BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022938
(289 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225433644|ref|XP_002264430.1| PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera]
gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera]
Length = 390
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/198 (78%), Positives = 180/198 (90%), Gaps = 5/198 (2%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
Q+R SADWKAARA+ ESGFIYEG+I+GFNGGGLLVRF+SLVGFLPFPQ+SPSHSCKEP K
Sbjct: 88 QARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHK 147
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF---VG--RDY 197
+I EIAKGL GS+ISVKVI A+EE +KL+FSEK+A W K+S ++N+ DIF VG DY
Sbjct: 148 TIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDY 207
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+HLRFPDGLYHLTGLVHVSEVSWDL+QD+RD+LNEGDEVRVK++K+DR KSRITLSI
Sbjct: 208 GAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSI 267
Query: 258 KQLEEDPLLETLEKVIPQ 275
KQLEEDPLLETL+KVIPQ
Sbjct: 268 KQLEEDPLLETLDKVIPQ 285
>gi|147802809|emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera]
Length = 418
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/208 (75%), Positives = 180/208 (86%), Gaps = 15/208 (7%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
Q+R SADWKAARA+ ESGFIYEG+I+GFNGGGLLVRF+SLVGFLPFPQ+SPSHSCKEP K
Sbjct: 88 QARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHK 147
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF---VG--RDY 197
+I EIAKGL GS+ISVKVI A+EE +KL+FSEK+A W K+S ++N+ DIF VG DY
Sbjct: 148 TIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDY 207
Query: 198 GAFIHLRFPD----------GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
GAF+HLRFPD GLYHLTGLVHVSEVSWDL+QD+RD+LNEGDEVRVK++K+D
Sbjct: 208 GAFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVD 267
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQ 275
R KSRITLSIKQLEEDPLLETL+KVIPQ
Sbjct: 268 RVKSRITLSIKQLEEDPLLETLDKVIPQ 295
>gi|449468800|ref|XP_004152109.1| PREDICTED: 30S ribosomal protein S1-like [Cucumis sativus]
Length = 378
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 148/217 (68%), Positives = 180/217 (82%), Gaps = 8/217 (3%)
Query: 64 PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV 123
P + +LD S ++ R +R SADWKAAR Y +SGFIYEG+I+G N GGLLVRF+SLV
Sbjct: 60 PDPIAGVLDTSPESVRR---ARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 116
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS 183
GFLPFPQ+SPSHSCKEP KSI +IAK L GS+ISVKVIQA+E+ +KL+FSEK+A +K+S
Sbjct: 117 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 176
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+V V D++ G+ DYGAF+HLR DGLYHLTGLVHVSEVSWDL+QD+RDIL+EGDE
Sbjct: 177 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 236
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
V VKVI +++ KSRITLSI+QLEEDPLLETL+KVIPQ
Sbjct: 237 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQ 273
>gi|449484641|ref|XP_004156938.1| PREDICTED: 30S ribosomal protein S1-like [Cucumis sativus]
Length = 379
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 148/217 (68%), Positives = 180/217 (82%), Gaps = 8/217 (3%)
Query: 64 PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV 123
P + +LD S ++ R +R SADWKAAR Y +SGFIYEG+I+G N GGLLVRF+SLV
Sbjct: 61 PDPIAGVLDTSPESVRR---ARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 117
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS 183
GFLPFPQ+SPSHSCKEP KSI +IAK L GS+ISVKVIQA+E+ +KL+FSEK+A +K+S
Sbjct: 118 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 177
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+V V D++ G+ DYGAF+HLR DGLYHLTGLVHVSEVSWDL+QD+RDIL+EGDE
Sbjct: 178 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 237
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
V VKVI +++ KSRITLSI+QLEEDPLLETL+KVIPQ
Sbjct: 238 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQ 274
>gi|224131510|ref|XP_002321102.1| predicted protein [Populus trichocarpa]
gi|222861875|gb|EEE99417.1| predicted protein [Populus trichocarpa]
Length = 299
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 144/194 (74%), Positives = 169/194 (87%), Gaps = 6/194 (3%)
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
ADWKA +AY + G I +G+++GFNGGGL+VRF+SLVGFLPFP +SPSHSCK+PQK+IHEI
Sbjct: 1 ADWKAVKAYYDGGHILQGRVEGFNGGGLIVRFYSLVGFLPFPLLSPSHSCKDPQKTIHEI 60
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
AK LTG +ISVKVI A EE +KL+FSEK+AVW+K+S +NV +IF GR DYGAFIH
Sbjct: 61 AKDLTGLLISVKVIHAEEENRKLIFSEKEAVWSKFSKGINVGEIFAGRVGSVEDYGAFIH 120
Query: 203 LRFPDG-LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+RFPDG LYHLTGLVHVSEVSWDL+QD+RDILN GDEV VK+I ID+ KSRITLSIKQLE
Sbjct: 121 MRFPDGSLYHLTGLVHVSEVSWDLVQDVRDILNVGDEVTVKIIDIDQGKSRITLSIKQLE 180
Query: 262 EDPLLETLEKVIPQ 275
EDPLLETL+KVIPQ
Sbjct: 181 EDPLLETLDKVIPQ 194
>gi|356569689|ref|XP_003553029.1| PREDICTED: 40S ribosomal protein S1-like [Glycine max]
Length = 378
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/217 (67%), Positives = 177/217 (81%), Gaps = 13/217 (5%)
Query: 64 PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV 123
PT +P LDD+ Q+R S+DWKAA+ Y++S IY G+++GFN GGLLVRF+S++
Sbjct: 65 PTPPDP-LDDAR-------QARRSSDWKAAKTYQDSKVIYNGRVEGFNSGGLLVRFYSVM 116
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS 183
GFLPFPQ+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+KYS
Sbjct: 117 GFLPFPQLSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKYS 176
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+VNV DIF R DYGAF+HLRFPDGLYHLTGL+HVSEVSWDLIQD+RDIL GDE
Sbjct: 177 KQVNVGDIFEVRVGYVEDYGAFVHLRFPDGLYHLTGLIHVSEVSWDLIQDVRDILKVGDE 236
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
VR KV+ ID KSRI LSI+QLEEDPLLETL+KVIPQ
Sbjct: 237 VRAKVVGIDWGKSRINLSIRQLEEDPLLETLDKVIPQ 273
>gi|356538073|ref|XP_003537529.1| PREDICTED: 30S ribosomal protein S1 homolog [Glycine max]
Length = 383
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 176/217 (81%), Gaps = 13/217 (5%)
Query: 64 PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV 123
PT +P LDD Q+R S+DWKAA+ Y++S IY G+++GFN GGLLVRF+S++
Sbjct: 70 PTPPDP-LDDVR-------QARRSSDWKAAKTYQDSKLIYNGRVEGFNSGGLLVRFYSIM 121
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS 183
GFLPFPQ+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+K+S
Sbjct: 122 GFLPFPQLSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKFS 181
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+VNV DIF R DYGAF+HLRFPDGLY LTGL+HVSEVSWDLIQD+RDIL GDE
Sbjct: 182 KQVNVGDIFEVRVGYVEDYGAFVHLRFPDGLYRLTGLIHVSEVSWDLIQDVRDILKVGDE 241
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
VRVKV+ ID KSRI LSI+QLEEDPLLETL+KVIPQ
Sbjct: 242 VRVKVVGIDWGKSRINLSIRQLEEDPLLETLDKVIPQ 278
>gi|18403854|ref|NP_566737.1| ribosomal protein S1-like RNA-binding domain-containing protein
[Arabidopsis thaliana]
gi|9293944|dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana]
gi|15146284|gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana]
gi|22655022|gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thaliana]
gi|332643282|gb|AEE76803.1| ribosomal protein S1-like RNA-binding domain-containing protein
[Arabidopsis thaliana]
Length = 392
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/206 (68%), Positives = 169/206 (82%), Gaps = 9/206 (4%)
Query: 73 DSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132
D+SD ++ + +DWK A+AY +SG +EG++QGFNGGGLL+RF SLVGFLP+PQ+S
Sbjct: 84 DTSD----EASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLS 139
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
PS SCKEPQKSIHEIAK L GS + VKV+QA+EE +KL+ SEK A+W KYS VNV D+F
Sbjct: 140 PSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVF 199
Query: 193 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
GR DYGAFIHLRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV V ID
Sbjct: 200 NGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNID 259
Query: 248 REKSRITLSIKQLEEDPLLETLEKVI 273
+EKSRITLSIKQLE+DPLLETL+KVI
Sbjct: 260 KEKSRITLSIKQLEDDPLLETLDKVI 285
>gi|297835412|ref|XP_002885588.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331428|gb|EFH61847.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 392
