754
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=83.50 E-value=5.6 Score=36.21 Aligned_cols=78 Identities=12% Similarity=0.236 Sum_probs=47.7
Q ss_pred EEEEEEEecCCC-----CCceEEEEEeecCC-C--------------CCCCeEE-EEEeCCCCCCceEEEeeeec-CCC-
Q 022933 77 RVSMKIKLVPGD-----SAGTVTAFYMNSNT-E--------------NVRDELD-FEFLGNRTGQPYTVQTNIYA-NGK- 133 (290)
Q Consensus 77 ~~eariKlp~g~-----s~G~v~AFwl~~~~-p--------------~~~~EID-~E~lG~~~g~p~~~~tnv~~-~g~- 133 (290)
-|-.++++|... ...=.||+||++.. | .-.+|+| ||.|... +. .+-+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 477788888731 23568999999864 1 1289999 9999754 33 44444443 332
Q ss_pred -----CCcceeEecCCCCCCCcEEEEEEEcCC
Q 022933 134 -----GDREQRVNLWFDPAADYHLYTILWNHH 160 (290)
Q Consensus 134 -----~~~e~~~~l~fd~~~dfHtY~i~Wtp~ 160 (290)
++....+. .|++..-+++|.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2677888888888643
No 24
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=81.23 E-value=36 Score=29.65 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEE
Q 022933 146 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 223 (290)
Q Consensus 146 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (290)
....||...+.|+ ..++.+||||+++.+-.-.....++ ....|.|.- .--.-||. .+ ....|.-.++.|
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~--~~g~l~lG~----~q~~~gg~--~~-~~~~f~G~I~~v 158 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVG--PGGSIILGQ----EQDSYGGG--FD-ATQSFVGEISDV 158 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEEC--CCCeEEEee----cccCCCCC--CC-CCcceEEEEcee
Confidence 5678999999997 5579999999987433211001122 122333332 11111343 33 235688999999
Q ss_pred EEe
Q 022933 224 DIE 226 (290)
Q Consensus 224 ~v~ 226 (290)
+|.
T Consensus 159 ~iw 161 (201)
T cd00152 159 NMW 161 (201)
T ss_pred EEE
Confidence 884
No 25
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=80.78 E-value=21 Score=31.27 Aligned_cols=75 Identities=15% Similarity=0.291 Sum_probs=45.6
Q ss_pred ecCCCCCCCcEEEEE--EEcC---CeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCC
Q 022933 141 NLWFDPAADYHLYTI--LWNH---HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAP 215 (290)
Q Consensus 141 ~l~fd~~~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P 215 (290)
.+.......||.+.| .|.+ ..|..++||+++..++.. ..++.....++-+.|.-.+ |.+..+. .+
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~~--~~----- 214 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPNE--SD----- 214 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC----S-----
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCcc--cc-----
Confidence 333345588999987 5764 689999999999888763 3344236677888887543 3321111 11
Q ss_pred eEEEEeEEEE
Q 022933 216 FYAYYRDFDI 225 (290)
Q Consensus 216 f~a~~~~~~v 225 (290)
-...||+|++
T Consensus 215 ~~vy~D~v~~ 224 (224)
T PF14099_consen 215 TQVYYDNVRI 224 (224)
T ss_dssp S-EEEEEEE-
T ss_pred cEEEeccccC
Confidence 1188888875
No 26
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=79.46 E-value=43 Score=29.39 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEE
Q 022933 146 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 223 (290)
Q Consensus 146 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (290)
....||...+.|+ ..++.+||||+++.. .... ...+...+-.|+|.-- -+.+ ||. .+ ....|.-.+++|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~~~-~g~~i~~~G~lvlGq~-qd~~---gg~--f~-~~~~f~G~i~~v 158 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-KGLA-KGYTVKPGGSIILGQE-QDSY---GGG--FD-ATQSFVGEIGDL 158 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-cccc-CCcEECCCCEEEEEec-ccCC---CCC--CC-CCcceeEEEeee
Confidence 4578999999997 457999999998621 1110 1111112233444431 1222 342 33 245688999999
Q ss_pred EEe
Q 022933 224 DIE 226 (290)
Q Consensus 224 ~v~ 226 (290)
+|.
