Query 022936
Match_columns 290
No_of_seqs 121 out of 1305
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 13:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022936.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022936hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.8 81 0.0059 14.3 2.9 17 131-147 3-19 (27)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 8.5 30 0.0022 21.7 -0.4 16 271-286 31-46 (91)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 6.0 1.2E+02 0.0088 18.8 1.8 19 266-284 37-55 (100)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 5.8 6E+02 0.043 19.8 22.7 51 95-147 246-298 (383)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.1 4.8E+02 0.035 17.9 5.7 41 235-275 66-106 (199)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.1 1.9E+02 0.014 16.1 1.6 12 273-284 52-63 (64)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.4 2.5E+02 0.018 17.5 1.8 10 271-280 48-57 (107)
8 d2h5na1 a.287.1.2 (A:1-132) Hy 2.5 6.7E+02 0.048 15.1 3.1 36 104-143 82-117 (132)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1E+03 0.073 17.0 7.9 54 53-110 4-57 (248)
10 d1gl4a1 d.22.1.2 (A:399-631) D 2.0 3E+02 0.022 20.1 0.9 33 71-104 44-76 (233)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.76 E-value=81 Score=14.31 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 022936 131 VGYAWQIINCFLTASYS 147 (290)
Q Consensus 131 ~G~~~~l~s~~~~a~~~ 147 (290)
.|.+.+-++.+++|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 56777777778777764
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.54 E-value=30 Score=21.66 Aligned_cols=16 Identities=6% Similarity=-0.309 Sum_probs=8.5
Q ss_pred HHhhhhhhheeecccc
Q 022936 271 GLLAGVFFARAKMWER 286 (290)
Q Consensus 271 il~g~~l~~~~~~~~~ 286 (290)
...|...|...|.|++
T Consensus 31 ~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 31 PAILMAVGFAWKYRAS 46 (91)
T ss_dssp HHHHHHHTTTTTTTTS
T ss_pred HHHHHHHhhheeeecc
Confidence 4455556665555544
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.98 E-value=1.2e+02 Score=18.84 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhhhheeecc
Q 022936 266 ASIFFGLLAGVFFARAKMW 284 (290)
Q Consensus 266 ~G~~lil~g~~l~~~~~~~ 284 (290)
.++.+++.|...|...|.|
T Consensus 37 ~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3344445555555544433
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.84 E-value=6e+02 Score=19.77 Aligned_cols=51 Identities=2% Similarity=-0.263 Sum_probs=23.9
Q ss_pred HHHHhCccCChHHHHHHHHHHHhhhhheecccccchh-hHHHHHHHH-HHHHHHH
Q 022936 95 EMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAV-GYAWQIINC-FLTASYS 147 (290)
Q Consensus 95 ~~~~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~-G~~~~l~s~-~~~a~~~ 147 (290)
...+.++|++......- .+.|.+-++....-.+.. ..+....+. +++-.+.
T Consensus 246 ~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~ 298 (383)
T d1u7ga_ 246 GEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVT 298 (383)
T ss_dssp HHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHH
Confidence 33346677877665543 334555544332223333 355554444 3343333
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=4.8e+02 Score=17.88 Aligned_cols=41 Identities=7% Similarity=-0.071 Sum_probs=24.7
Q ss_pred chhhhhhhhhhHHHHHHhHhhccCCCCchhHHHHHHHHhhh
Q 022936 235 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 275 (290)
Q Consensus 235 ~~~si~~~~~~v~~~i~~~~~~~e~~~~~~~~G~~lil~g~ 275 (290)
.........-.+........++|.+++.....+..+.+...
T Consensus 66 ~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 66 TLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred hheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Confidence 33334444444555555566778888888877777764443
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.14 E-value=1.9e+02 Score=16.09 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=5.2
Q ss_pred hhhhhhheeecc
Q 022936 273 LAGVFFARAKMW 284 (290)
Q Consensus 273 ~g~~l~~~~~~~ 284 (290)
++..++-+.|+|
T Consensus 52 ~~~~~~~~f~rk 63 (64)
T d2iuba2 52 IAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHTTTTSC
T ss_pred HHHHHHHHHhcc
Confidence 444444444433
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.40 E-value=2.5e+02 Score=17.52 Aligned_cols=10 Identities=0% Similarity=-0.250 Sum_probs=4.5
Q ss_pred HHhhhhhhhe
Q 022936 271 GLLAGVFFAR 280 (290)
Q Consensus 271 il~g~~l~~~ 280 (290)
.+.|...|..
T Consensus 48 ~V~~~~~~~~ 57 (107)
T d3ehbb2 48 FVCLLLLICI 57 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 8
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.50 E-value=6.7e+02 Score=15.09 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHhhhhheecccccchhhHHHHHHHHHHH
Q 022936 104 DNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLT 143 (290)
Q Consensus 104 ~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~ 143 (290)
.+.+..+ ..+|++..+-+|...+ .=.+|.+++.+|.
T Consensus 82 erkkyva---sylgvimasdgdiddn-elalwtlistlcg 117 (132)
T d2h5na1 82 ERKKYVA---SYLGVIMASDGDIDDN-ELALWTLISTLCG 117 (132)
T ss_dssp HHHHHHH---HHHHHHSCBTTBCCHH-HHHHHHHHHHHHT
T ss_pred HHHHHHH---HHhhheeccCCCCCcc-HhHHHHHHHHHhC
Confidence 4445444 6688888877766544 3456777777763
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=1e+03 Score=17.03 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhhHHHHHHHHHHHHhCccCChHHHHH
Q 022936 53 VWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAA 110 (290)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~~~~~~~ 110 (290)
++..++++.++..+.-......-+...+ ...-+.+.++.++++.+|.-+.|++-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhh
Confidence 3455566555544444333333333322 23445667777888888776666654
No 10
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.03 E-value=3e+02 Score=20.11 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=0.0
Q ss_pred hhcccchhHHHHHHhhHHHHHHHHHHHHhCccCC
Q 022936 71 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHD 104 (290)
Q Consensus 71 al~~~~~~~~~~i~~~~pi~~~ll~~~~~~e~~~ 104 (290)
+++.+|.+....++.+.|+...+ .|+|-+|...
T Consensus 44 aIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~~~ 76 (233)
T d1gl4a1 44 AISTIPETVGYSLLPLAPIGGII-GWMFAVEQDG 76 (233)
T ss_dssp EEESCCHHHHGGGTTCTHHHHHH-HHHTCEECTT
T ss_pred EccCCChhHhhhhhhhhhhcCce-eeeEEeecCC
Done!