Query 022935
Match_columns 290
No_of_seqs 201 out of 1272
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4453 Predicted ER membrane 100.0 4.1E-36 8.8E-41 264.1 16.1 206 54-290 60-269 (269)
2 COG0170 SEC59 Dolichol kinase 99.9 2.1E-24 4.5E-29 193.4 18.7 193 85-289 14-214 (216)
3 PF01148 CTP_transf_1: Cytidyl 99.9 2.8E-20 6.1E-25 168.1 20.0 209 66-289 27-255 (259)
4 KOG2468 Dolichol kinase [Lipid 99.9 1.2E-20 2.7E-25 180.6 15.8 188 87-285 310-507 (510)
5 PRK11624 cdsA CDP-diglyceride 99.5 1.6E-12 3.6E-17 121.1 18.7 106 158-266 122-240 (285)
6 PLN02953 phosphatidate cytidyl 99.2 1.2E-09 2.7E-14 104.7 17.6 75 189-266 278-356 (403)
7 COG0575 CdsA CDP-diglyceride s 99.1 8.7E-09 1.9E-13 95.1 20.4 106 159-266 109-223 (265)
8 PLN02594 phosphatidate cytidyl 98.9 2.1E-08 4.5E-13 95.1 12.7 53 184-236 129-182 (342)
9 COG4589 Predicted CDP-diglycer 98.2 0.00024 5.1E-09 64.8 18.8 68 186-258 179-249 (303)
10 PRK04032 hypothetical protein; 97.7 9.7E-05 2.1E-09 63.3 6.9 64 200-266 23-90 (159)
11 KOG1440 CDP-diacylglycerol syn 97.5 0.0013 2.7E-08 63.9 12.1 53 184-236 224-277 (432)
12 TIGR00297 conserved hypothetic 97.3 0.028 6.1E-07 51.3 17.8 78 183-266 115-202 (237)
13 PF01940 DUF92: Integral membr 97.3 0.045 9.7E-07 49.7 18.6 101 182-288 109-224 (226)
14 COG1836 Predicted membrane pro 97.2 0.036 7.7E-07 50.5 16.5 77 184-266 125-211 (247)
15 PF01864 DUF46: Putative integ 90.6 0.58 1.3E-05 40.9 5.5 24 210-233 44-67 (175)
16 KOG1608 Protein transporter of 77.9 24 0.00051 33.6 10.0 31 78-109 182-212 (374)
17 PF07281 INSIG: Insulin-induce 56.2 79 0.0017 28.0 8.4 59 196-266 89-147 (193)
18 PF01554 MatE: MatE; InterPro 44.9 1.2E+02 0.0026 24.3 7.4 24 186-209 43-66 (162)
19 PF14126 DUF4293: Domain of un 31.1 1.5E+02 0.0033 25.0 5.9 13 138-150 136-148 (149)
20 COG0586 DedA Uncharacterized m 26.8 50 0.0011 29.3 2.4 24 185-208 63-86 (208)
21 COG4803 Predicted membrane pro 25.8 62 0.0013 27.8 2.6 62 204-279 47-108 (170)
22 PF11283 DUF3084: Protein of u 25.1 2.4E+02 0.0051 21.5 5.3 20 196-215 20-42 (79)
23 PF05366 Sarcolipin: Sarcolipi 22.9 72 0.0016 19.6 1.8 18 272-289 8-25 (31)
24 PF11992 DUF3488: Domain of un 20.8 7.1E+02 0.015 23.4 17.0 55 183-239 125-179 (325)
No 1
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=100.00 E-value=4.1e-36 Score=264.12 Aligned_cols=206 Identities=36% Similarity=0.672 Sum_probs=177.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 022935 54 NPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLL 133 (290)
Q Consensus 54 ~~~~~d~~~~~~~l~~~~~~l~l~~~l~~r~~~~~ei~RKliHi~~G~v~~l~~~~f~~~~~a~~laa~~~~l~~lr~~~ 133 (290)
+...+|.+..+......+.++.+++...+|....+.+.||++|+..|.++.+.||+|+ |+..