T Consensus 159 ~iw 161 (206)
T smart00159 159 NMW 161 (206)
T ss_pred EEe
Confidence 884
No 27
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=75.49 E-value=57 Score=28.78 Aligned_cols=133 Identities=14% Similarity=0.273 Sum_probs=67.2
Q ss_pred eEeeEEEEEEEecCCCCCceEEEEEeecCCC-C--------CCCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecC
Q 022933 73 YLFGRVSMKIKLVPGDSAGTVTAFYMNSNTE-N--------VRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLW 143 (290)
Q Consensus 73 ~~yG~~eariKlp~g~s~G~v~AFwl~~~~p-~--------~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~ 143 (290)
..-|.+-++.|.... . -.-|++-.+++. . ..+++=+|+.+...+.-+...+..-..+ .
T Consensus 32 L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~-----~----- 98 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG-----G----- 98 (190)
T ss_dssp -SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S-----E-----
T ss_pred ccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc-----c-----
Confidence 445667777776443 3 344555555441 1 1236668888766443333333211110 0
Q ss_pred CCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEe
Q 022933 144 FDPAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYR 221 (290)
Q Consensus 144 fd~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (290)
.-....||+-++.=+ ..+..+|+||+.+.++.... ..|-.+-|- .=++-.|+- .|+|. ...||.-.++
T Consensus 99 ~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~-~~Fis~i~~--~n~~~iG~t--~R~g~-----~~y~f~G~I~ 168 (190)
T PF02973_consen 99 YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS-GNFISDIPG--LNSVQIGGT--NRAGS-----NAYPFNGTID 168 (190)
T ss_dssp ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT-SS-GGGSTT----EEEESSE--EETTE-----EES--EEEEE
T ss_pred ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc-ccHhhcCcC--CceEEEcce--EeCCC-----ceecccceEE
Confidence 012346888888776 67899999998888876542 222111110 111122331 23342 3469999999
Q ss_pred EEEEeee
Q 022933 222 DFDIEGC 228 (290)
Q Consensus 222 ~~~v~~c 228 (290)
+++|+.+
T Consensus 169 ~l~iYn~ 175 (190)
T PF02973_consen 169 NLKIYNR 175 (190)
T ss_dssp EEEEESS
T ss_pred EEEEEcC
Confidence 9999855
No 28
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=65.65 E-value=67 Score=25.54 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred EeeEEEEEEEecCCCCCceEEEEEeecCCCCCCCeEEEEEeCCCCCCceEEEeeeecCCCCCcceeEecCC-CCCCCcEE
Q 022933 74 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHL 152 (290)
Q Consensus 74 ~yG~~eariKlp~g~s~G~v~AFwl~~~~p~~~~EID~E~lG~~~g~p~~~~tnv~~~g~~~~e~~~~l~f-d~~~dfHt 152 (290)
....+++++|.... .|+. |++.+.. . .+.+-+|... | .++..+- .+ .....+.... -....||.
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~~-~-~~~~~l~l~~---g---~l~~~~~-~g--~~~~~~~~~~~v~dg~Wh~ 84 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQN-G-GDFLALELED---G---RLVLRYD-LG--SGSLVLSSKTPLNDGQWHS 84 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCCC-C-CCEEEEEEEC---C---EEEEEEc-CC--cccEEEEccCccCCCCEEE
Confidence 34457777777654 5655 3333321 2 4555566553 2 2333222 12 1222222221 23467999
Q ss_pred EEEEEcCCeEEEEEcCeeEEEE
Q 022933 153 YTILWNHHHIVFYVDDVPIRVY 174 (290)
Q Consensus 153 Y~i~Wtp~~I~fyVDG~~vr~~ 174 (290)
..|.+..+.++.+|||.+..+.
