Your job contains 1 sequence.
>022938
MLSLSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAA
KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF
SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN
KYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR
VKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022938
(289 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 738 4.6e-73 1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 219 1.6e-17 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 200 2.0e-14 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 194 2.5e-13 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 191 6.8e-13 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 191 6.8e-13 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 190 9.1e-13 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 185 4.3e-12 1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 174 1.0e-10 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 151 1.6e-10 1
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 170 3.3e-10 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 170 3.5e-10 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 167 7.3e-10 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 166 9.2e-10 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 143 1.3e-09 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 143 1.3e-09 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 163 2.2e-09 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 160 3.9e-09 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 155 9.4e-09 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 135 1.0e-08 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 162 1.3e-08 1
TAIR|locus:2010336 - symbol:AT1G12800 species:3702 "Arabi... 140 9.8e-08 2
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 125 1.3e-07 1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 152 1.8e-07 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 143 6.6e-07 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 142 8.4e-07 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 134 2.9e-06 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 137 3.2e-06 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 141 3.3e-06 1
GENEDB_PFALCIPARUM|MAL8P1.101 - symbol:MAL8P1.101 "hypoth... 131 2.9e-05 1
UNIPROTKB|C0H4U1 - symbol:MAL8P1.101 "RNA binding protein... 131 2.9e-05 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 127 4.2e-05 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 131 4.9e-05 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 125 7.1e-05 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 125 7.2e-05 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 125 7.2e-05 1
TIGR_CMR|CPS_4965 - symbol:CPS_4965 "putative transcripti... 120 0.00031 1
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 119 0.00038 1
UNIPROTKB|Q9KNL6 - symbol:VC_2716 "Putative uncharacteriz... 119 0.00038 1
TIGR_CMR|VC_2716 - symbol:VC_2716 "conserved hypothetical... 119 0.00038 1
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 121 0.00057 1
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 118 0.00084 1
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 118 0.00084 1
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 144/211 (68%), Positives = 172/211 (81%)
Query: 68 NPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP 127
N +L D+SD ++ + +DWK A+AY +SG +EG++QGFNGGGLL+RF SLVGFLP
Sbjct: 79 NSLLRDTSD----EASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLP 134
Query: 128 FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN 187
+PQ+SPS SCKEPQKSIHEIAK L GS + VKV+QA+EE +KL+ SEK A+W KYS VN
Sbjct: 135 YPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVN 194
Query: 188 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 242
V D+F GR DYGAFIHLRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV
Sbjct: 195 VGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVI 254
Query: 243 VIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
V ID+EKSRITLSIKQLE+DPLLETL+KVI
Sbjct: 255 VTNIDKEKSRITLSIKQLEDDPLLETLDKVI 285
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 219 (82.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 62/198 (31%), Positives = 102/198 (51%)
Query: 72 DDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
DDS + R Q + W+ R + I + K+ G N GGL+ L GF+PF Q+
Sbjct: 161 DDSLLLSLRNIQYELA--WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQI 218
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
S + +E L I +K ++ +EE KLV S + AV + +++ + +
Sbjct: 219 SSKAAAEE-----------LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSV 266
Query: 192 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+G + YGAFI + G+ GL+HVS++S D + DI +L GD ++V ++
Sbjct: 267 VLGVVQSLKPYGAFIDI---GGI---NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSH 320
Query: 247 DREKSRITLSIKQLEEDP 264
DR++ R++LS K+LE P
Sbjct: 321 DRDRGRVSLSTKKLEPTP 338
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 200 (75.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 66/222 (29%), Positives = 106/222 (47%)
Query: 67 VNPILDDSSDANNRQSQSRSSAD----WKAA-RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A W +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
N GDE+ VKV+K DRE++R++L +KQL EDP LE + K P+
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE-ISKRYPE 276
Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 43/132 (32%), Positives = 70/132 (53%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 314 KNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIKS 373
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERER 428
Query: 253 ITLSIKQLEEDP 264
I+L +KQ E+DP
Sbjct: 429 ISLGVKQTEDDP 440
Score = 158 (60.7 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 56/192 (29%), Positives = 90/192 (46%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSR 252
DYG F+ + +G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE--EGV---EGLVHVSEMDWTN-KNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 194 (73.4 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 61/210 (29%), Positives = 103/210 (49%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETV-TGVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/187 (28%), Positives = 92/187 (49%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G ++ V V+ +EE +++ K W +++ N D G+ D+G
Sbjct: 324 ----VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGV 433
Query: 258 KQLEEDP 264
KQL EDP
Sbjct: 434 KQLAEDP 440
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 191 (72.3 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 67/242 (27%), Positives = 111/242 (45%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAA-RAYKESGFI 102
P +F A ++ + V+ LD D SR A W +AY+E+ +
Sbjct: 49 PAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATV 108
Query: 103 YEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSI 155
G I G GG V + FLP P +H KE + + ++ + +
Sbjct: 109 I-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVV 167
Query: 156 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTG 214
+S + + +E E+D + V+ I DYGAF+ L DGL H+T
Sbjct: 168 VSRRAVIESESSV-----ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHIT- 221
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
+++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + + K P
Sbjct: 222 -----DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRYP 275
Query: 275 QG 276
+G
Sbjct: 276 EG 277
Score = 158 (60.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L +G + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---EG--GIDGLVHLSDISWNVPGEEAVREF-KKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDP 264
KQ+E DP
Sbjct: 434 KQMENDP 440
Score = 135 (52.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SS + + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + + ++ K + W + R GR
Sbjct: 234 IVN------VGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSR 252
DYG F+ + +G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE--EGV---EGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 55/191 (28%), Positives = 81/191 (42%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP-QKSIHEIA 148
W++ + G GKI+ G+ F L G + S P ++++ E
Sbjct: 354 WQSFAEAQAKGDKVTGKIKSITDFGI---FIGLEGGIDGLVHLSDISWNVPGEEAVREFK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN----VEDIFVGRDY-GAFIHL 203
KG S + + V E + + ++ +N Y S V D GA I L
Sbjct: 411 KGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIEL 470
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QL 260
DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSIK +
Sbjct: 471 E--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEA 525
Query: 261 EEDPLLETLEK 271
EE ++ TL K
Sbjct: 526 EEQEVMATLNK 536
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 191 (72.3 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 67/242 (27%), Positives = 111/242 (45%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAA-RAYKESGFI 102
P +F A ++ + V+ LD D SR A W +AY+E+ +
Sbjct: 49 PAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATV 108
Query: 103 YEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSI 155
G I G GG V + FLP P +H KE + + ++ + +
Sbjct: 109 I-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVV 167
Query: 156 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTG 214
+S + + +E E+D + V+ I DYGAF+ L DGL H+T
Sbjct: 168 VSRRAVIESESSV-----ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHIT- 221
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
+++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + + K P
Sbjct: 222 -----DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRYP 275
Query: 275 QG 276
+G
Sbjct: 276 EG 277
Score = 158 (60.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L +G + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---EG--GIDGLVHLSDISWNVPGEEAVREF-KKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDP 264
KQ+E DP
Sbjct: 434 KQMENDP 440
Score = 135 (52.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SS + + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + + ++ K + W + R GR
Sbjct: 234 IVN------VGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSR 252
DYG F+ + +G+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE--EGV---EGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 55/191 (28%), Positives = 81/191 (42%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP-QKSIHEIA 148
W++ + G GKI+ G+ F L G + S P ++++ E
Sbjct: 354 WQSFAEAQAKGDKVTGKIKSITDFGI---FIGLEGGIDGLVHLSDISWNVPGEEAVREFK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN----VEDIFVGRDY-GAFIHL 203
KG S + + V E + + ++ +N Y S V D GA I L
Sbjct: 411 KGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIEL 470
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QL 260
DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSIK +
Sbjct: 471 E--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEA 525