T Consensus 60 ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi~ifigdlirlnWP~Fs------------------rLy~ 121 (269)
T KOG4453|consen 60 NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFIHIFIGDLIRLNWPIFS------------------RLYI 121 (269)
T ss_pred hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhHHHHhccHHHH------------------HHHH
Confidence 6678999999999999999999999999999999999999999999999999999985 3333
Q ss_pred hhcCCccchhhhhcccccccccccchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhHHHHhhhhcCCcccCCCCC
Q 022935 134 VGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQN 213 (290)
Q Consensus 134 ~gl~~~~~~~~~~~~~R~~d~~~~l~G~ly~~l~~~l~~~lf~~~~p~~~~~il~l~~GD~~AaiVG~~~Gr~k~~~~~~ 213 (290)
.+++... |+.|++ .++|++||.+++...+.+||++.|++.+.++.+| |++|++||||||+.|.|++++
T Consensus 122 r~lg~lm---------re~erh-l~nGvLfYvLgl~fs~~ff~kespi~s~~Llswc--Dt~AdtvGRKfG~~tpk~akn 189 (269)
T KOG4453|consen 122 RGLGILM---------REVERH-LLNGVLFYVLGLLFSAVFFWKESPIGSISLLSWC--DTIADTVGRKFGSTTPKYAKN 189 (269)
T ss_pred hcccccc---------hHHHHH-HhcchHHHHHHHHHHhhccccccHHHHHHHHHHh--hhHHHHHhhhccccCCCcCCC
Confidence 3444332 233322 6799999999999999999998888776666666 999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcc--cccccH--HHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHHHHHh
Q 022935 214 KSIAGSCAMASAGFLSSIGFMYYFFSFG--YMQCSW--ELVFGFLVVSLASALVESLPISTKLDDNLTLTITSIAVGSLV 289 (290)
Q Consensus 214 KS~eGSla~fi~s~~~~~~~l~~f~~~g--~~~~~~--~~~~~~li~a~vatlvEalp~~~~~~DNltIPl~s~~~~~ll 289 (290)
||++||++||.+++.+++.+++||.+.| +.+..| ......++++++++++|++|+.. .|||+|||+++++.++++
T Consensus 190 KSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r~~~~~l~l~~g~vaAlvEsldi~~-lDDNltIpv~Sal~~yl~ 268 (269)
T KOG4453|consen 190 KSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWRETTLQLVLMVGMVAALVESLDITD-LDDNLTIPVASALAAYLS 268 (269)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhccCcchhccccccchHHHHHHHHHHHHHHhcCCccC-CCCCeeehHHHHHHHHhc
Confidence 9999999999999999999999999887 655443 33445789999999999999975 999999999999999987
Q ss_pred C
Q 022935 290 F 290 (290)
Q Consensus 290 ~ 290 (290)
|
T Consensus 269 f 269 (269)
T KOG4453|consen 269 F 269 (269)
T ss_pred C
Confidence 6
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=99.93 E-value=2.1e-24 Score=193.38 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=122.1
Q ss_pred ccCccchHHHHHHHHHHHHHHHHhhcCCchHHHHHH---HHHHH--HHHHHHHHhhcC---Cccchhhhhcccccccccc
Q 022935 85 LFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILA---SLTPG--VNIIRMLLVGSG---MWKDEATVKSMSRYGDRRE 156 (290)
Q Consensus 85 ~~~~ei~RKliHi~~G~v~~l~~~~f~~~~~a~~la---a~~~~--l~~lr~~~~gl~---~~~~~~~~~~~~R~~d~~~ 156 (290)
..+.|+.||..|+..+.+.... ....+..-..+. .++.. .+..|....+.. .....+..+..+|+.|++.
T Consensus 14 ~~~~~~~rk~~hi~~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~e~~~ 91 (216)
T COG0170 14 DTRLEVRRKLLHISGGLLFLLY--ILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNG 91 (216)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhHHHhcC
Confidence 4567899999999777665432 322322211111 11111 223332211100 0012346777888887754
Q ss_pred cchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhHHHHhhhhcCCcccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022935 157 LLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYY 236 (290)
Q Consensus 157 ~l~G~ly~~l~~~l~~~lf~~~~p~~~~~il~l~~GD~~AaiVG~~~Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~ 236 (290)
...|..+|..+..+...+++. .+++.++++.+++||++|+++|+||||||.+.+++||+|||+++|+++++++..++.+
T Consensus 92 ~~~g~~~~~~~~~i~~~~lf~-~~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~~~~ 170 (216)
T COG0170 92 PGLGGIIYFIGGGLLASLLFP-IEVAIAGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLYGY 170 (216)
T ss_pred CCcCcHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 334666666666666555432 3577799999999999999999999999888899999999999999999999877665
Q ss_pred HhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHHHHHh
Q 022935 237 FFSFGYMQCSWELVFGFLVVSLASALVESLPISTKLDDNLTLTITSIAVGSLV 289 (290)
Q Consensus 237 f~~~g~~~~~~~~~~~~li~a~vatlvEalp~~~~~~DNltIPl~s~~~~~ll 289 (290)
.... ...........+..++..|. ...|||+|||+.+++..++.