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 137/191 (71%), Positives = 162/191 (84%), Gaps = 5/191 (2%)
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
+DWK A+AY +SG +EG+++GFNGGGLL+RF SLVGFLP+PQ+SPS SCKEPQKSIHEI
Sbjct: 95 SDWKTAKAYCKSGDTFEGEVEGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEI 154
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
AK L GS + VKV+QA+EE +KL+ SEK A+W KYS V+V D+F GR DYGAFIH
Sbjct: 155 AKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVSVGDVFTGRVGSVEDYGAFIH 214
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
LRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV V ID+EKSRITLSIKQLE+
Sbjct: 215 LRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLED 274
Query: 263 DPLLETLEKVI 273
DPLLETL+KVI
Sbjct: 275 DPLLETLDKVI 285
>gi|357462911|ref|XP_003601737.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355490785|gb|AES71988.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 399
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/212 (64%), Positives = 170/212 (80%), Gaps = 8/212 (3%)
Query: 69 PILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF 128
P DS DA Q+R S+DWKAA AY++SG IY G+++GFN GGLLVRF+S++GFLP+
Sbjct: 86 PSAPDSYDA---LRQARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPY 142
Query: 129 PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV 188
PQ+SP HSC+EP ++I E A+ L G+I+SVKVI +EE +KLV SEK+A W K+S +N+
Sbjct: 143 PQLSPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINI 202
Query: 189 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 243
D+F GR DYGAF+HLRFPDGLYHLTGL+H+SEVSWDL+QD+RD L EG+EVRVKV
Sbjct: 203 GDLFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKV 262
Query: 244 IKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
I ID K R+TLSIKQLEEDPLLETL+KVI Q
Sbjct: 263 ISIDTVKMRLTLSIKQLEEDPLLETLDKVIRQ 294
>gi|388509420|gb|AFK42776.1| unknown [Medicago truncatula]
Length = 399
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/212 (63%), Positives = 168/212 (79%), Gaps = 8/212 (3%)
Query: 69 PILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF 128
P DS DA Q+R S+DWKAA AY++SG IY G+++GFN GGLLVRF+S++GFLP+
Sbjct: 86 PSAPDSYDA---LRQARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPY 142
Query: 129 PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV 188
P +SP HSC+EP ++I E A+ L G+I+SVKVI +EE +KLV SEK+A W K+S +N+
Sbjct: 143 PPLSPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINI 202
Query: 189 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 243
+F GR DYGAF+HLRFPDGLYHLTGL+H+SEVSWDL+QD+RD L EG+EVRVKV
Sbjct: 203 GGLFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKV 262
Query: 244 IKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
I ID K R+TLSIKQLEEDPLLETL+KVI Q
Sbjct: 263 ISIDTVKMRLTLSIKQLEEDPLLETLDKVIRQ 294
>gi|255555184|ref|XP_002518629.1| hypothetical protein RCOM_1307020 [Ricinus communis]
gi|223542228|gb|EEF43771.1| hypothetical protein RCOM_1307020 [Ricinus communis]
Length = 365
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 184/286 (64%), Gaps = 40/286 (13%)
Query: 12 TCLDASSCTHSSLS---------LSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAAKI 62
T L AS HS LS L+ +LS+ L + + ++ + S +
Sbjct: 5 TALHASVSAHSLLSQLFTSNDASLTHTLSTHFSSCKLFHK--SRHSISAAARVSVSENSN 62
Query: 63 TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSL 122
T L+DS DA Q+R SADWKAARAY++SG I+EG+I+GFNGGGLLVRF+SL
Sbjct: 63 DSATTTGFLEDSPDAIR---QTRRSADWKAARAYRDSGSIFEGRIEGFNGGGLLVRFYSL 119
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182
VGFLPFPQ+SPSHSCKEPQ SIHEIA+GL GS ISVKV+QA EE +KL+FSEK+A W+K+
Sbjct: 120 VGFLPFPQLSPSHSCKEPQISIHEIARGLNGSSISVKVLQAEEESRKLIFSEKEAEWSKF 179
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
S R+ V DIFVGR DYGAF+HL FPDG+Y W G
Sbjct: 180 SKRIKVGDIFVGRVGSTEDYGAFVHLLFPDGIY---------STLW--------FYGCGF 222
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ----GLEP 279
+++K+ R+KSR+TLSIKQLEEDPLLETL+KVIPQ GL+P
Sbjct: 223 LLKIKIKTQCRQKSRMTLSIKQLEEDPLLETLDKVIPQDGSVGLDP 268
>gi|194689506|gb|ACF78837.1| unknown [Zea mays]
gi|194706906|gb|ACF87537.1| unknown [Zea mays]
gi|219887451|gb|ACL54100.1| unknown [Zea mays]
gi|414873910|tpg|DAA52467.1| TPA: RNA binding S1 [Zea mays]
Length = 366
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 22/279 (7%)
Query: 1 MLSLSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAA 60
ML+ S R G + + S + L + + P+++ + P G+ +AA
Sbjct: 1 MLAASLRPGPSLAAFPGTAQRSPVPF-LPFPARLHHRPVLLSATAEGTGAPAGQGDASAA 59
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
+ + + +ADW++ARA K+ G I+ + N GGL+VRF
Sbjct: 60 PLDEVRL----------------PQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFN 103
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
SL GF+P P +SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+
Sbjct: 104 SLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWS 163
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
YSSR+ + DI+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNE
Sbjct: 164 TYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNE 223
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
GD V+V V+ ID KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 224 GDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIP 262
>gi|414873909|tpg|DAA52466.1| TPA: hypothetical protein ZEAMMB73_351223, partial [Zea mays]
Length = 263
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 22/279 (7%)
Query: 1 MLSLSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAA 60
ML+ S R G + + S + L + + P+++ + P G+ +AA
Sbjct: 1 MLAASLRPGPSLAAFPGTAQRSPVPF-LPFPARLHHRPVLLSATAEGTGAPAGQGDASAA 59
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
+ + + +ADW++ARA K+ G I+ + N GGL+VRF
Sbjct: 60 PL----------------DEVRLPQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFN 103
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
SL GF+P P +SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+
Sbjct: 104 SLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWS 163
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
YSSR+ + DI+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNE
Sbjct: 164 TYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNE 223
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
GD V+V V+ ID KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 224 GDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIP 262
>gi|226509759|ref|NP_001151317.1| RNA binding S1 [Zea mays]
gi|195645792|gb|ACG42364.1| RNA binding S1 [Zea mays]
Length = 366
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 22/279 (7%)
Query: 1 MLSLSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAA 60
ML+ S R G + + S + L + + P+++ + P G+ +AA
Sbjct: 1 MLAASLRPGPSLAAFPGTAQRSPVPF-LPFPARLHHRPVLLSATAEGTGAPAGQGDASAA 59
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
+ + + +ADW++ARA K+ G I+ + N GGL+VRF
Sbjct: 60 PLDEVRL----------------PQFAADWESARACKDQGRIFTLPVLRANSGGLIVRFN 103
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
SL GF+P P +SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+
Sbjct: 104 SLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWS 163
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
YSSR+ + DI+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNE
Sbjct: 164 TYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNE 223
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
GD V+V V+ ID KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 224 GDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIP 262
>gi|242032271|ref|XP_002463530.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
gi|241917384|gb|EER90528.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
Length = 366
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/208 (58%), Positives = 156/208 (75%), Gaps = 6/208 (2%)
Query: 73 DSSDANNRQSQ-SRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
D+SDA +++ + + DW+AAR YK+ G I + N GGL+VRF SL GF+P P +
Sbjct: 55 DASDAPVDEARLPQFAVDWEAARTYKDQGNILTLPVLRANSGGLIVRFNSLQGFVPNPLL 114
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
