Query 022936
Match_columns 290
No_of_seqs 121 out of 1305
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 2.3E-38 5.1E-43 278.1 25.2 279 2-289 18-302 (302)
2 KOG1444 Nucleotide-sugar trans 100.0 2.8E-37 6.1E-42 260.2 22.2 282 1-289 27-309 (314)
3 PTZ00343 triose or hexose phos 100.0 6E-36 1.3E-40 266.9 29.0 277 2-282 65-350 (350)
4 KOG1441 Glucose-6-phosphate/ph 100.0 7.8E-36 1.7E-40 257.0 14.9 282 2-289 33-316 (316)
5 PF08449 UAA: UAA transporter 100.0 1.7E-29 3.7E-34 221.7 26.3 262 15-286 30-303 (303)
6 PLN00411 nodulin MtN21 family 100.0 6E-29 1.3E-33 221.3 26.4 270 3-287 30-335 (358)
7 COG5070 VRG4 Nucleotide-sugar 100.0 5.9E-30 1.3E-34 204.0 13.3 275 1-286 21-302 (309)
8 KOG1442 GDP-fucose transporter 100.0 7.7E-31 1.7E-35 215.0 4.0 281 1-288 43-335 (347)
9 PRK11272 putative DMT superfam 100.0 2.9E-26 6.4E-31 200.3 29.1 260 4-284 26-289 (292)
10 PRK11453 O-acetylserine/cystei 100.0 4.9E-26 1.1E-30 199.5 29.8 262 4-283 22-290 (299)
11 PRK11689 aromatic amino acid e 100.0 1.6E-26 3.5E-31 202.2 25.3 252 4-282 22-289 (295)
12 PRK10532 threonine and homoser 100.0 1.2E-25 2.5E-30 196.6 28.8 256 4-288 30-289 (293)
13 TIGR00950 2A78 Carboxylate/Ami 100.0 2E-25 4.3E-30 191.9 27.8 251 3-275 6-259 (260)
14 PRK15430 putative chlorampheni 99.9 2.2E-24 4.8E-29 188.8 26.6 251 13-281 32-286 (296)
15 KOG1443 Predicted integral mem 99.9 6.4E-24 1.4E-28 177.2 17.7 271 4-280 34-315 (349)
16 PF06027 DUF914: Eukaryotic pr 99.9 6.1E-22 1.3E-26 173.1 25.8 267 6-285 33-310 (334)
17 TIGR03340 phn_DUF6 phosphonate 99.9 1.2E-21 2.7E-26 170.3 24.2 245 21-277 31-280 (281)
18 KOG1580 UDP-galactose transpor 99.9 3.4E-21 7.4E-26 155.3 15.7 257 13-279 49-312 (337)
19 TIGR00688 rarD rarD protein. T 99.9 1E-19 2.2E-24 156.2 23.5 228 5-255 21-255 (256)
20 COG0697 RhaT Permeases of the 99.9 1E-18 2.2E-23 152.0 29.6 247 17-281 36-288 (292)
21 KOG1581 UDP-galactose transpor 99.9 1.1E-19 2.4E-24 152.0 19.6 266 10-285 44-318 (327)
22 KOG1582 UDP-galactose transpor 99.8 8.1E-19 1.7E-23 144.4 14.3 267 6-282 63-334 (367)
23 COG5006 rhtA Threonine/homoser 99.8 4.3E-17 9.4E-22 133.1 22.3 253 6-286 32-288 (292)
24 TIGR00776 RhaT RhaT L-rhamnose 99.8 6.9E-17 1.5E-21 140.8 24.1 232 24-281 33-289 (290)
25 PF04142 Nuc_sug_transp: Nucle 99.8 3E-17 6.5E-22 138.8 21.0 212 47-270 13-243 (244)
26 KOG1583 UDP-N-acetylglucosamin 99.8 1.1E-18 2.3E-23 144.1 10.2 253 17-280 33-314 (330)
27 KOG2765 Predicted membrane pro 99.8 1.7E-17 3.8E-22 142.5 17.5 224 51-285 159-395 (416)
28 PF03151 TPT: Triose-phosphate 99.8 1.5E-17 3.2E-22 131.5 14.4 147 132-280 1-153 (153)
29 KOG2234 Predicted UDP-galactos 99.8 8E-16 1.7E-20 132.4 25.2 226 48-285 89-327 (345)
30 COG2962 RarD Predicted permeas 99.8 8.5E-16 1.8E-20 128.8 24.6 257 13-288 31-291 (293)
31 KOG4510 Permease of the drug/m 99.7 3.5E-18 7.6E-23 140.4 1.5 249 14-281 62-326 (346)
32 KOG3912 Predicted integral mem 99.5 1.4E-12 3.1E-17 108.3 17.2 219 52-280 87-334 (372)
33 TIGR00803 nst UDP-galactose tr 99.4 2.3E-12 5E-17 108.2 12.5 188 75-278 2-222 (222)
34 KOG4314 Predicted carbohydrate 99.4 1.5E-12 3.3E-17 102.9 9.5 221 51-285 53-281 (290)
35 PF00892 EamA: EamA-like trans 99.3 1.4E-11 3E-16 93.5 10.2 116 3-122 8-125 (126)
36 COG2510 Predicted membrane pro 99.2 2.4E-10 5.2E-15 84.2 11.5 135 132-279 4-138 (140)
37 KOG2766 Predicted membrane pro 99.2 9.4E-12 2E-16 102.2 1.9 256 4-281 36-300 (336)
38 PF13536 EmrE: Multidrug resis 99.2 3.1E-10 6.7E-15 84.9 9.9 105 22-127 2-110 (113)
39 PF00892 EamA: EamA-like trans 99.1 4.5E-10 9.7E-15 85.1 9.9 124 141-279 1-125 (126)
40 PF06800 Sugar_transport: Suga 99.0 1.1E-07 2.5E-12 80.6 21.3 214 44-277 36-268 (269)
41 COG2510 Predicted membrane pro 99.0 2.2E-09 4.8E-14 79.2 7.8 115 5-122 22-138 (140)
42 TIGR03340 phn_DUF6 phosphonate 98.9 4.4E-08 9.6E-13 85.2 14.0 133 133-280 3-135 (281)
43 PRK15430 putative chlorampheni 98.9 1E-07 2.2E-12 83.6 15.6 142 126-279 3-144 (296)
44 TIGR00688 rarD rarD protein. T 98.8 1.5E-07 3.2E-12 80.8 15.0 139 131-279 2-141 (256)
45 TIGR00950 2A78 Carboxylate/Ami 98.7 2.5E-07 5.4E-12 79.3 13.0 113 4-118 146-259 (260)
46 PF05653 Mg_trans_NIPA: Magnes 98.5 1.7E-06 3.6E-11 75.7 13.1 219 55-287 53-299 (300)
47 PLN00411 nodulin MtN21 family 98.5 2.1E-06 4.5E-11 77.0 14.0 136 132-279 14-155 (358)
48 PRK15051 4-amino-4-deoxy-L-ara 98.4 2.6E-06 5.7E-11 63.2 9.8 64 59-122 45-108 (111)
49 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.1E-05 2.3E-10 61.5 13.0 123 131-285 2-127 (129)
50 COG2962 RarD Predicted permeas 98.4 9.8E-06 2.1E-10 68.7 12.8 139 129-280 5-144 (293)
51 PTZ00343 triose or hexose phos 98.3 2.8E-05 6.1E-10 69.8 15.7 138 130-280 48-186 (350)
52 PF13536 EmrE: Multidrug resis 98.3 8.8E-06 1.9E-10 60.7 10.4 73 211-284 37-110 (113)
53 PRK11272 putative DMT superfam 98.3 2E-05 4.4E-10 68.9 13.4 108 17-124 177-286 (292)
54 TIGR00817 tpt Tpt phosphate/ph 98.3 4.5E-05 9.7E-10 67.0 15.3 128 138-279 9-136 (302)
55 PRK10532 threonine and homoser 98.3 1.8E-05 3.9E-10 69.3 12.5 108 13-123 173-281 (293)
56 PRK11689 aromatic amino acid e 98.2 2.1E-05 4.5E-10 68.9 11.7 79 45-123 209-287 (295)
57 PRK13499 rhamnose-proton sympo 98.2 0.00087 1.9E-08 59.4 21.6 234 45-280 67-341 (345)
58 PF03151 TPT: Triose-phosphate 98.1 5.2E-05 1.1E-09 59.4 11.5 118 4-122 18-152 (153)
59 PRK11453 O-acetylserine/cystei 98.0 0.00012 2.6E-09 64.3 12.3 80 45-124 208-288 (299)
60 PF08449 UAA: UAA transporter 97.9 0.00043 9.3E-09 60.9 14.2 130 143-286 12-142 (303)
61 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00039 8.5E-09 60.7 13.4 134 132-284 2-140 (290)
62 PRK15051 4-amino-4-deoxy-L-ara 97.9 0.00011 2.5E-09 54.4 8.3 53 227-279 56-108 (111)
63 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00018 3.9E-09 54.7 9.2 70 55-124 51-123 (129)
64 KOG2922 Uncharacterized conser 97.8 0.0002 4.3E-09 61.7 9.6 217 58-286 71-312 (335)
65 COG0697 RhaT Permeases of the 97.6 0.0033 7.1E-08 54.3 15.1 139 131-284 7-147 (292)
66 PRK10452 multidrug efflux syst 97.5 0.00073 1.6E-08 50.6 8.5 71 54-124 33-104 (120)
67 PF04657 DUF606: Protein of un 97.5 0.005 1.1E-07 47.5 13.3 130 133-277 3-138 (138)
68 COG4975 GlcU Putative glucose 97.5 0.0001 2.2E-09 61.1 3.2 219 44-282 52-287 (288)
69 PRK09541 emrE multidrug efflux 97.4 0.0014 3.1E-08 48.3 8.7 69 56-124 35-104 (110)
70 PRK10452 multidrug efflux syst 97.4 0.0013 2.8E-08 49.2 8.2 59 227-285 49-108 (120)
71 PRK09541 emrE multidrug efflux 97.3 0.0014 3E-08 48.4 7.6 57 227-283 49-106 (110)
72 PRK10650 multidrug efflux syst 97.3 0.0098 2.1E-07 43.7 11.7 68 55-122 39-107 (109)
73 COG2076 EmrE Membrane transpor 97.2 0.0027 5.8E-08 46.1 8.2 70 55-124 34-104 (106)
74 PF06027 DUF914: Eukaryotic pr 97.2 0.011 2.4E-07 52.4 13.8 73 208-281 80-152 (334)
75 PRK11431 multidrug efflux syst 97.2 0.0039 8.4E-08 45.6 8.9 69 55-123 33-102 (105)
76 PRK10650 multidrug efflux syst 97.1 0.014 3.1E-07 42.8 11.2 53 227-279 54-107 (109)
77 PF04142 Nuc_sug_transp: Nucle 97.1 0.0023 4.9E-08 54.4 7.4 73 212-284 21-93 (244)
78 PF05653 Mg_trans_NIPA: Magnes 97.0 0.0048 1E-07 54.1 9.3 123 129-285 5-127 (300)
79 COG2076 EmrE Membrane transpor 96.9 0.0069 1.5E-07 44.0 7.4 55 227-281 49-104 (106)
80 PF00893 Multi_Drug_Res: Small 96.9 0.005 1.1E-07 44.0 6.7 58 57-114 35-93 (93)
81 KOG2234 Predicted UDP-galactos 96.8 0.047 1E-06 48.1 13.7 141 136-281 20-165 (345)
82 PRK11431 multidrug efflux syst 96.8 0.0092 2E-07 43.6 8.0 54 227-280 48-102 (105)
83 COG5006 rhtA Threonine/homoser 96.7 0.022 4.8E-07 47.7 9.9 67 55-121 213-280 (292)
84 PRK13499 rhamnose-proton sympo 96.6 0.031 6.7E-07 49.7 11.0 135 130-280 6-153 (345)
85 KOG4510 Permease of the drug/m 96.5 0.002 4.4E-08 54.2 2.7 68 213-280 102-169 (346)
86 PF00893 Multi_Drug_Res: Small 96.4 0.011 2.4E-07 42.3 5.7 45 227-271 48-93 (93)
87 PF06800 Sugar_transport: Suga 96.1 0.063 1.4E-06 46.0 9.9 71 49-119 193-267 (269)
88 PF10639 UPF0546: Uncharacteri 96.0 0.023 5E-07 41.9 5.8 61 61-121 51-112 (113)
89 COG3238 Uncharacterized protei 95.1 1.2 2.6E-05 34.6 12.8 137 131-280 5-146 (150)
90 COG4975 GlcU Putative glucose 95.0 0.025 5.4E-07 47.2 3.4 132 132-283 3-139 (288)
91 KOG2765 Predicted membrane pro 94.6 0.07 1.5E-06 47.3 5.4 77 209-285 160-236 (416)
92 PF04657 DUF606: Protein of un 94.5 0.72 1.6E-05 35.5 10.3 104 16-120 29-138 (138)
93 KOG1441 Glucose-6-phosphate/ph 93.9 0.073 1.6E-06 46.8 4.1 116 6-123 183-307 (316)
94 TIGR00803 nst UDP-galactose tr 93.0 0.18 3.9E-06 42.1 4.9 63 58-120 159-221 (222)
95 PF10639 UPF0546: Uncharacteri 91.9 0.61 1.3E-05 34.5 5.9 51 228-278 61-112 (113)
96 KOG1580 UDP-galactose transpor 91.7 1.1 2.3E-05 37.5 7.5 71 214-284 90-161 (337)
97 COG5070 VRG4 Nucleotide-sugar 91.5 1.7 3.8E-05 36.0 8.6 102 13-115 182-288 (309)
98 PF06379 RhaT: L-rhamnose-prot 91.3 3 6.6E-05 36.9 10.4 24 130-153 6-29 (344)
99 PF07857 DUF1632: CEO family ( 90.7 0.55 1.2E-05 40.0 5.2 132 132-285 1-139 (254)
100 KOG1581 UDP-galactose transpor 89.9 11 0.00025 32.8 12.4 134 142-285 25-160 (327)
101 KOG4314 Predicted carbohydrate 89.1 0.39 8.5E-06 38.9 3.0 62 222-283 67-128 (290)
102 KOG2922 Uncharacterized conser 89.0 0.21 4.5E-06 43.5 1.4 124 129-286 19-142 (335)
103 COG3238 Uncharacterized protei 87.9 8.8 0.00019 29.9 9.6 107 14-121 31-144 (150)
104 PRK02237 hypothetical protein; 78.1 4.6 0.0001 29.4 4.2 47 236-282 61-107 (109)
105 PF02694 UPF0060: Uncharacteri 76.0 5 0.00011 29.1 3.9 47 236-282 59-105 (107)
106 PRK02237 hypothetical protein; 75.6 7 0.00015 28.4 4.5 41 84-124 66-106 (109)
107 PF02694 UPF0060: Uncharacteri 75.6 6.4 0.00014 28.6 4.3 41 84-124 64-104 (107)
108 KOG3912 Predicted integral mem 75.4 41 0.00089 29.2 9.7 53 228-280 106-158 (372)
109 KOG1444 Nucleotide-sugar trans 72.4 68 0.0015 28.2 12.6 133 133-280 14-149 (314)
110 PF06379 RhaT: L-rhamnose-prot 72.2 73 0.0016 28.5 21.8 234 45-280 67-340 (344)
111 COG1742 Uncharacterized conser 61.9 14 0.00031 26.7 3.7 40 85-124 66-105 (109)
112 PF04342 DUF486: Protein of un 55.3 53 0.0011 23.9 5.7 61 61-121 45-106 (108)
113 TIGR00905 2A0302 transporter, 55.1 1.8E+02 0.0039 27.1 16.7 24 263-286 417-440 (473)
114 KOG1442 GDP-fucose transporter 51.7 13 0.00029 32.0 2.5 53 226-278 120-172 (347)
115 PF04342 DUF486: Protein of un 47.5 24 0.00051 25.7 2.9 28 249-276 77-104 (108)
116 KOG1583 UDP-N-acetylglucosamin 44.5 18 0.00038 31.3 2.2 69 217-285 73-142 (330)
117 KOG4831 Unnamed protein [Funct 43.1 17 0.00037 26.4 1.7 57 65-121 66-123 (125)
118 TIGR03810 arg_ornith_anti argi 39.9 3.1E+02 0.0068 25.5 16.6 23 263-285 412-434 (468)
119 TIGR02865 spore_II_E stage II 39.0 4.2E+02 0.0092 26.7 14.6 41 81-121 14-54 (764)
120 PF06946 Phage_holin_5: Phage 36.7 1.5E+02 0.0033 21.0 6.4 61 226-286 22-86 (93)
121 PF04971 Lysis_S: Lysis protei 36.5 25 0.00054 23.3 1.5 17 273-289 47-63 (68)
122 KOG1582 UDP-galactose transpor 34.5 3E+02 0.0064 24.0 7.9 50 76-125 285-334 (367)
123 COG1742 Uncharacterized conser 34.4 49 0.0011 24.0 2.8 46 237-282 61-106 (109)
124 KOG1443 Predicted integral mem 33.4 2.2E+02 0.0047 25.2 7.1 60 62-121 254-313 (349)
125 PF08693 SKG6: Transmembrane a 28.6 53 0.0011 19.3 1.9 18 267-284 22-39 (40)
126 PF07331 TctB: Tripartite tric 27.9 2.6E+02 0.0056 20.9 11.5 41 17-57 38-78 (141)
127 COG4657 RnfA Predicted NADH:ub 27.0 3.2E+02 0.007 21.7 11.4 91 63-153 55-154 (193)
128 PRK13108 prolipoprotein diacyl 25.4 2.8E+02 0.0061 26.0 7.0 23 260-282 254-276 (460)
129 PLN02776 prenyltransferase 25.2 5E+02 0.011 23.3 15.9 35 228-263 118-152 (341)
130 cd01324 cbb3_Oxidase_CcoQ Cyto 25.1 53 0.0012 20.1 1.5 20 267-286 18-37 (48)
131 TIGR01167 LPXTG_anchor LPXTG-m 23.8 1.1E+02 0.0024 16.6 2.7 14 260-273 10-23 (34)
132 PF05545 FixQ: Cbb3-type cytoc 23.5 69 0.0015 19.5 1.9 19 267-285 17-35 (49)
133 PF02439 Adeno_E3_CR2: Adenovi 23.1 70 0.0015 18.5 1.6 23 265-287 13-35 (38)
134 PF06946 Phage_holin_5: Phage 22.9 2.9E+02 0.0062 19.6 5.8 34 87-121 15-48 (93)
135 PF15102 TMEM154: TMEM154 prot 20.9 82 0.0018 24.4 2.2 22 265-286 66-87 (146)
136 PF04306 DUF456: Protein of un 20.8 3.9E+02 0.0085 20.4 8.5 71 206-286 31-103 (140)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=2.3e-38 Score=278.06 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=228.6
Q ss_pred eeeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Q 022936 2 ILVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVT 81 (290)
Q Consensus 2 ~~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 81 (290)
++.||++++ ++++|..+++.|+.++.+.+.+.+..+..++++.++++++..++.|++++.++.++|.+++|+++++++
T Consensus 18 ~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 18 NIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 468999998 688899999999999987776654334445567789999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022936 82 VLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVT 161 (290)
Q Consensus 82 ~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~ 161 (290)
++++++|+++++++++++|||++++++.++++++.|+.+....|.+++..|+++++.+++++|+|+++.||.+++
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~----- 170 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI----- 170 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 999999999999999999999999999999999999998876666777789999999999999999999998652
Q ss_pred ccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhh-cC-C---CCcchhHHHHHHHHHH-HHHHHHHHHHHHHhhcCcc
Q 022936 162 KSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RT-P---LLRLPSFWLVMTLSGF-LGLAISFTSMWFLHQTGAT 235 (290)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 235 (290)
+++++.+...|++..+.+.+.|.....++.+... +. + .......+...+..+. +....+...+.+++++||+
T Consensus 171 --~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~ 248 (302)
T TIGR00817 171 --KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL 248 (302)
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 2578889999999988888888876555432111 00 0 0111122332333443 2233344556799999999
Q ss_pred hhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccCC
Q 022936 236 TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 289 (290)
Q Consensus 236 ~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~~ 289 (290)
++++.+++||++++++|++++||++|..+++|.++++.|+.+|++.|+||+++|
T Consensus 249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~~ 302 (302)
T TIGR00817 249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK 302 (302)
T ss_pred HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 999999999999999999999999999999999999999999998877666654
No 2
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-37 Score=260.22 Aligned_cols=282 Identities=41% Similarity=0.690 Sum_probs=255.1
Q ss_pred CeeeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Q 022936 1 MILVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMV 80 (290)
Q Consensus 1 ~~~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 80 (290)
|+++||++++.++||-.+++..+|.+++.+.++.+...|..+.++++++..|+++|.++++.++.+.+.++++|+|++++
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~ 106 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF 106 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence 57899999997777655666669999999999999988988999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 81 TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
+++|+.+|+++++.+..++|.||++..|.++....+|.......|.+++..|+.|++.+.++.+.+.++.||..+
T Consensus 107 tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd----- 181 (314)
T KOG1444|consen 107 TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVD----- 181 (314)
T ss_pred HHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 999999999999999999999999999999999999999999999999988999999999999999999999876
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhh-hcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSL 239 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si 239 (290)
..+.+.+++++|+++.+.|.+.......||++.. .+.+.+....++..+.++|++++.++|+.+++.+.+|+++.++
T Consensus 182 --~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~ti 259 (314)
T KOG1444|consen 182 --SANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTI 259 (314)
T ss_pred --cccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceee
Confidence 3467889999999999999999999999998722 2334455667788899999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccCC
Q 022936 240 VGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 289 (290)
Q Consensus 240 ~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~~ 289 (290)
++......+.+.+.+++|++.++.+.+|+.+.+.|.++|++.+.|+|+.+
T Consensus 260 vG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 260 VGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred hhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99766777777777777899999999999999999999999987776654
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=6e-36 Score=266.87 Aligned_cols=277 Identities=14% Similarity=0.202 Sum_probs=227.6
Q ss_pred eeeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCccc--HHHHHHHHHHHHHHHHHHHHhhhhhcccchhH
Q 022936 2 ILVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLT--WRLIKVWLPVNVIFVGMLITSMFSLKYINVAM 79 (290)
Q Consensus 2 ~~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 79 (290)
++.||++++ .+|+|.+++++|++++.+.+.+++..+.+++++.+ +++++..++.|+++...+...+.|++++++++
T Consensus 65 ~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~ 142 (350)
T PTZ00343 65 VVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSF 142 (350)
T ss_pred HHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 467999999 68999999999999998766555544444444553 45789999999998877777889999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022936 80 VTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQ 159 (290)
Q Consensus 80 ~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~ 159 (290)
+++++++.|+++++++++++|||++++++.+++++++|+.++...|.++++.|++++++|++++|+|+++.||.+++.++
T Consensus 143 ~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~ 222 (350)
T PTZ00343 143 THVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSE 222 (350)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999998864221
Q ss_pred ccccCCCChhHHHHHHHHhHHHHHHHHHHHhcch--hhhh-----cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022936 160 VTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DYLS-----RTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT 232 (290)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (290)
+++++++.+...+.+..+..+++|.....|+. ...+ ..+.+....++..++.++++.+..+.+.+.+++++
T Consensus 223 --~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~ 300 (350)
T PTZ00343 223 --IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKV 300 (350)
T ss_pred --ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11245666666777888888888877654422 1111 01111112334456667888888888888999999
Q ss_pred CcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 233 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 233 ~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
+|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|++.|
T Consensus 301 s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 301 NQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred chhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999998764
No 4
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-36 Score=257.00 Aligned_cols=282 Identities=20% Similarity=0.378 Sum_probs=244.3
Q ss_pred eeeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccH-HHHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Q 022936 2 ILVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTW-RLIKVWLPVNVIFVGMLITSMFSLKYINVAMV 80 (290)
Q Consensus 2 ~~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 80 (290)
++.||++++.++|++|.+++..|.+++.+........+..+.++.++ ..++..+++|++++++..++|.|+++++++++
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~ 112 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY 112 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence 67899999988999999999999999999888887777766666544 57899999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 81 TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
|++|+++|+++.++++++.+|++++..+.+++.+..|+.+.+..|.++|+.|...++++.+..+.++++.|+.++.