T Consensus 171 ~~~~-----~~~i~~~~~~~~~~~~~~~~----~~~~DNltIPl~~~~~~~~~ 214 (216)
T COG0170 171 LGAF-----VGAIGALVLEVGATATSLEL----LPLDDNLTIPLFAALLAYLL 214 (216)
T ss_pred HHhH-----HHHHHHHHHHHHHHHhhccC----CCCCCceeHHHHHHHHHHHh
Confidence 3211 11110112222233344443 35899999999999988764
No 3
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=99.86 E-value=2.8e-20 Score=168.12 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhcCCccchhhh
Q 022935 66 SAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATV 145 (290)
Q Consensus 66 ~l~~~~~~l~l~~~l~~r~~~~~ei~RKliHi~~G~v~~l~~~~f~~~~~a~~laa~~~~l~~lr~~~~gl~~~~~~~~~ 145 (290)
.++.++..+...|+.+.+...+++..++..|+.....................+...........++.. .
T Consensus 27 ~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~---- 96 (259)
T PF01148_consen 27 LLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYFFATILIIALLLFLVL------G---- 96 (259)
T ss_pred HHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHhhh------c----
Confidence 667777888888999888777778888888775555443333332222222222222222222222110 0
Q ss_pred hccccccc-ccccchhHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhHHHHhhhhcCCcccC-CCCCcchHHHHHH
Q 022935 146 KSMSRYGD-RRELLTGPLYYAITITLACVIYWR-NSPNGIAAICNLCAGDGFADVVGRRFGKRKLP-YNQNKSIAGSCAM 222 (290)
Q Consensus 146 ~~~~R~~d-~~~~l~G~ly~~l~~~l~~~lf~~-~~p~~~~~il~l~~GD~~AaiVG~~~Gr~k~~-~~~~KS~eGSla~ 222 (290)
+++.+ ......+..|.+..........+. +.+....+++++++||++|+++|++||||+.| .++|||||||++|
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~ 173 (259)
T PF01148_consen 97 ---ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAG 173 (259)
T ss_pred ---chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHH
Confidence 11111 111123344433333222222233 33456689999999999999999999999655 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH---HHHHHHHhh--------------cCCCCCCCcchhhHHHHHHH
Q 022935 223 ASAGFLSSIGFMYYFFSFGYMQCSWELVFGFLVV---SLASALVES--------------LPISTKLDDNLTLTITSIAV 285 (290)
Q Consensus 223 fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~li~---a~vatlvEa--------------lp~~~~~~DNltIPl~s~~~ 285 (290)
++++++++.++..+..+.. .+.+..+..+++. +.++++.|+ +|-....+||+..|+.++.+
T Consensus 174 ~i~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~ 251 (259)
T PF01148_consen 174 FISSFIISFLLLYYLSSFF--LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPV 251 (259)
T ss_pred HHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHH
Confidence 9999999988766543210 1223333334444 444567777 45444579999999999988
Q ss_pred HHHh
Q 022935 286 GSLV 289 (290)
Q Consensus 286 ~~ll 289 (290)
.|++
T Consensus 252 ~~~~ 255 (259)
T PF01148_consen 252 FYIL 255 (259)
T ss_pred HHHH
Confidence 8765
No 4
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=180.59 Aligned_cols=188 Identities=22% Similarity=0.340 Sum_probs=129.0
Q ss_pred CccchHHHHHHHHHHHHHHHHhhcCCchHHHHH---HHHHHHHHHHHHHHh-hcCCccchhhhhcccccccccccchhHH
Q 022935 87 DQKLNRKLVHISIGLIFMLCWPLFSSGPRGAIL---ASLTPGVNIIRMLLV-GSGMWKDEATVKSMSRYGDRRELLTGPL 162 (290)
