Query 022935
Match_columns 290
No_of_seqs 201 out of 1272
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 15.5 62 0.0021 18.3 1.2 12 23-34 5-16 (26)
2 1jdm_A Sarcolipin; helix, memb 9.6 1.6E+02 0.0056 17.3 1.8 17 273-289 9-25 (31)
3 3s8f_C Cytochrome C oxidase po 7.6 3.6E+02 0.012 16.3 2.8 20 157-176 4-23 (34)
4 1k4u_P Phagocyte NADPH oxidase 7.5 1.7E+02 0.0057 17.6 1.2 13 23-35 2-14 (32)
5 2p8q_B Snurportin-1; heat repe 6.2 1.4E+02 0.0049 18.8 0.5 6 30-35 2-7 (40)
6 1bm4_A Protein (moloney murine 5.7 1.8E+02 0.0062 17.4 0.7 11 9-19 12-22 (32)
7 1zsg_B Serine/threonine-protei 5.6 2.3E+02 0.0078 16.0 1.1 9 24-32 4-12 (26)
8 3arc_X Photosystem II PSBX pro 5.0 6.8E+02 0.023 15.6 3.1 15 55-69 4-18 (39)
9 1u7g_A Probable ammonium trans 5.0 1.7E+03 0.059 20.3 7.7 58 53-110 275-332 (385)
10 1u7g_A Probable ammonium trans 4.9 1.6E+03 0.056 20.5 7.1 16 245-260 280-295 (385)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=15.48 E-value=62 Score=18.34 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.9
Q ss_pred CCCCCCCCCccc
Q 022935 23 SPSPKFPPRFSQ 34 (290)
Q Consensus 23 ~~~~~~~~~~~~ 34 (290)
-|.|+.|||=..
T Consensus 5 ~P~P~LPpRPaN 16 (26)
T 1wa7_B 5 MPTPPLPPRPAN 16 (26)
T ss_dssp CCCCCCCCCTTS
T ss_pred CCCCCCCCCccc
Confidence 378899998544
No 2
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=9.62 E-value=1.6e+02 Score=17.26 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=13.4
Q ss_pred CcchhhHHHHHHHHHHh
Q 022935 273 DDNLTLTITSIAVGSLV 289 (290)
Q Consensus 273 ~DNltIPl~s~~~~~ll 289 (290)
.-|+|+-+...+++|++
T Consensus 9 f~NFt~vLI~vlLi~ll 25 (31)
T 1jdm_A 9 FLNFTIVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34888888888888875
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=7.64 E-value=3.6e+02 Score=16.30 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 022935 157 LLTGPLYYAITITLACVIYW 176 (290)
Q Consensus 157 ~l~G~ly~~l~~~l~~~lf~ 176 (290)
.++|++...+.....+..+|
T Consensus 4 ~l~GTl~~V~ilg~~I~i~W 23 (34)
T 3s8f_C 4 KPKGALAVILVLTLTILVFW 23 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CccceehHHHHHHHHHHHHH
Confidence 35798887777777777776
No 4
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=7.47 E-value=1.7e+02 Score=17.59 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=9.5
Q ss_pred CCCCCCCCCcccc
Q 022935 23 SPSPKFPPRFSQF 35 (290)
Q Consensus 23 ~~~~~~~~~~~~~ 35 (290)
.+.|+-|||=|.=
T Consensus 2 k~~P~vPpRPs~~ 14 (32)
T 1k4u_P 2 KPQPAVPPRPSAD 14 (32)
T ss_dssp CCCCCCCCCCCHH
T ss_pred CCCCCCCCCCCHH
Confidence 3678899987653
No 5
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=6.15 E-value=1.4e+02 Score=18.81 Aligned_cols=6 Identities=67% Similarity=1.348 Sum_probs=3.0
Q ss_pred CCcccc
Q 022935 30 PRFSQF 35 (290)
Q Consensus 30 ~~~~~~ 35 (290)
||||||
T Consensus 2 PR~sqY 7 (40)
T 2p8q_B 2 PRLSQY 7 (40)
T ss_dssp CCGGGT
T ss_pred ccHHhh
Confidence 455554
No 6
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=5.68 E-value=1.8e+02 Score=17.44 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=8.7
Q ss_pred ccchhhhhhhh
Q 022935 9 SICPSIFLRRI 19 (290)
Q Consensus 9 ~~~~~~~~~~~ 19 (290)
.-||+.|+.|.
T Consensus 12 ~EsPs~FlerL 22 (32)
T 1bm4_A 12 NESPSAFLERL 22 (32)
T ss_dssp GGHHHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 35899999886
No 7
>1zsg_B Serine/threonine-protein kinase PAK 1; SH3-peptide complex, transferase; NMR {Homo sapiens}
Probab=5.57 E-value=2.3e+02 Score=15.99 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.3
Q ss_pred CCCCCCCCc
Q 022935 24 PSPKFPPRF 32 (290)
Q Consensus 24 ~~~~~~~~~ 32 (290)
|+|.+|+|=
T Consensus 4 ppP~~~~Rp 12 (26)
T 1zsg_B 4 PPPVIAPRP 12 (26)
T ss_dssp CSCCSCCCC
T ss_pred CCCCCCCCC
Confidence 677777774
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=4.99 E-value=6.8e+02 Score=15.57 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=7.2
Q ss_pred cchhhHHHHHHHHHH
Q 022935 55 PVLSDVCASAVSAAV 69 (290)
Q Consensus 55 ~~~~d~~~~~~~l~~ 69 (290)
|.+.+....++..+.
T Consensus 4 pSL~nFl~Sl~aG~v 18 (39)
T 3arc_X 4 PSLKGFFIGLLSGAV 18 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555555444443
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=4.98 E-value=1.7e+03 Score=20.31 Aligned_cols=58 Identities=14% Similarity=-0.044 Sum_probs=38.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHHHHHHhhc
Q 022935 53 QNPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLF 110 (290)
Q Consensus 53 ~~~~~~d~~~~~~~l~~~~~~l~l~~~l~~r~~~~~ei~RKliHi~~G~v~~l~~~~f 110 (290)
.+...+.|.+.++-++....+....+++.+|.+.|+.+.==-+|-..|.+-.+...+|
T Consensus 275 ~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glf 332 (385)
T 1u7g_A 275 ACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 332 (385)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHh
Confidence 3445666666666666666666566667777778888888889988887654444443
No 10
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=4.86 E-value=1.6e+03 Score=20.48 Aligned_cols=16 Identities=19% Similarity=-0.068 Sum_probs=8.1
Q ss_pred ccHHHHHHHHHHHHHH
Q 022935 245 CSWELVFGFLVVSLAS 260 (290)
Q Consensus 245 ~~~~~~~~~li~a~va 260 (290)
.||..+..+++.++++
T Consensus 280 ~p~~A~iiG~iag~i~ 295 (385)
T 1u7g_A 280 GVGGALIIGVVAGLAG 295 (385)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhHHHHHH
Confidence 4555555555555544
Done!