T Consensus 113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~---- 188 (316)
T KOG1441|consen 113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTS---- 188 (316)
T ss_pred HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred cccCCCChhHHHHHHHHhHHHHHH-HHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGV-LLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSL 239 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si 239 (290)
|+++.|+.+..+|++-.++..++ |+....+............+..++.. ++..++++.+|...++.++++||.|.++
T Consensus 189 -~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sv~~f~~Nls~f~~ig~tSalT~~V 266 (316)
T KOG1441|consen 189 -KGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL-LLNSVLAFLLNLSAFLVIGRTSALTYSV 266 (316)
T ss_pred -cccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH-HHHHHHHHHHHHHHHHHHcccCchhhhh
Confidence 34678999999999988888887 66543222111100111112223433 4444999999999999999999999999
Q ss_pred hhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccCC
Q 022936 240 VGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 289 (290)
Q Consensus 240 ~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~~ 289 (290)
.+.+|.++.++.|+++|+|+.|+.+..|+++.++|+.+|++.|.|+++++
T Consensus 267 ~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 267 AGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred hccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999999999999998887653
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=1.7e-29 Score=221.68 Aligned_cols=262 Identities=19% Similarity=0.202 Sum_probs=222.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHH
Q 022936 15 DAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVG 94 (290)
Q Consensus 15 ~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll 94 (290)
++|.++++.|+....+...+.....+ .++.++..++++.+.++++.++..++|.|++|+|.|++++.|++.|++++++
T Consensus 30 ~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~ 107 (303)
T PF08449_consen 30 PFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMIL 107 (303)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence 47999999999999887766554333 2233445578889999999999999999999999999999999999999999
Q ss_pred HHHHhCccCChHHHHHHHHHHHhhhhheecccc----c------chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC
Q 022936 95 EMYLFNKRHDNRVWAALFLMIISAISGGITDLS----F------HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSG 164 (290)
Q Consensus 95 ~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~----~------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~ 164 (290)
+.+++|||++++++.++++..+|+++....|.+ . +..|+++.+.+.+++|++.++.+|.++++
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~------- 180 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY------- 180 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 999999999999999999999999998765431 1 12399999999999999999999998743
Q ss_pred CCChhHHHHHHHHhHHHHHHHHHHH--hcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhh
Q 022936 165 NLNEFSMVLLNNSLSLPLGVLLVIV--FNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGS 242 (290)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~ 242 (290)
+.+++++++|+|..+.|...+.... .+|..+..+... .++..+..++..++++...+...+..+++.||++.+++.+
T Consensus 181 ~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t 259 (303)
T PF08449_consen 181 GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTT 259 (303)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHH
Confidence 4588999999999999998888777 566554433322 2334566777778888777777788999999999999999
Q ss_pred hhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 243 LNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 243 ~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
+|++.++++++++||+++++.||.|+++++.|..+|++.|+|+|
T Consensus 260 ~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 260 LRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999888765
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=6e-29 Score=221.28 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=202.2
Q ss_pred eeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcC-c-cccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Q 022936 3 LVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLG-V-ISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMV 80 (290)
Q Consensus 3 ~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 80 (290)
...|..++ .+.+ |..+.++|+.++.+++.+....+ + .+.++.+++++..+...+++....+.+.+.+++|++++.+
T Consensus 30 ~~~k~a~~-~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~a 107 (358)
T PLN00411 30 TLFKVATS-KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLA 107 (358)
T ss_pred HHHHHHHH-CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 34577776 5888 99999999999987776654322 2 2334456778888888887776666788999999999999
Q ss_pred HHHHhhHHHHHHHHHHHH------hCccCChHHHHHHHHHHHhhhhheec-cc-----------------------ccc-
Q 022936 81 TVLKNVTNVITAVGEMYL------FNKRHDNRVWAALFLMIISAISGGIT-DL-----------------------SFH- 129 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~------~~e~~~~~~~~~~~l~~~G~~l~~~~-~~-----------------------~~~- 129 (290)
.++.+++|++++++++++ +|||++++++.++++++.|+.++... +. ..+
T Consensus 108 sll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (358)
T PLN00411 108 SAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDW 187 (358)
T ss_pred HHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccH
Confidence 999999999999999999 69999999999999999999986431 11 012
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCh-hHHHHHHHHhHHHHHHHHHHHhcchh-hhhcCCCCcchhH
Q 022936 130 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE-FSMVLLNNSLSLPLGVLLVIVFNEVD-YLSRTPLLRLPSF 207 (290)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (290)
..|+++++.+++++|+|++..||..++ +++ ....+++...+.....+.....++.+ ..+. . ..+...
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~---------~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~ 256 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSE---------YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI-I-HFDITL 256 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce-e-ccchHH
Confidence 349999999999999999999998663 322 24444444444433333333332211 1111 1 112233
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 208 WLVMTLSGFLGLAISFT-SMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
+ .+++.++.+. ..|. .++++++.+|.+++++.+++|++++++|++++||++++.+++|.++++.|+.+.++.|+||.
T Consensus 257 ~-~i~y~~i~t~-lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 257 I-TIVTMAIITS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred H-HHHHHHHHHH-HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3 3566676654 4554 45899999999999999999999999999999999999999999999999999998877774
Q ss_pred c
Q 022936 287 S 287 (290)
Q Consensus 287 ~ 287 (290)
+
T Consensus 335 ~ 335 (358)
T PLN00411 335 K 335 (358)
T ss_pred h
Confidence 3
No 7
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.97 E-value=5.9e-30 Score=204.01 Aligned_cols=275 Identities=32% Similarity=0.581 Sum_probs=238.8
Q ss_pred CeeeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Q 022936 1 MILVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMV 80 (290)
Q Consensus 1 ~~~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 80 (290)
|++.|||+++..+|.-.+++.+.|..++.+.+.++...|..++ +..+.|+++|.+++...+.+.+-.+++|.+++.+
T Consensus 21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~f---R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEF---RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhe---ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHH
Confidence 5678999999989988899999999999888888776664444 3567888999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccc-------hhhHHHHHHHHHHHHHHHHHHHHH
Q 022936 81 TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFH-------AVGYAWQIINCFLTASYSLTLRRV 153 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~-------~~G~~~~l~s~~~~a~~~v~~~~~ 153 (290)
++.++++.+.++..+..++|.|.+..+..+-.+.++......++|.+-. ..|++|.+...+..+.|-...||.
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkr 177 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKR 177 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988886321 279999999999999999999987
Q ss_pred hhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022936 154 MDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTG 233 (290)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 233 (290)
.+.. +....+.+||+|..+.|+++.+.+..|||+...-..... +.....+..+|++++...|+.-|+++.+|
T Consensus 178 i~lt-------Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~-~d~l~am~ISgl~svgiSy~saWcvrVtS 249 (309)
T COG5070 178 IKLT-------NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS-VDSLMAMFISGLCSVGISYCSAWCVRVTS 249 (309)
T ss_pred hccc-------ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC-hHHHHHHHHHHHHHhhhhhccceeEeehh
Confidence 6532 345578899999999999999999999987542222222 22234578899999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 234 ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 234 ~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
+++.++++.+++....+.|.++|||+.+.+.+..+.+..++...|.+.|++++
T Consensus 250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877654
No 8
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.7e-31 Score=215.02 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=248.2
Q ss_pred Ceeeehhhhhc--cCCChhHHHHHHHHHHHHHHHHHHHHc-----CccccCc--ccHHHHHHHHHHHHHHHHHHHHhhhh
Q 022936 1 MILVNKFVLSG--YNFDAGISLMVYQNFISVVTVTILSFL-----GVISTEP--LTWRLIKVWLPVNVIFVGMLITSMFS 71 (290)
Q Consensus 1 ~~~~nK~~~~~--~~~~~p~~l~~~r~~~~~~~l~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a 71 (290)
+++.||++++. ...+.|.+.++.|++++..++..+... ++++.++ +|-+..++..|+++.+.++..++|++
T Consensus 43 ~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlc 122 (347)
T KOG1442|consen 43 LVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLC 122 (347)
T ss_pred hhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhcccee
Confidence 46899999996 357789999999999998777665432 2333343 55667889999999999999999999
Q ss_pred hcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc---cccchhhHHHHHHHHHHHHHHHH
Q 022936 72 LKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTASYSL 148 (290)
Q Consensus 72 l~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v 148 (290)
++|+++++|.+-|+++.+|+.++++.++|+|-+.....++.+++.|-.+...+| ...++.|.++++.|+++.|+..+
T Consensus 123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnai 202 (347)
T KOG1442|consen 123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAI 202 (347)
T ss_pred hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888877666 45678999999999999999999
Q ss_pred HHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 022936 149 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWF 228 (290)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (290)
+.||.+...++ ..|...+|+|..++.+.+|...+.||....+.+|......||..+.++|+++|.++|...+=
T Consensus 203 ytkk~l~~v~~-------~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~Q 275 (347)
T KOG1442|consen 203 YTKKVLPPVGD-------CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQ 275 (347)
T ss_pred hhheecccccC-------eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEE
Confidence 99998653221 46889999999999999999999999988888887777889999999999999999988888
Q ss_pred HhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccC
Q 022936 229 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 288 (290)
Q Consensus 229 i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~ 288 (290)
+|.+||.|+.+-++.|.....++++.+.+|.-+...|-|-.+++.|..+|++.|++|+++
T Consensus 276 IK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 276 IKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred EEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988877544
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=2.9e-26 Score=200.30 Aligned_cols=260 Identities=12% Similarity=0.012 Sum_probs=201.7
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHH-HHHHHHhhhhh-cccchhHHH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIF-VGMLITSMFSL-KYINVAMVT 81 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al-~~~~~~~~~ 81 (290)
..|+..+ +.+ |..++++|+.++.+++.+....++.+ ..++++++.....+.+. ...+.+.+.+. ++++++.++
T Consensus 26 ~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~ 100 (292)
T PRK11272 26 VIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAA 100 (292)
T ss_pred HHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 3576666 788 99999999999987776654433322 22456777777777664 56677778888 999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 82 VLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 82 ~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
++.++.|+++.+++++ +|||++++++.++++++.|+.+...+ +.+.+..|+++++.+++++|.|.++.||..+
T Consensus 101 ~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~----- 174 (292)
T PRK11272 101 VVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPL----- 174 (292)
T ss_pred HHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 9999999999999986 79999999999999999999988643 3344567999999999999999999998632
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSL 239 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~si 239 (290)
+ ++.....++...+.+...+.....++.. +...+...|..+++.++.+....+.. ++++++.++.+.++
T Consensus 175 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~ 244 (292)
T PRK11272 175 ----P-VGMMAGAAEMLAAGVVLLIASLLSGERL-----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATS 244 (292)
T ss_pred ----C-cchHHHHHHHHHHHHHHHHHHHHcCCcc-----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 1 2233455666666666665544332211 11112344677788888887777755 47999999999999
Q ss_pred hhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecc
Q 022936 240 VGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 240 ~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
+..++|+.+++++++++||++++.+++|.++++.|+++.++.++|
T Consensus 245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998765443
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=4.9e-26 Score=199.53 Aligned_cols=262 Identities=10% Similarity=0.085 Sum_probs=190.4
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHH-HHHHHHhhhhhcc-cchhHHH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIF-VGMLITSMFSLKY-INVAMVT 81 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~-~~~~~~~ 81 (290)
..|..++ +++ |..+.++|+.++.+.+..... + ++.+ ++..+..+++. .....+.+.++++ .+++.+.
T Consensus 22 ~~k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~--~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~ 90 (299)
T PRK11453 22 VIKVGLH--NMP-PLMLAGLRFMLVAFPAIFFVA--R---PKVP---LNLLLGYGLTISFGQFAFLFCAINFGMPAGLAS 90 (299)
T ss_pred HHHHHHh--cCC-HHHHHHHHHHHHHHHHHHHhc--C---CCCc---hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4577776 789 999999999887655433321 1 1112 22334445543 3455566778887 6889999
Q ss_pred HHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc---cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022936 82 VLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAK 158 (290)
Q Consensus 82 ~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~ 158 (290)
++.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+.+..|+.+++.+++++|.|.++.||..++
T Consensus 91 ~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~-- 168 (299)
T PRK11453 91 LVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSH-- 168 (299)
T ss_pred HHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 99999999999999999999999999999999999999886432 2234579999999999999999999997542
Q ss_pred hccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhh-cCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcCcch
Q 022936 159 QVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATT 236 (290)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 236 (290)
+.........+++...+...........++..... ... ..++..|..+++.++++....|..+ +++++.+|.+
T Consensus 169 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~ 243 (299)
T PRK11453 169 ----STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLV-TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWR 243 (299)
T ss_pred ----cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 11122233344444433332222222222211110 011 1234457788999999998888765 7899999999
Q ss_pred hhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeec
Q 022936 237 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 283 (290)
Q Consensus 237 ~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~ 283 (290)
.+.+..++|++++++|++++||++++.+++|.++++.|+.+..+.++
T Consensus 244 ~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 244 VAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999998777655
No 11
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=1.6e-26 Score=202.20 Aligned_cols=252 Identities=12% Similarity=0.050 Sum_probs=181.8
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhc----ccchhH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLK----YINVAM 79 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----~~~~~~ 79 (290)
..|..++ ++| |..+.++|+..+.+++.+.. ++ ++.++++++..+..++.+...+.+.+.+++ +.++..
