Query 022935
Match_columns 290
No_of_seqs 201 out of 1272
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 13:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022935.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022935hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 13.9 2.2E+02 0.016 24.2 7.5 60 52-111 272-331 (383)
2 d2dlqa3 g.37.1.1 (A:63-92) GLI 9.2 18 0.0013 19.6 -1.1 15 8-22 7-21 (30)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 6.3 5.6E+02 0.04 21.3 7.1 29 245-276 278-310 (383)
4 d1m56d_ f.23.8.1 (D:) Bacteria 5.9 1.5E+02 0.011 17.4 1.9 20 212-231 12-31 (42)
5 d1ijva_ g.9.1.1 (A:) Beta-defe 5.7 58 0.0042 18.3 -0.0 9 5-13 11-19 (36)
6 d1qled_ f.23.8.1 (D:) Bacteria 5.1 1.7E+02 0.013 17.2 1.9 20 212-231 13-32 (43)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 4.2 3.2E+02 0.024 14.6 4.4 18 159-176 5-22 (33)
8 d1msza_ d.68.7.1 (A:) SmuBP-2 3.5 1.9E+02 0.014 17.9 1.3 12 88-99 27-38 (62)
9 d2oara1 f.16.1.1 (A:10-118) Ga 3.5 3.7E+02 0.027 18.5 3.1 8 223-230 8-15 (109)
10 d2gvia1 d.81.3.1 (A:1-168) Unc 3.5 2.4E+02 0.017 20.9 2.0 20 189-208 60-79 (168)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.85 E-value=2.2e+02 Score=24.17 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=43.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHHHHHHhhcC
Q 022935 52 PQNPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFS 111 (290)
Q Consensus 52 ~~~~~~~d~~~~~~~l~~~~~~l~l~~~l~~r~~~~~ei~RKliHi~~G~v~~l~~~~f~ 111 (290)
..+...+.|.++++-.+....+....+++.+|.+.|+...==-+|-..|.+-.++..+|.
T Consensus 272 a~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 272 PACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 455666777777766666666666778777777788888888899988887656555553
No 2
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.15 E-value=18 Score=19.65 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=12.0
Q ss_pred cccchhhhhhhhhcc
Q 022935 8 FSICPSIFLRRIRVR 22 (290)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (290)
-|.|...|-||...|
T Consensus 7 cs~cqe~f~rrmelr 21 (30)
T d2dlqa3 7 CSVCQETFRRRMELR 21 (30)
T ss_dssp CSSSCCEESSHHHHH
T ss_pred eHHHHHHHHHHHhhe
Confidence 478999999987765
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.25 E-value=5.6e+02 Score=21.30 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=14.0
Q ss_pred ccHHHHHHHHHHHHHHH----HHhhcCCCCCCCcch
Q 022935 245 CSWELVFGFLVVSLASA----LVESLPISTKLDDNL 276 (290)
Q Consensus 245 ~~~~~~~~~li~a~vat----lvEalp~~~~~~DNl 276 (290)
.+|..+..+.+.++++. ..|. +.+.||-+
T Consensus 278 ~p~~A~~iG~i~g~i~~~~~~~l~~---~~~iDD~~ 310 (383)
T d1u7ga_ 278 GVGGALIIGVVAGLAGLWGVTMLKR---LLRVDDPC 310 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---HHCSCCGG
T ss_pred chhhHHHHHhhccHHHHHHHHHHHh---hccccccc
Confidence 35554445555555542 3332 12467764
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.86 E-value=1.5e+02 Score=17.39 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=13.5
Q ss_pred CCcchHHHHHHHHHHHHHHH
Q 022935 212 QNKSIAGSCAMASAGFLSSI 231 (290)
Q Consensus 212 ~~KS~eGSla~fi~s~~~~~ 231 (290)
++||.+|-+-+..=..+++.
T Consensus 12 QEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 12 QEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999998877554444443
No 5
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=5.73 E-value=58 Score=18.33 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=6.5
Q ss_pred ccccccchh
Q 022935 5 TANFSICPS 13 (290)
Q Consensus 5 ~~~~~~~~~ 13 (290)
|-|||-||-
T Consensus 11 ~c~~s~cpl 19 (36)
T d1ijva_ 11 QCLYSACPI 19 (36)
T ss_dssp EEESSCCCT
T ss_pred eeccccCcc
Confidence 568888883
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.13 E-value=1.7e+02 Score=17.15 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=13.2
Q ss_pred CCcchHHHHHHHHHHHHHHH
Q 022935 212 QNKSIAGSCAMASAGFLSSI 231 (290)
Q Consensus 212 ~~KS~eGSla~fi~s~~~~~ 231 (290)
++||.+|-+-+..=..+++.
T Consensus 13 QEkTF~gFi~~~t~~~i~~i 32 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSI 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999998877554444433
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.22 E-value=3.2e+02 Score=14.61 Aligned_cols=18 Identities=28% Similarity=0.791 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 022935 159 TGPLYYAITITLACVIYW 176 (290)
Q Consensus 159 ~G~ly~~l~~~l~~~lf~ 176 (290)
.|.+-....+.+.++.||
T Consensus 5 ~gal~vi~il~l~ilvfw 22 (33)
T d1xmec1 5 KGALAVILVLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 577666666777777787
No 8
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=1.9e+02 Score=17.87 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=8.8
Q ss_pred ccchHHHHHHHH
Q 022935 88 QKLNRKLVHISI 99 (290)
Q Consensus 88 ~ei~RKliHi~~ 99 (290)
....||++|-++
T Consensus 27 ~~~~R~~vH~lA 38 (62)
T d1msza_ 27 NSHDRLRVHQIA 38 (62)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 345799999754
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.54 E-value=3.7e+02 Score=18.47 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 022935 223 ASAGFLSS 230 (290)
Q Consensus 223 fi~s~~~~ 230 (290)
++++++++
T Consensus 8 LAVgvIiG 15 (109)
T d2oara1 8 LAVAVVIG 15 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 10
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=3.46 E-value=2.4e+02 Score=20.93 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=16.4
Q ss_pred HHHhhhHHHHhhhhcCCccc
Q 022935 189 LCAGDGFADVVGRRFGKRKL 208 (290)
Q Consensus 189 l~~GD~~AaiVG~~~Gr~k~ 208 (290)
-|..|++-.+-|..+||+++
T Consensus 60 ~C~~Davq~ltGcT~Gkg~L 79 (168)
T d2gvia1 60 GCFNDGAQAATGCTYGKGLF 79 (168)
T ss_dssp THHHHHHHHHHSCCTTTTCE
T ss_pred ccHHhHHHHHhcccccCCce
Confidence 45779999999999998765
Done!