Query: 261 EEDPLLETLEK 271
EE ++ TL K
Sbjct: 526 EEQEVMATLNK 536
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 190 (71.9 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 62/211 (29%), Positives = 103/211 (48%)
Query: 79 NRQSQSRSSADWKAA-RAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSC 137
+R+ R A W+ +AY+E + G I G GG V + FLP +
Sbjct: 85 SREKAKRHEA-WQVLEKAYEEKETVI-GVINGKVKGGFTVEVSDIRAFLPGSLVDV---- 138
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRV 186
+ + + A L G + KVI+ +++ +V S E+D + +
Sbjct: 139 ----RPVRDTAH-LEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAERDELLESLAEGQ 193
Query: 187 NVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K
Sbjct: 194 EVKGIVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLK 247
Query: 246 IDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + P+G
Sbjct: 248 FDRERTRVSLGMKQLGEDPWVAIANRY-PEG 277
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 54/186 (29%), Positives = 91/186 (48%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIANRYPE-GSKLSGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V++ +EE +++ K + W +++ N D G+ D+G
Sbjct: 324 ----LGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNKGDKVSGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD-IRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L DG + GLVH+S++SW ++ +RD +GDE+ V+++D E+ RI+L +K
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWAGGEEAVRDY-KKGDEIDAIVLQVDPERERISLGVK 433
Query: 259 QLEEDP 264
Q E+DP
Sbjct: 434 QAEDDP 439
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 185 (70.2 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 60/204 (29%), Positives = 100/204 (49%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R+ A + +AYK +G + +G I GG V S+ FLP P
Sbjct: 81 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRD 139
Query: 133 PSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
P + KE I ++ + ++S + + E +E+ A + ++ +
Sbjct: 140 PGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETS-----AERQARLEELQEGQEIKGV 194
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K
Sbjct: 195 IKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDK 248
Query: 251 SRITLSIKQLEEDPLLETLEKVIP 274
R++L +KQL +DP + +E+ P
Sbjct: 249 KRVSLGMKQLADDPWAK-IERRYP 271
Score = 169 (64.5 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 54/193 (27%), Positives = 96/193 (49%)
Query: 90 W-KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 263 WAKIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ-- 319
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
+G + V V++ +EE +++ K W +++ + ++ G+ D+G
Sbjct: 320 ----SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGM 375
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L +G + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L I
Sbjct: 376 FIGL---EG--DIDGLVHLSDISWTESGEEAIRNY-KKGDEVQAVILGIDPERERISLGI 429
Query: 258 KQLEEDPLLETLE 270
KQLE DP +E +E
Sbjct: 430 KQLEGDPFMEFVE 442
Score = 162 (62.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 57/199 (28%), Positives = 92/199 (46%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 229
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 230 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 283
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSR 252
DYG F+ L +G+ GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 284 TDYGCFVKLE--EGV---EGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRR 337
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 338 ISLGIKQCKRNPWQEFAEK 356
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 40/117 (34%), Positives = 65/117 (55%)
Query: 168 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 222
+K + + +A ++Y S + DI GR YG F+ + D + + GL++V+++S
Sbjct: 195 RKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDIS 254
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
W + I + G EVRVKVI +D EK RI+L +KQL E+P + +K P + P
Sbjct: 255 WARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGNVYP 311
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 52/195 (26%), Positives = 86/195 (44%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
WK G +Y G + G+ VR V G + ++S + +K +
Sbjct: 297 WKDVSKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISWTR-----EKPLF--- 348
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNK----YSSRVNVEDIFVG-RDYGAF 200
L S ++V ++ +EE K+ S K D W K Y V V+ V D G
Sbjct: 349 --LPNSKVNVMLLSVDEEGHKIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIV 406
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSI 257
+ L P G ++ G V ++ +SW Q+ R L GDEV K++ ++ ++ R+ +I
Sbjct: 407 LTLLDP-GYSYVRGYVRLANISWS--QNPRKELKRFTIGDEVEAKLVHVNPDRGRVMFNI 463
Query: 258 KQLEEDPLLETLEKV 272
K +E DP E + +V
Sbjct: 464 KYVEYDPFEEFISRV 478
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 151 (58.2 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+ YGAF+ L D GLVH+SE++ ++DI D L G EV+VK++ ID EK++I+
Sbjct: 18 QSYGAFVAL---DN--STQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDIDEEKNKIS 72
Query: 255 LSIKQLEEDPLLETLEK 271
LSI+ EE P + +K
Sbjct: 73 LSIRATEEAPKEQPTKK 89
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 170 (64.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 57/193 (29%), Positives = 86/193 (44%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI-A 148
W+ E EG I G V +V FLP SH K I +
Sbjct: 134 WQKLEEAAEKKEDVEGVIFSSIKCGYTVDIKGVVAFLP-----ASHVALRQVKDITPLLG 188
Query: 149 KGLTGSIISVKVIQANEEM-KKLVFSEKDA-VWNKYSSRVNVEDIFVGR-----DYGAFI 201