SP+H C++P++ I +I K L G+ ISVKV + NEE +KLVFSEKDA W+ YSS + + DI
Sbjct: 115 SPAHWCEDPKRPIQDITKDLVGTSISVKVAEVNEEERKLVFSEKDASWSTYSSLIKIGDI 174
Query: 192 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+ I
Sbjct: 175 YDGIVGSVFPYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVQDFLNEGDAVKVIVVNI 234
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIP 274
D KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 235 DTAKSRIALSIRQLEEDPLLETLDKVIP 262
>gi|357114737|ref|XP_003559151.1| PREDICTED: 30S ribosomal protein S1-like [Brachypodium distachyon]
Length = 354
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 162/225 (72%), Gaps = 7/225 (3%)
Query: 62 ITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
+T V+P +S A + ++ + DW+A RA K+ G + + N GGL++R+ S
Sbjct: 31 VTCAAVSPEEASTSTAFDEARLAQFAVDWEAVRADKDRGRVLRLPVVRANTGGLILRYNS 90
Query: 122 LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNK 181
L GF+P P +SP+H CK+P++ I +I K L GS ISVKV + NEE KKLVFSEKDA W+
Sbjct: 91 LQGFVPNPLLSPAHWCKDPKRPIQDITKDLVGSSISVKVSEVNEEEKKLVFSEKDASWSA 150
Query: 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 236
YSS+V + D + G YGAF+HLRFPDG YHLTGLVH+SEVSWDL+QD++D LNEG
Sbjct: 151 YSSQVKIGDTYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVQDFLNEG 210
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYL 281
D V+V V+KID EKSRI LSI+QLEEDPLLETL+K+IP LEP L
Sbjct: 211 DTVKVVVVKIDAEKSRIALSIRQLEEDPLLETLDKIIP--LEPDL 253
>gi|224035425|gb|ACN36788.1| unknown [Zea mays]
gi|414873911|tpg|DAA52468.1| TPA: hypothetical protein ZEAMMB73_351223 [Zea mays]
Length = 370
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 177/283 (62%), Gaps = 26/283 (9%)
Query: 1 MLSLSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAA 60
ML+ S R G + + S + L + + P+++ + P G+ +AA
Sbjct: 1 MLAASLRPGPSLAAFPGTAQRSPVPF-LPFPARLHHRPVLLSATAEGTGAPAGQGDASAA 59
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
+ + + +ADW++ARA K+ G I+ + N GGL+VRF
Sbjct: 60 PLDEVRL----------------PQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFN 103
Query: 121 SLVGFLPFPQMSPSHSCK----EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD 176
SL GF+P P +SP+H CK +P++ I ++ K L G+ ISVKV + NEE KKLVFSEKD
Sbjct: 104 SLQGFVPNPLLSPAHWCKAKLADPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKD 163
Query: 177 AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 231
A W+ YSSR+ + DI+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D
Sbjct: 164 ASWSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKD 223
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
LNEGD V+V V+ ID KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 224 FLNEGDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIP 266
>gi|116789895|gb|ABK25430.1| unknown [Picea sitchensis]
Length = 381
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 147/196 (75%), Gaps = 7/196 (3%)
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
RS+ DWK A YK +G I EGK+ G N GG+LVRF SL GFLP+ QMSPS K+ K+I
Sbjct: 83 RSAVDWKKAETYKGNGEIVEGKVDGSNSGGVLVRFHSLQGFLPYSQMSPSLLLKDRSKTI 142
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGA 199
E AK L GS +S+KVI+ +EE L+FSEK A+W K+S +N D+F GR +GA
Sbjct: 143 SESAKDLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFS--INEGDVFEGRVSSVTKFGA 200
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F++LRFPDG Y++ GLVH+SEVSWDL++D+RDIL +GD+VRVKVI+I+ EKSR+ SIKQ
Sbjct: 201 FVNLRFPDGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQINVEKSRLAFSIKQ 260
Query: 260 LEEDPLLETLEKVIPQ 275
L+ DPL ETL+ ++PQ
Sbjct: 261 LQADPLFETLDTLMPQ 276
>gi|41469635|gb|AAS07358.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712065|gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|218194088|gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Group]
gi|222626154|gb|EEE60286.1| hypothetical protein OsJ_13343 [Oryza sativa Japonica Group]
Length = 379
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/193 (61%), Positives = 149/193 (77%), Gaps = 5/193 (2%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+ADW+AARA ++ G I + ++ N GGL+VRF SL GF+P P +SP+H CK+P++ I +
Sbjct: 78 AADWQAARAERDQGKILKLQVIRANSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQD 137
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
+ K L GS ISVKV++ NEE +KLVFSEKDA W +SS V + I+ G YGAF+
Sbjct: 138 VTKDLVGSSISVKVVEVNEEERKLVFSEKDASWFTHSSLVKIGAIYDGIVGSVFHYGAFV 197
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
HLRFPDG YHLTGLVH+SEVSWDL+QD+RD LNEGD V+V V+ ID EKSRI LSI+QLE
Sbjct: 198 HLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVNIDMEKSRIALSIRQLE 257
Query: 262 EDPLLETLEKVIP 274
EDPLLETL+KVIP
Sbjct: 258 EDPLLETLDKVIP 270
>gi|115456549|ref|NP_001051875.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|41469634|gb|AAS07357.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712064|gb|ABF99859.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113550346|dbj|BAF13789.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|215712403|dbj|BAG94530.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 339
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/193 (61%), Positives = 149/193 (77%), Gaps = 5/193 (2%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+ADW+AARA ++ G I + ++ N GGL+VRF SL GF+P P +SP+H CK+P++ I +
Sbjct: 78 AADWQAARAERDQGKILKLQVIRANSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQD 137
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
+ K L GS ISVKV++ NEE +KLVFSEKDA W +SS V + I+ G YGAF+
Sbjct: 138 VTKDLVGSSISVKVVEVNEEERKLVFSEKDASWFTHSSLVKIGAIYDGIVGSVFHYGAFV 197
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
HLRFPDG YHLTGLVH+SEVSWDL+QD+RD LNEGD V+V V+ ID EKSRI LSI+QLE
Sbjct: 198 HLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVNIDMEKSRIALSIRQLE 257
Query: 262 EDPLLETLEKVIP 274
EDPLLETL+KVIP
Sbjct: 258 EDPLLETLDKVIP 270
>gi|326502718|dbj|BAJ98987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 151/200 (75%), Gaps = 7/200 (3%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+ADWKA RA K+ G + + N GGL++++ S+ GF+P P +SP+H CK+P++ I +
Sbjct: 73 AADWKAVRADKDQGKVLTLPVLRSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQD 132
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
+ K L GS +SVKV++ANE KKLVFSEKDA W+ YSS+V + I+ G YGAF+
Sbjct: 133 VTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFV 192
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
HL+FPDG YHLTGLVH+SEVSWDL+QD++D L EGD V+V V+ +D EKSRI LSI+QLE
Sbjct: 193 HLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 252
Query: 262 EDPLLETLEKVIPQGLEPYL 281
EDPLLETL+K+IP LEP L
Sbjct: 253 EDPLLETLDKIIP--LEPDL 270
>gi|326490501|dbj|BAJ84914.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 369
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 151/200 (75%), Gaps = 7/200 (3%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+ADWKA RA K+ G + + N GGL++++ S+ GF+P P +SP+H CK+P++ I +
Sbjct: 71 AADWKAVRADKDQGKVLTLPVLRSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQD 130
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
+ K L GS +SVKV++ANE KKLVFSEKDA W+ YSS+V + I+ G YGAF+
Sbjct: 131 VTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFV 190
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
HL+FPDG YHLTGLVH+SEVSWDL+QD++D L EGD V+V V+ +D EKSRI LSI+QLE
Sbjct: 191 HLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 250
Query: 262 EDPLLETLEKVIPQGLEPYL 281
EDPLLETL+K+IP LEP L
Sbjct: 251 EDPLLETLDKIIP--LEPDL 268
>gi|168056001|ref|XP_001780011.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668616|gb|EDQ55220.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 298
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 133/195 (68%), Gaps = 5/195 (2%)
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
+ +ADW+ A+ E G I+ G++ N GGLLVRF SL GFLPF QM K+ K++
Sbjct: 3 QKTADWQKAQKVMEDGTIHRGRVDACNSGGLLVRFGSLQGFLPFSQMDSGRIPKDGSKAL 62
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGA 199
EIAK L G ++SVK+I+ NE ++L+FSE+ AV + V ++ G+ D+GA
Sbjct: 63 AEIAKELVGDLVSVKMIEVNESERRLIFSERQAVLEENLRLVEEGSVYNGKVNSVTDFGA 122
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F+ L PDG ++GLVH+SE+SWD +++ RD+L EG VRVKVI++D+E+ R+ LSIKQ