T Consensus 22 ~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~--~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~ 93 (295)
T PRK11689 22 LIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTV--GF---PRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIE 93 (295)
T ss_pred HHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHc--cc---cccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchH
Confidence 4688777 789 99999999999988776542 11 122222233333334445566666666664 467788
Q ss_pred HHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccc-----------cchhhHHHHHHHHHHHHHHHH
Q 022936 80 VTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS-----------FHAVGYAWQIINCFLTASYSL 148 (290)
Q Consensus 80 ~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~-----------~~~~G~~~~l~s~~~~a~~~v 148 (290)
+.++.++.|+++.+++++++|||++++++.++++++.|+.++..++.+ .+..|+++++.+++++|.|++
T Consensus 94 a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v 173 (295)
T PRK11689 94 VGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCN 173 (295)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999988654321 234699999999999999999
Q ss_pred HHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHH-HHHH
Q 022936 149 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF-TSMW 227 (290)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 227 (290)
+.||..+ +.++....+ .. +...+.+.....++.. .+ .+...|..+++.++. ....| ..++
T Consensus 174 ~~k~~~~---------~~~~~~~~~--~~-~~~~l~~~~~~~~~~~----~~--~~~~~~~~l~~~~~~-t~~~~~l~~~ 234 (295)
T PRK11689 174 VTRKYAR---------GKNGITLFF--IL-TALALWIKYFLSPQPA----MV--FSLPAIIKLLLAAAA-MGFGYAAWNV 234 (295)
T ss_pred HHhhccC---------CCCchhHHH--HH-HHHHHHHHHHHhcCcc----cc--CCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999743 234443322 12 2222222222222211 11 122345566677754 45455 4458
Q ss_pred HHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 228 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 228 ~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
++|+.+|.+++...+++|++++++|++++||++++.+++|.++++.|+.+....+
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999988775543
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=1.2e-25 Score=196.59 Aligned_cols=256 Identities=12% Similarity=0.018 Sum_probs=196.7
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVL 83 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i 83 (290)
..|+.++ ++| |..+.++|+..+.+++.+..+.+ .++.++|+++..+..++++...+.+.+++++++|++.+.++
T Consensus 30 ~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l 103 (293)
T PRK10532 30 LAKSLFP--LVG-APGVTALRLALGTLILIAIFKPW---RLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVAL 103 (293)
T ss_pred HHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHH---hccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4688887 688 99999999999987776554221 12446778888888888888888899999999999999999
Q ss_pred HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec--c-cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 84 KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT--D-LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 84 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~--~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
.++.|+++.+++ +||+++. ..+.+++.|+.++... + .+.+..|+++++.+++++|.|.+..||..+
T Consensus 104 ~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~----- 172 (293)
T PRK10532 104 EFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGA----- 172 (293)
T ss_pred HHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999877 3666554 4456778999876532 2 223567999999999999999999999854
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSL 239 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~si 239 (290)
+.++... .+....+.....+.....++ . . ..+...|...++.|+++...+|.. ++++++.+|.++++
T Consensus 173 ----~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~-----~-~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~ 240 (293)
T PRK10532 173 ----EHGPATV-AIGSLIAALIFVPIGALQAG-E-----A-LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGT 240 (293)
T ss_pred ----cCCchHH-HHHHHHHHHHHHHHHHHccC-c-----c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 2345444 34445555555554443221 0 0 112234555678888888888865 58999999999999
Q ss_pred hhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccC
Q 022936 240 VGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 288 (290)
Q Consensus 240 ~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~ 288 (290)
+.+++|++++++|++++||++++.+++|.++++.|++.+.+..+||.+-
T Consensus 241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999998776665443
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=2e-25 Score=191.90 Aligned_cols=251 Identities=13% Similarity=0.055 Sum_probs=196.6
Q ss_pred eeehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHH-HHHHHHHHhhhhhcccchhHHH
Q 022936 3 LVNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNV-IFVGMLITSMFSLKYINVAMVT 81 (290)
Q Consensus 3 ~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~ 81 (290)
+..|+.+++ ..| |..+.+.|++++.+.+.+....+ .++++++.....+. ...+.+.+.++|+++++++.++
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 356888873 566 99999999999887776554332 23445555556654 4678999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc-cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 82 VLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 82 ~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
++.++.|+++++++++++|||++++++.++.+++.|+.++..++ .+.+..|+.+++.++++++.+.++.||..++
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~---- 153 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK---- 153 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc----
Confidence 99999999999999999999999999999999999999876443 3445689999999999999999999998652
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSL 239 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~si 239 (290)
.+.++.....+.+..+.+...+.....++.. . . +...|..+++.++++....+.. ++++++.++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 154 ---EGPELLQFTGWVLLLGALLLLPFAWFLGPNP---Q---A-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC---C---c-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 1112333333556667776666655443221 1 1 2334556777788777666654 57999999999999
Q ss_pred hhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhh
Q 022936 240 VGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 275 (290)
Q Consensus 240 ~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~ 275 (290)
..+.+|+.+.+++++++||++++.+++|+++++.|+
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999886
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=2.2e-24 Score=188.77 Aligned_cols=251 Identities=11% Similarity=0.048 Sum_probs=174.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHcCcc-cc--Ccc-cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHH
Q 022936 13 NFDAGISLMVYQNFISVVTVTILSFLGVI-ST--EPL-TWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTN 88 (290)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p 88 (290)
+++ |..+.++|+.++.+++......++. +. ++. +++++......+......+.+++++++++|++.+.++.++.|
T Consensus 32 ~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P 110 (296)
T PRK15430 32 YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINP 110 (296)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 688 9999999999998765544332211 10 011 233333333444557779999999999999999999999999
Q ss_pred HHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCh
Q 022936 89 VITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE 168 (290)
Q Consensus 89 i~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 168 (290)
+++.+++++++|||++++++.++++++.|+.++..++.+. ..+++.+++++|.|.+..||..++ ...+.
T Consensus 111 i~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i~~r~~~~~-------~~~~~ 179 (296)
T PRK15430 111 LVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGLVRKKIAVE-------AQTGM 179 (296)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHHHHHhcCCC-------CchhH
Confidence 9999999999999999999999999999999875432222 256888999999999998886321 11122
Q ss_pred hHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHH
Q 022936 169 FSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPL 248 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~ 248 (290)
.....+....+.+... ...+.. . ......+...+...+..++.+...+.+.++++++.+|.+++.+.+++|+++
T Consensus 180 ~~~~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a 253 (296)
T PRK15430 180 LIETMWLLPVAAIYLF----AIADSS-T-SHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLM 253 (296)
T ss_pred HHHHHHHHHHHHHHHH----HHccCC-c-ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2222233222222211 111110 0 000111112233444455544444445568999999999999999999999
Q ss_pred HHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 249 SVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 249 ~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
+++|++++||++++.+++|+++++.|+.+...+
T Consensus 254 ~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 254 FLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888776543
No 15
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.92 E-value=6.4e-24 Score=177.19 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=220.4
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcC----ccccCcccHH-HHHHHHHHHHHHHHHHHHhhhhhcccchh
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLG----VISTEPLTWR-LIKVWLPVNVIFVGMLITSMFSLKYINVA 78 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 78 (290)
.+|+.-. +|++|.+++..|+++-.++.....+.. .+++.+.+|. .+++..|.++..+++..++|.|++|++++
T Consensus 34 ~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlS 111 (349)
T KOG1443|consen 34 YFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLS 111 (349)
T ss_pred Hhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeee
Confidence 4555444 689999999999988777665544321 1223456765 58889999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022936 79 MVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAK 158 (290)
Q Consensus 79 ~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~ 158 (290)
.|++.|++.++|+.+++.++.-||+++.-...+.++..|+.+.++.+.+++..|++++.+++++.+++..+.|+++++.+
T Consensus 112 lYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 112 LYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred eeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999998533
Q ss_pred hccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhh-----hc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022936 159 QVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-----SR-TPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT 232 (290)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (290)
..+-+|.++.++..-.....++|..+..|+.... ++ .+..........+...|..++...++.+..+.++
T Consensus 192 ----~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~T 267 (349)
T KOG1443|consen 192 ----SAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRT 267 (349)
T ss_pred ----cccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeec
Confidence 1345788888776666666666766665543211 11 1111111223456778888899999989999999
Q ss_pred CcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 233 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 233 ~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
+..+.++.+.+|.+.+.++|..+.+|+++..+|.|..+++.|+..+..
T Consensus 268 s~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 268 SSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred cceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999844
No 16
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=6.1e-22 Score=173.13 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=195.7
Q ss_pred hhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCc--cccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Q 022936 6 KFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGV--ISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVL 83 (290)
Q Consensus 6 K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i 83 (290)
.++-++ +.+.|..=++.-.+.-.++.......++ ++..+.-++++.+.+.++++-...+++.+.|++|++++.++++
T Consensus 33 ~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL 111 (334)
T PF06027_consen 33 SLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLL 111 (334)
T ss_pred HHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhh
Confidence 344443 6776777666665544433332222222 2222223456677788899999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc---------ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022936 84 KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIINCFLTASYSLTLRRVM 154 (290)
Q Consensus 84 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~ 154 (290)
.+++.+++++++++++|||+++.++.|+.++++|+.++...|. +....|+++++.++++||++++..|+..
T Consensus 112 ~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v 191 (334)
T PF06027_consen 112 DCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLV 191 (334)
T ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998876552 2246899999999999999999999987
Q ss_pred hhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 022936 155 DTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGA 234 (290)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 234 (290)
+ +.+..+......+++.++..+..... |.....+.+ +. ...+...+.-+++-+..+...-..++..||
T Consensus 192 ~---------~~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w~-~~~~~~~v~~~~~lf~~y~l~p~~l~~ssA 259 (334)
T PF06027_consen 192 K---------KAPRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-WT-SQVIGLLVGYALCLFLFYSLVPIVLRMSSA 259 (334)
T ss_pred c---------cCCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-CC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 6 34556666665666666666555443 444443332 22 222333333333333333333467999999
Q ss_pred chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 235 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 235 ~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
+...+-.....+.+++++++++|+++++..++|.+++++|.++|+..+.++
T Consensus 260 t~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 260 TFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred ceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 988887777899999999999999999999999999999999998754444
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.90 E-value=1.2e-21 Score=170.25 Aligned_cols=245 Identities=12% Similarity=0.124 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHcC--ccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHH
Q 022936 21 MVYQNFISVVTVTILSFLG--VISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYL 98 (290)
Q Consensus 21 ~~~r~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~ 98 (290)
..++...+.+.+.+....+ +.+.++.+++.+......+......+.+.++++++.|++....+.++.|+++.++++++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 4666655555544433222 22233334444544455556677899999999999999999999999999999999999
Q ss_pred hCccCChHHHHHHHHHHHhhhhheeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHH
Q 022936 99 FNKRHDNRVWAALFLMIISAISGGITDL-SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS 177 (290)
Q Consensus 99 ~~e~~~~~~~~~~~l~~~G~~l~~~~~~-~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (290)
+|||++++++.++.+++.|+.++..++. +.+..|+.+++.++++++.|.+..|+..++.+ ...+......+...
T Consensus 111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-----~~~~~~~~~~~~~~ 185 (281)
T TIGR03340 111 LGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-----AFYSALGYLGIGFL 185 (281)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccccchh-----cccccHHHHHHHHH
Confidence 9999999999999999999998765432 23457889999999999999998887633110 01111111222222
Q ss_pred hH-HHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHhhcCcchhhhhhhhhhHHHHHHhHhh
Q 022936 178 LS-LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT-SMWFLHQTGATTYSLVGSLNKIPLSVAGILL 255 (290)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~ 255 (290)
.. .|...+ ....++.. . . ..+.. +...++.+.+.....|. .++++++.++.+.+...+++|++++++|+++
T Consensus 186 ~~~~~~~~~-~~~~~~~~-~---~-~~~~~-~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~ 258 (281)
T TIGR03340 186 AMGWPFLLL-YLKRHGRS-M---F-PYARQ-ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF 258 (281)
T ss_pred HHHHHHHHH-HHHHhccc-h---h-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHH
Confidence 11 222211 11111110 0 0 01112 23344555555555554 4579999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhhhh
Q 022936 256 FKVPTSLENSASIFFGLLAGVF 277 (290)
Q Consensus 256 ~~e~~~~~~~~G~~lil~g~~l 277 (290)
+||+++..+++|.++++.|+.+
T Consensus 259 lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 259 LNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999865
No 18
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.4e-21 Score=155.27 Aligned_cols=257 Identities=14% Similarity=0.101 Sum_probs=211.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHH
Q 022936 13 NFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITA 92 (290)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ 92 (290)
.|.+...+.+.|+.+..+..-++...++ ..+.|+-.-+.....++-|.+.++.+|.|++++|.++..+-+++.|+-++
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~--~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVM 126 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRK--KTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVM 126 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecc--cccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCccee
Confidence 5788899999999999988766554443 23344444566677888899999999999999999999999999999999
Q ss_pred HHHHHHhCccCChHHHHHHHHHHHhhhhheeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Q 022936 93 VGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-------SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGN 165 (290)
Q Consensus 93 ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~ 165 (290)
+++..+.+++.+|++.+++++++.|+++..+.+. +..-.|.++.++|.-+.+.....+.|+.+.+ .
T Consensus 127 ilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y-------q 199 (337)
T KOG1580|consen 127 ILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY-------Q 199 (337)
T ss_pred eeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhh-------c
Confidence 9999999999999999999999999999866421 2224799999999999999998888875432 2
Q ss_pred CChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhh
Q 022936 166 LNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNK 245 (290)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~ 245 (290)
-+..+++++.|+-+...+-...++.||.-....+. ..+|..|.-+...++++...+...+..+...||.+-|++.+-++
T Consensus 200 ~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~-~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRK 278 (337)
T KOG1580|consen 200 RTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFV-QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRK 278 (337)
T ss_pred cCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHH-HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHH
Confidence 35678899999999888877777888753333222 22345566777888999888998899999999999999999999
Q ss_pred HHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 246 IPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 246 v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
.++++.++++|+++++.+||+|.++++.+...=.
T Consensus 279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 9999999999999999999999999999876644
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=1e-19 Score=156.19 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=156.5
Q ss_pred ehhhhhccCCChhHHHHHHHHHHHHHHHHHHH-HcCccc-----cCcccHHH-HHHHHHHHHHHHHHHHHhhhhhcccch
Q 022936 5 NKFVLSGYNFDAGISLMVYQNFISVVTVTILS-FLGVIS-----TEPLTWRL-IKVWLPVNVIFVGMLITSMFSLKYINV 77 (290)
Q Consensus 5 nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~-~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~ 77 (290)
.|+ .. +++ |..+.++|++++.+++.+.. ..++++ .++.++++ +......+++....+.++++|++++++
T Consensus 21 ~k~-~~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~ 96 (256)
T TIGR00688 21 SKL-LK--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSS 96 (256)
T ss_pred HHH-hc--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 465 33 588 99999999999887765433 222211 11122222 334556677788899999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022936 78 AMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTA 157 (290)
Q Consensus 78 ~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 157 (290)
+.++++.++.|+++++++++++|||++++++.++.+++.|+.++..++.+.+ .+++.+++++|.|.+..||..++
T Consensus 97 ~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~~~- 171 (256)
T TIGR00688 97 LEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALKNT- 171 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcCCC-
Confidence 9999999999999999999999999999999999999999998754322211 46788999999999998886321
Q ss_pred hhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 022936 158 KQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTY 237 (290)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (290)
+..+... .+....|...+.... +++... +.......|..+++.|+++...+...+.++|+.+|.+.
T Consensus 172 ---------~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~ 237 (256)
T TIGR00688 172 ---------DLAGFCL-ETLSLMPVAIYYLLQ-TDFATV---QQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLL 237 (256)
T ss_pred ---------CcchHHH-HHHHHHHHHHHHHHH-hccCcc---cccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 1122221 122233333322221 122111 10111123666677777754434445689999999999
Q ss_pred hhhhhhhhHHHHHHhHhh
Q 022936 238 SLVGSLNKIPLSVAGILL 255 (290)
Q Consensus 238 si~~~~~~v~~~i~~~~~ 255 (290)
+...+++|++++++|++.
T Consensus 238 s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 238 GLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999764
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=1e-18 Score=152.04 Aligned_cols=247 Identities=15% Similarity=0.188 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHH
Q 022936 17 GISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEM 96 (290)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~ 96 (290)
+......|...+.+........++.+.++..++.+...+...+.......+++.++++++++.++.+.++.|+++.++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 55666669988887743333222211122121222334444555778999999999999999999999999999999997
Q ss_pred -HHhCccCChHHHHHHHHHHHhhhhheecccccc---hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHH
Q 022936 97 -YLFNKRHDNRVWAALFLMIISAISGGITDLSFH---AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV 172 (290)
Q Consensus 97 -~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 172 (290)
+++|||++++++.++.+.+.|+.++..++...+ ..|+.+++.+++++|.+.+..|+..+ .++....
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~~----------~~~~~~~ 185 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSR----------LGPVTLA 185 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHH
Confidence 667999999999999999999999987665433 58999999999999999999998741 2333434
Q ss_pred H-HHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHhhcCcchhhhhhhhhhHHHHH
Q 022936 173 L-LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT-SMWFLHQTGATTYSLVGSLNKIPLSV 250 (290)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~si~~~~~~v~~~i 250 (290)
. +... ... .........+.. . ......|....+.|+++....+. .++++++.++...+.....+|+.+.+
T Consensus 186 ~~~~~~-~~~-~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 257 (292)
T COG0697 186 LLLQLL-LAL-LLLLLFFLSGFG----A--PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAAL 257 (292)
T ss_pred HHHHHH-HHH-HHHHHHHhcccc----c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 3 3222 111 111111111111 1 11223356677777777765444 45799999999999999999999999
Q ss_pred HhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 251 AGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 251 ~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
+++.++||+++..+++|+++++.|+.+.+..