T Consensus 85 v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 85 VSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEEECCCEEEEEECCccEEee
Confidence 9999999999999999854333
No 29
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=64.04 E-value=63 Score=24.68 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEEEE
Q 022933 146 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 225 (290)
Q Consensus 146 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (290)
....||+-.|.-....++..||+............ ..-+...-.++.||.-...... ..-....|.--+++++|
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~----~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS----SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT----HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccc----eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 35679999999999999999999988777643211 0023345557778754421111 01015568888888877
Q ss_pred ee
Q 022933 226 EG 227 (290)
Q Consensus 226 ~~ 227 (290)
.+
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 30
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=53.53 E-value=45 Score=30.00 Aligned_cols=59 Identities=24% Similarity=0.493 Sum_probs=37.7
Q ss_pred CCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCC-CCeEEEEeEEEE
Q 022933 148 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK-APFYAYYRDFDI 225 (290)
Q Consensus 148 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 225 (290)
..|+.-.|.=....|.|.|||.+|..+........|. -.+|+ |-..+ +|.+|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 3677778888999999999999999987543211231 01343 33333 799999999986
No 31
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=53.07 E-value=1.6e+02 Score=25.77 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=45.8
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCccccCCCcccCCCCCCeEEEEeEE
Q 022933 146 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 223 (290)
Q Consensus 146 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (290)
....||.+-+-|+. ..+.+|+||+....-.-......| .. -.++|..- =.+-||. .| ....|.-++.+|
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~-~g-G~~vlGQe----Qd~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIP-GG-GTLVLGQE----QDSYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B--SS-EEEEESS-----BSBTTBT--CS-GGGB--EEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceEC-CC-CEEEECcc----ccccCCC--cC-CccEeeEEEece
Confidence 45789999999965 789999999955433222112222 11 22333321 1123453 34 345799999999
Q ss_pred EEeeecCCCCCcCCCCCCCcccccccccCCHHHHHHHHH
Q 022933 224 DIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRW 262 (290)
Q Consensus 224 ~v~~c~~~~~~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (290)
++ |+. .|++.|+++|..
T Consensus 153 ~i------------------Wd~----vLs~~eI~~l~~ 169 (195)
T PF00354_consen 153 NI------------------WDR----VLSPEEIRALAS 169 (195)
T ss_dssp EE------------------ESS-------HHHHHHHHH
T ss_pred EE------------------Eee----eCCHHHHHHHHh
Confidence 87 554 788888777654
No 32
>smart00282 LamG Laminin G domain.
Probab=52.18 E-value=66 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 022933 147 AADYHLYTILWNHHHIVFYVDDVPIRVY 174 (290)
Q Consensus 147 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 174 (290)
...||.-.|.-..+.++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4579999999999999999999765433
No 33
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=49.33 E-value=21 Score=37.21 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEeeCCCcc
Q 022933 147 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWA 201 (290)
Q Consensus 147 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wa 201 (290)
..+||.|.+.-+--.++.||||+...-..-. ..|| -.|.++-..|-+|-=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec--cCCc-cCcccccceeEEeeecc
Confidence 4789999999976569999999865322212 5688 56777777777777787
No 34
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=46.61 E-value=72 Score=25.55 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=32.7
Q ss_pred cCCCCCcceeEe-cCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeC
Q 022933 130 ANGKGDREQRVN-LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 176 (290)
Q Consensus 130 ~~g~~~~e~~~~-l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 176 (290)
.+|.-+.|++.. .+|.+.+ ..+-.|.=+++....+|||+++.++..