K I+ + Q N + +K + E A + Y S++N DI G+ YG FI
Sbjct: 189 KKQKFRILKMDKKQGNIVVSRKAILEESLADAKSLYLSQLNEGDIIEGKVKSITKYGVFI 248
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ + + GL+H++++SW + + + G V+ K+IKIDRE +I+L +KQLE
Sbjct: 249 EIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGVKQLE 308
Query: 262 EDPLLETLEKVIP 274
E P +EK P
Sbjct: 309 ESPW-SNIEKKYP 320
Score = 166 (63.5 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 43/129 (33%), Positives = 68/129 (52%)
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RD 196
H A G + K+I+ + E KK+ K ++ W+ + V+ I G +
Sbjct: 275 HPSAVFSCGQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEE 334
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITL 255
YG F+ L G+ GLVHVSEVSW I + G+E++VKV+ ID KSR++L
Sbjct: 335 YGVFVELE--TGI---EGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSL 389
Query: 256 SIKQLEEDP 264
S+K+ +++P
Sbjct: 390 SMKRCQDNP 398
Score = 137 (53.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 39/133 (29%), Positives = 65/133 (48%)
Query: 151 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
+ G I VKV+ + ++ S K D W ++ + + I + + G F+
Sbjct: 368 MRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWQAFTLKYPLGSIVSTKIKNITNLGIFVS 427
Query: 203 LRFPDGLYH--LTGLVHVSEVSWDLIQDIR-DILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F D + + GL+ +E+SW L + N GD V K++ I+ KS+I L +KQ
Sbjct: 428 --FQDNTLNDGIEGLIRTTELSWSLSPEAAIKKYNVGDSVEAKILMINPNKSKIDLGVKQ 485
Query: 260 LEEDPLLETLEKV 272
LE DP L+ L+K+
Sbjct: 486 LEYDPFLDLLKKI 498
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 170 (64.9 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 63/237 (26%), Positives = 107/237 (45%)
Query: 51 PVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIY 103
PV +F A +T V + + + S+ AD W + A G I
Sbjct: 75 PVEEFLDEAGNLTVQVGDEVKALFERKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIV 134
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTG--SIISVKVI 161
EGKI G GGL V + FLP Q+ P ++ + G+T ++ +
Sbjct: 135 EGKITGKVKGGLTVDI-GVQAFLPASQVD-----LRPGGNLDKYI-GVTDRFKVLKLNKK 187
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG-RDYGAFIHLRFPDGLYHLTG 214
+ N + + V E++ + + N+ E + DYGAF+ + DGL
Sbjct: 188 RGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDIGGVDGL----- 242
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+HV+++SW + ++L GD++ VK++K D+EK +I+L +KQ+ DP L +K
Sbjct: 243 -LHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQK 298
Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 51/142 (35%), Positives = 74/142 (52%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G +SVK+++ ++E K+ K W + V D GR DYGAF+ L
Sbjct: 263 GDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGDRVSGRVVSMTDYGAFVAL- 321
Query: 205 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+G+ GLVHVSE+SW ++ D+L GDEV V+ ID RI+L +KQ + +
Sbjct: 322 -DEGV---EGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQAQAN 377
Query: 264 PLLETLEKVIPQG--LEPYLKS 283
P + LE+ P G LE +KS
Sbjct: 378 PWTQ-LEEKYPVGTKLEGQIKS 398
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 50/187 (26%), Positives = 82/187 (43%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQK------ 142
W A + G G++ G V V G + +MS + + P
Sbjct: 292 WLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGD 351
Query: 143 SIHEIAKGL-TGS---IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYG 198
+ + G+ TG+ + +K QAN + EK V K ++ + I D+G
Sbjct: 352 EVETVVLGIDTGNRRISLGLKQAQANPWTQ---LEEKYPVGTKLEGQI--KSI---TDFG 403
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI + +G+ GLVHVS++SW I+ ++ +G V+ V+ +D E R++L I
Sbjct: 404 VFIGV--DEGI---DGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGI 458
Query: 258 KQLEEDP 264
KQL DP
Sbjct: 459 KQLTPDP 465
Score = 114 (45.2 bits), Expect = 0.00097, P = 0.00097
Identities = 48/196 (24%), Positives = 85/196 (43%)
Query: 76 DANNRQSQ---SRSSAD-WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQ 130
D NR+ ++ A+ W G EG+I+ G+ + + G +
Sbjct: 361 DTGNRRISLGLKQAQANPWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSD 420
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM----KKLVFSEKDAVWNKYSSRV 186
+S + K P + ++ AKG T + + V NE + K+L + Y
Sbjct: 421 ISWTKRIKHPGE-VY--AKGQTVQAVVLNVDAENERLSLGIKQLTPDPWSVIPATYRPGT 477
Query: 187 NVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
V D+G F+ + +G+ GLVHVSE+S + + +D + GDE+ V+
Sbjct: 478 RVRGKVTSVTDFGVFLEIE--EGI---EGLVHVSELSREKVASPKDFASVGDELDAVVLS 532
Query: 246 IDREKSRITLSIKQLE 261
+D + +I LS+K L+
Sbjct: 533 VDDVEKKIALSVKALQ 548
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 167 (63.8 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
GFL ++S + K P+ I++ G I V+VI+ N ++L S ++ + ++
Sbjct: 313 GFLHISEISWDKNIKNPKDYINK------GQEIDVEVIEINPNERRLRVSLRNLLSRPFD 366
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
++ + D+ G +GAF+ L G+ GL+H + SWD +D ++
Sbjct: 367 EFMKSYKIADVVEGEITSVTSFGAFVKL---GGI---EGLLHNEDASWDRNDKCKDKFSQ 420
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLE--TLEKV--IPQGLEPYLKSF 284
GD+++VK+IKID E +I+LS K+L P+ E + KV I +G +K F
Sbjct: 421 GDKIKVKIIKIDEENQKISLSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDF 473
Score = 152 (58.6 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 42/127 (33%), Positives = 73/127 (57%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVED---IFVGR--DYGAFIHLR 204
G + VKVI+ ++E K L S K A+ W++ ++V D + V YGAF+ L
Sbjct: 249 GDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDL- 307