T Consensus 258 ~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 258 LGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998766
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.1e-19 Score=152.02 Aligned_cols=266 Identities=11% Similarity=0.059 Sum_probs=217.5
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHH
Q 022936 10 SGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNV 89 (290)
Q Consensus 10 ~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi 89 (290)
++.+|..|.++.+.|-+.+.++.+......+.+ .-.++-+.+....++.....-.++.-|++|++-++..+.|++..+
T Consensus 44 ~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmI 121 (327)
T KOG1581|consen 44 DGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMI 121 (327)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhh
Confidence 345788899999999999998887665444333 223345777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc---------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 90 ITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 90 ~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
.++++..++.|+|.++++.....++..|+.+....+. +++..|+.+...+.+.+++-+..++++.+
T Consensus 122 PVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~----- 196 (327)
T KOG1581|consen 122 PVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK----- 196 (327)
T ss_pred HHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc-----
Confidence 9999999999999999999999999999998754321 24578999999999999999999999876
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLV 240 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~ 240 (290)
+.+.++++++++.|++.++......+..+.+.+.-++-. .+|.++.-+.....++.+.+...+.-+++.||.+.+.+
T Consensus 197 --~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I 273 (327)
T KOG1581|consen 197 --KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTI 273 (327)
T ss_pred --cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHH
Confidence 346899999999999999888766544444433322221 13455566666677777778777889999999999999
Q ss_pred hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 241 GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 241 ~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
...|.+++++++.++||++++..||.|+.+++.|..+-...|+|+
T Consensus 274 ~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 274 MTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988888766554443
No 22
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.1e-19 Score=144.39 Aligned_cols=267 Identities=16% Similarity=0.087 Sum_probs=212.0
Q ss_pred hhhhhccCCC-hhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Q 022936 6 KFVLSGYNFD-AGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK 84 (290)
Q Consensus 6 K~~~~~~~~~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~ 84 (290)
.+++++.+|. +.+.++..|+++=..+..+-...-..+.+. .-+|....++.+..+.+.++|-|+.|.|.++..+.|
T Consensus 63 Elif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~---iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFK 139 (367)
T KOG1582|consen 63 ELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRV---IPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFK 139 (367)
T ss_pred HHHhccccCcccchHHHHHHHHHHHhhhheEEEeeccccee---cchhHhhhhHhhhhhccccCcCccccccCcHHHHHH
Confidence 4566666775 778999999876544332211110111111 236777888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc----ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022936 85 NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQV 160 (290)
Q Consensus 85 ~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 160 (290)
++..+-+++.+.++-++|..+.+..+..+..+|.++....|. .+|..|+.+.-.+.+++|+-...++|.++.++
T Consensus 140 ccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-- 217 (367)
T KOG1582|consen 140 CCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-- 217 (367)
T ss_pred hhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC--
Confidence 999999999999999999999999999999999999988775 35678999999999999999999999987533
Q ss_pred cccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhh
Q 022936 161 TKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLV 240 (290)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~ 240 (290)
.+..|+++|....+.+.++.....+||....|..-...+.....+..+-...+++........++..++.+++.+
T Consensus 218 -----~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatv 292 (367)
T KOG1582|consen 218 -----ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATV 292 (367)
T ss_pred -----CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHH
Confidence 356889999999999998888888888766655432222222334444445555555555567999999999999
Q ss_pred hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 241 GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 241 ~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
++.++.+++++++++|..++|.+..-|..++..|+++-.+.|
T Consensus 293 TTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 293 TTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999977665
No 23
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.80 E-value=4.3e-17 Score=133.14 Aligned_cols=253 Identities=16% Similarity=0.084 Sum_probs=195.2
Q ss_pred hhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHh
Q 022936 6 KFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKN 85 (290)
Q Consensus 6 K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~ 85 (290)
|-++. .+. |--.+.+|..++.+++..+.+.. ++++++++++.....|.....+|.+++.|++.+|.+.+..+.+
T Consensus 32 k~LFP--~vG-~~g~t~lRl~~aaLIll~l~RPw---r~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF 105 (292)
T COG5006 32 KSLFP--LVG-AAGVTALRLAIAALILLALFRPW---RRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEF 105 (292)
T ss_pred HHHcc--ccC-hhhHHHHHHHHHHHHHHHHhhHH---HhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence 44454 556 88899999999988776654322 2577889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc---cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 022936 86 VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTK 162 (290)
Q Consensus 86 ~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~ 162 (290)
+-|+.+.+++ .||..-..|.+ +.+.|..+..-.. .+.|..|..+++.+..|++.|.+.-||.=+
T Consensus 106 ~GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~------- 172 (292)
T COG5006 106 TGPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR------- 172 (292)
T ss_pred ccHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc-------
Confidence 9999887755 34444444555 5667877764322 245789999999999999999999998732
Q ss_pred cCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhhhhh
Q 022936 163 SGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVG 241 (290)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~si~~ 241 (290)
..+.-.-+...+..+..+.+|+.....+ +...++.....-+..++++..+-|+. .-++++.++-+.++..
T Consensus 173 --~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~Ll 243 (292)
T COG5006 173 --AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLL 243 (292)
T ss_pred --cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHH
Confidence 1233344556667777777776653322 22233455566678889998888865 6689999999999999
Q ss_pred hhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 242 SLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 242 ~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
.+||..+.+.|+.++||++|+.||+|++.++.++.=.+...+|+.
T Consensus 244 SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 244 SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999999999999999999999999998876666554443
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.79 E-value=6.9e-17 Score=140.81 Aligned_cols=232 Identities=14% Similarity=0.149 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHH-cCccccCccc-HHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHh-hHHHHHHHHHHHHhC
Q 022936 24 QNFISVVTVTILSF-LGVISTEPLT-WRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKN-VTNVITAVGEMYLFN 100 (290)
Q Consensus 24 r~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ll~~~~~~ 100 (290)
|..++.+++..... .+. ++.+ ++.+..-+..++.+...+.++..|.++++++.+..+.+ +.|++..+++.+++|
T Consensus 33 ~~~~g~l~~~~~~~~~~~---~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~ 109 (290)
T TIGR00776 33 GTTFGALILSIAIAIFVL---PEFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG 109 (290)
T ss_pred HHHHHHHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 66666655443322 221 1122 33344445566668889999999999999999988888 888899999999999
Q ss_pred ccCChHH----HHHHHHHHHhhhhheecccc-------cc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCh
Q 022936 101 KRHDNRV----WAALFLMIISAISGGITDLS-------FH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE 168 (290)
Q Consensus 101 e~~~~~~----~~~~~l~~~G~~l~~~~~~~-------~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 168 (290)
||+++++ +.++++.+.|+.+....+.+ .+ ..|.++++.|+++|+.|.+..|+. +.++
T Consensus 110 e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-----------~~~~ 178 (290)
T TIGR00776 110 EWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-----------GVDG 178 (290)
T ss_pred hccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHc-----------CCCc
Confidence 9999999 99999999999988654221 33 589999999999999999999875 2456
Q ss_pred hHHHHHHHH----hHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHh-hcCcchhhhhhh
Q 022936 169 FSMVLLNNS----LSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLH-QTGATTYSLVGS 242 (290)
Q Consensus 169 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~~si~~~ 242 (290)
.+..+.+.. .+.....+. . +. +...+...|.. +..|++. ...+..+ .+.+ +.++.+.++...
T Consensus 179 ~~~~~~~~~g~~~~~~~~~~~~---~-~~------~~~~~~~~~~~-~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~ 246 (290)
T TIGR00776 179 LSVLLPQAIGMVIGGIIFNLGH---I-LA------KPLKKYAILLN-ILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQ 246 (290)
T ss_pred ceehhHHHHHHHHHHHHHHHHH---h-cc------cchHHHHHHHH-HHHHHHH-HHHHHHHHHHcccccchhhHHHHHH
Confidence 665444433 222222221 0 00 11112223333 3377774 5655554 6888 999999999999
Q ss_pred hhhHHHHHHhHhhccCCCCchhH----HHHHHHHhhhhhhhee
Q 022936 243 LNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA 281 (290)
Q Consensus 243 ~~~v~~~i~~~~~~~e~~~~~~~----~G~~lil~g~~l~~~~ 281 (290)
++|+.+++.++++++|+.++.|+ +|.++++.|+.+....
T Consensus 247 ~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 247 LGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999 9999999999887654
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.79 E-value=3e-17 Score=138.84 Aligned_cols=212 Identities=16% Similarity=0.249 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc
Q 022936 47 TWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL 126 (290)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~ 126 (290)
++++..++.+.+++|+.++.+.+.++++++++++++++++..++|++++++++|||.++++|.++.+.+.|+.+...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999854211
Q ss_pred -----------------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHH
Q 022936 127 -----------------SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV 189 (290)
Q Consensus 127 -----------------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (290)
.....|++..+.++++.++..++.+|.+|+ .+.+.+.....-...+.+..++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~-------~~~s~~~~N~qL~~~gi~~~~~~~~~ 165 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKR-------SNVSLWIQNMQLYLFGILFNLLALLL 165 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 112579999999999999999999999974 23455554444455666665554333
Q ss_pred hcchhhhhcCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHH
Q 022936 190 FNEVDYLSRTPL--LRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSAS 267 (290)
Q Consensus 190 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G 267 (290)
.|+....+.+. ..++..|..+...++.|...++ .+|+.+...-.....+..+.+.++++.+||.++|....+|
T Consensus 166 -~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg 240 (244)
T PF04142_consen 166 -SDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLG 240 (244)
T ss_pred -ccccccccCCchhhcchHHHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhh
Confidence 33332222111 2234456677777777777776 8999999999999999999999999999999999999998
Q ss_pred HHH
Q 022936 268 IFF 270 (290)
Q Consensus 268 ~~l 270 (290)
..+
T Consensus 241 ~~~ 243 (244)
T PF04142_consen 241 AAL 243 (244)
T ss_pred eec
Confidence 765
No 26
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=144.07 Aligned_cols=253 Identities=17% Similarity=0.219 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcc-cchhHHHHHHhhHHHHHHHH
Q 022936 17 GISLMVYQNFISVVTVTIL-SFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKY-INVAMVTVLKNVTNVITAVG 94 (290)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~ll 94 (290)
-..+++.|++...+-..+. ..+...+ ++++ +|.....-.++...+.++|+++++ ++.+...+.|+-.++.++++
T Consensus 33 gNLITFaqFlFia~eGlif~skf~~~k-~kip---lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTSKFFTVK-PKIP---LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eeehHHHHHHHHHHhceeeeccccccC-CCCc---hhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 4577888887655543332 1222222 3444 344455567788899999999998 89999999999999999999
Q ss_pred HHHHhCccCChHHHHHHHHHHHhhhhheec---ccc--------------c-c-hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022936 95 EMYLFNKRHDNRVWAALFLMIISAISGGIT---DLS--------------F-H-AVGYAWQIINCFLTASYSLTLRRVMD 155 (290)
Q Consensus 95 ~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~---~~~--------------~-~-~~G~~~~l~s~~~~a~~~v~~~~~~~ 155 (290)
++++.|+|.+.+++.+++++.+|+++.+.. |.. + . ..|+.+...+.+..|.-.+++++..+
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ 188 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988542 110 1 1 36889899999999999999999887
Q ss_pred hhhhccccCCCChhHHHHHHHHhHHHHHHHHHH-HhcchhhhhcCC-----C--CcchhHHHHHHHHHHHHHHHHHHHHH
Q 022936 156 TAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI-VFNEVDYLSRTP-----L--LRLPSFWLVMTLSGFLGLAISFTSMW 227 (290)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (290)
+++ =++-|.+||+...++|..+...- +..+|...+..+ . ..-|..|.+++..+...+.--=..+.
T Consensus 189 kyG-------Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~ 261 (330)
T KOG1583|consen 189 KYG-------KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYI 261 (330)
T ss_pred Hhc-------CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 543 26789999999999887765321 112232222221 1 11356677777766665443333445
Q ss_pred HHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 228 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 228 ~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
.-..+++.+.+++-++++-++.++++..|++++|+++|+|..+++.|.++|+.
T Consensus 262 L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 262 LTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred hhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999974
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=142.50 Aligned_cols=224 Identities=17% Similarity=0.105 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc----
Q 022936 51 IKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---- 126 (290)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~---- 126 (290)
.+.-+..+.+....++.+|.|+++++++..+++.++.-.||..++.++.+||+++.|.+++++.+.|+++++.+|.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3444566677789999999999999999999999999999999999999999999999999999999999987743
Q ss_pred ----ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHH----HHHHHhcchhhhhc
Q 022936 127 ----SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV----LLVIVFNEVDYLSR 198 (290)
Q Consensus 127 ----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 198 (290)
+....|.++++++++.||.|.+..||..+++ +.+++.-...-|.-++...++. ++-..-+|. .+
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e-----g~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~---F~ 310 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE-----GERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER---FE 310 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc-----cccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc---cc
Confidence 2336899999999999999999999986531 1345533333333333333333 332221121 12
Q ss_pred CCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhh
Q 022936 199 TPLLRLPSFWLVMTLSGFLG-LAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF 277 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l 277 (290)
.| ....+ ..++..+..+ ++--|...+++-.++|+..++...+..+++++...++=+.++++..++|...+++|.+.
T Consensus 311 lP--~~~q~-~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~ 387 (416)
T KOG2765|consen 311 LP--SSTQF-SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVI 387 (416)
T ss_pred CC--CCcee-EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhh
Confidence 22 22232 2334444444 45567666899999999999999999999999999888999999999999999999999
Q ss_pred hheeeccc
Q 022936 278 FARAKMWE 285 (290)
Q Consensus 278 ~~~~~~~~ 285 (290)
.++..+.+
T Consensus 388 vn~~~~~~ 395 (416)
T KOG2765|consen 388 VNISSENS 395 (416)
T ss_pred eecccccc
Confidence 88754433
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.77 E-value=1.5e-17 Score=131.51 Aligned_cols=147 Identities=18% Similarity=0.396 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCC-----CCc-ch
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTP-----LLR-LP 205 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 205 (290)
|+++++.|.++.|+++++.|+.+++.. .++++.+++++++|++..+.+.+.|.....|+........ ... ++
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 78 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDP 78 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchH
Confidence 789999999999999999999987421 1235789999999999999999999988877654222111 111 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 206 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
..+..++.+|++++..+++.++.++++||.++++.+++|.+..++.|+++|||++|..+++|+++.+.|+.+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 667788999999999999999999999999999999999999999999999999999999999999999999975
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.76 E-value=8e-16 Score=132.40 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc--
Q 022936 48 WRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-- 125 (290)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~-- 125 (290)
+++..+....+++|..+|.+...++++.+++++++..++....|+++..++++||.++++|.++++...|+.+.-.++
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 445667788899999999899999999999999999999999999999999999999999999999999999985211
Q ss_pred ---------cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhh
Q 022936 126 ---------LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL 196 (290)
Q Consensus 126 ---------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (290)
.+..+.|....+.++...++..++.+|++|+ .+.+.|-...--..++.++.+...... |+...
T Consensus 169 ~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~-------s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i 240 (345)
T KOG2234|consen 169 PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKG-------SNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAI 240 (345)
T ss_pred CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHHHHhhc-ccccc
Confidence 1234789999999999999999999999973 344555444333445555555444333 33222
Q ss_pred hcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhh
Q 022936 197 SRTP--LLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLA 274 (290)
Q Consensus 197 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g 274 (290)
...+ ..++...|..++..++.|...+. .+|+.+...-.....+..+++.+.++.+||-++|..-.+|+.+++.+
T Consensus 241 ~~~gff~G~s~~vw~vVl~~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~S 316 (345)
T KOG2234|consen 241 NEYGFFYGYSSIVWLVVLLNAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILS 316 (345)
T ss_pred ccCCccccccHHHHHHHHHHhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Confidence 1111 12345668888888888887776 78888888888888888999999999999999999999999999999
Q ss_pred hhhhheeeccc
Q 022936 275 GVFFARAKMWE 285 (290)
Q Consensus 275 ~~l~~~~~~~~ 285 (290)
+.+|+..+.++
T Consensus 317 i~lY~~~P~~~ 327 (345)
T KOG2234|consen 317 IFLYSLYPARD 327 (345)
T ss_pred HHHhhcCCccc
Confidence 99999766654
No 30
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.76 E-value=8.5e-16 Score=128.77 Aligned_cols=257 Identities=12% Similarity=0.160 Sum_probs=191.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH-cCcc-ccCcc--cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHH
Q 022936 13 NFDAGISLMVYQNFISVVTVTILSF-LGVI-STEPL--TWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTN 88 (290)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~-~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p 88 (290)
+.| +..+...|.+.+...+..+.. .|+. +..+. +++.+......+++...+...+.+|...-.+-.++.=.+.+|
T Consensus 31 ~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InP 109 (293)
T COG2962 31 PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINP 109 (293)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHH
Confidence 677 899999999999877665543 2221 11121 123344445556667889999999999877778888889999
Q ss_pred HHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCh
Q 022936 89 VITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE 168 (290)
Q Consensus 89 i~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 168 (290)
++.++++.+++|||.++.++.++.+..+|+..-.....+.++....+ ++++++|...-|++ +.+.
T Consensus 110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~RK~~-----------~v~a 174 (293)
T COG2962 110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLRKKL-----------KVDA 174 (293)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHHHhc-----------CCch
Confidence 99999999999999999999999999999999887777888776555 46788888764444 3455
Q ss_pred hHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHH
Q 022936 169 FSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPL 248 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~ 248 (290)
.+-...-+..-.|..+.+....++..... ...++..+..++..|..+-+--.....+.|+.+=.+.++..+++|...
T Consensus 175 ~~g~~lE~l~l~p~al~yl~~l~~~~~~~---~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~ 251 (293)
T COG2962 175 LTGLTLETLLLLPVALIYLLFLADSGQFL---QQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLM 251 (293)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHhcCchhh---hcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 55555566666777766665554433211 111234466777777776433223336899999999999999999999
Q ss_pred HHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccccC
Q 022936 249 SVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 288 (290)
Q Consensus 249 ~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~~~ 288 (290)
.+++++++||+++..++..-+.+-.|..+|.++..+++|+
T Consensus 252 fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 252 FLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999876655444
No 31
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.70 E-value=3.5e-18 Score=140.42 Aligned_cols=249 Identities=12% Similarity=0.066 Sum_probs=182.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHH-HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHH
Q 022936 14 FDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLI-KVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITA 92 (290)
Q Consensus 14 ~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ 92 (290)
++ |....-.|++.-.+..+++....+... +-.+.. +.+++-++......+..+||++|.+.+.+.++..++|++|.
T Consensus 62 ~~-p~e~a~~r~l~~mlit~pcliy~~~~v--~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ 138 (346)
T KOG4510|consen 62 ND-PMELASFRLLVRMLITYPCLIYYMQPV--IGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTI 138 (346)
T ss_pred cC-hhHhhhhhhhhehhhhheEEEEEeeee--ecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHH
Confidence 45 777777776665555555432221111 111111 22345577777788889999999999999999999999999
Q ss_pred HHHHHHhCccCChHHHHHHHHHHHhhhhheec-----c------c---ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022936 93 VGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----D------L---SFHAVGYAWQIINCFLTASYSLTLRRVMDTAK 158 (290)
Q Consensus 93 ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~-----~------~---~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~ 158 (290)
+++|.++||++++.+.++..+.+.|++++..+ | . +.+..|-+.++.+++..|--.+..|++=+
T Consensus 139 ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk--- 215 (346)
T KOG4510|consen 139 IFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK--- 215 (346)
T ss_pred HHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhc---
Confidence 99999999999999999999999999998542 1 1 23457888888888888877787888732
Q ss_pred hccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 022936 159 QVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPL-LRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTY 237 (290)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (290)
+.+..-.+-|-...++...++.....+++. .|+ +.+ |..++..|+.++..+.....++++-.|...