T Consensus 59 ~~g~Wg~Eer~~~~pf~~g~-~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 59 LNGNWGPEERSGGFPFQPGQ-PFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CCCEecHhhccCCCCCCCCC-eEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 334334555554 4554444 448899999999999999999988763
No 35
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.80 E-value=31 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=16.9
Q ss_pred eecCCCeEEecCCcEEEEEeccCC
Q 022933 37 TWSDAHLRQIEGGRAIQLVLDQNS 60 (290)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~ld~~s 60 (290)
.|.++.+.+ ..|+.++|.+.+.+
T Consensus 31 ~f~P~~i~v-~~G~~v~l~~~N~~ 53 (104)
T PF13473_consen 31 GFSPSTITV-KAGQPVTLTFTNND 53 (104)
T ss_dssp EEES-EEEE-ETTCEEEEEEEE-S
T ss_pred eEecCEEEE-cCCCeEEEEEEECC
Confidence 688999988 57777888887765
No 36
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=33.71 E-value=72 Score=27.29 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=28.9
Q ss_pred cceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 022933 136 REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 174 (290)
Q Consensus 136 ~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 174 (290)
+.+++++|- .+.|=|.|+|.-..+.+..+++|..+++-
T Consensus 91 ~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 91 MTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhhheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 345566663 34445999999999999999999888763
No 37
>PRK02710 plastocyanin; Provisional
Probab=32.75 E-value=1.4e+02 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=13.4
Q ss_pred eecCCCeEEecCCcEEEEEec
Q 022933 37 TWSDAHLRQIEGGRAIQLVLD 57 (290)
Q Consensus 37 ~w~~~~v~~~~~G~~l~L~ld 57 (290)
.|.++.+.+ +.|..+++...
T Consensus 43 ~F~P~~i~v-~~Gd~V~~~N~ 62 (119)
T PRK02710 43 AFEPSTLTI-KAGDTVKWVNN 62 (119)
T ss_pred EEeCCEEEE-cCCCEEEEEEC
Confidence 677788877 45666776643
No 38
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=28.74 E-value=1.2e+02 Score=22.89 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=31.1
Q ss_pred ecCCCeEEecCCcEEEEEeccCCCc-eeeEEEEeeeeEeeEEEEEEEecCC
Q 022933 38 WSDAHLRQIEGGRAIQLVLDQNSAF-LGCGFASKRQYLFGRVSMKIKLVPG 87 (290)
Q Consensus 38 w~~~~v~~~~~G~~l~L~ld~~s~y-ts~~i~Sk~~~~yG~~eariKlp~g 87 (290)
..++++.+.-+|+.|.++-.+...- ...... ...+.+|.|+-++.||.+
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 4566777766677788876554410 011111 245679999999999975
No 39
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.16 E-value=1.1e+02 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=22.2
Q ss_pred EEEeeeecCCCCCcceeEecCCCCCCCcEEEEEEEcCCeEEEE
Q 022933 123 TVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFY 165 (290)
Q Consensus 123 ~~~tnv~~~g~~~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fy 165 (290)
+++.|+-.++.. .|..|. .-=|+|++.|.+..+.|-
T Consensus 173 ii~vnlt~~~~v------~L~~~~-~~~~tYsV~W~~t~v~f~ 208 (593)
T KOG1277|consen 173 IIDVNLTTHGLV------DLRPDK-KLTFTYSVKWKETEVEFE 208 (593)
T ss_pred EEEEEeeecccc------cCCCCC-CCceEEEEEeeeccCcHH
Confidence 666666554422 222222 234899999999988874
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.06 E-value=72 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=21.8
Q ss_pred eEEEEEcCeeEEEEeCCCCCCCCCCCCceEEEEEe
Q 022933 161 HIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLW 195 (290)
Q Consensus 161 ~I~fyVDG~~vr~~~~~~~~~~P~~~Pm~l~lnlw 195 (290)
.+.|||||+++.+........++...|-.-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEE
Confidence 78899999999665543323343235555566653
No 41
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=28.05 E-value=2e+02 Score=23.99 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhcccccCcccccCceeeecCCCeEEecCCcEEEEEeccCC
Q 022933 11 FVLLYCLVSCSCVLGRPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNS 60 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~s 60 (290)
++++++++++.+.++......+.|.. ..+++.+...|..+.+.-|...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~af~~--~qs~~qv~g~G~V~~vLpdd~~ 54 (131)