Sbjct: 123 FVDLALPDGTSSVSGLVHISELSWDPVRNPRDLLEEGQMVRVKVIQLDKERKRLALSIKQ 182
Query: 260 LEEDPLLETLEKVIP 274
LE DPLLETL+ ++P
Sbjct: 183 LETDPLLETLDTLMP 197
>gi|302780185|ref|XP_002971867.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
gi|302781232|ref|XP_002972390.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
gi|300159857|gb|EFJ26476.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
gi|300160166|gb|EFJ26784.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
Length = 297
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 136/192 (70%), Gaps = 5/192 (2%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
DWK A ++++ G I++ KI+ FN GG+++RF+SL GFLP+ Q+S + ++ K++ ++
Sbjct: 1 DWKRAESFQKKGGIFQAKIESFNQGGVVLRFYSLRGFLPYSQLSLARLPRDTSKTVMDVG 60
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 203
K L G + V VI+A+ + +KLVFSE+ A+W+++ S++ + ++ G+ DYGAF+ +
Sbjct: 61 KELIGKSVPVLVIEADRKKRKLVFSERKALWSQFGSKIQIGNVLDGQVTGIVDYGAFVDI 120
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
R+ DG Y GLVHV E+SWD + + RD+L+ G +V+VKV ID E R+ LSI+QLE D
Sbjct: 121 RYADGTYPAVGLVHVKEISWDTVTNPRDVLSVGQDVKVKVTGIDEESMRLALSIRQLEPD 180
Query: 264 PLLETLEKVIPQ 275
PL+ETL+ ++P+
Sbjct: 181 PLMETLDTLMPK 192
>gi|255638100|gb|ACU19364.1| unknown [Glycine max]
Length = 115
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 94/110 (85%), Gaps = 5/110 (4%)
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182
+GFLPFPQ+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+KY
Sbjct: 1 MGFLPFPQLSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKY 60
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 227
S +VNV DIF R DYGAF+HLRFPDGLYHLTGL+HVSEVSWDLIQ
Sbjct: 61 SKQVNVGDIFEVRVGYVEDYGAFVHLRFPDGLYHLTGLIHVSEVSWDLIQ 110
>gi|168030832|ref|XP_001767926.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680768|gb|EDQ67201.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 299
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 6/199 (3%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+A W+ A+ ESG I+ G + N GGL+V F L GFLPF QM ++ +S+ E
Sbjct: 4 NAAWQKAQETMESGSIHRGVVDACNSGGLVVLFGPLQGFLPFSQMDQGRLLRDSSRSLSE 63
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFI 201
A+ L G ISVK+I+ANE ++L+FSEK AV + ++ G+ D+GAF+
Sbjct: 64 FAEELVGDFISVKIIEANETTRRLIFSEKQAVLEANLRLLEEGLVYEGKVNSVTDFGAFV 123
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ PDG + GLV SE+SW+ +++ RDI G VRVK++++D+EKS + LSIKQL+
Sbjct: 124 DVVLPDGTSSVRGLVRTSELSWNPVRNPRDICEIGQSVRVKILQLDKEKSHLYLSIKQLQ 183
Query: 262 EDPLLETLEKVIP-QGLEP 279
+DP LET +K +P Q EP
Sbjct: 184 DDPRLETPDKSMPVQSQEP 202
>gi|384249652|gb|EIE23133.1| nucleic acid-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 7/190 (3%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ +++G + GKI N GG++V L GF+P ++ P K S+ ++ +
Sbjct: 2 WENVLEMQKNGTTWTGKITAVNRGGVVVDVNGLRGFIPMSRLDPGRLPKT-DFSMQDL-E 59
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
GL G +S KVIQ N ++LV SE+ + + ++ + D+ G DYGAF+ LR
Sbjct: 60 GLVGQAVSAKVIQVNIPSRQLVLSEQATMVEQLAASLQTGDVVEGIVTRTTDYGAFVSLR 119
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
PDG H GL+H+SE+SWD I D++ G V KVIK+D+EK I LS+KQ+E DP
Sbjct: 120 SPDGNLHGAGLIHISELSWDKIMTPEDVVQPGSLVNCKVIKVDKEKLHINLSLKQMEGDP 179
Query: 265 LLETLEKVIP 274
LLE L+ ++P
Sbjct: 180 LLENLDGLLP 189
>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 408
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 27/206 (13%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-----SC 137
++R +DW+ A +E+ +Y KI G+N GGL+V L GF+P Q+S S S
Sbjct: 112 KAREESDWQKAEQMRETKEVYHSKITGYNKGGLIVPVHGLRGFVPASQISLSRRASMGSG 171
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVED 190
+ P++ + + G I V VI+ + E ++L+ SE+ + + + + +
Sbjct: 172 ESPEQRWSK----MVGEEIDVCVIEVDRERRRLILSERVATPETRETLKERVIETLAEGE 227
Query: 191 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
I GR D+GAF+++ DGL VH+SE+SWD I+ ++L G EV+VKVI
Sbjct: 228 IRTGRVTSLADFGAFVNISGADGL------VHLSEISWDRIKHPSEVLQVGQEVKVKVIS 281
Query: 246 IDREKSRITLSIKQLEEDPLLETLEK 271
+DREK RI LSI+Q + DP LE K
Sbjct: 282 VDREKRRIGLSIRQTQGDPWLERAAK 307
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I G++ G V G + ++S K P + + G + VK
Sbjct: 226 GEIRTGRVTSLADFGAFVNISGADGLVHLSEISWDR-IKHPSEVLQ------VGQEVKVK 278
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
VI + E +++ S + W + +++ V + G +GAF L
Sbjct: 279 VISVDREKRRIGLSIRQTQGDPWLERAAKYQVGMLVEGVITRLTKFGAFAKLD-----ED 333
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ GL+H+SE+S I+ +++L EGD+V ++++KID E RI LS+++++
Sbjct: 334 IEGLIHISEISEKRIEHPKEVLKEGDKVTLRIVKIDPENHRIGLSLRRVD 383
>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 393
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 32/212 (15%)
Query: 75 SDANNRQ-------SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP 127
D NRQ + + + DW+ A G I +G++ G+N GGLLV+F + GF+P
Sbjct: 86 QDPENRQGDLVLSLTMVQVARDWEEAARLSAEGGIVQGQVIGYNKGGLLVQFNRIRGFVP 145
Query: 128 FPQMSPSH---SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKY 182
Q++ H + +E Q+++ + G I +KVI+ + + +LV SE+ A W K
Sbjct: 146 ASQVAQLHGRTAAEERQQALQR----MVGQTIPLKVIEVDRDRNRLVLSERSATQEWRKA 201
Query: 183 S-----SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
+ + DI GR ++GAFI L DGL H+SE+SW + R++
Sbjct: 202 QKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREV 255
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L+ G EVRV V++ID E+ RI LS+++L+ +P
Sbjct: 256 LSPGQEVRVMVVEIDAERERIGLSLRRLQPNP 287
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 82 SQSRSSADWKAARAYK-----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ ++ +W+ A+ + + G I G++ G + G ++S
Sbjct: 190 SERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGLAHISELS-WQR 248
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 193
P++ + G + V V++ + E +++ S + W+ R ++ +
Sbjct: 249 VNHPREVLS------PGQEVRVMVVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVS 302
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF+ + + GL+H SE+ D RD+L G + ++I +D+
Sbjct: 303 GPVTNVAPFGAFVQIE-----EAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDK 357
Query: 249 EKSRITLSIKQ--LEEDPLLETLEKVIP 274
++ R+ LS++ +E ET E P
Sbjct: 358 QRQRMGLSLRHNGADESGATETPETPAP 385
>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 388
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 32/212 (15%)
Query: 75 SDANNRQ-------SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP 127
D NRQ + + + DW+ A G I +G++ G+N GGLLV+F + GF+P
Sbjct: 86 QDPENRQGDLVLSLTMVQVARDWEEAARLSAEGGIVQGQVIGYNKGGLLVQFNRIRGFVP 145
Query: 128 FPQMSPSH---SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKY 182
Q++ H + +E Q+++ + G I +KVI+ + + +LV SE+ A W K
Sbjct: 146 ASQVAQLHGRTAAEERQQALQR----MVGQTIPLKVIEVDRDRNRLVLSERSATQEWRKA 201
Query: 183 S-----SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
+ + DI GR ++GAFI L DGL H+SE+SW + R++
Sbjct: 202 QKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREV 255
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L+ G EVRV V++ID E+ RI LS+++L+ +P
Sbjct: 256 LSPGQEVRVMVVEIDAERERIGLSLRRLQPNP 287
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 82 SQSRSSADWKAARAYK-----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ ++ +W+ A+ + + G I G++ G + G ++S
Sbjct: 190 SERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGLAHISELS-WQR 248
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 193
P++ + G + V V++ + E +++ S + W+ R ++ +
Sbjct: 249 VNHPREVLS------PGQEVRVMVVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVS 302
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF+ + + GL+H SE+ D RD+L G + ++I +D+
Sbjct: 303 GPVTNVAPFGAFVQIE-----EAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDK 357
Query: 249 EKSRITLSIKQ 259
++ R+ LS+++
Sbjct: 358 QRQRMGLSLRR 368
>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 391
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 111/200 (55%), Gaps = 26/200 (13%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH---SCKEPQKS 143
+ DW+ A G I K+ GFN GGLLV+F + GF+P Q++ H + E Q++
Sbjct: 106 AKDWEVAEQLFHDGGITRCKVIGFNKGGLLVQFNRIRGFVPSSQVAQLHGRTAADERQQA 165
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR- 195
