Query 022936
Match_columns 290
No_of_seqs 121 out of 1305
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.3E-07 4.5E-12 71.6 6.0 67 216-282 37-105 (137)
2 3b5d_A Multidrug transporter E 98.5 2.4E-06 8.3E-11 62.3 11.4 71 55-125 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 9.5E-07 3.3E-11 66.9 6.1 70 55-124 34-104 (137)
4 3b5d_A Multidrug transporter E 98.2 3.6E-06 1.2E-10 61.4 7.8 57 226-282 48-105 (110)
5 2l2t_A Receptor tyrosine-prote 29.8 31 0.001 19.9 1.9 10 278-287 32-41 (44)
6 3l1l_A Arginine/agmatine antip 24.0 1.7E+02 0.0059 25.2 6.8 24 263-286 409-432 (445)
7 3aqp_A Probable secdf protein- 5.7 1.2E+03 0.04 22.1 6.8 35 241-276 304-338 (741)
8 3arc_T Photosystem II reaction 4.9 4.8E+02 0.016 13.7 2.3 13 93-105 17-29 (32)
9 3l1l_A Arginine/agmatine antip 4.0 1.6E+03 0.056 18.7 9.7 112 36-147 312-428 (445)
10 2hac_A T-cell surface glycopro 3.6 2.9E+02 0.0099 14.7 0.4 19 89-107 14-32 (33)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.52 E-value=1.3e-07 Score=71.63 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=45.2
Q ss_pred HHHHHHHHHH-HHHHhhcCcchhhhh-hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 216 FLGLAISFTS-MWFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 216 ~~~~~~~~~~-~~~i~~~~~~~~si~-~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
++++..++.. .+++|+.+++++..+ ..+.|+.++++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444433 468999999988777 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.46 E-value=2.4e-06 Score=62.27 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheecc
Q 022936 55 LPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD 125 (290)
Q Consensus 55 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~ 125 (290)
....+++....++..+++++.|.+.+..+ ..+.|+++.+++++++||++++.++.++.+++.|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33345577888999999999999999888 899999999999999999999999999999999999886543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.31 E-value=9.5e-07 Score=66.86 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhhHHHHHHHHHHHHhCccCChHHHHHHHHHHHhhhhheec
Q 022936 55 LPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (290)
Q Consensus 55 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~ 124 (290)
+...+++.+..++.+++++++|++.+..+ .++.|+++.+++++++||++++.++.++.++++|+.+....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33345578899999999999999988888 89999999999999999999999999999999999988643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.24 E-value=3.6e-06 Score=61.38 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=51.3
Q ss_pred HHHHhhcCcchhhhh-hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhhhhheee
Q 022936 226 MWFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 282 (290)
Q Consensus 226 ~~~i~~~~~~~~si~-~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~l~~~~~ 282 (290)
.+++|+.+..++..+ ..+.|+.++++|+++|||++|+.+++|+++++.|++..+..+
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 358999988888666 899999999999999999999999999999999999987643
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.77 E-value=31 Score=19.95 Aligned_cols=10 Identities=0% Similarity=-0.217 Sum_probs=3.8
Q ss_pred hheeeccccc
Q 022936 278 FARAKMWERS 287 (290)
Q Consensus 278 ~~~~~~~~~~ 287 (290)
+-++++|+++
T Consensus 32 ~~~RRRr~~~ 41 (44)
T 2l2t_A 32 VYVRRKSIKK 41 (44)
T ss_dssp HHHHTTCSSC
T ss_pred HHhhhhhhhh
Confidence 3333333333
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.01 E-value=1.7e+02 Score=25.24 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhhhhhhheeecccc
Q 022936 263 ENSASIFFGLLAGVFFARAKMWER 286 (290)
Q Consensus 263 ~~~~G~~lil~g~~l~~~~~~~~~ 286 (290)
....|...+++|..+|.+.++|++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445678888889888876544443
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=5.72 E-value=1.2e+03 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhhh
Q 022936 241 GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV 276 (290)
Q Consensus 241 ~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~~ 276 (290)
...-.+...+....++|.++|....+|..+. +|+.
T Consensus 304 ~l~~~i~~~~~~l~l~g~~l~l~~i~glil~-iGi~ 338 (741)
T 3aqp_A 304 GLLYTSALILGLLSGLGATLTLPGIAGLVLT-LGAA 338 (741)
T ss_dssp HHHHHHHHHHHHHHHHCCBCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHH
Confidence 3333444444445567999999998887776 5543
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.91 E-value=4.8e+02 Score=13.73 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=8.4
Q ss_pred HHHHHHhCccCCh
Q 022936 93 VGEMYLFNKRHDN 105 (290)
Q Consensus 93 ll~~~~~~e~~~~ 105 (290)
++-.+++||+|..
T Consensus 17 iFFAI~FRePPri 29 (32)
T 3arc_T 17 FFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHhhhhcCCCCC
Confidence 3445678887754
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=3.98 E-value=1.6e+03 Score=18.66 Aligned_cols=112 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHcCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHH-----HHH
Q 022936 36 SFLGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRV-----WAA 110 (290)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~-----~~~ 110 (290)
..+++..+++.+..........+.+...........-.+........+.....-....++.+.+|+|-.+.+ +.+
T Consensus 312 ~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~r~~~~~~~~ 391 (445)
T 3l1l_A 312 PIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVT 391 (445)
T ss_dssp GGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGGGCTTTHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhHHHH
Q ss_pred HHHHHHhhhhheecccccchhhHHHHHHHHHHHHHHH
Q 022936 111 LFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS 147 (290)
Q Consensus 111 ~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~ 147 (290)
.+..+..+.+....+......|..+.+.+...|..+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 392 TIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=3.61 E-value=2.9e+02 Score=14.68 Aligned_cols=19 Identities=0% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCccCChHH
Q 022936 89 VITAVGEMYLFNKRHDNRV 107 (290)
Q Consensus 89 i~~~ll~~~~~~e~~~~~~ 107 (290)
+.-.++..++.|||+.+.+
T Consensus 14 iYgii~T~Ly~R~K~~~~~ 32 (33)
T 2hac_A 14 IYGVILTALFLRVKFSRSA 32 (33)
T ss_dssp HHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHhhccC
Done!