T PF11948_consen 7 LFLSVLSAFSTALAASDTCLQQAFEN--QQSDVQVSGCGTVVKVLPDDNK 54 (131)
T ss_pred HHHHHHHHhccccccchHHHHHHHHh--hccCeeEeccEEEEEECcccCC
Confidence 33334444444444333333333332 3456677666755555555555
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=27.07 E-value=93 Score=23.73 Aligned_cols=47 Identities=11% Similarity=0.295 Sum_probs=29.7
Q ss_pred ecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEEEEEecCC
Q 022933 38 WSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPG 87 (290)
Q Consensus 38 w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~eariKlp~g 87 (290)
..++.+.+.-.++.|+++-.+.. .-.-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~---~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAEREN---RYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEec---ccccCCccEEEEEEEEEEEECCCC
Confidence 45566666555667888776543 110001235789999999999965
No 43
>PF15240 Pro-rich: Proline-rich
Probab=26.84 E-value=41 Score=29.45 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 022933 7 AIALFVLLYCLV 18 (290)
Q Consensus 7 ~~~~~~~~~~~~ 18 (290)
+++|.++||+|+
T Consensus 3 lVLLSvALLALS 14 (179)
T PF15240_consen 3 LVLLSVALLALS 14 (179)
T ss_pred hHHHHHHHHHhh
Confidence 334444444443
No 44
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=24.75 E-value=1.5e+02 Score=21.79 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=30.4
Q ss_pred ecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEEEEEecCC
Q 022933 38 WSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPG 87 (290)
Q Consensus 38 w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~eariKlp~g 87 (290)
+.++++.+.-+++.|.++-.+.. ... ...+.+|+|+=++.||..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~---~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEE---RED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEee---ecc---CCCEEEEEEEEEEECCCC
Confidence 55667777666677888776644 111 345678999999999975
No 45
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=24.57 E-value=2.8e+02 Score=21.99 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=32.5
Q ss_pred ecCCCCCccee-EecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeC
Q 022933 129 YANGKGDREQR-VNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 176 (290)
Q Consensus 129 ~~~g~~~~e~~-~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 176 (290)
+.+|.-+.|++ ...+|.+... -+-.|.=+++....+|||+.+..+..
T Consensus 63 ~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~ 110 (133)
T PF00337_consen 63 RINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPH 110 (133)
T ss_dssp EETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-
T ss_pred eECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeC
Confidence 33444445666 4455555554 47778889999999999999998874
No 46
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.49 E-value=1.1e+02 Score=24.26 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 022933 146 PAADYHLYTILWNHHHIVFYVDDVPIRVYK 175 (290)
Q Consensus 146 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 175 (290)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 56788999998 888899999999995544
No 47
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=24.40 E-value=2.9e+02 Score=20.27 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=12.6
Q ss_pred EecCCcEEEEEeccCC
Q 022933 45 QIEGGRAIQLVLDQNS 60 (290)
Q Consensus 45 ~~~~G~~l~L~ld~~s 60 (290)
.+.+|+.+.+.+|..+
T Consensus 61 ~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPAT 76 (83)
T ss_pred EECCCCEEEEEEcCCC
Confidence 4567888888888877
No 48
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.79 E-value=1.9e+02 Score=20.67 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=31.0
Q ss_pred ecCCCeEEecCCcEEEEEeccCCCceeeEEEEeeeeEeeEEEEEEEecCC
Q 022933 38 WSDAHLRQIEGGRAIQLVLDQNSAFLGCGFASKRQYLFGRVSMKIKLVPG 87 (290)
Q Consensus 38 w~~~~v~~~~~G~~l~L~ld~~s~yts~~i~Sk~~~~yG~~eariKlp~g 87 (290)
..++++.+.-.++.|.++..+........-.......+|.|+-+++||..