Query: 205 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
G + G +H+SE+SWD I++ +D +N+G E+ V+VI+I+ + R+ +S++ L
Sbjct: 308 ---G-NDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSR 363
Query: 264 PLLETLE 270
P E ++
Sbjct: 364 PFDEFMK 370
Score = 150 (57.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 66/207 (31%), Positives = 100/207 (48%)
Query: 96 YKES-GFIYEGKIQGFNGGGLLVRFFSLVGF-LPFPQMSPSHSCKEPQKSIHEIAKGLTG 153
Y+E+ I+ K+ G N GGL+V + V F LP Q + KE I G
Sbjct: 113 YQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQ----YGFKETNNII--------G 160
Query: 154 SIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV----NV---EDIFVG-----RDYGAFI 201
VK+I+ +++ + ++ S K + ++ R NV ED+ G YG F+
Sbjct: 161 KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFV 220
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ DGL VH SE+S+ + + EGD+V VKVIK D+E+ ++LSIK
Sbjct: 221 DVGGVDGL------VHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAAL 274
Query: 262 EDP---LLETLE-----KVIPQGLEPY 280
DP + +TL+ KVI +EPY
Sbjct: 275 PDPWSEIKDTLDVGDTIKVIVSNIEPY 301
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/189 (25%), Positives = 89/189 (47%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHSCKEPQKSIHEIAKGL 151
++YK + + EG+I G V+ + G L S + CK+ K
Sbjct: 370 KSYKIADVV-EGEITSVTSFGAFVKLGGIEGLLHNEDASWDRNDKCKD---------KFS 419
Query: 152 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G I VK+I+ +EE +K+ S K+ + +Y+ V DI G +D+G F+ L
Sbjct: 420 QGDKIKVKIIKIDEENQKISLSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVEL 479
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++ L+H ++S ++++++ GD++ ++ ID +K+RI LS+K L
Sbjct: 480 S-----KNVDALIHKEDISTSMLENLKI----GDDIEAAIVFIDEKKNRIRLSVKNLVRI 530
Query: 264 PLLETLEKV 272
E L ++
Sbjct: 531 KEREVLNEI 539
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 166 (63.5 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 55/185 (29%), Positives = 83/185 (44%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSI 155
E G I EGK++ G+ + VG + S H A G
Sbjct: 205 EEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVS---HPSAVFSCGQT 261
Query: 156 ISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPD 207
+ K+I+ + E +K+ K ++ W R V I G DYG F+ L
Sbjct: 262 VRAKIIRIDRENRKISLGVKQLEESPWANVEERYPVGSIHKGTVTSIEDYGIFVELE--T 319
Query: 208 GLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
G+ GL+HVSEVSW + + G+E+ VKV+ ID K+R++LSIK+ +E+P
Sbjct: 320 GV---EGLIHVSEVSWVRSHLPVNQLFMRGEEIEVKVLSIDATKNRMSLSIKRCKENPWE 376
Query: 267 ETLEK 271
+EK
Sbjct: 377 AFIEK 381
Score = 152 (58.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 60/206 (29%), Positives = 91/206 (44%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R K +A E+ I EG I G G V +V FLP SH
Sbjct: 100 SREKAVRDELWQKLEQAAAENLDI-EGVIFGSIKCGFTVDVGGVVAFLP-----ASHVGL 153
Query: 139 EPQKSIHEI-AKGLTGSIISVKVIQANEEM-KKLVFSEKDA-VWNKYSSRVNVEDIFVGR 195
K I + K I+ + Q N + +K V E A + + S + I G+
Sbjct: 154 RQVKDITPLLGKKQKFRILKMDKKQGNVVVSRKAVLEESLADAKDSFLSTLEEGSIVEGK 213
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
YG FI + + + GL+H++++SW + + + G VR K+I+IDRE
Sbjct: 214 VKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDREN 273
Query: 251 SRITLSIKQLEEDPLLETLEKVIPQG 276
+I+L +KQLEE P E+ P G
Sbjct: 274 RKISLGVKQLEESPWANVEERY-PVG 298
Score = 115 (45.5 bits), Expect = 0.00067, P = 0.00067
Identities = 44/184 (23%), Positives = 83/184 (45%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I++G + G+ V + V G + ++S S ++++ + G I V
Sbjct: 298 GSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVSWVRS----HLPVNQLF--MRGEEIEV 351
Query: 159 KVIQANEEMKKLVFSEK---DAVWNKY------SSRVNVEDIFVGRDYGAFIHLRFPDGL 209
KV+ + ++ S K + W + S VN + +G + G F+ L D
Sbjct: 352 KVLSIDATKNRMSLSIKRCKENPWEAFIEKHPVGSIVNTKVKSIG-NLGMFVSLTDDDTN 410
Query: 210 YHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GL+ +E+SW + N GD ++ K++ + +++I L +KQ+E DP L
Sbjct: 411 SGIEGLIRSTELSWSGSPESALKRYNIGDCLQAKILMVSANRNKIDLGVKQIEHDPFLGL 470
Query: 269 LEKV 272
L +V
Sbjct: 471 LRRV 474
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 143 (55.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ L P+GL TGLVH+SEV+ + ++DI D L GD+V VKVI ++++ +I L
Sbjct: 18 NFGAFVEL--PEGL---TGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGL 71
Query: 256 SIKQLEE 262
SIK+ +E
Sbjct: 72 SIKKAKE 78
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 143 (55.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ L P+GL TGLVH+SEV+ + ++DI D L GD+V VKVI ++++ +I L
Sbjct: 18 NFGAFVEL--PEGL---TGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGL 71
Query: 256 SIKQLEE 262
SIK+ +E
Sbjct: 72 SIKKAKE 78
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 58/196 (29%), Positives = 97/196 (49%)
Query: 79 NRQSQSRSSADW-KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS----- 132
+R+ R A W + +AY + + EG I G GG V V FLP Q+
Sbjct: 89 SREMARREEA-WDRLEKAYADDQRV-EGAIFGRVKGGFTVDLGGAVAFLPGSQVDVRPVR 146
Query: 133 ---PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE 189
P K+P + I ++ + ++S + I EE + ++ V + V+
Sbjct: 147 DAGPLMGLKQPFQ-ILKMDRRRGNIVVSRRAIL--EESRA---EQRAEVIGNLTEGQTVD 200
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
+ +YGAF+ L DGL +HV++++W + +ILN G+ V+V+VIKI++
Sbjct: 201 GVVKNITEYGAFVDLGGVDGL------LHVTDMAWRRVNHPNEILNIGETVKVQVIKINK 254
Query: 249 EKSRITLSIKQLEEDP 264
+ RI+L +KQL+EDP
Sbjct: 255 DTHRISLGMKQLQEDP 270