Q Consensus 87 ~~ei~RKliHi~~G~v~~l~~~~f~~~~~a~~l---aa~~~~l~~lr~~~~-gl~~~~~~~~~~~~~R~~d~~~~l~G~l 162 (290)
++...||..|...-..++- -..++++..-+.+ .+++..+|++|+..+ .++. .-+...+....++|.+++...++
T Consensus 310 ~~t~~RK~~HlliV~l~iP-~li~d~~fL~lA~s~~LavFl~lE~IR~~ri~PlG~-~l~~fl~~F~DeRDsGpLIiSh~ 387 (510)
T KOG2468|consen 310 NETTSRKYFHLLIVLLYIP-GLIFDPNFLYLAFSGALAVFLFLEYIRFLRIPPLGS-ALHLFLSRFTDERDSGPLIISHF 387 (510)
T ss_pred hHHHHHHHHHHHHHHHHhh-HHhcCchhHHHHHhhHHHHHHHHHHHHHhcCCCchH-HHHHHHHHhcccccCCceeHHHH
Confidence 3348999999865444322 2235555433322 346778999998532 1110 01334455555566666777889
Q ss_pred HHHHHHHHHHHHHhc--C--ch-HHHHHHHHHHHhhhHHHHhhhhcCCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 022935 163 YYAITITLACVIYWR--N--SP-NGIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYYF 237 (290)
Q Consensus 163 y~~l~~~l~~~lf~~--~--~p-~~~~~il~l~~GD~~AaiVG~~~Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~f 237 (290)
|..+|..+..++.+. + .. .-.+|++.+++||++|+++|+||||+||+ +.+||+|||+|+.+..++++.+.. +
T Consensus 388 yLLiGcslPIWms~~p~~~~ral~~laGiLalGiGDTmASiiG~r~G~~RW~-~TkKTlEGT~Afivs~~iv~~ll~--i 464 (510)
T KOG2468|consen 388 YLLIGCSLPIWMSNSPCGGDRALALLAGILALGIGDTMASIIGKRYGRIRWS-GTKKTLEGTLAFIVSSFIVCLLLL--I 464 (510)
T ss_pred HHHHhcccchhccCCCCCchhhhhhhhhheeeccchHHHHHHhhhhcceecC-CCcceeehhhHHHHHHHHHHHHHH--H
Confidence 999999998888642 1 11 23368999999999999999999999998 459999999999999999998765 2
Q ss_pred hhccccc-ccHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHH
Q 022935 238 FSFGYMQ-CSWELVFGFLVVSLASALVESLPISTKLDDNLTLTITSIAV 285 (290)
Q Consensus 238 ~~~g~~~-~~~~~~~~~li~a~vatlvEalp~~~~~~DNltIPl~s~~~ 285 (290)
.+.|+.. ..|.. .+..+..++++|+. +.++||+.+|+....+
T Consensus 465 ~~~~v~~~~t~~~---~L~a~~~salLEa~---T~q~DNlllPl~~~il 507 (510)
T KOG2468|consen 465 FKAGVFLSLTWWQ---TLFACLLSALLEAY---TTQNDNLLLPLYMYIL 507 (510)
T ss_pred hhcccccchHHHH---HHHHHHHHHHHHHh---hhccccchHHHHHHHH
Confidence 3344332 22322 35566677899995 5699999999986654
No 5
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=99.50 E-value=1.6e-12 Score=121.11 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHHHHHh----cC---chHHH-HHHHHHHHhhhHHHHhhhhcCCccc-C-CCCCcchHHHHHHHHHHH
Q 022935 158 LTGPLYYAITITLACVIYW----RN---SPNGI-AAICNLCAGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGF 227 (290)
Q Consensus 158 l~G~ly~~l~~~l~~~lf~----~~---~p~~~-~~il~l~~GD~~AaiVG~~~Gr~k~-~-~~~~KS~eGSla~fi~s~ 227 (290)
..|.+|+...+.....+-. .+ .+..+ ..+++...+|+.|+++||++||||+ | +||||||||++++++.+.
T Consensus 122 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~ 201 (285)
T PRK11624 122 IFGVLTIVPFFWGMLALRAWHYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAA 201 (285)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHH
Confidence 4577776555443332321 11 12233 3444455899999999999999996 6 899999999999999999
Q ss_pred HHHHHHHHHHhhcccccccHHHHHHHH---HHHHHHHHHhhc
Q 022935 228 LSSIGFMYYFFSFGYMQCSWELVFGFL---VVSLASALVESL 266 (290)
Q Consensus 228 ~~~~~~l~~f~~~g~~~~~~~~~~~~l---i~a~vatlvEal 266 (290)
+++.++..+. +.. .+.+..+..++ +.+..++++||.