T Consensus 216 ------~~h~~msvsyf~~i~lV~s~I~~~~ig~~~----lP~cgkd---r~l~~~lGvfgfigQIllTm~lQiErAGpv 282 (346)
T KOG4510|consen 216 ------NAHAIMSVSYFSLITLVVSLIGCASIGAVQ----LPHCGKD---RWLFVNLGVFGFIGQILLTMGLQIERAGPV 282 (346)
T ss_pred ------cccEEEEehHHHHHHHHHHHHHHhhcccee----cCccccc---eEEEEEehhhhhHHHHHHHHHhhhhccCCe
Confidence 334333333444555555555444445432 232 112 445677899999999988889999999999
Q ss_pred hhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 238 SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 238 si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
++..+...+++.++-+++|||.+|+++|.|.++++.+.++....
T Consensus 283 aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 283 AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 99999999999999999999999999999999998877765543
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.51 E-value=1.4e-12 Score=108.31 Aligned_cols=219 Identities=16% Similarity=0.179 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc-----
Q 022936 52 KVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----- 126 (290)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~----- 126 (290)
+.+++.+++=.....+.+.++.+++++.+|++|....+||.+++.-+++++++.++|+++....+|+..++..|.
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 446778888777788888999999999999999999999999999999999999999999999999999876543
Q ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHH-----hc-----
Q 022936 127 -----SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV-----FN----- 191 (290)
Q Consensus 127 -----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----- 191 (290)
+.-..|+.+.+++-+..|.+.++-+|.++. .+.+|.+.+-|.-+++...+..+... .+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~-------~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~ 239 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK-------SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSC 239 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh-------ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcC
Confidence 122579999999999999999999998763 35788887777766664433222221 11
Q ss_pred -------chhhhhcCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCc
Q 022936 192 -------EVDYLSRTPLLRLPSFWLVMTLSGFLGLA--ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSL 262 (290)
Q Consensus 192 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~ 262 (290)
||.+.+..- ...|. ..+...|....+ .|+.....-|..|+++-.+...++..+.-+++.....|.+..
T Consensus 240 ~~~g~~eD~~~~~~~~-~e~p~--l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~l 316 (372)
T KOG3912|consen 240 NPRGVLEDWGDAFAAL-QESPS--LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHL 316 (372)
T ss_pred CCCcchhhHHHHHHHh-cCCch--hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHH
Confidence 111111100 00111 122223332221 233434456778999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhhhe
Q 022936 263 ENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 263 ~~~~G~~lil~g~~l~~~ 280 (290)
.|+.|.++.+.|+++|+-
T Consensus 317 lqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 317 LQILGFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999973
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.42 E-value=2.3e-12 Score=108.17 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=130.3
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc---------------------------c
Q 022936 75 INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------------------------S 127 (290)
Q Consensus 75 ~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~---------------------------~ 127 (290)
+++|.....++..|+++++.++...+||.+..++.+.++...|+......|. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5788889999999999999999999999999999999999999875322111 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcc----hhhhhcCC--C
Q 022936 128 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNE----VDYLSRTP--L 201 (290)
Q Consensus 128 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~ 201 (290)
..+.|....+.+..+.++-.++.++..++ ++. .+|.+....++..+.....++ .......+ .
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKD-------GDT-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI 149 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccC-------CCC-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc
Confidence 23456666777778888888888887542 122 244444444433332211111 11111111 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhh
Q 022936 202 LRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 278 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~ 278 (290)
..+...|...+..++.+.+ ..+.+|+.++++.++....+++++.++++++|||+++..+++|+.+++.|+.+|
T Consensus 150 ~~~~~~~~~~~~~a~~~~~----v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 150 GYPTAVWIVGLLNVGGGLC----IGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred CCchHHHHHHHHHHhcCce----eeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 1223334444444443333 445899999999999999999999999999999999999999999999998775
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=102.89 Aligned_cols=221 Identities=14% Similarity=0.140 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccc--c
Q 022936 51 IKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS--F 128 (290)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~--~ 128 (290)
.++..|.+++..+.++.+..+++.++++.++.+..+.-.|+.+++++++|+|+...++.+.++.+.|+++..+.|-. .
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999877643 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCh----hH-HHHHHH-HhHHHHHHHHHHHhcchhhhhcCCCC
Q 022936 129 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE----FS-MVLLNN-SLSLPLGVLLVIVFNEVDYLSRTPLL 202 (290)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
++.|+..++.|+...|+|.+..|+...+. +++. .+ +-|++- ....|.......-.+.|+.....|
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~P-- 203 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAP-- 203 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCC--
Confidence 68999999999999999999999987532 1211 11 122221 122222222111122333222222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 203 RLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
|..+.-.+.+....++..+.++..+.|...|+-..........+..++-+-..+-....|..+++.|.++.-...
T Consensus 204 -----WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 204 -----WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred -----chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 555555555556667777789999999999998888878888887776666788999999999999988876554
Q ss_pred ccc
Q 022936 283 MWE 285 (290)
Q Consensus 283 ~~~ 285 (290)
.|+
T Consensus 279 d~~ 281 (290)
T KOG4314|consen 279 DKD 281 (290)
T ss_pred chh
Confidence 444
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.32 E-value=1.4e-11 Score=93.45 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=96.9
Q ss_pred eeehhhhhccCCChhHHHHHHHHHHHHHHHHHHH-HcCccccCcccHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHH
Q 022936 3 LVNKFVLSGYNFDAGISLMVYQNFISVVTVTILS-FLGVISTEPLTWRLIKVWLPVNVI-FVGMLITSMFSLKYINVAMV 80 (290)
Q Consensus 3 ~~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~ 80 (290)
+.+|...+ ++| |....++|+..+.+ +..+. ..++.+.++.+++++......+.+ ......+.++++++++++..
T Consensus 8 ~~~k~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 83 (126)
T PF00892_consen 8 VFSKKLLK--KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV 83 (126)
T ss_pred HHHHHHhc--cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence 35677777 588 99999999999987 44333 233333456677777777777777 58899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhe
Q 022936 81 TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 122 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~ 122 (290)
+++.++.|+++.+++++++||+++++++.++++++.|+.++.
T Consensus 84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998763
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.22 E-value=2.4e-10 Score=84.23 Aligned_cols=135 Identities=12% Similarity=0.166 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
-.+|++++++++++-.++.|--++ +.||..-++.-+.....++....+..|.+....+. ++..|..+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~---------~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~----~~k~~lfl 70 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE---------GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI----GPKSWLFL 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------ccCccHHHHHHHHHHHHHHHHHHHhcCceeccccc----Ccceehhh
Confidence 367899999999999999887665 34555545555666666666666677766533222 23347788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
+.+|+.+-.-.+..|++++.-.+....-..-..+++++++++.+++|++|..+++|++++..|.++.+
T Consensus 71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 88998776666666789999999999999999999999999999999999999999999999988764
No 37
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.16 E-value=9.4e-12 Score=102.20 Aligned_cols=256 Identities=10% Similarity=0.053 Sum_probs=176.3
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVL 83 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i 83 (290)
.+.++-++ +.+-|..=++.....-.++-.+...+|+ +.-+-.|++.+++++.=.-.+++-..|.||++....+.+
T Consensus 36 tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lL 110 (336)
T KOG2766|consen 36 TSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR----KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLL 110 (336)
T ss_pred hhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh----HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHH
Confidence 34454442 4555666555555444444333333443 111224566777777767778888899999999999999
Q ss_pred HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheeccc--------ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022936 84 KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIINCFLTASYSLTLRRVMD 155 (290)
Q Consensus 84 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~ 155 (290)
-+-..+.+.+++|+++|.|..+.++.++++++.|+..+...|. +....|+++.++++-+||+.++.-+.+.+
T Consensus 111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk 190 (336)
T KOG2766|consen 111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK 190 (336)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHh
Confidence 9988889999999999999999999999999999998876553 33468999999999999999998888766
Q ss_pred hhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcCc
Q 022936 156 TAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGA 234 (290)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 234 (290)
+.+..+.+-...++++++..+-.. . |..+.... +++...... +...++..+-|... -.+|.+|+
T Consensus 191 ---------n~d~~elm~~lgLfGaIIsaIQ~i-~-~~~~~~tl--~w~~~i~~y--l~f~L~MFllYsl~pil~k~~~a 255 (336)
T KOG2766|consen 191 ---------NADRVELMGFLGLFGAIISAIQFI-F-ERHHVSTL--HWDSAIFLY--LRFALTMFLLYSLAPILIKTNSA 255 (336)
T ss_pred ---------cCcHHHHHHHHHHHHHHHHHHHHh-h-hccceeeE--eehHHHHHH--HHHHHHHHHHHHhhHHheecCCc
Confidence 567777777767777777665532 2 22111111 111111111 11333333344433 46888888
Q ss_pred chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 235 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 235 ~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
+...+--.-...-+.++ -.||-+.+|.-.+..+.+..|.++|+.+
T Consensus 256 T~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 256 TMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred eEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 87776555556666666 5678889999999999999999999653
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.16 E-value=3.1e-10 Score=84.88 Aligned_cols=105 Identities=19% Similarity=0.339 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHcC-cc-c-cCcccHHHHHHHHHHHHHHH-HHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHH
Q 022936 22 VYQNFISVVTVTILSFLG-VI-S-TEPLTWRLIKVWLPVNVIFV-GMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMY 97 (290)
Q Consensus 22 ~~r~~~~~~~l~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~ 97 (290)
.+|...+.+++......+ +. + .+..+++.+......+.+.. .++.++.+|+++.+ +....+.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 467777776665543322 11 1 12233344555556576654 88999999999999 58889999999999999999
Q ss_pred HhCccCChHHHHHHHHHHHhhhhheecccc
Q 022936 98 LFNKRHDNRVWAALFLMIISAISGGITDLS 127 (290)
Q Consensus 98 ~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~ 127 (290)
++|||++++++.++.++..|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999887654
No 39
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.13 E-value=4.5e-10 Score=85.07 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHH
Q 022936 141 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 220 (290)
Q Consensus 141 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (290)
+++|.+.++.|+..+ +.++....++....+.+ ..+.....+..+ .+.. +...+....+.++++..
T Consensus 1 ~~~a~~~~~~k~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~ 65 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK---------KISPLSITFWRFLIAGI-LLILLLILGRKP----FKNL-SPRQWLWLLFLGLLGTA 65 (126)
T ss_pred ceeeeHHHHHHHHhc---------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCC-ChhhhhhhhHhhcccee
Confidence 357788899999876 47888989998888887 555554443322 1111 12224445556666544
Q ss_pred H-HHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 221 I-SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 221 ~-~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
. +...+++.++.++...+.....+|+.+.++++++++|++++.+++|+++++.|+.+..
T Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 66 LAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 4445679999999999999999999999999999999999999999999999988754
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.04 E-value=1.1e-07 Score=80.59 Aligned_cols=214 Identities=15% Similarity=0.131 Sum_probs=154.1
Q ss_pred CcccH--HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHHHHHHHhCccCChHHH----HHHHHHHH
Q 022936 44 EPLTW--RLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVW----AALFLMII 116 (290)
Q Consensus 44 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ll~~~~~~e~~~~~~~----~~~~l~~~ 116 (290)
++++. +.+..-+..++++...+...+.|.+++.+|.+.-+. ...-+.+.+++.++++|-.+..++ .++++++.
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 45543 566666788899999999999999999887765544 667777899999999997665554 47889999
Q ss_pred hhhhheeccccc--------chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHH
Q 022936 117 SAISGGITDLSF--------HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI 188 (290)
Q Consensus 117 G~~l~~~~~~~~--------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (290)
|+.+.+..|.+. ...|....+.+.+.|..|.+..|.. +.++++..+=+++........+..
T Consensus 116 Gv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----------~~~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 116 GVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----------HVSGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred HHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----------CCChhHhHHHHHHHHHHHHHHHhh
Confidence 999987754321 2469999999999999999987764 457777666655544443333333
Q ss_pred HhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchh----
Q 022936 189 VFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLEN---- 264 (290)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~---- 264 (290)
..++ ... +...|. -+..|++--..|...+.+.++.+..+.=.++.+..+++.+.|+++++|+-+.++
T Consensus 185 ~~~~--~~~------~k~~~~-nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~ 255 (269)
T PF06800_consen 185 FSKK--PFF------EKKSWK-NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYT 255 (269)
T ss_pred cccc--ccc------ccchHH-hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHH
Confidence 2211 111 111122 244566655666666678889999999999999999999999999999988664
Q ss_pred HHHHHHHHhhhhh
Q 022936 265 SASIFFGLLAGVF 277 (290)
Q Consensus 265 ~~G~~lil~g~~l 277 (290)
.+|+++++.|.++
T Consensus 256 ~~G~~Liv~G~il 268 (269)
T PF06800_consen 256 LIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHhhhc
Confidence 4577777777654
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.99 E-value=2.2e-09 Score=79.20 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=97.9
Q ss_pred ehhhhhccCCChhHHHHHHHHHHHHHHHHHHH-HcCcccc-CcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Q 022936 5 NKFVLSGYNFDAGISLMVYQNFISVVTVTILS-FLGVIST-EPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTV 82 (290)
Q Consensus 5 nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 82 (290)
.|.-++ +.+ |.+-+..|..+..+.+.... ..|+.+. ..++.|.+..+...|+.......++++|++.-++|...-
T Consensus 22 ~KIGl~--~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvP 98 (140)
T COG2510 22 AKIGLE--GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVP 98 (140)
T ss_pred HHHhcc--ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 466666 788 99999999998887766543 4454443 346778888877888888899999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhe
Q 022936 83 LKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 122 (290)
Q Consensus 83 i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~ 122 (290)
+..+.|+++.+++++++|||++..+|+++.++.+|+.+++
T Consensus 99 ldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 99 LDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred cccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999998865
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.89 E-value=4.4e-08 Score=85.19 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 022936 133 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 212 (290)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
+++.+.+++++|.+.+..||..++ .++ .+++.+....+...|+....... ..++.+ +...|....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~---------~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~ 67 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK---------EPD--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLA 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc---------hhH--HHHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHH
Confidence 567899999999999999987542 122 24555555555555554432111 111111 112244455
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 213 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
..+.......+..+++.++.++...+.+....|+.+.++++++++|+++..+++|+++++.|+.+...
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56666666666667899999999999999999999999999999999999999999999999987654
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.87 E-value=1e-07 Score=83.56 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=103.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcch
Q 022936 126 LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLP 205 (290)
Q Consensus 126 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
.+....|.++.++++++++...++.|.. + +.++.+..++....+.+.+.+.....++.....+. ..+.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~---------~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~ 70 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y---------YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTP 70 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c---------CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCH
Confidence 3344589999999999999999999764 3 47899999999988887666655443332211100 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 206 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
..+......+.+........+++++++++...++.....|+...++++++++|+++..+++|+++.++|+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 71 QKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22222233333333334455689999999999999999999999999999999999999999999999998754
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.83 E-value=1.5e-07 Score=80.77 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhh-hcCCCCcchhHHH
Q 022936 131 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWL 209 (290)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 209 (290)
.|..+.+.++++++...+..|.. . +.++.+..++-...+.+.+.+.....++.... .+.+.......+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~---------~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K---------PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLIL 71 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c---------cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHH
Confidence 48899999999999999998873 3 47899999999888887766554433332111 0111111111133
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 210 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
.....|++........+.+++++++.++++.....|+.+++++.++++|+++.++++|+++.+.|+.+..
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4455565544445555679999999999999999999999999999999999999999999999987653
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.72 E-value=2.5e-07 Score=79.33 Aligned_cols=113 Identities=6% Similarity=-0.008 Sum_probs=85.6
Q ss_pred eehhhhhccCCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHHHH
Q 022936 4 VNKFVLSGYNFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVI-FVGMLITSMFSLKYINVAMVTV 82 (290)
Q Consensus 4 ~nK~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~ 82 (290)
..|...++.+.+ +.....+|+.++.+++.+....... .++.+++++...+..+++ ......++++++++.+++.+++
T Consensus 146 ~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 146 LYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGP-NPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred HHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 456655532222 4455557888888777665443322 223355666666666665 4678899999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhh
Q 022936 83 LKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISA 118 (290)
Q Consensus 83 i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~ 118 (290)
+.++.|+++++++++++||++++.++.+..+++.|+
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999886
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.55 E-value=1.7e-06 Score=75.67 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred HHHHH-HHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccc----cc
Q 022936 55 LPVNV-IFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS----FH 129 (290)
Q Consensus 55 ~~~~~-~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~----~~ 129 (290)
...|+ .+..+..++..|+.+.|.+..+-+.+..-++..+++..++|||++++.+.+..+++.|..++....++ .+
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t 132 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHT 132 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCC
Confidence 34443 46678889999999999999999999999999999999999999999999999999999876432111 11
Q ss_pred ---------hhh---HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHH---HHhHHHHHHHHHHHhcchh
Q 022936 130 ---------AVG---YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN---NSLSLPLGVLLVIVFNEVD 194 (290)
Q Consensus 130 ---------~~G---~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 194 (290)
..+ +...... +...+.....+|.-+ -+. ..|. +..+..-.+..-.......
T Consensus 133 ~~~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~----------~~i---~vyi~i~sl~Gs~tvl~~K~i~~~i~ 198 (300)
T PF05653_consen 133 LDELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGR----------RNI---LVYISICSLIGSFTVLSAKAISILIK 198 (300)
T ss_pred HHHHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhcc----------cce---EEEEEEeccccchhhhHHHHHHHHHH
Confidence 012 1111111 111111111111100 011 1111 1111110000000000000
Q ss_pred hhh-cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhh-hhHHHHHHhHhhccCC--CCchh----HH
Q 022936 195 YLS-RTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSL-NKIPLSVAGILLFKVP--TSLEN----SA 266 (290)
Q Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~-~~v~~~i~~~~~~~e~--~~~~~----~~ 266 (290)
... ..+...++..|..++...++....-+..++++++.+++...-+.++ =...+++-|.++|+|. .++.+ ..
T Consensus 199 ~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~ 278 (300)
T PF05653_consen 199 LTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLC 278 (300)
T ss_pred HHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 000 1112234555666555555555555566789998877655444433 3456777788888864 55544 45
Q ss_pred HHHHHHhhhhhhheeeccccc
Q 022936 267 SIFFGLLAGVFFARAKMWERS 287 (290)
Q Consensus 267 G~~lil~g~~l~~~~~~~~~~ 287 (290)
|..+++.|+++.+..|.+|..
T Consensus 279 G~~~ii~GV~lL~~~~~~~~~ 299 (300)
T PF05653_consen 279 GFLIIIIGVFLLSSSKDKEIS 299 (300)
T ss_pred HHHHHHHhhheeeccCchhcc
Confidence 677788888888766665543
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.54 E-value=2.1e-06 Score=77.02 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
=+...+..-++|+.+.++.|..++. .+++....++=...+.+.++++....+... ..+.. +...|..+
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~--------G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~~-~~~~~~~l 81 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSK--------GLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPPL-SVSILSKI 81 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHC--------CCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcc-hHHHHHHH
Confidence 4556677888999999999998863 678888888888888877777665432110 11111 11124455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhh------ccCCCCchhHHHHHHHHhhhhhhh
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILL------FKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~------~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
...|++++..+...+.++++++|+.++++.+..|+.+.++++++ ++|+++..+++|+++.+.|+.+..