Score = 150 (57.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 42/134 (31%), Positives = 71/134 (52%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V+VI+ N++ ++ K + W+ ++ +E + GR DYGAF+ L
Sbjct: 242 GETVKVQVIKINKDTHRISLGMKQLQEDPWDLVGAKYPLESVHTGRVTNITDYGAFVELE 301
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRD--ILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P + GLVHVSE+SW +++ I++ EV V V++ID K R++L +KQ
Sbjct: 302 -PG----VEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTMR 355
Query: 263 DPLLETLEKVIPQG 276
+P E + P+G
Sbjct: 356 NPW-EVFAETHPEG 368
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 160 (61.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 57/183 (31%), Positives = 87/183 (47%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFP--------QMSPSHSCKEPQ 141
W A KE +G + GGL++ L GFLP + P + KE +
Sbjct: 113 WGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQP-YIGKEIE 170
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFI 201
I E+ K ++S + E+ + V SE K + R V V ++GAF+
Sbjct: 171 AKIIELDKNRNNVVLSRRAWL--EQTQSEVRSEFLNNLQKGTIRKGVVSSIV--NFGAFV 226
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L DGL VHVSE+SW I +++ GDEV V+V+ +D ++ R++LS+K +
Sbjct: 227 DLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQ 280
Query: 262 EDP 264
EDP
Sbjct: 281 EDP 283
Score = 135 (52.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 44/171 (25%), Positives = 83/171 (48%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G + G V + G + ++S H P + + ++ +T ++
Sbjct: 207 QKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKH-IDHPSEVV-QVGDEVTVEVLD 264
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHL 212
V + + + L +++D W ++ + I G+ +GAF+ R +G+
Sbjct: 265 VDMDRERVSLS-LKATQEDP-WRHFARTHAIGQIVPGKVTKLVPFGAFV--RVEEGI--- 317
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 155 (59.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 54/193 (27%), Positives = 95/193 (49%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
+A + KE G + EG +Q G V + G + Q+S ++P + + +
Sbjct: 181 EAISSLKE-GDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHER-VEQPSEVLEQ---- 234
Query: 151 LTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG---R--DYGAFIH 202
G + VKV+ + + +++ S K A W V DI G R +GAF+
Sbjct: 235 --GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVE 292
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ-LE 261
+ L + GLVHVS+++ +++ ++L G EV+VKV+++ + RI+LSIK+ LE
Sbjct: 293 I-----LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALE 347
Query: 262 EDPLLETLEKVIP 274
E+ + E + P
Sbjct: 348 ENNVTEDYSQYEP 360
Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 48/187 (25%), Positives = 93/187 (49%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + SG +++ ++ GGL+V + GF+P + H ++ K
Sbjct: 93 WVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIP-ASLVEVHYVED-----FTDYK 145
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G T ++VK+++ + E +++ S K V + S+ + D+ G D+
Sbjct: 146 GKT---LAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDF 202
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+++ DGL VH+S++S + ++ ++L +G +V+VKV+ +D + RI+LSI
Sbjct: 203 GAFVNVGGVDGL------VHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSI 256
Query: 258 KQLEEDP 264
K + P
Sbjct: 257 KAAQPGP 263
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 181 KYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEV 239
+Y++ V V G +DYGAF+ L D GLVH+SE++ ++DI D L GD V
Sbjct: 4 QYTTGVVVTGKVTGIQDYGAFVAL---DA--ETQGLVHISEITNGYVKDIHDFLKVGDTV 58
Query: 240 RVKVIKIDREKSRITLSIK 258
VKV+ ID E +++LS+K
Sbjct: 59 EVKVLSIDEEHRKMSLSLK 77
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 49/169 (28%), Positives = 88/169 (52%)
Query: 102 IYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
I G ++ + GGL V ++V F+ +S S+ KE + S G ++ +V
Sbjct: 1229 IIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSY-LKEWKDSFQ------VGQLVKGRV 1281
Query: 161 IQANEEMKKLVFSEKDAVWN-KYSSRVNVEDIFVGR----------DYGAFIHLRFPDGL 209
+ E KKL S KD+V + Y + + + D+ G+ +GAFI + DG
Sbjct: 1282 TLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVI---DGS 1338
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+++GL H +E++ ++D R + EGD V+ KV+K+DR++ +I+ +K
Sbjct: 1339 SNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLK 1387
>TAIR|locus:2010336 [details] [associations]
symbol:AT1G12800 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0015995 "chlorophyll biosynthetic
process" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019252 "starch biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002684 GO:GO:0009507 GO:GO:0006950
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 EMBL:AY045991
EMBL:BT001968 EMBL:AB493452 IPI:IPI00516731 RefSeq:NP_172740.1
UniGene:At.25318 ProteinModelPortal:Q94AJ9 SMR:Q94AJ9 STRING:Q94AJ9
PRIDE:Q94AJ9 EnsemblPlants:AT1G12800.1 GeneID:837836
KEGG:ath:AT1G12800 TAIR:At1g12800 InParanoid:Q94AJ9 OMA:YFGIFVE
PhylomeDB:Q94AJ9 ProtClustDB:CLSN2682470 ArrayExpress:Q94AJ9
Genevestigator:Q94AJ9 Uniprot:Q94AJ9
Length = 767
Score = 140 (54.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 47/142 (33%), Positives = 64/142 (45%)
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS--EKDAVWNKYSSRVNVEDIFVGR 195
+E QK + G I V V+ AN +KL+FS ++ R + + VG
Sbjct: 528 REKQKFL----SSFVGQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGD 583
Query: 196 DYGAFIHLRFPDGLY-HLTG---LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
I G++ L G LVH SEVSWD D G V KV ++D
Sbjct: 584 VVKCCIKKITYFGIFCELEGVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALE 643