T Consensus 202 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~GDL~ES~ 240 (285)
T PRK11624 202 VISWLFGMWA-PLD--VAPVTLLICSIVAALASVLGDLTESM 240 (285)
T ss_pred HHHHHHHHHH-ccc--ccHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9887764332 111 12233333333 345567999997
No 6
>PLN02953 phosphatidate cytidylyltransferase
Probab=99.18 E-value=1.2e-09 Score=104.74 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=53.9
Q ss_pred HHHhhhHHHHhhhhcCCcccC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHH---HHHHHHHHHHh
Q 022935 189 LCAGDGFADVVGRRFGKRKLP-YNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGF---LVVSLASALVE 264 (290)
Q Consensus 189 l~~GD~~AaiVG~~~Gr~k~~-~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~---li~a~vatlvE 264 (290)
...+|.+|+++|+++||||+. +|+||||||.+++++.+++++.+...++. . ....++.+..+ .+.+.+++++|
T Consensus 278 vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~-~--~~~~~~~i~lg~li~~~~~~GDL~e 354 (403)
T PLN02953 278 VIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLS-W--PQSLFSSIAFGFLNFFGSVFGDLTE 354 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHc-c--chHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346899999999999999975 89999999999999999888876543321 1 01112222222 34466789999
Q ss_pred hc
Q 022935 265 SL 266 (290)
Q Consensus 265 al 266 (290)
+.
T Consensus 355 S~ 356 (403)
T PLN02953 355 SM 356 (403)
T ss_pred HH
Confidence 97
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=99.13 E-value=8.7e-09 Score=95.14 Aligned_cols=106 Identities=26% Similarity=0.312 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHhhhHHHHhhhhcCCccc-C-CCCCcchHHHHHHHHHHHHHHHH
Q 022935 159 TGPLYYAITITLACVIYWR----NSPNGIAAICNLCAGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGFLSSIG 232 (290)
Q Consensus 159 ~G~ly~~l~~~l~~~lf~~----~~p~~~~~il~l~~GD~~AaiVG~~~Gr~k~-~-~~~~KS~eGSla~fi~s~~~~~~ 232 (290)
.+..|++..+......+.. .........+....+|..|+.+||++||||+ | .||+|||||.+++.+.+.+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~ 188 (265)
T COG0575 109 FGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVL 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHH
Confidence 5677777665544433321 1112334455556999999999999999984 6 89999999999999999888877
Q ss_pred HHHHHhhcccccccHHHHHH---HHHHHHHHHHHhhc
Q 022935 233 FMYYFFSFGYMQCSWELVFG---FLVVSLASALVESL 266 (290)
Q Consensus 233 ~l~~f~~~g~~~~~~~~~~~---~li~a~vatlvEal 266 (290)
.....+. ...+.+..+.. ..+.+.+++++||.
T Consensus 189 ~~~~~~~--~~~~~~~~~~l~~~~~l~~~lGDL~eS~ 223 (265)
T COG0575 189 VIFLLSS--LILNIWTLLILGLLLVLTSQLGDLFESY 223 (265)
T ss_pred HHHHHhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5544321 01112322222 34455667899964
No 8
>PLN02594 phosphatidate cytidylyltransferase
Probab=98.89 E-value=2.1e-08 Score=95.13 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhHHHHhhhhcCCcccC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022935 184 AAICNLCAGDGFADVVGRRFGKRKLP-YNQNKSIAGSCAMASAGFLSSIGFMYY 236 (290)
Q Consensus 184 ~~il~l~~GD~~AaiVG~~~Gr~k~~-~~~~KS~eGSla~fi~s~~~~~~~l~~ 236 (290)
..+.....+|.+|+++|+++||||+. .||||||||.+++++++.+.+.++..+
T Consensus 129 l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~ 182 (342)
T PLN02594 129 LPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANI 182 (342)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 45556668999999999999999974 899999999999999999999877544
No 9
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=98.21 E-value=0.00024 Score=64.82 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=50.9
Q ss_pred HHHHH-HhhhHHHHhhhhcCCccc-C-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH
Q 022935 186 ICNLC-AGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGFLVVSL 258 (290)
Q Consensus 186 il~l~-~GD~~AaiVG~~~Gr~k~-~-~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~li~a~ 258 (290)
.++++ ..|-+-++-|+.+||||. | .||+||+||-+++.+.+.+.+.... ++.++ ++++....++++++
T Consensus 179 lli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp~----~~lqa~~~~~~I~l 249 (303)
T COG4589 179 LLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPL----NTLQALLAGLLIGL 249 (303)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCCC----cHHHHHHHHHHHHH
Confidence 33444 999999999999999996 5 8999999999999999998888765 54443 23444444444443
No 10
>PRK04032 hypothetical protein; Provisional
Probab=97.72 E-value=9.7e-05 Score=63.33 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=40.2
Q ss_pred hhhc-CCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH---HHHHHHHHHhhc
Q 022935 200 GRRF-GKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGFL---VVSLASALVESL 266 (290)
Q Consensus 200 G~~~-Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~l---i~a~vatlvEal 266 (290)
|+++ +.+|+ .|++|||||.+++.+.+.+.+.++...+... ....++....++ +.+..++++||.