T Consensus 82 ~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 82 GLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 56777774444455679999999999999999999999999999 699999999999999999988754
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.44 E-value=2.6e-06 Score=63.20 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhe
Q 022936 59 VIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 122 (290)
Q Consensus 59 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~ 122 (290)
.++....++..++++.+|++.+..+-++.|+++.+++++++|||++++++.++.+++.|+.++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999999999999999999999999999999999998764
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.42 E-value=1.1e-05 Score=61.49 Aligned_cols=123 Identities=21% Similarity=0.187 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 022936 131 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 210 (290)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (290)
.|+++.+.+.++.+..+++.|+-+++.+ +.+... . .. .... ... +| ..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g------~~~~~~---~-~~-----~~~~-~~~-------------~p---~~ 49 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP------LLSHAW---D-FI-----AALL-AFG-------------LA---LR 49 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC------Cccchh---H-HH-----HHHH-HHh-------------cc---HH
Confidence 4789999999999999999998765311 111100 0 00 0000 000 11 11
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcCcchhhhhhhhhhHHHHHHhHh--hccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 211 MTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL--LFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 211 ~~~~~~~~~~~~~~~~-~~i~~~~~~~~si~~~~~~v~~~i~~~~--~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
.++.|+.++..++..| .++++.+...+.-.....++...+.++. +|||++|+.+++|++++++|+++.+..++|+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 2455666666666554 6899999998888777777777777774 7999999999999999999999988655543
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.37 E-value=9.8e-06 Score=68.73 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=109.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 022936 129 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 208 (290)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
+..|++.++.+.+.++..-.+.|-+. ..++.|+..+--+.+.|+.+........+.+.++ ..++|.-+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~----------~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~ 72 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE----------PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTL 72 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHH
Confidence 34799999999999999999888874 3578888888888888887776666666665554 23344445
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 209 LVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
......+.. ...|...| |++.+-....+|.--.++|.+.+++|.++++|+++..|++.+++..+|+..-.+
T Consensus 73 ~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 73 LMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 555555544 34455554 789998999999999999999999999999999999999999999999887654
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.33 E-value=2.8e-05 Score=69.76 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC-hhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 022936 130 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 208 (290)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
+.-..+.+..-.+...++++.|..++ +.+ |+.+..++...+...+.++.. .+ .....+.+ .....|
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~---------~~~~P~~l~~~~~~~~~l~~~~~~~-~~-~~~~~~~~--~~~~~~ 114 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALN---------MLPLPWTISSLQLFVGWLFALLYWA-TG-FRKIPRIK--SLKLFL 114 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------hCChhHHHHHHHHHHHHHHHHHHHH-hC-CCCCCCCC--CHHHHH
Confidence 33444455555555667888888876 356 899888888877665544332 11 11111111 012345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 209 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
..++..|+++.......+.+.+.++++.++++-..+|+++++++.++++|+++..+++|+++++.|+.+...
T Consensus 115 ~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 115 KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 567778888877666666889999999999999999999999999999999999999999999999988654
No 52
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.32 E-value=8.8e-06 Score=60.68 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecc
Q 022936 211 MTLSGFLGLAISFT-SMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 211 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
.+..|.++...++. .+.+.++.++ ..+......|+++.++|.++++|+++..++.|+++++.|+.+..+.+.+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44455555534443 3468888885 7788889999999999999999999999999999999999998775543
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.28 E-value=2e-05 Score=68.91 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHc-CccccCcccHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHH
Q 022936 17 GISLMVYQNFISVVTVTILSFL-GVISTEPLTWRLIKVWLPVNVI-FVGMLITSMFSLKYINVAMVTVLKNVTNVITAVG 94 (290)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll 94 (290)
+...+.+++.++...+.+.... +.......+.+.+......+++ ......++++++++.+++.+.++.++.|++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~ 256 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLL 256 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 5667788888877665554322 2111112244566666666665 4568889999999999999999999999999999
Q ss_pred HHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 95 EMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 95 ~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
+++++||++++.++.+.++++.|+.+....
T Consensus 257 ~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 257 GTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887543
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.26 E-value=4.5e-05 Score=67.02 Aligned_cols=128 Identities=7% Similarity=-0.014 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHH
Q 022936 138 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFL 217 (290)
Q Consensus 138 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (290)
.--.+...+++++|..+++ -..|..+.+.+...+.....+... .+ .. +.+. .+...|..+...|++
T Consensus 9 ~w~~~~~~~~~~NK~~l~~--------~~~P~~~~~~~~~~~~~~~~~~~~-~~-~~---~~~~-~~~~~~~~~~~~g~~ 74 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNV--------FPYPYFKTLISLAVGSLYCLLSWS-SG-LP---KRLK-ISSALLKLLLPVAIV 74 (302)
T ss_pred HHHHHHHHHHHHHHHHHhh--------CChhHHHHHHHHHHHHHHHHHHHH-hC-CC---CCCC-CCHHHHHHHHHHHHH
Confidence 3344455566777887752 135777777777666555443311 11 11 1111 112235556667777
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 218 GLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
........+.+++++++...++.....|+++.+++.++++|+++..+++|.++++.|+.+..
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 65555566789999999999999999999999999999999999999999999999997754
No 55
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.25 E-value=1.8e-05 Score=69.26 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhhHHHHH
Q 022936 13 NFDAGISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPVNVI-FVGMLITSMFSLKYINVAMVTVLKNVTNVIT 91 (290)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~ 91 (290)
+.+ |.... ++...+.+.+.+....... ....+.+.+...+..+++ ..+...++++++++++++.++.+.++.|++.
T Consensus 173 ~~~-~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a 249 (293)
T PRK10532 173 EHG-PATVA-IGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALA 249 (293)
T ss_pred cCC-chHHH-HHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHH
Confidence 345 55554 4444444444333322211 122344444444455655 4568889999999999999999999999999
Q ss_pred HHHHHHHhCccCChHHHHHHHHHHHhhhhhee
Q 022936 92 AVGEMYLFNKRHDNRVWAALFLMIISAISGGI 123 (290)
Q Consensus 92 ~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~ 123 (290)
.++++++++|++++.++++.++++.|++....
T Consensus 250 ~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 250 AVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988743
No 56
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.20 E-value=2.1e-05 Score=68.95 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=68.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhee
Q 022936 45 PLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 123 (290)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~ 123 (290)
..+.+.+...+..++.......++++++++.+++..+...++.|++..++++++++|+++..++.+.++++.|+.+...
T Consensus 209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3455556555555655667899999999999999999999999999999999999999999999999999999887643
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.19 E-value=0.00087 Score=59.44 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=140.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHHHHHHHhCccC-------ChHHHHHHHHHHH
Q 022936 45 PLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRH-------DNRVWAALFLMII 116 (290)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ll~~~~~~e~~-------~~~~~~~~~l~~~ 116 (290)
..+.+.+..-+..+++....+.....+.+++.+|...-+. .++-+...++..++++|=. ......+++++++
T Consensus 67 ~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 67 SFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred hcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 3556666667778888999999999999999988776544 6777788888888887632 2456778889999
Q ss_pred hhhhhee----ccc--------cc-chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHH----hH
Q 022936 117 SAISGGI----TDL--------SF-HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LS 179 (290)
Q Consensus 117 G~~l~~~----~~~--------~~-~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 179 (290)
|+++.+. .|. ++ ...|..+++.+.+.++.|......-+.. ++.......++.....-+.. .+
T Consensus 147 Gi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~-~~~a~~~g~~~~~~~lp~~~~~~~G~ 225 (345)
T PRK13499 147 GVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPM-HEAAAALGVDPLYAALPSYVVIMGGG 225 (345)
T ss_pred HHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccch-hhhhhhcCCCchHHHHHHHHHHHHHH
Confidence 9999876 332 12 2479999999999999999544443211 10000112333322222221 11
Q ss_pred HHHHHHHHHH---h-cchhhhhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhh---hh-hhhhHHHH
Q 022936 180 LPLGVLLVIV---F-NEVDYLSRTPLLRL--PSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSL---VG-SLNKIPLS 249 (290)
Q Consensus 180 ~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si---~~-~~~~v~~~ 249 (290)
....+.++.. . .+++...+...... ..-....+..|+.-...++....+..+.+.....+ +. ...-+++.
T Consensus 226 ~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viist 305 (345)
T PRK13499 226 AITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGN 305 (345)
T ss_pred HHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHH
Confidence 1222222221 1 11111111111000 11123345556665555555455666665444433 34 66668999
Q ss_pred HHhHhhccCCCC------chhHHHHHHHHhhhhhhhe
Q 022936 250 VAGILLFKVPTS------LENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 250 i~~~~~~~e~~~------~~~~~G~~lil~g~~l~~~ 280 (290)
+.|+ +++|.=+ ...++|+++++.|..+...
T Consensus 306 lwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 306 LWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred Hhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 9999 5999876 5668999999999887654
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.12 E-value=5.2e-05 Score=59.45 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=89.7
Q ss_pred eehhhhhc-----cCCChhHHHHHHHHHHHHHHHHHHHH-cCcccc----Ccc-------cHHHHHHHHHHHHHHHHHHH
Q 022936 4 VNKFVLSG-----YNFDAGISLMVYQNFISVVTVTILSF-LGVIST----EPL-------TWRLIKVWLPVNVIFVGMLI 66 (290)
Q Consensus 4 ~nK~~~~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~-~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~ 66 (290)
..|..+++ .+.+ |..+..+....+.+.+.+... .+..+. .+. +.+.+..++..+++....+.
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 96 (153)
T PF03151_consen 18 LIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNL 96 (153)
T ss_pred HHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 34666665 4677 888888888777776665543 222211 011 11234445556677788999
Q ss_pred HhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhe
Q 022936 67 TSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 122 (290)
Q Consensus 67 ~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~ 122 (290)
..+..++++++-+++++.....+.+.+.+.++++|+++..++.|+++.+.|..+-+
T Consensus 97 ~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 97 SSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999999999987643
No 59
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.99 E-value=0.00012 Score=64.27 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhee
Q 022936 45 PLTWRLIKVWLPVNVI-FVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 123 (290)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~ 123 (290)
+.+.+.+...+..+++ ......++++++++.+++.+..+..+.|++..++++++++|+++..++.+.++++.|+.+...
T Consensus 208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666655 456888999999999999999999999999999999999999999999999999999987654
Q ss_pred c
Q 022936 124 T 124 (290)
Q Consensus 124 ~ 124 (290)
+
T Consensus 288 ~ 288 (299)
T PRK11453 288 G 288 (299)
T ss_pred c
Confidence 3
No 60
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.90 E-value=0.00043 Score=60.90 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhhhhhccccCCC-ChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 022936 143 TASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 221 (290)
Q Consensus 143 ~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (290)
+..+.+.++++.+.. ... .++.+++.+.........+...... . .+....+ +.-....+++....
T Consensus 12 ~~~~g~~qE~i~~~~------~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~-~~~~~~~--~~~~~~~~~~~~~~ 77 (303)
T PF08449_consen 12 CCSYGILQEKIMTTP------YGSPFPLFLTFVQFAFNALFSFILLSLFK-----F-PKSRKIP--LKKYAILSFLFFLA 77 (303)
T ss_pred HHHHHHHHHHHHcCC------CCCcccHHHHHHHHHHHHHHHHHHHHhcc-----c-cCCCcCh--HHHHHHHHHHHHHH
Confidence 334567788887631 122 3666677776666655554433322 0 1111111 22233445555566
Q ss_pred HHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 222 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 222 ~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
....+.++++++..+..+.-..+++..++++.++++++.+..++.+.+++.+|+.+....+.+++
T Consensus 78 ~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 78 SVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 66777899999999999999999999999999999999999999999999999999887665443
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.88 E-value=0.00039 Score=60.74 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
|+++++.++++++...+..|+.. +.++.+.. -...+............+ |..+.+..+..-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~----------g~~~~~~~--~~~~g~l~~~~~~~~~~~-------~~~~~~~~~~~g 62 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG----------GGPYSQTL--GTTFGALILSIAIAIFVL-------PEFWALSIFLVG 62 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC----------CCHHHHHH--HHHHHHHHHHHHHHHHhC-------CcccccHHHHHH
Confidence 67889999999999999988862 12333322 122222222222222111 111223445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhhh-hhhHHHHHHhHhhccCCCCchh----HHHHHHHHhhhhhhheeecc
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~-~~~v~~~i~~~~~~~e~~~~~~----~~G~~lil~g~~l~~~~~~~ 284 (290)
+..|+.-...|+..+.++++.+....-...+ ..++...+.+.++|+|+.+.++ ++|+++++.|+++....+.+
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~ 140 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK 140 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence 6666665556677778999998888866666 7788999999999999999999 99999999999887665433
No 62
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.85 E-value=0.00011 Score=54.42 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=48.6
Q ss_pred HHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 227 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 227 ~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
.++++.+...+...-.+.++.+.++|+++|||++|+.+++|+++++.|+.+..
T Consensus 56 ~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 56 LVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 58888988888888889999999999999999999999999999999988764
No 63
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.83 E-value=0.00018 Score=54.75 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHH-HHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHH--HhCccCChHHHHHHHHHHHhhhhheec
Q 022936 55 LPVNV-IFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMY--LFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 55 ~~~~~-~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~--~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
+..++ ++....++.++++++.|++.+..+.+..++.+.+.++. ++||++++.++.+++++++|+.++..+
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44554 46779999999999999999999999999888888885 799999999999999999999998643
No 64
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0002 Score=61.67 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecccccc--------
Q 022936 58 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFH-------- 129 (290)
Q Consensus 58 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~-------- 129 (290)
-+.+......++.|..+.|++..+-+.++..+..++++..++|||.+....+++++++.|..++....+..+
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el 150 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEV 150 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHH
Confidence 345677888899999999999999999999999999999999999999999999999999998865432110
Q ss_pred -----hhhHHH-HHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHH---HHHhcchhh-hhcC
Q 022936 130 -----AVGYAW-QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLL---VIVFNEVDY-LSRT 199 (290)
Q Consensus 130 -----~~G~~~-~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 199 (290)
-.+++. ...-.+...+-..+.|+. .....++.|..+.+....+=. --+.+-.+. ....
T Consensus 151 ~~~~~~~~Fliy~~~iil~~~il~~~~~p~------------~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~ 218 (335)
T KOG2922|consen 151 WELATEPGFLVYVIIIILIVLILIFFYAPR------------YGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN 218 (335)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHheeeccc------------ccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence 112111 111111111111112211 122233445444333321100 000000111 1112
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh-hhhhHHHHHHhHhhccC--CCCchh----HHHHHHHH
Q 022936 200 PLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG-SLNKIPLSVAGILLFKV--PTSLEN----SASIFFGL 272 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~-~~~~v~~~i~~~~~~~e--~~~~~~----~~G~~lil 272 (290)
+....+..|...+....+....-...+++++..++...+-+. ..=.-+++..|.++|.| ..+..+ ..|..+++
T Consensus 219 ~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~ 298 (335)
T KOG2922|consen 219 NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIF 298 (335)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhh
Confidence 222334556555555555444433456777766544444333 44466777788888876 345444 56777888
Q ss_pred hhhhhhheeecccc
Q 022936 273 LAGVFFARAKMWER 286 (290)
Q Consensus 273 ~g~~l~~~~~~~~~ 286 (290)
.|+++.+..|.++.
T Consensus 299 ~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 299 LGIFLLHRTKDMEI 312 (335)
T ss_pred heeeEeeeeccccc
Confidence 99998877666654
No 65
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=0.0033 Score=54.29 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 022936 131 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 210 (290)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (290)
.+....+..++.++......|+..++ +.+.....++....+.+...+... . +. ....+...+ .+..
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~--~~~~ 72 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVES--------LDPFLFAAALRFLIAALLLLPLLL-L-EP--RGLRPALRP--WLLL 72 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHHHHHH-h-hc--ccccccccc--hHHH
Confidence 56677777778888888877777541 234444445444444443221111 1 11 001111111 1223
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhcCcchhhhhhhhhhHHHHHHhH-hhccCCCCchhHHHHHHHHhhhhhhheeecc
Q 022936 211 MTLSGFLGLAI-SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGI-LLFKVPTSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 211 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~-~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
...+.+.... .+..+.+++++++...+......|+...+++. .+++|+++..+++|..+.+.|+++.......
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 73 -LLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 3334444444 44445689999999999999999999999997 6669999999999999999999988765443
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.53 E-value=0.00073 Score=50.57 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 54 WLPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 54 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
....-+++....++...+++++|.+.+-.+ ...--+.+.+.+.+++||++++.++.++.+++.|+..+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 345556678899999999999999987666 56888999999999999999999999999999999988543
No 67
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.53 E-value=0.005 Score=47.50 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-ChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 133 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
.++++.+...-+.+...+.|+-+ +. +++.-.+.+...+...+.......++. +..+.+ +...|.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~---------~~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~---~~p~w~-- 67 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGK---------ALGSPLVASFISFGVGFILLLIILLITGRP-SLASLS---SVPWWA-- 67 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhCccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhc---cCChHH--
Confidence 56778888888888888888754 23 488888888888888777766665543 121111 111132
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhh-HHHHHHhHh-hc---cCCCCchhHHHHHHHHhhhhh
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNK-IPLSVAGIL-LF---KVPTSLENSASIFFGLLAGVF 277 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~-v~~~i~~~~-~~---~e~~~~~~~~G~~lil~g~~l 277 (290)
...|+++...-++....+++.++.........-. +.+.++..+ +| .+++++.+.+|+++++.|+.+
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3478888887777778999999998888776554 444455443 33 368999999999999999763
No 68
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0001 Score=61.08 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=146.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHHHHHHHhCccCChHH----HHHHHHHHHhh
Q 022936 44 EPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRV----WAALFLMIISA 118 (290)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ll~~~~~~e~~~~~~----~~~~~l~~~G~ 118 (290)
|..+.+.+..-+..+++....+...+.|.+++.+|-+.-+. .+.-+-+-+++.+.++|=.+..+ ..++++++.|+
T Consensus 52 p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 52 PELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred CccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhh
Confidence 45565666666677788899999999999999888765444 45666777888888999665544 35678888899
Q ss_pred hhheeccc--------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHh
Q 022936 119 ISGGITDL--------SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 190 (290)
Q Consensus 119 ~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (290)
.+.+..|. ++.-.|....+.|.+.|-.|.+..+.. +.+.++..+-+........+.+....