Query: 252 RITLSIKQLEEDPLLETLEKVI 273
RI LS+K++ DPL E LE V+
Sbjct: 644 RIFLSLKEITPDPLTEALESVV 665
Score = 53 (23.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132
DW A + ++ + ++ + G V + SL+GFLP+ ++
Sbjct: 413 DWNKAESLVKTELRADVELISSSTRGFAVSYGSLIGFLPYRNLA 456
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ L +G TGLVH+SEV+ + ++DI DIL GDEV VKV+ I + +I L
Sbjct: 18 NFGAFVEL---EG--GKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIG-DDGKIGL 71
Query: 256 SIKQLEEDP 264
SI++ + P
Sbjct: 72 SIRKAVDRP 80
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 56/218 (25%), Positives = 104/218 (47%)
Query: 55 FSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKE--SGFIYEGKIQGFNG 112
F + PTTV + D + S ++A ++ +++++ G I +G ++ N
Sbjct: 1132 FEDKINNVIPTTVLSV--DEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVND 1189
Query: 113 GGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK-KL 170
G+ V V F+P ++S S+ KE K ++ + + G KV+ +E+ + L
Sbjct: 1190 KGIFVYLSRKVEAFVPVSKLSDSY-LKE-WKKFYKPMQYVLG-----KVVTCDEDSRISL 1242
Query: 171 VFSEKDA-----VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
E + V YS + D+F G D+G F+ L D ++TGL H++E
Sbjct: 1243 TLRESEINGDLKVLKTYSD-IKAGDVFEGTIKSVTDFGVFVKL---DNTVNVTGLAHITE 1298
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++ +D+ + GD V+ V+K + EK +I+LS+K
Sbjct: 1299 IADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 143 (55.4 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/90 (34%), Positives = 57/90 (63%)
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
++ + V ++ G+ D+GAF+++ L GLVH+S++S + + ++ ++L EG
Sbjct: 616 TAEIEVGTLYTGKVVRIVDFGAFVNV-----LPGKDGLVHISQISEERVNNVSEVLTEGQ 670
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
EV+VKV+++DR+ R+ LSIK+ E P E
Sbjct: 671 EVKVKVLEVDRQ-GRVRLSIKEAMEKPAAE 699
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 28/66 (42%), Positives = 48/66 (72%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 48/190 (25%), Positives = 92/190 (48%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQK-------SIHE 146
AY+ +G EG ++ GG ++ V F P+ Q+S + + + E
Sbjct: 112 AYR-AGIPVEGNVEKEIKGGFEIKVGGTVRAFCPYSQISLRRAANPAEFVGRQLLFKVVE 170
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFP 206
A+ ++S + I EE +K + KD + + V + +GAF+ +
Sbjct: 171 FAERGRNIVLSHRAILEEEERQKRE-ALKDTLKEGTTLTGTVTRLM---PFGAFVDI--- 223
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
G+ GL+ +SE W +++I D+L+ G++V V +ID E ++I+LS++ ++ DP
Sbjct: 224 GGV---EGLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPW- 279
Query: 267 ETLEKVIPQG 276
E + + P+G
Sbjct: 280 EGIAERFPEG 289
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 46/152 (30%), Positives = 83/152 (54%)
Query: 130 QMSPS-HSCKEPQKSIHEIAKGLTGSII------SVKVIQANEEMK-KLVFSEKDAVWNK 181
Q +P ++ K PQK I E+ G G+ I + I+ ++ K+ ++ ++ N
Sbjct: 552 QFAPRIYTMKIPQKKIAEVI-GKGGATIRQLTEETGTTIEIGDDGTIKIAATDGESAANA 610
Query: 182 YS------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
S + + V I+ G+ D+GAF+++ L GLVH+S++S + + ++
Sbjct: 611 ISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNI-----LPGKDGLVHISQISTERVNNVT 665
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
D L+EG EV+VKV+++DR+ R+ LSIK+ E
Sbjct: 666 DHLSEGQEVKVKVLEVDRQ-GRVRLSIKEAME 696
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 141 (54.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 45/167 (26%), Positives = 85/167 (50%)
Query: 100 GFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G + +G ++ + G+ V S+ + +S S+ K+ Q + + + + G I++
Sbjct: 1148 GQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSY-LKDWQ-NFFKPNQPVIGKIVNC 1205
Query: 159 KVIQANEEMKKLVFSEKDAVWN--KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
K Q + L SE + K + + DIF G D+G F+ L DG +
Sbjct: 1206 K--QEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKL---DGTVN 1260
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++GL H SE+S + + +++ + GD V+VK++KID EK +++L +K
Sbjct: 1261 VSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMK 1307
>GENEDB_PFALCIPARUM|MAL8P1.101 [details] [associations]
symbol:MAL8P1.101 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR004170
PROSITE:PS50918 EMBL:AL844507 RefSeq:XP_002808840.1
ProteinModelPortal:C0H4U1 EnsemblProtists:MAL8P1.101:mRNA
GeneID:2655243 KEGG:pfa:MAL8P1.101 EuPathDB:PlasmoDB:PF3D7_0811900
HOGENOM:HOG000280958 ProtClustDB:CLSZ2500691 Uniprot:C0H4U1
Length = 1176
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 44/173 (25%), Positives = 82/173 (47%)
Query: 96 YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE-IAKGLTGS 154
YK G ++ K+ G+ V + + F+ +S + K Q+ + E I + L
Sbjct: 702 YKTQGTPFDVKVIAILKNGVTVIYNDITSFIHISALSCKYKIKTEQEELEEKINEDL--- 758
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGL----Y 210
+++ K+ ++ KL FS N+ +NV D+ + D IH+ GL +
Sbjct: 759 LLNKKIKVFCTDINKLNFSNLIYEQNEQLKNLNVYDV-LEVD---IIHIS-KYGLMVKYF 813
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL+HVSE+S + ++ D D+++ ++ ID + R ++S K LE D
Sbjct: 814 DVVGLIHVSEISKKKVDNLNDYFKINDKLKGVIVNIDYDNKRFSMSTKILERD 866
>UNIPROTKB|C0H4U1 [details] [associations]
symbol:MAL8P1.101 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 InterPro:IPR004170 PROSITE:PS50918
EMBL:AL844507 RefSeq:XP_002808840.1 ProteinModelPortal:C0H4U1
EnsemblProtists:MAL8P1.101:mRNA GeneID:2655243 KEGG:pfa:MAL8P1.101
EuPathDB:PlasmoDB:PF3D7_0811900 HOGENOM:HOG000280958
ProtClustDB:CLSZ2500691 Uniprot:C0H4U1
Length = 1176