T Consensus 23 g~~~~dg~~i-iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~--~~~~~~~~~~g~li~v~~~~GDL~eS~ 90 (159)
T PRK04032 23 GKTFVDGRRI-LGDGKTWRGLIGGILFGTLVGLIQNLLVPAY--IGALGVAIILAFLLSFGALLGDMLGSF 90 (159)
T ss_pred CCcCCCCCee-CCCCCcHHHhHHHHHHHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5666 33444 6899999999999999999988764432210 001122323333 344557899997
No 11
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=97.52 E-value=0.0013 Score=63.93 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhHHHHhhhhcCCccc-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022935 184 AAICNLCAGDGFADVVGRRFGKRKL-PYNQNKSIAGSCAMASAGFLSSIGFMYY 236 (290)
Q Consensus 184 ~~il~l~~GD~~AaiVG~~~Gr~k~-~~~~~KS~eGSla~fi~s~~~~~~~l~~ 236 (290)
........+|-+|+++|.++||+++ ..++||||||-+|+.++.++.+.++.+.
T Consensus 224 ~P~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~v 277 (432)
T KOG1440|consen 224 VPAGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYV 277 (432)
T ss_pred HHhHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHH
Confidence 3444555899999999999999985 5899999999999977777777665444
No 12
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=97.33 E-value=0.028 Score=51.30 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhHHHHhhhhcCCcc--------cC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHH
Q 022935 183 IAAICNLCAGDGFADVVGRRFGKRK--------LP--YNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFG 252 (290)
Q Consensus 183 ~~~il~l~~GD~~AaiVG~~~Gr~k--------~~--~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~ 252 (290)
.++-+.-+.+|+.|+-+|..++|+. .| -|+.=|++|+++.++.+++++...+.. +.. ++..+..
T Consensus 115 f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~~~~~----~~~--~~~~~~~ 188 (237)
T TIGR00297 115 YVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLGYLL----GLI--SFKGILF 188 (237)
T ss_pred HHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH----hhc--chHHHHH
Confidence 4566667799999999999998743 12 367789999999999999998654322 111 1223344
Q ss_pred HHHHHHHHHHHhhc
Q 022935 253 FLVVSLASALVESL 266 (290)
Q Consensus 253 ~li~a~vatlvEal 266 (290)
+.+.+.+++++|++
T Consensus 189 ~~~aG~~Gsl~DSl 202 (237)
T TIGR00297 189 STLAAFAGTNLDSL 202 (237)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677788888875
No 13
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=97.28 E-value=0.045 Score=49.69 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhhHHHHhhhhcCCccc--------C--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 022935 182 GIAAICNLCAGDGFADVVGRRFGKRKL--------P--YNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVF 251 (290)
Q Consensus 182 ~~~~il~l~~GD~~AaiVG~~~Gr~k~--------~--~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~ 251 (290)
+..+-+.-+-+|+.|+-+|..+++++. | -|+.=|++|+++.+..+++++....... +.+...+.