+ + + I +KVI+ + E +LV SE+ A W K + + D+ VGR
Sbjct: 166 LQK----MVNQEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGRV 221
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
++GAFI L DGL H+SE+SW + R++L G EV+V V++IDRE+
Sbjct: 222 NQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERE 275
Query: 252 RITLSIKQLEEDPLLETLEK 271
RI LSI+QL+ +P ET+++
Sbjct: 276 RIGLSIRQLQNNP-WETIDQ 294
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 82 SQSRSSADWKAARAYK-----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ ++ +W+ A+ ++ + G + G++ G + G ++S
Sbjct: 191 SERAATQEWRKAQKHRLLTELQPGDVLVGRVNQLTNFGAFIDLGGADGLAHISELS-WQR 249
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFV 193
P++ + G + V V++ + E +++ S + + W R + +
Sbjct: 250 VNHPREVLQ------PGQEVKVVVVEIDRERERIGLSIRQLQNNPWETIDQRYTLGQLVT 303
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF+ + + GL+H SE+ D RDIL G V +VI +DR
Sbjct: 304 GPVTNVTPFGAFVQVE-----EAVEGLIHASELDADPQAQPRDILQPGQIVTARVISLDR 358
Query: 249 EKSRITLSIKQLEED 263
++ R+ LS++++ E+
Sbjct: 359 QRQRMGLSLRRIGEN 373
>gi|159475150|ref|XP_001695686.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158275697|gb|EDP01473.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 360
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQ 141
SQ+ S + A + KE G E KI G N GG++V+F L GF+P+ ++ P+
Sbjct: 73 SQAAISEAYIKAASSKERGETVEVKIVGQNEGGVMVQFGPLRGFMPYNKLDPAR------ 126
Query: 142 KSIHEIAKG----LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG--- 194
+ A G L G I ++I A+ K+LV SE+ + RV+ D+ G
Sbjct: 127 --LRACANGDLTKLIGQQIKARIITADIARKELVLSERQVAAAEALGRVSEGDVIEGVVT 184
Query: 195 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAFI ++ GL + GLVH SEV+W I + ++L G EVR KV+ +D R
Sbjct: 185 GVEDYGAFIQIK---GLPDVFGLVHKSEVTWARILTVDEVLKLGQEVRAKVLSVDVANCR 241
Query: 253 ITLSIKQLEEDPLLETLE 270
+ LSIKQL DPL +L+
Sbjct: 242 LALSIKQLTTDPLRMSLD 259
>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 397
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 20/197 (10%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
+ DW+ A G I K+ GFN GGLLV+F + GF+P Q++ H + +
Sbjct: 106 AKDWEVAEQLFRDGGITRCKVIGFNKGGLLVQFNRIRGFVPASQVAQLHGRTAADERQYA 165
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR---- 195
+ K + I +KVI+ + E +LV SE+ A W K + + D+ VG+
Sbjct: 166 LQK-MINQEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGKVNQL 224
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++GAFI L DGL H+SE+SW + R++L G EV+V V++IDRE+ RI
Sbjct: 225 TNFGAFIDLGGADGL------AHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIG 278
Query: 255 LSIKQLEEDPLLETLEK 271
LSI+QL+++P ET+++
Sbjct: 279 LSIRQLQDNP-WETIDQ 294
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 82 SQSRSSADWKAARAYK-----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ ++ +W+ A+ ++ + G + GK+ G + G ++S
Sbjct: 191 SERAATQEWRKAQKHRLLTELQPGDVLVGKVNQLTNFGAFIDLGGADGLAHISELS-WQR 249
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFV 193
P++ + G + V V++ + E +++ S + D W R + +
Sbjct: 250 VNHPREVLQ------PGQEVKVVVVEIDRERERIGLSIRQLQDNPWETIDQRYTLGQLVT 303
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF+ + + GL+H SE++ D RD+L G V +VI +DR
Sbjct: 304 GPVTNVTPFGAFVQVE-----EAVEGLIHASELTADPQAQPRDVLQPGQIVTARVISLDR 358
Query: 249 EKSRITLSIKQLEED 263
++ R+ LS++++ +D
Sbjct: 359 QRQRMGLSLRRINDD 373
>gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG-6]
gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG6]
Length = 381
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 25/193 (12%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH---SCKEPQKS 143
+ DW+ A G I K+ GFN GGLLV+F + GF+P Q++ H + +E Q++
Sbjct: 98 AKDWETAEQMFGEGGIVRCKVIGFNKGGLLVQFNRIRGFVPASQVAQLHGRTAAEERQQA 157
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR- 195
+ + + I +KVI+ + E +LV SE+ A W K + + D+ GR
Sbjct: 158 LQK----MVNQEIPLKVIEVDRERNRLVLSERSATQEWRKAQKQRLLTELQPGDVLSGRV 213
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
++GAFI L DGL H+SE+SW + R++L+ G EV+V V++IDR++
Sbjct: 214 NQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREVLSPGQEVKVVVVEIDRDRE 267
Query: 252 RITLSIKQLEEDP 264
RI LS++QL+ +P
Sbjct: 268 RIGLSLRQLQANP 280
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 82 SQSRSSADWKAARAYK-----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ ++ +W+ A+ + + G + G++ G + G ++S
Sbjct: 183 SERSATQEWRKAQKQRLLTELQPGDVLSGRVNQLTNFGAFIDLGGADGLAHISELS-WQR 241
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 193
P++ + G + V V++ + + +++ S + W+ R ++ +
Sbjct: 242 VNHPREVLS------PGQEVKVVVVEIDRDRERIGLSLRQLQANPWDTIDQRYSLGQLVS 295
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF+ + + GL+H SE+ D RD+L G +V KVI +DR
Sbjct: 296 GPVTNVTPFGAFVQVE-----DAVEGLIHASELDVDPQTQPRDVLQPGQQVTAKVISLDR 350
Query: 249 EKSRITLSIKQLEE 262
++ R+ LS++++ E
Sbjct: 351 QRQRMGLSLRRVSE 364
>gi|255073571|ref|XP_002500460.1| predicted protein [Micromonas sp. RCC299]
gi|226515723|gb|ACO61718.1| predicted protein [Micromonas sp. RCC299]
Length = 294
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 16/196 (8%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAK-GLTGS 154
E G G+++ N GGL++R F+ FLP QM+ S + + K G
Sbjct: 5 EKGEPVSGRVEVANRGGLILRIFNGRFRAFLPLSQMTSSRTLDVKRSRKKNAPKSAQVGK 64
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-----VEDIFVGRDYGAFIHLRFPDGL 209
+I VKV N+ KK+V SE+ V + R+ + D+GAF+ L D
Sbjct: 65 VIEVKVTDVND--KKIVVSERALVQERGVKRLKPGVRASAQVVSLSDFGAFVELSQDDPQ 122
Query: 210 Y-HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI----DREKSRITLSIKQLEEDP 264
L GL+H+SE+SW + RDIL GDEV VKV+ + R +R+T S+KQL+ DP
Sbjct: 123 APRLEGLIHISELSWSRVAHPRDILRVGDEVDVKVLDVAPAEGRRPARVTFSLKQLQADP 182
Query: 265 LLETLEKVIPQGL-EP 279
LLETL+ ++P + EP
Sbjct: 183 LLETLDTIMPVAMPEP 198
>gi|406997617|gb|EKE15647.1| RNA binding S1 protein [uncultured bacterium]
Length = 447
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 21/200 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK---EPQKSIHE 146
W + G I K+ N GGL+V + GFLP Q+S H + + I E
Sbjct: 137 WDDLDSKMTIGDIISTKVLDANKGGLMVEVNGITGFLPVSQLSGEHYPRVEDGDKNKILE 196
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-----DYG 198
+ K + G I V++I A+++ +KL+ SE+ A K S+++V DI G D+G
Sbjct: 197 LLKKIIGQEIRVRIIDADKDSEKLIVSERAASSEKEKEVISKLDVGDIIEGEISGVVDFG 256
Query: 199 AFIHLRFP-------DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
AF+ P DG +L GLVH+SE++W LI++ RDI+ GD+VR K+I ID +
Sbjct: 257 AFVKFPSPIKNSAGNDG-DNLEGLVHISELAWQLIENPRDIVKTGDKVRAKIIGID--DT 313
Query: 252 RITLSIKQLEEDPLLETLEK 271
RI+LS+K L +DP E +K
Sbjct: 314 RISLSMKALAKDPWSEIEKK 333
>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 397
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
DW+ A+ E+G I E + G+N GGLLV+ + GF+P Q+ HS + +
Sbjct: 104 DWQEAQTMLENGQIIEAGVVGYNKGGLLVQVGRVRGFVPASQVVNLHSRTGTEGQQSAMT 163
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVED-----IFVGR-----D 196
K + G I +KVI+ + + +LV SE+ A+ W + +E + GR
Sbjct: 164 K-MVGQNIPLKVIEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEPGAVVTGRVNQLTP 222
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAFI L DGL H+SE+SW + R++L G EV+V V+++DR++ RI LS
Sbjct: 223 FGAFIDLGGADGL------AHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLS 276
Query: 257 IKQLEEDP 264
+++L+ DP
Sbjct: 277 LRRLQPDP 284
>gi|406985724|gb|EKE06462.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 334
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 102/187 (54%), Gaps = 20/187 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP---QKSIHE 146
W + +SG KI N GGL+V+ +LV FLP Q+SP + + P ++ I E
Sbjct: 6 WTKMKGLVDSGLAVPAKILQANKGGLMVQVDALVSFLPVSQLSPENYPRVPGGDKERILE 65
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV----NVEDIFVGR-----DY 197
K L G + VKVI +++ +KL+ SEK A+W V V D G +
Sbjct: 66 HLKALIGKTLQVKVIDVDQKDEKLIVSEK-AIWEDDQKAVLESYKVGDTVDGEVSALTSF 124
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAFI +F +GL GLVH+SE+ W I+ RD+L G +V+ ++ ID KS+I LSI
Sbjct: 125 GAFI--KFGEGL---EGLVHISEIVWQRIEHPRDVLKVGQKVKAQI--IDLNKSKIYLSI 177
Query: 258 KQLEEDP 264
K+L +DP
Sbjct: 178 KRLVQDP 184
>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
isolate TM7c]