T Consensus 132 ~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f-----------~v~g~saiLPqAiGMv~~ali~~~~~ 200 (288)
T COG4975 132 YLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF-----------DVDGLSAILPQAIGMVIGALILGFFK 200 (288)
T ss_pred eEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc-----------cccchhhhhHHHHHHHHHHHHHhhcc
Confidence 99887654 112468888888999999998876665 34555544444443333333333322
Q ss_pred cchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhH----H
Q 022936 191 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----A 266 (290)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~----~ 266 (290)
+|- ..+...|. -+..|+.--..|...+.+.++.+-.+.=..+.+..+.+++-|+++++|+=|.+++ +
T Consensus 201 ~~~--------~~~K~t~~-nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 201 MEK--------RFNKYTWL-NIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred ccc--------chHHHHHH-HHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 211 11122232 2344555445565555566677666666667777899999999999999998775 6
Q ss_pred HHHHHHhhhhhhheee
Q 022936 267 SIFFGLLAGVFFARAK 282 (290)
Q Consensus 267 G~~lil~g~~l~~~~~ 282 (290)
|+.++++|..+....|
T Consensus 272 Giilivvgai~lg~~K 287 (288)
T COG4975 272 GIILIVVGAILLGIAK 287 (288)
T ss_pred hHHHHHHHhhhhheec
Confidence 7788888877665443
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.43 E-value=0.0014 Score=48.34 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 56 PVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 56 ~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
..-+++....++...+++++|.+.+-.+ ...--+.+.+.+++++||++++.++.++.+++.|+......
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445677788888999999999988776 45788889999999999999999999999999999988643
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.39 E-value=0.0013 Score=49.25 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHhhcCcc-hhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 227 WFLHQTGAT-TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 227 ~~i~~~~~~-~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
.++|+.+-. -+++...+..+.+.++|+++|||++|+.+++|+++++.|++..+...+++
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 466665433 35566667888899999999999999999999999999999987655443
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.33 E-value=0.0014 Score=48.42 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHhhcCcc-hhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeec
Q 022936 227 WFLHQTGAT-TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 283 (290)
Q Consensus 227 ~~i~~~~~~-~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~ 283 (290)
.++|+.+-. .+++...+..+.+++.|+++|||++|+.+++|+++++.|++..+..++
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 466666433 456667778889999999999999999999999999999999876543
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.29 E-value=0.0098 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHH-HHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhe
Q 022936 55 LPVNVIFVGMLITSMFSLKYINVAMVTV-LKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 122 (290)
Q Consensus 55 ~~~~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~ 122 (290)
...-+++....++...+++++|.+.+-. -...-.+.+.+.+.+++||++++.++.++.+++.|+....
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3444557778888899999999887654 4457788899999999999999999999999999998763
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0027 Score=46.09 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHH-HHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 55 LPVNVIFVGMLITSMFSLKYINVAMVT-VLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 55 ~~~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
...-+++.....+.-.|++++|.+.+- +-...-.+.+.+.+++++||+.+..++.++.+++.|+......
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 444556777888889999999988764 4456778889999999999999999999999999999987543
No 74
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.24 E-value=0.011 Score=52.37 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 208 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
|.+++ .+++=...||....+.+.++.+...++.....+.++++++++++++.++.|++|+.+++.|+.+....
T Consensus 80 w~y~l-la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 80 WKYFL-LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 44433 46777888999889999999999999999999999999999999999999999999999999886654
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.22 E-value=0.0039 Score=45.57 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhee
Q 022936 55 LPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 123 (290)
Q Consensus 55 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~ 123 (290)
...-+++....++...+++.+|.+.+-.+ ...-.+.+.+.+.+++||+.++.++.++.+++.|+.....
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34455677888888999999998876544 4577889999999999999999999999999999998753
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.12 E-value=0.014 Score=42.84 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHhhcCc-chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhh
Q 022936 227 WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 279 (290)
Q Consensus 227 ~~i~~~~~-~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~ 279 (290)
.+.|+.+. +.+++..-+-.+.+.+.|+++|+|++|+.+++|+++++.|++..+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 46776653 457888888899999999999999999999999999999998753
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.05 E-value=0.0023 Score=54.40 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecc
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
..-+++-.+.|...+.++++.+|.+..+....|.+.+.++++++++.+++..||.++.+...|+.+.+.....
T Consensus 21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3445555566777778999999999999999999999999999999999999999999999999998765443
No 78
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.02 E-value=0.0048 Score=54.06 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=81.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 022936 129 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 208 (290)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
...|..+++.++++.+....++||-..+.+. ++.+.+ .+ + .+...++..|
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~--~~~~~~-~~--------------~-------------~~~l~~~~W~ 54 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR--GSLRAG-SG--------------G-------------RSYLRRPLWW 54 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc-ch--------------h-------------hHHHhhHHHH
Confidence 3579999999999999999999986543211 000000 00 0 0001112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 209 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
..++ ..+.+-..++ .+....+++..+-++.+.-+...+++..+++|+++..++.|+++++.|..+......++
T Consensus 55 ~G~~-~~~~g~~~~~---~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~ 127 (300)
T PF05653_consen 55 IGLL-LMVLGEILNF---VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKE 127 (300)
T ss_pred HHHH-HHhcchHHHH---HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCC
Confidence 3322 2333434444 36666777778888888999999999999999999999999999999998765443333
No 79
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0069 Score=43.98 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=47.3
Q ss_pred HHHhhcCc-chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 227 WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 227 ~~i~~~~~-~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
+++|+.+- +-+++.+-+-.+.+.+.|+++|+|+.++.+++|+.+++.|++..+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 46777643 45788888999999999999999999999999999999999887653
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.86 E-value=0.005 Score=44.03 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhhhcccchhHH-HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHH
Q 022936 57 VNVIFVGMLITSMFSLKYINVAMV-TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLM 114 (290)
Q Consensus 57 ~~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~ 114 (290)
.-.++....++..++++++|.+.+ .+......+.+.+.+.+++||+++..++.++.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334678888999999999999887 4456789999999999999999999999998753
No 81
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.047 Score=48.06 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcch--hh-hhcCC--CCcchhHHHH
Q 022936 136 QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DY-LSRTP--LLRLPSFWLV 210 (290)
Q Consensus 136 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~ 210 (290)
.+...+..+.+....|...+. ++.++.+.+.++.+=..-++++....+..... .. ..+.. .+.++..-.-
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~-----~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTR-----EKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcC-----CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 334444555555555554332 13356777777777777777666555432101 11 11111 1112211112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhee
Q 022936 211 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 281 (290)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~ 281 (290)
+..-+++-.+.|...+....+.+|++..+...+|...+.++++.+++++++..||...++...|+...+..
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 22223333344555566899999999999999999999999999999999999999999999999998843
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.84 E-value=0.0092 Score=43.61 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHhhcCc-chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 227 WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 227 ~~i~~~~~-~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
.+.|+.+- ..+++..-+..+.+.+.|+++|+|++|+.+++|+++++.|++..+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 46666543 4578888888999999999999999999999999999999988653
No 83
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.67 E-value=0.022 Score=47.70 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHH-HHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 55 LPVNVIF-VGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 55 ~~~~~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
+..+++- ..-..+...++++.|..++.++-++.|.+.++.++++++|.+|..+|.++..++.+..-.
T Consensus 213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3444443 457788899999999999999999999999999999999999999999999888877643
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.58 E-value=0.031 Score=49.74 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHH--HHhHHHHHHHH---HHHhcchhhhhcCCCCcc
Q 022936 130 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN--NSLSLPLGVLL---VIVFNEVDYLSRTPLLRL 204 (290)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 204 (290)
..|+++.+++.+|++-+.+-.||. + + -.||.. +- .+++.. ..|+ .+..++..+.. . ..+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k---------~-w~wE~~-W~v~gi~~wl-~~~~~~g~~~~~~f~~~~--~-~~~ 69 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-K---------K-WSWETM-WSVGGIFSWL-ILPWLIAALLLPDFWAYY--S-SFS 69 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-C---------C-CchhHH-HHHHHHHHHH-HHHHHHHHHHhhhHHHHH--H-hcC
Confidence 479999999999999999988883 2 1 233432 21 111111 1121 11111111111 1 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh-hhhhhhhHHHHHHhHhhccCCC---C----chhHHHHHHHHhhhh
Q 022936 205 PSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYS-LVGSLNKIPLSVAGILLFKVPT---S----LENSASIFFGLLAGV 276 (290)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s-i~~~~~~v~~~i~~~~~~~e~~---~----~~~~~G~~lil~g~~ 276 (290)
+..+....++|++--..|.....++|+.+-...- +..-+.-+...+++.+++||-. + ....+|++++++|+.
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 3445666777877777777777788877655443 3345667888899999998643 2 457789999999999
Q ss_pred hhhe
Q 022936 277 FFAR 280 (290)
Q Consensus 277 l~~~ 280 (290)
+.++
T Consensus 150 l~s~ 153 (345)
T PRK13499 150 IVGR 153 (345)
T ss_pred HHHH
Confidence 9887
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.47 E-value=0.002 Score=54.17 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 213 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
+=|+.|+..-+..|++.++.+-..+++.....|++++++++.+++|+.|....+|..+.+.|+++..+
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 44555555555556688888888899999999999999999999999999999999999999998754
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.37 E-value=0.011 Score=42.29 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHhhcCcchh-hhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHH
Q 022936 227 WFLHQTGATTY-SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFG 271 (290)
Q Consensus 227 ~~i~~~~~~~~-si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~li 271 (290)
.+.|+.+...+ ++...+..+...+.|+.+|||++|+.++.|++++
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 57787765544 6777788999999999999999999999999875
No 87
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.11 E-value=0.063 Score=46.01 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHH----HHHHHHHhhh
Q 022936 49 RLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWA----ALFLMIISAI 119 (290)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~----~~~l~~~G~~ 119 (290)
|+-.+-+..++++...+.++..|.+....+..-.+.++.++...+.+.+++||+=+++++. ++++++.|.+
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 3344557889999999999999999999999999999999999999999999988877654 4444444443
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.99 E-value=0.023 Score=41.93 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=51.8
Q ss_pred HHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 61 FVGMLITSMFSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 61 ~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
+......+++.+...+.|.+.-+. +++=++|++.++++.+|..+++++.++.+++.|+.+.
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 445667778899999999887774 8999999999988777778999999999999998764
No 89
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.2 Score=34.64 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 022936 131 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 210 (290)
Q Consensus 131 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (290)
...+.++.+..+...+.-.+.|+-+.. + +|.--.+.++..+...+.......++.+..... ...| |..
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~-------~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~--~~~p--wW~ 72 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYL-------G-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAV--ASAP--WWA 72 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHc-------C-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhc--cCCc--hHH
Confidence 456777888888888888888875521 1 455555666666666665555443222211110 1111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhh-hHHHHHHhHh-hcc---CCCCchhHHHHHHHHhhhhhhhe
Q 022936 211 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLN-KIPLSVAGIL-LFK---VPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~-~v~~~i~~~~-~~~---e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
...|+++..+-..+.....+.+++++....... .+.+.++..+ ++| .+++...++|+++++.|+++...
T Consensus 73 -~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 73 -WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred -HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 345677766666666778888887766655443 3444444443 233 56999999999999999665543
No 90
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.025 Score=47.23 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
+++.++.=++.++.--....|. .-+|.+...-+++.++.+.+...++.. |.. +...+...
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~-----------GG~p~qQ~lGtT~GALifaiiv~~~~~--------p~~-T~~~~iv~ 62 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF-----------GGKPYQQTLGTTLGALIFAIIVFLFVS--------PEL-TLTIFIVG 62 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec-----------CCChhHhhhhccHHHHHHHHHHheeec--------Ccc-chhhHHHH
Confidence 4566667777776554443333 224555455555555554444333211 111 12234556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhhhhh-hhhhHHHHHHhHhhccCCCCchhH----HHHHHHHhhhhhhheeec
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGATTYSLVG-SLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARAKM 283 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~~~si~~-~~~~v~~~i~~~~~~~e~~~~~~~----~G~~lil~g~~l~~~~~~ 283 (290)
+.+|.+-...+...+++.+..+...+.-++ -.+-+-+.+.|++.|+|..+..+. +..++++.|+.+.++.++
T Consensus 63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 777877777777777787777766665554 345688889999999998887664 466778889888877665
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.62 E-value=0.07 Score=47.29 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 209 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
...++-|.+-+..+|..+-+++.++.....++......++..+|.++-+|++|+...++..+.+.|+++.+..+.|+
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 34566677778888888889999999999999999999999999999999999999999999999999988765544
No 92
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.52 E-value=0.72 Score=35.51 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc-ccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHH
Q 022936 16 AGISLMVYQNFISVVTVTILSFLGVI-STEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK-NVTNVITAV 93 (290)
Q Consensus 16 ~p~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~l 93 (290)
.|..-++.-+..+.+.+.++....+. +.++.. +.-.....-+++-.....+..++...+.++....+. .-.-+...+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 38888888888888777665543322 222221 111223346777788888899999999988777655 556677777
Q ss_pred HHHH----HhCccCChHHHHHHHHHHHhhhh
Q 022936 94 GEMY----LFNKRHDNRVWAALFLMIISAIS 120 (290)
Q Consensus 94 l~~~----~~~e~~~~~~~~~~~l~~~G~~l 120 (290)
++.+ .-|+++++.|..++.+.+.|+.+
T Consensus 108 iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7875 34678999999999999999864
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.91 E-value=0.073 Score=46.79 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=86.3
Q ss_pred hhhhh--ccCCChhHHHHHHHHHHHHHHHH-HHHHc--C-cc---ccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 022936 6 KFVLS--GYNFDAGISLMVYQNFISVVTVT-ILSFL--G-VI---STEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYIN 76 (290)
Q Consensus 6 K~~~~--~~~~~~p~~l~~~r~~~~~~~l~-~~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 76 (290)
|.++. +.+++ +..+..++--++.+.+. +.... + .. ...+++.+ ...+...+++....|...+..+.+++
T Consensus 183 ~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~~f~~Nls~f~~ig~tS 260 (316)
T KOG1441|consen 183 KKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVLAFLLNLSAFLVIGRTS 260 (316)
T ss_pred HHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 44552 45677 88888888877776665 44321 2 11 12233333 23334445777788888999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhhee
Q 022936 77 VAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 123 (290)
Q Consensus 77 ~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~ 123 (290)
+-++++.....-+.+.+.++.+++++.++.+..+..+.++|+.+-+.
T Consensus 261 alT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 261 ALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred chhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999998754
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.99 E-value=0.18 Score=42.07 Aligned_cols=63 Identities=10% Similarity=0.247 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhh
Q 022936 58 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAIS 120 (290)
Q Consensus 58 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l 120 (290)
.+..+....+-...+++.+.....+...+.++++.+++.++++|+++...+.+..+.+.|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344555666778888999999999999999999999999999999999999999998888653
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.91 E-value=0.61 Score=34.47 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHhhcCcchhhhh-hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhh
Q 022936 228 FLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 278 (290)
Q Consensus 228 ~i~~~~~~~~si~-~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~ 278 (290)
.+++.+-+.+.-+ +.+.-+++.+.++++.+|..+...++|+++++.|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 4555544444443 57777899999988888888999999999999998653
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.66 E-value=1.1 Score=37.55 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=56.2
Q ss_pred HHHHHHHHHH-HHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecc
Q 022936 214 SGFLGLAISF-TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 214 ~~~~~~~~~~-~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
.+..++.++. +.+.+++..+=-+..+.-.-||+-.+++|+.+.+..-+|..+....+|.+|+.++.+.+.|
T Consensus 90 Acs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 90 ACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 3444555544 3456777776666667778999999999999999999999999999999999998875444
No 97
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.50 E-value=1.7 Score=36.00 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHc-Ccccc----CcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhH
Q 022936 13 NFDAGISLMVYQNFISVVTVTILSFL-GVIST----EPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVT 87 (290)
Q Consensus 13 ~~~~p~~l~~~r~~~~~~~l~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~ 87 (290)
.|. ...-+++..+.+..++..+... ..+.. ..++.+.+..++..|++-.+..++.-++++-++..++.+..++.
T Consensus 182 Nf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred ccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 454 5667788888888777666543 22211 23344456667778888889999999999999999999999988
Q ss_pred HHHHHHHHHHHhCccCChHHHHHHHHHH
Q 022936 88 NVITAVGEMYLFNKRHDNRVWAALFLMI 115 (290)
Q Consensus 88 pi~~~ll~~~~~~e~~~~~~~~~~~l~~ 115 (290)
-...++-+.++++|..+..++.++.+.+
T Consensus 261 Klp~alaGlvffdap~nf~si~sillGf 288 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLSIFSILLGF 288 (309)
T ss_pred hChHHHhhhhhcCCchhHHHHHHHHHHH
Confidence 8777777877788877777776665433
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.29 E-value=3 Score=36.90 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 022936 130 AVGYAWQIINCFLTASYSLTLRRV 153 (290)
Q Consensus 130 ~~G~~~~l~s~~~~a~~~v~~~~~ 153 (290)
..|+++..+++++.+.+.+-.||.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv 29 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV 29 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc
Confidence 479999999999999999988887
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=90.69 E-value=0.55 Score=40.04 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 022936 132 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 211 (290)
Q Consensus 132 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (290)
|++.++.|+++++...+=.||.- ..+++-.+.+.+...........+..+ .|. ++...
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~----------~gDg~~fQw~~~~~i~~~g~~v~~~~~-------~p~-----f~p~a 58 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD----------TGDGFFFQWVMCSGIFLVGLVVNLILG-------FPP-----FYPWA 58 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc----------CCCcHHHHHHHHHHHHHHHHHHHHhcC-------CCc-----ceeHH
Confidence 56778888888887777666652 224544444443333332222222211 111 12233
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcc-hhhhhhhhhhHHHHHHhHh-hccCC-----CCchhHHHHHHHHhhhhhhheeecc
Q 022936 212 TLSGFLGLAISFTSMWFLHQTGAT-TYSLVGSLNKIPLSVAGIL-LFKVP-----TSLENSASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 212 ~~~~~~~~~~~~~~~~~i~~~~~~-~~si~~~~~~v~~~i~~~~-~~~e~-----~~~~~~~G~~lil~g~~l~~~~~~~ 284 (290)
++.|.+-...|....-.+|.++-. -..+.+..+-+..-..|-+ +||++ -++.+++|++++++|..++...|.+
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 344555444455444456655422 1223334444444444432 55532 3488999999999999999876655
Q ss_pred c
Q 022936 285 E 285 (290)
Q Consensus 285 ~ 285 (290)
+
T Consensus 139 ~ 139 (254)
T PF07857_consen 139 E 139 (254)
T ss_pred C
Confidence 5
No 100
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.85 E-value=11 Score=32.82 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhhhh-hhccccCCC-ChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHH
Q 022936 142 LTASYSLTLRRVMDTA-KQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGL 219 (290)
Q Consensus 142 ~~a~~~v~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (290)
.+-.+.++++|++++. .+ +++++ ++.-+.+.|.+.+........- .++.. .+. ..+ |.--.+.++-..