T Consensus 18 ~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 18 FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC
Confidence 44556666556667777765543111111223466778999999999976
No 49
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=21.96 E-value=3.4e+02 Score=21.15 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=16.9
Q ss_pred EeeeeEeeEEEEEEEecCCCCCceEEEEEeecCC
Q 022933 69 SKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT 102 (290)
Q Consensus 69 Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~ 102 (290)
+-..|+.+----.||+-+. .| +.|||+..+
T Consensus 50 ~ieEyRv~G~l~~IkV~P~--~G--~~Yyl~d~d 79 (105)
T PF11191_consen 50 TIEEYRVNGQLYMIKVQPK--AG--PPYYLVDPD 79 (105)
T ss_pred EEEEEEECCeEeeEEEEeC--CC--CCEEEECCC
Confidence 3355554422223344444 46 999999876
No 50
>PRK13617 psbV cytochrome c-550; Provisional
Probab=21.52 E-value=1.4e+02 Score=25.97 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=9.8
Q ss_pred eEEecCCcEEEEEecc
Q 022933 43 LRQIEGGRAIQLVLDQ 58 (290)
Q Consensus 43 v~~~~~G~~l~L~ld~ 58 (290)
|.++..|+.+.++..+
T Consensus 43 v~~~~~g~~~~~s~~~ 58 (170)
T PRK13617 43 VPADPSGSQVTFSESE 58 (170)
T ss_pred eecCCCCCeEEeCHHH
Confidence 4455667777776544
No 51
>PRK11372 lysozyme inhibitor; Provisional
Probab=21.03 E-value=3.1e+02 Score=21.84 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=5.0
Q ss_pred EEEEeecC
Q 022933 94 TAFYMNSN 101 (290)
Q Consensus 94 ~AFwl~~~ 101 (290)
..||..++
T Consensus 80 ~~fWtKG~ 87 (109)
T PRK11372 80 YVFWSKGD 87 (109)
T ss_pred EEEEEeCC
Confidence 57777643
No 52
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.88 E-value=99 Score=22.69 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcccccCcccccCceeee
Q 022933 9 ALFVLLYCLVSCSCVLGRPATFLEDFKVTW 38 (290)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w 38 (290)
++++.+++..+.++...++.-++-++...|
T Consensus 7 ~VLlaLvLIg~fAVqSdag~~y~p~y~~~~ 36 (71)
T PF04202_consen 7 AVLLALVLIGSFAVQSDAGYYYYPGYNAPR 36 (71)
T ss_pred HHHHHHHHHhhheeeecCccccCCCCCCCc
Confidence 344444444444444445555666666555
No 53
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.48 E-value=69 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.350 Sum_probs=20.5
Q ss_pred CcccccccccCCHHHHHHHHHHhhcC
Q 022933 242 NWWEANNYQALTAMEARRYRWVRLNH 267 (290)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (290)
.|| +..|..||++|+++++.++++|
T Consensus 35 G~~-~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 35 GMW-QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred CCC-ccccccCCHHHHHHHHHHHHHH
Confidence 455 4567899999999999998876
No 54
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=20.19 E-value=4.5e+02 Score=20.91 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=33.3
Q ss_pred ecCCCCCcceeE-ecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeC
Q 022933 129 YANGKGDREQRV-NLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 176 (290)
Q Consensus 129 ~~~g~~~~e~~~-~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 176 (290)
+.+|.-+.|++. ..+|.+ .+...-.|.=.++....+|||+++.++..
T Consensus 57 ~~~g~Wg~Eer~~~~Pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~f~~ 104 (128)
T smart00276 57 KLNGSWGSEEREGGFPFQP-GQPFDLTIIVQPDHFQIFVNGVHITTFPH 104 (128)
T ss_pred ccCCccchheEcCCCCCCC-CCEEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 334544566665 245543 35577788889999999999999988764
Done!