Length = 358
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 19/188 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ A ESG + + + N GGLLV + + GFLP Q+S H + EI +
Sbjct: 96 WEEVSARLESGEVIDIQPYDANRGGLLVEYEGVRGFLPVSQLSAEHYPRVGSSDKDEILQ 155
Query: 150 ---GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-------NVEDIFVGR-DYG 198
L G + V+++ A+ + KL+FSEK+AV + + R VE + G D+G
Sbjct: 156 RLNNLIGKTMKVRILDADRKSNKLIFSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFG 215
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+++ + GLVH+SE+SW+ + + D + G ++ K+I ID K R++LS+K
Sbjct: 216 VFVNVE------GIEGLVHISEISWERVNNPSDYVKTGQTIKAKIIAID--KDRLSLSMK 267
Query: 259 QLEEDPLL 266
QL +DP L
Sbjct: 268 QLTQDPWL 275
>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 400
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 24/218 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+A + Y E G I +++ +N GGLLV + GF+P Q+S E QK
Sbjct: 119 KARQEKSWRALQEYYERGEIIYARVKNYNKGGLLVDLDGVRGFVPASQVSSVSRASEAQK 178
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR 195
E+A+ L + +KVI+ N +L+ SE+ A+ ++ + D+ G
Sbjct: 179 Q-SEMAR-LVNVELPLKVIEINRNRNRLILSERQALVETRETKKDELLASLQEGDVREGV 236
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+G F+ + DGL VH+SE+SW ++ ++L GD+V+V ++ ID E+
Sbjct: 237 VSSVCDFGVFVDIGGADGL------VHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHER 290
Query: 251 SRITLSIKQLEEDPLLETLEKV----IPQGLEPYLKSF 284
RI LSIK+ + +P E+ I +G L SF
Sbjct: 291 KRIALSIKRTQSEPWTRVAERYQLGQIVEGTVTQLASF 328
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + EG + G+ V G + ++S S K P + + G +
Sbjct: 228 QEGDVREGVVSSVCDFGVFVDIGGADGLVHLSEISWSR-VKHPSEVLK------VGDKVK 280
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V ++ + E K++ S K W + + R + I G +GAF+ R DG+
Sbjct: 281 VSILNIDHERKRIALSIKRTQSEPWTRVAERYQLGQIVEGTVTQLASFGAFV--RIEDGV 338
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+HVSE+ + IQ RD+L+EG V+ ++I+ID + R+ LS++ L+++P
Sbjct: 339 ---EGLIHVSEMGDERIQHPRDVLSEGQVVQARIIRIDPARKRMGLSLR-LQQEP 389
>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
Length = 691
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK R E+ EG + G N GGL R + GF+P Q++P + K +K
Sbjct: 372 NWKNLREAYENDQTVEGDVTGANKGGLTARVMGINGFVPASQIAP-YFVKNFKK------ 424
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 200
G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 425 --FVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
I + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 IEIG------SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 261 EEDPLLE 267
E P E
Sbjct: 537 LEKPFAE 543
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + GK+ G + SL G L ++ + + P+ ++ G I
Sbjct: 464 EEGQVITGKVARLTDFGAFIEIGSLDGLLHVSDIAWTR-VEHPKDVLN------IGDDIE 516
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ + +G+
Sbjct: 517 VKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNLLDFGAFVEV--SEGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+HVSE+SWD ++ D LN GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 575 ---EGLIHVSEISWDHVEKPSDELNVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 411
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 20/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E+G I E K+ +N GGLLV + GF+P Q+S E QK
Sbjct: 124 RARQEKSWRRLQQCYETGEIIEAKVINYNKGGLLVNLDGVRGFVPSSQVSGIGRGSEAQK 183
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR 195
E+A+ + G +++KVI+ N +L+ SE+ A + R + D+ G
Sbjct: 184 Q-SEMAR-MVGQTLALKVIEINRNRNRLILSERQAAMDVREGRKGELLSALKEGDVREGV 241
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAF+ + DGL VH+SE+SW ++ +IL GD+V+V V+ ID E+
Sbjct: 242 VTSVCDFGAFVDIGGADGL------VHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNER 295
Query: 251 SRITLSIKQLEEDP 264
RI LS+K+ + +P
Sbjct: 296 KRIALSLKRTQHEP 309
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A KE G + EG + G V G + ++S S K P EI K G
Sbjct: 231 ALKE-GDVREGVVTSVCDFGAFVDIGGADGLVHLSELSWSR-VKHPS----EILK--PGD 282
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFP 206
+ V V+ + E K++ S K W R ++ + G +GAF+ R
Sbjct: 283 KVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYHIGQMVEGVVTQLAPFGAFV--RIE 340
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DG+ GL+HVSE+ +Q RD+L EGD V+ ++I+ID + RI LS++Q +D +
Sbjct: 341 DGV---EGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRIDPARKRIGLSMRQSSDDQI 396
>gi|302838251|ref|XP_002950684.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
nagariensis]
gi|300264233|gb|EFJ48430.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
nagariensis]
Length = 356
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 106 KIQGFNGGGLLVRFFSLVGFLPFPQMSPSH--SCKEPQKSIHEIAKGLTGSIISVKVIQA 163
K+ N GG++V++ + GF+P+ QM P+ +C S LTG + +V+ A
Sbjct: 97 KVVSQNEGGVIVQYGPVRGFIPYNQMDPARLRACANGDLST------LTGQQLKARVVTA 150
Query: 164 NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHV 218
+ K+LV SE+ + R+ + DYGAF+ ++ G+ + GLVH
Sbjct: 151 DASRKELVLSERQVAAAEALRRIEPGAVLTCVVTAVEDYGAFVQVK---GMPEVVGLVHK 207
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
SEVSWD I + +++ G EV KV+ +D R+TLS+KQ+ DPL +L+
Sbjct: 208 SEVSWDRIMTVDQVVSIGQEVVAKVLSVDANNVRLTLSMKQMSTDPLRLSLD 259
>gi|407003818|gb|EKE20342.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 404
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 19/199 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK---EPQKSIHE 146
W + ++ + K+ N GGL+V + GF+P Q+S H + + I E
Sbjct: 136 WDDLESKRDQMGVVTTKVLDANKGGLMVEVNGITGFIPVSQLSSEHYPRVEDGDKNKILE 195
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-----DYG 198
+ K L G + V+++ A+ E +KL+ SE+ A K S++ D+ G D+G
Sbjct: 196 LLKKLVGKEMLVRILDADRESEKLIVSERAASSEKEKEVISKLQAGDVIEGEISGVVDFG 255
Query: 199 AFIHLRFPDGLY------HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
AF+ P + L GLVH+SE++W LI D R ++ GD+V+ K+I ID +R
Sbjct: 256 AFVKFLPPAKMASDRESDKLEGLVHISELAWQLIDDPRTVVKTGDKVKAKIIGID--DTR 313
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+LS+K L +DP E EK
Sbjct: 314 ISLSMKALAKDPWSEIAEK 332
>gi|406920096|gb|EKD58220.1| RNA binding S1 protein [uncultured bacterium]
Length = 407
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK---EPQKSIHE 146
W A +++ + K+ N GGL+V + GF+P Q+S H + + I E
Sbjct: 135 WDDLEAKRDAMGVVTTKVLDANKGGLMVEVNGITGFVPVSQLSSEHYPRVEDGDKNKILE 194
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-----DYG 198
+ K L G I V+++ A+ E +KL+ SE+ A K S++ D G D+G
Sbjct: 195 LLKKLVGKEILVRILDADRETEKLIVSERAASSEKEKEVISQLKAGDTIEGEISGVVDFG 254
Query: 199 AFIHLRFPDGLY------HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
AF+ P L GLVH+SE++W LI D R I+ GD+V+ ++I ID +R
Sbjct: 255 AFVKFLPPAKADSDRESDKLEGLVHISELAWQLIDDPRSIVKTGDKVKARIIGID--DTR 312
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+LS+K L +DP E EK
Sbjct: 313 ISLSMKALAKDPWSEIAEK 331
>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
Length = 692
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK R E+ EG I G N GGL R + GF+P Q++P + K +K
Sbjct: 372 NWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAP-YFVKNFKK------ 424
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 200
G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 425 --FVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 VEI------GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 261 EEDPLLE 267
E P E
Sbjct: 537 LEKPFAE 543
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + GK+ G V SL G L ++ + + P+ ++ G I
Sbjct: 464 EEGQVITGKVARLTDFGAFVEIGSLDGLLHVSDIAWTR-VEHPKDVLN------IGDDIE 516
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ + +G+
Sbjct: 517 VKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV--SEGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+HVSE+SW+ ++ D L GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 575 ---EGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
Length = 320
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 22/187 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + KI N GG LVR L GF+P +S +EP++
Sbjct: 111 WERVRKLQTEDQTVRAKIFAVNRGGALVRIEGLRGFIPGSHLS----TREPKEE------ 160
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +++ + +GR YGAFI +