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 44/173 (25%), Positives = 82/173 (47%)
Query: 96 YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE-IAKGLTGS 154
YK G ++ K+ G+ V + + F+ +S + K Q+ + E I + L
Sbjct: 702 YKTQGTPFDVKVIAILKNGVTVIYNDITSFIHISALSCKYKIKTEQEELEEKINEDL--- 758
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGL----Y 210
+++ K+ ++ KL FS N+ +NV D+ + D IH+ GL +
Sbjct: 759 LLNKKIKVFCTDINKLNFSNLIYEQNEQLKNLNVYDV-LEVD---IIHIS-KYGLMVKYF 813
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL+HVSE+S + ++ D D+++ ++ ID + R ++S K LE D
Sbjct: 814 DVVGLIHVSEISKKKVDNLNDYFKINDKLKGVIVNIDYDNKRFSMSTKILERD 866
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 127 (49.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + FP GLVH+SE+ + ++++ D+LNEGD+V VK I ID++ +I L
Sbjct: 632 DFGAFVEI-FPG----TDGLVHISELDTERVKNVTDVLNEGDKVLVKCIGIDKQ-GKIKL 685
Query: 256 SIKQ 259
S K+
Sbjct: 686 SRKE 689
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 131 (51.2 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 38/128 (29%), Positives = 69/128 (53%)
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMK-KLVFSEKDAVWNKYS-SRVNVEDIFVGR 195
KEP+K + K +TG +++V+ + E+ K V + Y +++V D+ GR
Sbjct: 1383 KEPEKEF-PVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGR 1441
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
+G FI + G+ GL H+S++S D +++++ G+ VR K++K+D EK
Sbjct: 1442 IRRVEPFGLFIDID-QTGM---VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEK 1497
Query: 251 SRITLSIK 258
RI+L +K
Sbjct: 1498 KRISLGMK 1505
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 37/117 (31%), Positives = 65/117 (55%)
Query: 157 SVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
+VK+ +N E K + + +S V V I+ G+ D+GAF+++ L
Sbjct: 593 TVKIASSNGEATKEAIRRIEEI----TSEVEVGRIYNGKVIRIVDFGAFVNI-----LPG 643
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE-EDPLLE 267
GLVH+S++S + + ++ D L EV VKV+++DR+ R+ LSIK+ + ++P E
Sbjct: 644 KDGLVHISQISDERVANVSDHLELNQEVTVKVMEVDRQ-GRVRLSIKEAQTKEPAAE 699
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
++ V V I+ G+ D+GAF+ + L GLVH+S+++ ++ + D L EG
Sbjct: 617 TAEVEVGVIYTGKVARLADFGAFVTI-----LPGKDGLVHISQIADKRVEKVSDYLTEGQ 671
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
EV+VKV++IDR+ R+ LS+K+ E E V PQ
Sbjct: 672 EVQVKVLEIDRQ-GRVRLSMKEAVETSDAAAAE-VAPQ 707
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
++ V V I+ G+ D+GAF+ + L GLVH+S+++ ++ + D L EG
Sbjct: 617 TAEVEVGVIYTGKVARLADFGAFVTI-----LPGKDGLVHISQIADKRVEKVSDYLTEGQ 671
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
EV+VKV++IDR+ R+ LS+K+ E E V PQ
Sbjct: 672 EVQVKVLEIDRQ-GRVRLSMKEAVETSDAAAAE-VAPQ 707
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ + G+ H GLVH+S ++ I D R+I+ G+ V+VKV+++D + RI+L
Sbjct: 670 NFGAFVDI----GV-HQDGLVHISSITEKFISDPREIVKAGEVVKVKVVEVDIARKRISL 724
Query: 256 SIKQLEEDPLLET 268
+++ LEE +T
Sbjct: 725 TMR-LEEQVSAQT 736
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ + G+ H GLVH+S +S ++D ++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIAL 717
Query: 256 SIKQLEEDP 264
+++ L+E P
Sbjct: 718 TMR-LDEQP 725
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ + G+ H GLVH+S ++ I D R+++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
Query: 256 SIKQLEEDP 264
S++ L ++P
Sbjct: 718 SMR-LNDEP 725
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ + G+ H GLVH+S ++ I D R+++ GD V+VKV+++D ++ RI L
Sbjct: 663 NFGAFVDI----GV-HQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
Query: 256 SIKQLEEDP 264
S++ L ++P
Sbjct: 718 SMR-LNDEP 725
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 121 (47.7 bits), Expect = 0.00057, P = 0.00057
Identities = 36/124 (29%), Positives = 65/124 (52%)
Query: 139 EPQKSIHEIAKG-LTGSIISVKVIQANEEMKKLV-FSEKDAVWNKYSSRVNVED--IFVG 194
+P ++++ KG + G K I+ + + K+ SE + + N++ + VG
Sbjct: 1188 KPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVG 1247
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
DYG I + DG ++ GL H SE++ ++ +I + + GD+VR V+ +D EK RI
Sbjct: 1248 -DYGVLIRI---DGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIA 1303
Query: 255 LSIK 258
L +K
Sbjct: 1304 LGLK 1307
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 118 (46.6 bits), Expect = 0.00084, P = 0.00084
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 173 SEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLT-GLVHVSEVSWDLIQDIRD 231
SE + Y RVN I + +GAFI L +G GLVH+S++ + +Q + D
Sbjct: 228 SEVAEIGKIYDGRVN--SI---QSFGAFITL---EGFRQKQEGLVHISQIRNERVQTVAD 279
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+L G+ V+VKV KI E +I+LS+K+++++
Sbjct: 280 VLKRGENVKVKVNKI--ENGKISLSMKEVDQN 309
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 118 (46.6 bits), Expect = 0.00084, P = 0.00084
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 173 SEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLT-GLVHVSEVSWDLIQDIRD 231
SE + Y RVN I + +GAFI L +G GLVH+S++ + +Q + D
Sbjct: 228 SEVAEIGKIYDGRVN--SI---QSFGAFITL---EGFRQKQEGLVHISQIRNERVQTVAD 279
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+L G+ V+VKV KI E +I+LS+K+++++
Sbjct: 280 VLKRGENVKVKVNKI--ENGKISLSMKEVDQN 309
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 289 277 0.00080 115 3 11 22 0.37 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 609 (65 KB)
Total size of DFA: 204 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.77u 0.09s 23.86t Elapsed: 00:00:01
Total cpu time: 23.78u 0.09s 23.87t Elapsed: 00:00:01
Start: Sat May 11 03:07:41 2013 End: Sat May 11 03:07:42 2013