BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022934
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 40 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGG--- 91
+ND G R ++D F + + + V+GAQ +++V+ R ++L+ G
Sbjct: 23 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82
Query: 92 NDFVNNYYLVPYSARSRQFTLPNYVKYII----SEYRKLLMRLYELGARRVL 139
+DF+ LVP L + II SEYR R +L A+ +L
Sbjct: 83 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 40 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGG--- 91
+ND G R ++D F + + + V+GAQ +++V+ R ++L+ G
Sbjct: 44 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 103
Query: 92 NDFVNNYYLVPYSARSRQFTLPNYVKYII----SEYRKLLMRLYELGARRVL 139
+DF+ LVP L + II SEYR R +L A+ +L
Sbjct: 104 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 144
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 83 ALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTG 142
AL IT GGNDF+ L A+ L + V+ L + GAR ++V
Sbjct: 148 ALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQ-----------ALQQAGARYIVVWL 196
Query: 143 TGPLGCVPAELALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKIGQTVFIAANTQQTH 202
LG PA G + + +N +L L + G V I N
Sbjct: 197 LPDLGLTPATFG-----GPLQPFASQLSGTFNAELTAQLS----QAGANV-IPLNIPLLL 246
Query: 203 MDFVSNPQAYGFTTAK--VACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKANR 260
+ ++NP ++G + + C G + ++ P+ F D HP+ R
Sbjct: 247 KEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQR 306
Query: 261 LIVEQIFS 268
LI + +S
Sbjct: 307 LIADYTYS 314
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 40 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGGNDF 94
+ND G R ++D F + + + V+GA ++V+ R ++L+ G
Sbjct: 21 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA- 79
Query: 95 VNNYY--LVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAE 152
V+N+ LVP SEYR + R +L + +L G+G G
Sbjct: 80 VDNFIEKLVPLLDIGDIIIDGGN-----SEYRDTMRRCRDLKDKGILFVGSGVSG----- 129
Query: 153 LALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKIG 189
G+ G S + P ++ + QGI K+G
Sbjct: 130 -GEDGARYGPSL-MPGGNKEAWPHIKAIFQGIAAKVG 164
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 138 VLVTGTGPLGCVPAELALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKI 188
LVT G PA + G N C ELQ A N QLE LQ + +++
Sbjct: 945 TLVTTNVTWGIQPAPMGSGGENAQCEKELQ-ALEKENAQLEWELQALEKEL 994
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 97 NYYLVPYS-ARSRQFTLPNYVKYIISEYRKLLMRLYE---LGARRVLVTGTGPLGCVPAE 152
Y +VP A LP V I+ + + +Y + + VL+TG GP+G + A
Sbjct: 123 EYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLM-AA 181
Query: 153 LALRGSNGG-----------CSAELQRATSLYNPQLEQMLQGINRKIGQTVFI 194
+ +R S G + A L NP E +L+ + R G V +
Sbjct: 182 MVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEV 234
>pdb|4DJM|A Chain A, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|B Chain B, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|C Chain C, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|D Chain D, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|E Chain E, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|F Chain F, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|G Chain G, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|H Chain H, Crystal Structure Of The E. Coli Chaperone Drab
Length = 239
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 62 EYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLP 113
E+QR + + G +N L +TVGG + Y+ P+S SR++ LP
Sbjct: 164 EWQRAGNRLKGVNPTPFYIN--LSTLTVGGKEVKEREYIAPFS--SREYPLP 211
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 69 AVIGAQQARQLVNRALVLITVGGNDFV-NNYYLVPYSARSRQFTLPNYVKYIISEYRKLL 127
+I + ++++++ + +T + FV NN + P + R F+ P Y++ +++ ++L
Sbjct: 499 GLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERIL 558
Query: 128 MRLYELGA 135
+ Y+ A
Sbjct: 559 LLKYDSDA 566
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 69 AVIGAQQARQLVNRALVLITVGGNDFV-NNYYLVPYSARSRQFTLPNYVKYIISEYRKLL 127
+I + ++++++ + +T + FV NN + P + R F+ P Y++ +++ ++L
Sbjct: 500 GLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERIL 559
Query: 128 MRLYELGA 135
+ Y+ A
Sbjct: 560 LLKYDSDA 567
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 69 AVIGAQQARQLVNRALVLITVGGNDFV-NNYYLVPYSARSRQFTLPNYVKYIISEYRKLL 127
+I + ++++++ + +T + FV NN + P + R F+ P Y++ +++ ++L
Sbjct: 500 GLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERIL 559
Query: 128 MRLYELGA 135
+ Y+ A
Sbjct: 560 LLKYDSDA 567
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 69 AVIGAQQARQLVNRALVLITVGGNDFV-NNYYLVPYSARSRQFTLPNYVKYIISEYRKLL 127
+I + ++++++ + +T + FV NN + P + R F+ P Y++ +++ ++L
Sbjct: 499 GLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERIL 558
Query: 128 MRLYELGA 135
+ Y+ A
Sbjct: 559 LLKYDSDA 566
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,045,320
Number of Sequences: 62578
Number of extensions: 317751
Number of successful extensions: 652
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 12
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)