Sbjct: 161 -LIGEELPLKFLEVDEERNRLVLSHRRALVERRMNKLEAGQVVIGRVRGIKPYGAFIDI- 218
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I+ + N GDEV+V VI +D E+ RI+LS KQLEE P
Sbjct: 219 -----GGVSGLLHISEISHDHIETPHSVFNVGDEVKVMVIDLDAERGRISLSTKQLEETP 273
Query: 265 LLETLEK 271
T +K
Sbjct: 274 GAMTQDK 280
>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 692
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK R E+ EG I G N GGL R + GF+P Q++P + K +K
Sbjct: 372 NWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAP-YFVKNFKK------ 424
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 200
G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 425 --FVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 VEI------GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 261 EEDPLLE 267
E P E
Sbjct: 537 LEKPFAE 543
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + GK+ G V SL G L ++ + + P+ ++ G I
Sbjct: 464 EEGQVITGKVARLTDFGAFVEIGSLDGLLHVSDIAWTR-VEHPKDVLN------IGDDIE 516
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ + +G+
Sbjct: 517 VKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV--SEGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+HVSE+SW+ ++ D L GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 575 ---EGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|406986413|gb|EKE07010.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 343
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 23/219 (10%)
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSAD---WKAARAYKESGFIYEGKIQGFNGGGLLV 117
K+ +L+D ++ + R + + W+ + ++G + + KI N GGL++
Sbjct: 64 KVGDEVEATVLEDENENGEMELSFRVAGNRLVWERMSEHVKAGDVIKAKILAANKGGLML 123
Query: 118 RFFSLVGFLPFPQMSPSHSCK---EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ +LVGF+P Q++P++ + + I E + G I VKVI A+ + +KL+FSE
Sbjct: 124 QSDALVGFMPVSQLNPNNYPRVQGGDKNRILEHLRKFIGETIKVKVINADMDDEKLIFSE 183
Query: 175 KDAVWNKYSSRV----NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL 225
K+ VW + V V D+ G +GAFI +L GLVH+SE+ W
Sbjct: 184 KE-VWEEEQKNVLDSYKVGDVVEGEVSALTSFGAFIKFG-----KNLEGLVHISEIVWQR 237
Query: 226 IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
I R++L GD+++ ++ ID KS+I LSIK+L +DP
Sbjct: 238 ISHPREVLKVGDKIKAQI--IDLNKSKIYLSIKRLVDDP 274
>gi|406885585|gb|EKD32746.1| RNA binding S1 protein [uncultured bacterium]
Length = 374
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 21/171 (12%)
Query: 106 KIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI---AKGLTGSIISVKVIQ 162
KI N GGL+V+ + +GFLP Q++P H + H+I K GS I V+++
Sbjct: 119 KILEANKGGLIVKLQNTIGFLPVSQLAPEHYPRVTGGDKHKILERIKEFVGSEIEVRILD 178
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRV----NVEDIFVGR-----DYGAFIHLRFPDGLYHLT 213
NE KL+ SEK A+W + V V DI G D+GAF+ RF DGL
Sbjct: 179 LNENENKLILSEK-ALWEEKQKNVIEKYKVGDIIEGEVTALADFGAFV--RF-DGL---E 231
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+H+SE++W I RDIL G V+ ++I + E S+I LS+K+L +DP
Sbjct: 232 GLIHISEIAWQRIDHPRDILKAGQTVKAEIIGL--EGSKIFLSMKKLVDDP 280
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGLTG 153
G I EG++ G VRF L G + +++ P K Q EI GL G
Sbjct: 208 GDIIEGEVTALADFGAFVRFDGLEGLIHISEIAWQRIDHPRDILKAGQTVKAEII-GLEG 266
Query: 154 SIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRD-YGAFIHLRFPDGLYHL 212
S I + MKKLV V KY VE + + + +G F+ L + +
Sbjct: 267 SKIFLS-------MKKLVDDPWKDVEKKYKIGDKVEGLIIKSNPFGFFVELD-----HDI 314
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GL H+SE+S I+D+ +I GD+ VI I+ ++ R+ LS+K
Sbjct: 315 HGLAHMSELSDKPIKDLSEIAAIGDKKTFTVITIEPQEHRLGLSLK 360
>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
Length = 403
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 20/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E+G + E ++ +N GGLLV + GF+P Q+S + QK
Sbjct: 126 RARQEKSWRRLQQCYETGEVIEARVVNYNKGGLLVNLDGVRGFVPSSQVSGISRGSDTQK 185
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR 195
E+A+ + G + +KVI+ N +L+ SE+ A + R + D+ G
Sbjct: 186 Q-SEMAR-MVGQTLMLKVIEINRNRNRLILSERQAAMDMREGRKGELLSALKEGDVREGI 243
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAF+ + DGL VH+SE+SW I+ ++L GD+V+V V+ ID E+
Sbjct: 244 VTSVCDFGAFVDIGGADGL------VHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNER 297
Query: 251 SRITLSIKQLEEDP 264
RI LS+K+ + +P
Sbjct: 298 KRIALSLKRTQHEP 311
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 27/196 (13%)
Query: 82 SQSRSSADWKAAR------AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH 135
S+ +++ D + R A KE G + EG + G V G + ++S S
Sbjct: 214 SERQAAMDMREGRKGELLSALKE-GDVREGIVTSVCDFGAFVDIGGADGLVHLSEISWSR 272
Query: 136 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIF 192
K P E+ K G + V V+ + E K++ S K W R + +
Sbjct: 273 -IKHP----GEVLK--PGDKVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYQIGQMV 325
Query: 193 VG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
G +GAF+ R DG+ GL+HVSE+ +Q RD+L EGD V+ ++I+ID
Sbjct: 326 EGVVTQLAPFGAFV--RIEDGV---EGLIHVSEMGDGRVQHPRDVLQEGDVVQARIIRID 380
Query: 248 REKSRITLSIKQLEED 263
+ RI LS++ +D
Sbjct: 381 PARKRIGLSMRPPSDD 396
>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 399
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+A + E G I +++ +N GGLLV + GF+P Q+S E QK
Sbjct: 118 KARQEKSWRALQECYERGDIIYARVKNYNKGGLLVDLDGVRGFVPASQVSSISRVSETQK 177
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN----------VEDIF 192
E+A+ L + +KVI+ N +L+ SE+ A+ S+ + V D
Sbjct: 178 Q-SEMAR-LVNVELPLKVIEINRNRNRLILSERQALVETRESKKDELLTSLREGDVRDGV 235
Query: 193 VGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
V D+G F+ + DGL VH+SE+SW ++ ++L GD+V+V ++ ID E+
Sbjct: 236 VSSVCDFGVFVDIGGADGL------VHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHER 289
Query: 251 SRITLSIKQLEEDPLLETLEKV----IPQGLEPYLKSF 284
RI LSIK+ + +P E+ I +G L SF
Sbjct: 290 KRIALSIKRTQSEPWTRVAERYQLGQIVEGTITQLASF 327
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + G+ V G + ++S S K P E+ K G + V
Sbjct: 229 GDVRDGVVSSVCDFGVFVDIGGADGLVHLSEISWSR-VKHP----GEVLK--VGDKVKVA 281
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
++ + E K++ S K W + + R + I G +GAF R DG+
Sbjct: 282 ILNIDHERKRIALSIKRTQSEPWTRVAERYQLGQIVEGTITQLASFGAF--ARIEDGV-- 337
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GL+H+SE+ + IQ R++L+EG V+ ++I+ID + R+ LS++
Sbjct: 338 -EGLIHISEMGDERIQHPREVLSEGQVVQARIIRIDPARKRMGLSLR 383
>gi|406945079|gb|EKD76682.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 18/200 (9%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
Q+ W + ++ES + E I N GGL++R + GFLP Q+S H +
Sbjct: 97 QAGHKKAWDKLKVFRESHEVVEANIVDANKGGLIIRVGRVSGFLPVSQLSVEHYPRVEGG 156
Query: 143 SIHEIAKGLTGSI---ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR- 195
+ +I + L G I VKVI +E +KL+ SEK A + +++ V D G+
Sbjct: 157 NKAKILERLQGYITQNFKVKVIDVDEVEEKLIVSEKMAKAEQQQEKISQYKVGDKVSGKI 216
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D+GAF+ +L GLVH+SE++W I D +D + GDEV ++I ID
Sbjct: 217 TGVVDFGAFVEFG-----ENLEGLVHISEIAWQRIDDPKDYVKVGDEVNAEIISIDN--G 269
Query: 252 RITLSIKQLEEDPLLETLEK 271
+I+LSI+ L +DP + E+
Sbjct: 270 KISLSIRNLIKDPWVNVAER 289
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 105 GKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GKI G G V F +L G + +++ +P+ + ++ + IIS+ +
Sbjct: 214 GKITGVVDFGAFVEFGENLEGLVHISEIA-WQRIDDPKDYV-KVGDEVNAEIISIDNGKI 271
Query: 164 NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHV 218
+ ++ L+ KD W + R + D G +GAF+ L + GL H+
Sbjct: 272 SLSIRNLI---KDP-WVNVAERYKINDTVKGLVLKLNPFGAFVELD-----RDIHGLAHI 322
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
SE+S+ + +IL GD KVI I+ K R+ LS K L E ET
Sbjct: 323 SELSYRKLSSPSEILKIGDVYDFKVISIEPGKHRLGLSYKSLHEQKPAET 372
>gi|375091621|ref|ZP_09737910.1| ribosomal protein S1 [Helcococcus kunzii ATCC 51366]
gi|374563143|gb|EHR34465.1| ribosomal protein S1 [Helcococcus kunzii ATCC 51366]
Length = 402
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 33/207 (15%)
Query: 73 DSSDANNRQSQSRSSA--DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
D + N S SR +WK E+G + + ++G N GGL+V+ + GF+P Q
Sbjct: 81 DDGEGNVSLSTSRVEGLKNWKKLMDAYENGEVVKSSVKGSNSGGLVVKVMGINGFIPASQ 140
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYS 183
++ ++ K + I G + KVI +E+ K++V S + D VW