T Consensus 109 ~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~------~~~~~~~~ 182 (226)
T PF01940_consen 109 AFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLG------LISFPLVL 182 (226)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHH------ccchHHHH
Confidence 345666677999999999998877532 1 2667899999999999999998765442 11122233
Q ss_pred HHHHHHHHHHHHhhc-----CCCCCCCcchhhHHHHHHHHHH
Q 022935 252 GFLVVSLASALVESL-----PISTKLDDNLTLTITSIAVGSL 288 (290)
Q Consensus 252 ~~li~a~vatlvEal-----p~~~~~~DNltIPl~s~~~~~l 288 (290)
...+.+.+++++|++ ....+..||=.|=+.+.+++.+
T Consensus 183 ~~~~~G~~Gsl~DSlLGAtlQ~G~~~l~N~~VN~lstl~~al 224 (226)
T PF01940_consen 183 LIALAGFLGSLLDSLLGATLQRGRGWLNNDAVNFLSTLIGAL 224 (226)
T ss_pred HHHHHHHHHHHHHHHhhHHHhCCCCCcChhHHHHHHHHHHHH
Confidence 345666777777665 1012467787777777766544
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=97.17 E-value=0.036 Score=50.48 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhHHHHhhhhcCCccc---------C-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 022935 184 AAICNLCAGDGFADVVGRRFGKRKL---------P-YNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGF 253 (290)
Q Consensus 184 ~~il~l~~GD~~AaiVG~~~Gr~k~---------~-~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~ 253 (290)
++-...+-+|++|+-+|+.+||+.. | -++.-|++|++|.++.+++++..-.... +. +...+...
T Consensus 125 ~~SvAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~~l~~----~~--~~~~v~~v 198 (247)
T COG1836 125 AASVATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLSYLVG----YI--SLGGVLSV 198 (247)
T ss_pred HHHHHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHHHHHH----hc--ccchhHHH
Confidence 3444566999999999999998642 1 3677899999999999999987654332 11 12222234
Q ss_pred HHHHHHHHHHhhc
Q 022935 254 LVVSLASALVESL 266 (290)
Q Consensus 254 li~a~vatlvEal 266 (290)
.+.+.+++.+|++
T Consensus 199 tlaGf~G~~iDSl 211 (247)
T COG1836 199 TLAGFAGTNIDSL 211 (247)
T ss_pred HHHHHHhhhHHHH
Confidence 4455555555554
No 15
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=90.58 E-value=0.58 Score=40.88 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHH
Q 022935 210 YNQNKSIAGSCAMASAGFLSSIGF 233 (290)
Q Consensus 210 ~~~~KS~eGSla~fi~s~~~~~~~ 233 (290)
.+++|||+|.+++.+.+.+++.+.
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~ 67 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQ 67 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 16
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=24 Score=33.57 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHhccccCccchHHHHHHHHHHHHHHHHhh
Q 022935 78 EETARRDLFDQKLNRKLVHISIGLIFMLCWPL 109 (290)
Q Consensus 78 ~~l~~r~~~~~ei~RKliHi~~G~v~~l~~~~ 109 (290)
|++..+-+ ++|++||++|+..++..+...++
T Consensus 182 ElYfQK~K-keeiprqlvyi~l~l~hI~gAYl 212 (374)
T KOG1608|consen 182 ELYFQKTK-KEEIPRQLVYIILHLFHIAGAYL 212 (374)
T ss_pred HHHHHHHh-hhhccHHHHHHHHHHHHHHHHHH
Confidence 66655543 88999999999888764433333
No 17
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=56.24 E-value=79 Score=28.01 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHhhhhcCCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHhhc
Q 022935 196 ADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGFLVVSLASALVESL 266 (290)
Q Consensus 196 AaiVG~~~Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~li~a~vatlvEal 266 (290)
++.+|..++-+|+++.+ +.+-|++-.+.+... ++.| +....-...+.++|+.++++|..
T Consensus 89 ~~FvGi~~airkl~w~s--~~Q~s~~lalln~~L----W~lf------DrT~sGf~ls~~va~~g~~~~~~ 147 (193)
T PF07281_consen 89 GAFVGISFAIRKLPWSS--SLQASITLALLNPGL----WWLF------DRTRSGFLLSTAVALLGTLIEYG 147 (193)
T ss_pred HHHHHHHHHHhhCCCCc--HHHHHHHHHHHHHHH----HHHh------CCchhHHHHHHHHHHHHHHhhee
Confidence 44578888888888765 677777666555443 2222 33444445578888899988876
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=44.95 E-value=1.2e+02 Score=24.32 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHhhhHHHHhhhhcCCcccC
Q 022935 186 ICNLCAGDGFADVVGRRFGKRKLP 209 (290)
Q Consensus 186 il~l~~GD~~AaiVG~~~Gr~k~~ 209 (290)
+...+++.+.+.++++.+|++|..