T Consensus 25 t~l~~gVlQEki~T~~y~~--~~~rF~~~~fL~~~q~l~~~~~s~~~l~---~~k~~--~~~-~ap--l~~y~~is~tn~ 94 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGE--DGERFEHSLFLVFCQRLVALLVSYAMLK---WWKKE--LSG-VAP--LYKYSLISFTNT 94 (327)
T ss_pred HHHHHHHHhcceeecccCc--ccccccccHHHHHHHHHHHHHHHHHHHh---ccccc--CCC-CCc--hhHHhHHHHHhh
Confidence 3344667788876531 11 11222 4444566777766655532221 22211 111 111 223333444444
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 220 AISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
.-..+.+-++|+.|=-+..+.-.-|.+..++++.++.+.+.+...++-..++-+|+.++...+..+
T Consensus 95 ~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 95 LSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred cchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 445556679999998889999999999999999999999999999999999999999988775554
No 101
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.11 E-value=0.39 Score=38.89 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeec
Q 022936 222 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 283 (290)
Q Consensus 222 ~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~ 283 (290)
+|.-..++++++|+.++-...-+..+.-++++.+++|++.-..++...+.+-|+++.++...
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 55555689999999999999999999999999999999999999999999999998776443
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=0.21 Score=43.49 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 022936 129 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 208 (290)
Q Consensus 129 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
+..|..+++.|++..+...+..||-+.+....++. .++ ..++....+. |
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r--------------------------a~~----gg~~yl~~~~-W 67 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR--------------------------AGE----GGYGYLKEPL-W 67 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhhhccc--------------------------ccC----CCcchhhhHH-H
Confidence 45688888888887777777777754421110000 000 0111111222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeecccc
Q 022936 209 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
...++.-..|=+.||. +-...+++-.+-++.+.-+.+.+++..+++|+++....+|++++++|....-....+|+
T Consensus 68 w~G~ltm~vGei~NFa---AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFA---AYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHHHHHhHhhHH---HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 3333344444455654 34455666777778888999999999999999999999999999999877655444443
No 103
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.95 E-value=8.8 Score=29.90 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHcCccccCccc--HHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH-HHhhHHHH
Q 022936 14 FDAGISLMVYQNFISVVTVTILSFLGVISTEPLT--WRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTV-LKNVTNVI 90 (290)
Q Consensus 14 ~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~ 90 (290)
...|..-.+.-+.++..++..+... +.+.++.. ++...-....|++.+.....+......+.++..++ ..+-.-+.
T Consensus 31 ~~spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~ 109 (150)
T COG3238 31 LGSPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIM 109 (150)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence 3448888888888887766655444 22333333 22222233445555666666666777777665554 33556666
Q ss_pred HHHHHHHHh----CccCChHHHHHHHHHHHhhhhh
Q 022936 91 TAVGEMYLF----NKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 91 ~~ll~~~~~----~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
-+++..+=. ++++++.++.++++.++|+.+.
T Consensus 110 glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 110 GLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 677665543 3678999999999999995554
No 104
>PRK02237 hypothetical protein; Provisional
Probab=78.09 E-value=4.6 Score=29.37 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=39.5
Q ss_pred hhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 236 TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 236 ~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
.++.++-+=.+.+.+.++.+-++++|...++|.+++++|+.+..+.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 35666777788888999999999999999999999999997765544
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=75.96 E-value=5 Score=29.13 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=39.8
Q ss_pred hhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 236 TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 236 ~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
.++.++-+=.+.+.+.++.+-+++++...++|..++++|+.+..+.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 35666777788899999999999999999999999999998776544
No 106
>PRK02237 hypothetical protein; Provisional
Probab=75.58 E-value=7 Score=28.44 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 84 KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 84 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
-.-..+...+..+.+.|+||++.++.+..+++.|+.++...
T Consensus 66 GGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 66 GGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 34566777788999999999999999999999999887543
No 107
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=75.57 E-value=6.4 Score=28.57 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 84 KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 84 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
-.-..+...+..+.+-|+||++.++.+..+++.|+.++...
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 34567778889999999999999999999999999987653
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=75.41 E-value=41 Score=29.22 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 228 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 228 ~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
++..++++...+.--.-.++.-+.+..+++.+++..||+|+..+..|.+....
T Consensus 106 gL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 106 GLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 77788888888877777889999999999999999999999999999876543
No 109
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.41 E-value=68 Score=28.25 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC-hhHHHHHHHHhHHHHHHHHHHHhcchhhhhcCCCCcc--hhHHH
Q 022936 133 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRL--PSFWL 209 (290)
Q Consensus 133 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 209 (290)
..-++.-+++...-.+..|..+.+ .+++ ...++.+|+..+.......... ...+++..+. ..-|.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~-------y~f~~~l~l~~~Q~l~s~~~v~~lk~~-----~lv~~~~l~~~~~kk~~ 81 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSS-------YNFPMGLLLMLLQSLASVLVVLVLKRL-----GLVNFRPLDLRTAKKWF 81 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHHHHHHHHh-----ceeecCCcChHHHHHHc
Confidence 333444444444445566666552 2333 2344558887776655543321 1112222111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhhe
Q 022936 210 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~ 280 (290)
= ..+.-+..-+......++.+-....+.-++.++.+.+....+++.+++...++.......|...+..
T Consensus 82 P---~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 82 P---VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred c---HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 0 1111122233445688999999999999999999999999999999999999999999888776543
No 110
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=72.17 E-value=73 Score=28.47 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=123.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hhHHHHHHHHHHHHhC-------ccCChHHHHHHHHHHH
Q 022936 45 PLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLK-NVTNVITAVGEMYLFN-------KRHDNRVWAALFLMII 116 (290)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ll~~~~~~-------e~~~~~~~~~~~l~~~ 116 (290)
..+.+.+......+++.-.....+-.+.+|+..|.-+-+. .++-++=.++-.++.+ ++-....+.++++.++
T Consensus 67 ~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~Li 146 (344)
T PF06379_consen 67 ATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLI 146 (344)
T ss_pred hCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHH
Confidence 3455667777788888888888888999998777654332 3333333333333332 2335578899999999
Q ss_pred hhhhheec----c-------cccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCChhHH----HHHHHHhHH
Q 022936 117 SAISGGIT----D-------LSFH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSM----VLLNNSLSL 180 (290)
Q Consensus 117 G~~l~~~~----~-------~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 180 (290)
|+++.... | .+++ ..|.+.++.|.++.|.++.-...-.+..+. ......+++.. .......+.
T Consensus 147 GIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~-a~a~G~~~l~~~l~~~vvv~~GGf 225 (344)
T PF06379_consen 147 GIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEA-AVAAGVNPLYANLPVYVVVLWGGF 225 (344)
T ss_pred HHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHcCCCcHHHhCchhhhhhhhHH
Confidence 99998542 1 1233 379999999999999988865542111110 00011122110 011122333
Q ss_pred HHHHHHHHHh--c--chhhhhcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHhhcC----cchhhhhhhhhhHHHHH
Q 022936 181 PLGVLLVIVF--N--EVDYLSRTPLLRLP--SFWLVMTLSGFLGLAISFTSMWFLHQTG----ATTYSLVGSLNKIPLSV 250 (290)
Q Consensus 181 ~~~~~~~~~~--~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~si~~~~~~v~~~i 250 (290)
..-+.+++.. . ++..-.++....++ .-.....+.|+.-+...+.--++-.+.+ .....+...+..+++.+
T Consensus 226 ~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snv 305 (344)
T PF06379_consen 226 ITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNV 305 (344)
T ss_pred HHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Confidence 3334444321 1 11100011111111 1122233344443332222113444444 45667777777888888
Q ss_pred HhHhhccCC------CCchhHHHHHHHHhhhhhhhe
Q 022936 251 AGILLFKVP------TSLENSASIFFGLLAGVFFAR 280 (290)
Q Consensus 251 ~~~~~~~e~------~~~~~~~G~~lil~g~~l~~~ 280 (290)
.|.. ++|- .-..-++|+++++.++.+..+
T Consensus 306 wGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 306 WGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 8875 4442 224457888888887766543
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.91 E-value=14 Score=26.67 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 85 NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 85 ~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
....+......+.+-|.+|++..+.+.++++.|+.++...
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 4556677788888999999999999999999998877554
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=55.35 E-value=53 Score=23.89 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHh-hHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 61 FVGMLITSMFSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 61 ~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
|+.+.--+-.+.+.-+.+.--+++= .+-.....++.+++||++++....+-...+.++.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 4555444555555556665555552 222333455678899999999999888776666543
No 113
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=55.06 E-value=1.8e+02 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.7
Q ss_pred hhHHHHHHHHhhhhhhheeecccc
Q 022936 263 ENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 263 ~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
....|.++...|..+|.+.+++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788888899888887655544
No 114
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.75 E-value=13 Score=32.01 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=44.9
Q ss_pred HHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhh
Q 022936 226 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 278 (290)
Q Consensus 226 ~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~ 278 (290)
+.+++..+...+-+--.+..++++++++++++++-+..-..++.+++.|..+-
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 35888888888888888889999999999999999998888888888885543
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=47.51 E-value=24 Score=25.66 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=23.3
Q ss_pred HHHhHhhccCCCCchhHHHHHHHHhhhh
Q 022936 249 SVAGILLFKVPTSLENSASIFFGLLAGV 276 (290)
Q Consensus 249 ~i~~~~~~~e~~~~~~~~G~~lil~g~~ 276 (290)
+..++++++|++++.+..|.++++.++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4467788999999999999999977654
No 116
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=44.49 E-value=18 Score=31.30 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhc-CcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheeeccc
Q 022936 217 LGLAISFTSMWFLHQT-GATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 217 ~~~~~~~~~~~~i~~~-~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
..+..+.+.+.+.+.. +-.-+-+.-.-.++..+++++++.+.+-+..|+...+++-+|++..+..+.++
T Consensus 73 mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 73 MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred eeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 3355566666666643 33334444566688999999999999999999999999999999998876665
No 117
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=43.08 E-value=17 Score=26.35 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 65 LITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 65 ~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
..+++..+++.+.+.+.-+ .+++-.|+.+.+..+..|.+.++.+.+..+.+.|..+.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3455667777777766544 46788899999977444457888889999999888764
No 118
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=39.94 E-value=3.1e+02 Score=25.48 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhhhhhhheeeccc
Q 022936 263 ENSASIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 263 ~~~~G~~lil~g~~l~~~~~~~~ 285 (290)
....|.++...|...|.+.|+++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888889998887644443
No 119
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=39.04 E-value=4.2e+02 Score=26.73 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 81 TVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 81 ~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
.++..++|.-.+.++.....+|++...+.+.+..++|...+
T Consensus 14 ~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 14 VIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45677889888888888777776555566666666676654
No 120
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=36.75 E-value=1.5e+02 Score=20.98 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHHhhcCcchhhhhhhhhhHHHHHHhHhh--ccCCCCc--hhHHHHHHHHhhhhhhheeecccc
Q 022936 226 MWFLHQTGATTYSLVGSLNKIPLSVAGILL--FKVPTSL--ENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 226 ~~~i~~~~~~~~si~~~~~~v~~~i~~~~~--~~e~~~~--~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
...+|++.-...-.+-.+.-+..+++|.+. +....+. .-|+|...-+.+.-++....+|++
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~ 86 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSK 86 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhh
Confidence 347777754444444444445555554442 2222233 347888888888878665444443
No 121
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=36.46 E-value=25 Score=23.30 Aligned_cols=17 Identities=18% Similarity=-0.023 Sum_probs=8.3
Q ss_pred hhhhhhheeecccccCC
Q 022936 273 LAGVFFARAKMWERSQS 289 (290)
Q Consensus 273 ~g~~l~~~~~~~~~~~~ 289 (290)
++.+..-+.|.|++|++
T Consensus 47 lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 47 LTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHhHhhhhhhHhhhH
Confidence 33333345666665543
No 122
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.46 E-value=3e+02 Score=24.04 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=39.9
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc
Q 022936 76 NVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD 125 (290)
Q Consensus 76 ~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~ 125 (290)
.+..+.++...--..|.+++++++.+.++..-.-+..+++.|..+=.+++
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 45555556566667889999999999999988888889999999876665
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=49 Score=23.99 Aligned_cols=46 Identities=9% Similarity=-0.107 Sum_probs=37.0
Q ss_pred hhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 237 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 237 ~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
++-++-+=.+.+.+..+++=+.+++...++|.++.+.|+.+....+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4556666677888888888889999999999999999977665543
No 124
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=33.40 E-value=2.2e+02 Score=25.25 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 62 VGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 62 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
.+.-.+.+.=++.++.=+-++..--.-+.+.+++.++.+++.+-..|.+..++..|+..-
T Consensus 254 F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 254 FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 334444444555555444444445556677788888899999999999999999998876
No 125
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=28.64 E-value=53 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhhheeecc
Q 022936 267 SIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 267 G~~lil~g~~l~~~~~~~ 284 (290)
|..+++++.+++-|.|++
T Consensus 22 ~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHHHhheEEecc
Confidence 344455666666554443
No 126
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=27.94 E-value=2.6e+02 Score=20.90 Aligned_cols=41 Identities=17% Similarity=-0.088 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCccccCcccHHHHHHHHHH
Q 022936 17 GISLMVYQNFISVVTVTILSFLGVISTEPLTWRLIKVWLPV 57 (290)
Q Consensus 17 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (290)
|..+...=...+.+.+.-..+.+..+.++.++.++++....
T Consensus 38 P~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (141)
T PF07331_consen 38 PRLLGILLLILSLLLLVRSFRGPDEDEEPFDRVDWKRVLLV 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHH
Confidence 55554444444444332222221222334455555554333
No 127
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=27.02 E-value=3.2e+02 Score=21.68 Aligned_cols=91 Identities=8% Similarity=0.058 Sum_probs=56.8
Q ss_pred HHHHHhhhhhcccchhHHHHHHhhHHH--HHHHHHHHHhCccCChHHHHHHHH-------HHHhhhhheecccccchhhH
Q 022936 63 GMLITSMFSLKYINVAMVTVLKNVTNV--ITAVGEMYLFNKRHDNRVWAALFL-------MIISAISGGITDLSFHAVGY 133 (290)
Q Consensus 63 ~~~~~~~~al~~~~~~~~~~i~~~~pi--~~~ll~~~~~~e~~~~~~~~~~~l-------~~~G~~l~~~~~~~~~~~G~ 133 (290)
..+..+++-+.-.+...-.++.....+ .+=..+..+.|..|+..+.+++.+ .+.|+.+.+..+.+.-....
T Consensus 55 ~~~~v~~~iL~pl~l~yLRtiafIlVIAv~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv 134 (193)
T COG4657 55 CAWLVDTFILIPLGLEYLRTIAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSV 134 (193)
T ss_pred HHHHHHhHhhhccChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHH
Confidence 344445555555555555554443322 333456666788899999988775 56777777665544444677
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022936 134 AWQIINCFLTASYSLTLRRV 153 (290)
Q Consensus 134 ~~~l~s~~~~a~~~v~~~~~ 153 (290)
..++.+++.+++-.+...-+
T Consensus 135 ~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 135 VYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHHhhhHhhHHHHHHHHHHH
Confidence 77888888887776654433
No 128
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.41 E-value=2.8e+02 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.0
Q ss_pred CCchhHHHHHHHHhhhhhhheee
Q 022936 260 TSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 260 ~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
++..|++++.++++|+++..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999987765543
No 129
>PLN02776 prenyltransferase
Probab=25.19 E-value=5e+02 Score=23.31 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=25.7
Q ss_pred HHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCch
Q 022936 228 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLE 263 (290)
Q Consensus 228 ~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~ 263 (290)
-.|+.++..+ +++.+--....++||.--.+++++.
T Consensus 118 ~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg~~~~~ 152 (341)
T PLN02776 118 PLKQIHPANT-WVGAVVGAIPPLMGWAAASGQLDAG 152 (341)
T ss_pred hHccCCchhH-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 5888888875 7777766677788888777777653
No 130
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.05 E-value=53 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhheeecccc
Q 022936 267 SIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 267 G~~lil~g~~l~~~~~~~~~ 286 (290)
-..++++|++.|.+++++++
T Consensus 18 ~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHhCCCcch
Confidence 34677889999988765554
No 131
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.80 E-value=1.1e+02 Score=16.57 Aligned_cols=14 Identities=21% Similarity=0.002 Sum_probs=7.5
Q ss_pred CCchhHHHHHHHHh
Q 022936 260 TSLENSASIFFGLL 273 (290)
Q Consensus 260 ~~~~~~~G~~lil~ 273 (290)
-+...++|++++..
T Consensus 10 ~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 10 NSLLLLLGLLLLGL 23 (34)
T ss_pred cHHHHHHHHHHHHH
Confidence 34556677744433
No 132
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.54 E-value=69 Score=19.47 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=12.3
Q ss_pred HHHHHHhhhhhhheeeccc
Q 022936 267 SIFFGLLAGVFFARAKMWE 285 (290)
Q Consensus 267 G~~lil~g~~l~~~~~~~~ 285 (290)
-..++++|++.+.++++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 3445667888888766543
No 133
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.05 E-value=70 Score=18.54 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhheeeccccc
Q 022936 265 SASIFFGLLAGVFFARAKMWERS 287 (290)
Q Consensus 265 ~~G~~lil~g~~l~~~~~~~~~~ 287 (290)
.+|++++.+-++.|.-..+|.++
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHccccc
Confidence 46777777777777654444443
No 134
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.88 E-value=2.9e+02 Score=19.65 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhh
Q 022936 87 TNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 121 (290)
Q Consensus 87 ~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~ 121 (290)
.|+..++... +-|.+.-+.+|+-.+...+|+++-
T Consensus 15 ~ii~~~lVq~-IkkT~~v~~K~iPlIs~viGilLG 48 (93)
T PF06946_consen 15 SIITPALVQA-IKKTKVVPNKWIPLISVVIGILLG 48 (93)
T ss_pred HHHHHHHHHH-HHHhccCCcchhhHHHHHHHHHHH
Confidence 3444444443 344444466777777777777763
No 135
>PF15102 TMEM154: TMEM154 protein family
Probab=20.91 E-value=82 Score=24.39 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhhhheeecccc
Q 022936 265 SASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 265 ~~G~~lil~g~~l~~~~~~~~~ 286 (290)
+++.++++..++++.+.|||+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3444555555666655555443
No 136
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=20.75 E-value=3.9e+02 Score=20.43 Aligned_cols=71 Identities=14% Similarity=0.308 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHhhcCcchhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHH-HHhhhhhhheeec
Q 022936 206 SFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF-GLLAGVFFARAKM 283 (290)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~l-il~g~~l~~~~~~ 283 (290)
.++.......+.+....|.. .+..|+.++++.++.+. ....+.+.+++. + .|+.+ -+.|.++....++
T Consensus 31 ~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~ 100 (140)
T PF04306_consen 31 WFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGA---IIGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRG 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhC
Confidence 44555666777777887765 47899999999888753 345555555443 1 15444 4456666665555
Q ss_pred ccc
Q 022936 284 WER 286 (290)
Q Consensus 284 ~~~ 286 (290)
|+.
T Consensus 101 ~~~ 103 (140)
T PF04306_consen 101 KDF 103 (140)
T ss_pred CCH
Confidence 543
Done!