T Consensus 43 ~~~~g~~~a~~~~~s~~~G~~~~~ 66 (162)
T PF01554_consen 43 MLIFGLATALQILISQNIGAGDYK 66 (162)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSTT
T ss_pred hhcccccccccceeeccccccccc
Confidence 466779999999999999998764
No 19
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=31.09 E-value=1.5e+02 Score=24.97 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=10.7
Q ss_pred Cccchhhhhcccc
Q 022935 138 MWKDEATVKSMSR 150 (290)
Q Consensus 138 ~~~~~~~~~~~~R 150 (290)
..||++.+|+++|
T Consensus 136 I~kDEkLVrS~DR 148 (149)
T PF14126_consen 136 IKKDEKLVRSADR 148 (149)
T ss_pred hHHHHHHHHHhhc
Confidence 4578999998887
No 20
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=26.76 E-value=50 Score=29.25 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=19.0
Q ss_pred HHHHHHHhhhHHHHhhhhcCCccc
Q 022935 185 AICNLCAGDGFADVVGRRFGKRKL 208 (290)
Q Consensus 185 ~il~l~~GD~~AaiVG~~~Gr~k~ 208 (290)
+.+-..+||...+.+||++|++.+
T Consensus 63 ~~lga~lGd~i~Y~iGr~~G~~~l 86 (208)
T COG0586 63 ATLGALLGDLISYWIGRRFGRKLL 86 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHH
Confidence 444455999999999999997653
No 21
>COG4803 Predicted membrane protein [Function unknown]
Probab=25.84 E-value=62 Score=27.79 Aligned_cols=62 Identities=31% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhH
Q 022935 204 GKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYYFFSFGYMQCSWELVFGFLVVSLASALVESLPISTKLDDNLTLT 279 (290)
Q Consensus 204 Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~f~~~g~~~~~~~~~~~~li~a~vatlvEalp~~~~~~DNltIP 279 (290)
||.|+.-.-+-|-.|..++-.=+.+++++++. || ....+.|..+++.-++. ...+|||+.=-
T Consensus 47 gkvklkQ~~Nlt~aGa~sGafWG~LiGllFl~----------Pl---~G~avGAa~GAl~g~l~-DvGIdDdFik~ 108 (170)
T COG4803 47 GKVKLKQLMNLTGAGAVSGAFWGMLIGLLFLN----------PL---LGMAVGAASGALSGSLT-DVGIDDDFIKE 108 (170)
T ss_pred CCeeHHHHhhhhhhccccccHHHHHHHHHHHh----------HH---HHHHHHHhhhhhcccee-ecCcCHHHHHH
Confidence 55554322345666666655555556555432 22 22334455566666662 33589997533
No 22
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=25.11 E-value=2.4e+02 Score=21.53 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=12.9
Q ss_pred HHHhhhhcCCcccC---CCCCcc
Q 022935 196 ADVVGRRFGKRKLP---YNQNKS 215 (290)
Q Consensus 196 AaiVG~~~Gr~k~~---~~~~KS 215 (290)
++-+|+|.||+|+. ..|+.|
T Consensus 20 GD~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 20 GDRIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHHHhHHHhhhhcCCCccc
Confidence 34678888888753 455554
No 23
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=22.93 E-value=72 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.0
Q ss_pred CCcchhhHHHHHHHHHHh
Q 022935 272 LDDNLTLTITSIAVGSLV 289 (290)
Q Consensus 272 ~~DNltIPl~s~~~~~ll 289 (290)
.--|+||-+...+++|++
T Consensus 8 l~lnftvvlitvilmwll 25 (31)
T PF05366_consen 8 LFLNFTVVLITVILMWLL 25 (31)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 345999999999999986
No 24
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=20.83 E-value=7.1e+02 Score=23.43 Aligned_cols=55 Identities=9% Similarity=-0.051 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhHHHHhhhhcCCcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 022935 183 IAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGFMYYFFS 239 (290)
Q Consensus 183 ~~~il~l~~GD~~AaiVG~~~Gr~k~~~~~~KS~eGSla~fi~s~~~~~~~l~~f~~ 239 (290)
....+.++..=..++++.-.....+- ..++.+-=+..+++.+...+.+++..|..
T Consensus 125 ~~l~~ll~~~~~~~~L~~l~~~~~~~--~~~~~~~~~~~l~l~alpl~~vlFl~fPR 179 (325)
T PF11992_consen 125 FALYLLLFLVLLLAALVLLHQPDSRR--SLRQLLRRALKLLLQALPLALVLFLLFPR 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333344444566666543222110 12345555556666776666665555443
Done!