Sbjct: 141 IT-TYFVKNFDQYI--------GKELDTKVINIDEKKKRVVLSSRALQEEKLDTVWETLI 191
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
I G+ D+GAF+ L D GL+H+S++SWD I+ D L G E
Sbjct: 192 PDA----IVTGKVVRMVDFGAFVDLGGVD------GLIHISDISWDRIEKPSDALEVGQE 241
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPL 265
V VK++K +REK+R++L +KQL E P
Sbjct: 242 VEVKILKANREKNRVSLGLKQLTEKPF 268
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 153 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-DYGAFIHLR 204
G + VK+++AN E +K+L D N + VE V D+GAF+ L+
Sbjct: 239 GQEVEVKILKANREKNRVSLGLKQLTEKPFDVFLNNHKVGDVVEGEVVNLLDFGAFLKLK 298
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVS++S + ++ D+LN GD++ VK+++ID E RI+LS + L E
Sbjct: 299 -----EGVEGLVHVSQISTEHVEKPSDVLNVGDKMEVKILEIDEENQRISLSKRALMEPK 353
Query: 265 LLETLEKV 272
E KV
Sbjct: 354 QTEKENKV 361
>gi|406925750|gb|EKD62158.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 368
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK------- 142
WK A +G + E I +N GGLL L GF+P + SH + K
Sbjct: 106 WKGAEDALATGSVLEATIIEYNKGGLLTDCLGLRGFIPLSHLDRSHFANDIAKFAAGSEA 165
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGRDYGAF 200
+ E K L G +I VKVI+ + + V SEKDA+ ++ S +++I G
Sbjct: 166 ELKESLKALAGKVIKVKVIELDPLKNRFVLSEKDALSTYSDESREKRLQEIAAGTTLEGI 225
Query: 201 IHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+ P G++ + GLVH+SE++W+ + + + G V+V V+ +D + ++ LS
Sbjct: 226 VTGIMPFGVFIDLDGVEGLVHISEIAWEKVNNPSSYFSVGQTVKVMVLGVDDQSKKLALS 285
Query: 257 IKQLEEDPLLETLEKVIPQG 276
+K+L +P ET+EK P G
Sbjct: 286 VKRLTPNP-WETVEKSYPVG 304
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-VGRDYGAFIHLRFPDGLY- 210
G + V V+ +++ KKL S K N + + VE + VG + P G +
Sbjct: 265 GQTVKVMVLGVDDQSKKLALSVKRLTPNPWET---VEKSYPVGTKVKGIVSKVVPFGAFV 321
Query: 211 ----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
L GL+HVSE + L EGDEV VI++D ++ LS +
Sbjct: 322 TIEKGLDGLIHVSEAAGPL--------KEGDEVEAIVIQVDGTNQKLALSTR 365
>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
Length = 402
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E G + ++ +N GGLLV + GF+P Q++ E QK
Sbjct: 118 KARQEKSWRMLQTAFERGDVITARVVNYNKGGLLVNLDGVRGFVPASQVNGISRGPETQK 177
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVW-------NKYSSRVNVEDIFVGR 195
++A+ + + + +KVI+ N +L+ SE+ AV ++ SR+ D+ G
Sbjct: 178 Q-SDMAR-MVNTDLQLKVIEINRNRNRLILSERQAVQEARETKKDELLSRLKEGDVRTGT 235
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAF+ + DGL VH+SE+SW ++ ++L+ GD+V+V ++ +D ++
Sbjct: 236 ISSVCDFGAFVDIGGADGL------VHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDR 289
Query: 251 SRITLSIKQLEEDPLLETLEKV----IPQGLEPYLKSF 284
RI LSIK+ + +P E+ I +G L SF
Sbjct: 290 KRIALSIKRTQSEPWTRAGERYQLGQIVEGTITQLASF 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G I G V G + ++S S K P + +H G + V
Sbjct: 229 GDVRTGTISSVCDFGAFVDIGGADGLVHLSEISWSR-VKHPSEVLH------PGDKVQVS 281
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
++ + + K++ S K W + R + I G +GAF R DG+
Sbjct: 282 ILSVDHDRKRIALSIKRTQSEPWTRAGERYQLGQIVEGTITQLASFGAF--ARIEDGI-- 337
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GL+H+SE+ + IQ ++++ EGD ++ ++I+ID + R+ LS++
Sbjct: 338 -EGLIHISEMGDERIQHPKEVIAEGDTIQARIIRIDPARKRMGLSLR 383
>gi|133872|sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor
gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
Length = 411
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 72 DDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
DDS + RQ Q + W+ R + + +GKI G N GG++ L GF+PF Q+
Sbjct: 158 DDSLILSLRQIQYELA--WERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQI 215
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
S S +E L I +K ++ +EE +LV S + A+ + +++ + +
Sbjct: 216 SSKSSAEE-----------LLEKEIPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSV 263
Query: 192 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G + YGAFI + + GL+HVS++S D + DI +L GD ++V ++
Sbjct: 264 VTGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSH 317
Query: 247 DREKSRITLSIKQLEEDP 264
DRE+ R++LS K+LE P
Sbjct: 318 DRERGRVSLSTKKLEPTP 335
>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
Length = 436
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 23/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R +E ++ N GG+LV+F GF+P Q PS + +
Sbjct: 218 WQRIRQLQEEDITVTVSVESVNKGGMLVKFGIYDGFIPVSQFGPSITPDN--------ME 269
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFI 201
L G + VK ++ +EE ++LVFS K A V N V D+ G + YGAFI
Sbjct: 270 SLVGFELQVKFLEVDEEAERLVFSHKRASSTVSNDIQG-FKVGDVVAGVVQSVKPYGAFI 328
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L +TGL+HVS++S D + + IL EGD+++V ++ DRE+ R+TLS K+LE
Sbjct: 329 DLG------GVTGLLHVSQISHDRVLVLDKILQEGDKIKVMILSQDRERGRVTLSTKKLE 382
Query: 262 EDP 264
P
Sbjct: 383 PTP 385
>gi|412990262|emb|CCO19580.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 437
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 32/227 (14%)
Query: 78 NNRQSQSRSSADWKAARAYK------ESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFP 129
NN +S++ S D ++A + ESG GK++ N GGL++R FLP
Sbjct: 96 NNVESKNESQKDKESAELKRDLMKALESGKKVTGKVEAVNRGGLILRVMKNKYRAFLPKS 155
Query: 130 QMSPSHS--CKEPQKSI--HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
QM S CK + + E+ K G++I VK ++ K++V SEK + +
Sbjct: 156 QMRSSRLKFCKTTKAELTEAEVMKQQIGNLIDVKFVEVTP--KRVVCSEKSLIQENAEKK 213
Query: 186 VNV---EDIFVGR--DYGAFIHL----------RFPDGLYH---LTGLVHVSEVSWDLIQ 227
+ V + + V D+GAF+ + + D L L GL+H+SE+SW+ +
Sbjct: 214 LPVGTQQRVVVTNLSDFGAFVEVINNDNNSSSSQEQDQLLSPVGLEGLIHISELSWNKVA 273
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
RD+ GDE+ VKV+++ R+ S KQ+ +DPL+ETL+ ++P
Sbjct: 274 HPRDVCRVGDELEVKVLEVANSGQRVNFSAKQMLDDPLMETLDTIMP 320
>gi|407004109|gb|EKE20559.1| RNA binding S1 protein [uncultured bacterium]
Length = 460
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 23/202 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH--SCKEPQKS-IHE 146
W+ + K++ + ++ N GGL+V + GFLP Q++ H ++ K+ I E
Sbjct: 126 WEDLESKKDNEEAVDTRVLDANKGGLMVEINGIGGFLPVSQLASEHYPRVEDGNKNKILE 185
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-----DYG 198
K L G + VK+I + +KL+ SEK A+ K SR+ D G D+G
Sbjct: 186 KLKRLVGQTLLVKIIDTYRDEEKLIVSEKAAMSEKEQVMISRLKEGDTIEGEVSGVVDFG 245
Query: 199 AFIHLRFPDGLYH---------LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
AF+ P G+ L GLVH+SE++W LI + R+I+ GD+++ K+I ID
Sbjct: 246 AFVKF-LPAGVKEGDDSIDGDKLEGLVHISELAWQLIDNPREIIKVGDKIKAKIIGID-- 302
Query: 250 KSRITLSIKQLEEDPLLETLEK 271
++RI+LSI+ L +DP E K
Sbjct: 303 EARISLSIRALAQDPWKEAQNK 324
>gi|356558105|ref|XP_003547348.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 399
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R K + +GK+ N GGL+ + L GF+PF Q+S + +E
Sbjct: 162 WERCRQLKAEDAVVKGKVINANKGGLVAQVEGLKGFVPFSQISSKSAGEE---------- 211
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L +I K ++ +EE +LV S + AV + ++ + + G + YGAFI +
Sbjct: 212 -LLEQVIPFKFVEVDEEQSRLVLSHRKAV-AESQGQLGIGSVVTGSVQSIKPYGAFIDI- 268
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 269 -----GGISGLLHVSQISHDRITDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTP 323
>gi|320160398|ref|YP_004173622.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319994251|dbj|BAJ63022.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 332
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 77 ANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
A+ + S +W AR Y E+ + + ++ GFN GGLLVR + GF+P +
Sbjct: 57 ASAKSSGISGGVNWARARQYLENDEVVKLEVYGFNRGGLLVRGEDIQGFVPVSHLVEMPC 116
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR- 195
++ + G I+S+KVI+ + +++VFSE+ A+ + R + G
Sbjct: 117 VPADEEQRRQSLANYVGRILSLKVIECEMQAERIVFSERAALAGEGKRRQLFSTLRPGEI 176
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
D+GAF+ L L GL+HVSE+SW +Q DIL G VR V+ +
Sbjct: 177 VNGTVTNVTDFGAFVD------LGGLEGLIHVSELSWGRVQHPTDILQVGVPVRALVLSV 230
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
E R+ LS+K+L +P ETL ++ G
Sbjct: 231 SAENGRVALSLKRLCPNP-WETLPQIYRPG 259
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
+GAF L+ + GL+H+S +S D +DI + G +V+V+++ +D E+ R+ L
Sbjct: 272 FGAFARLK-----EGVEGLIHISTMSLPDGEKDIEKFMKIGQKVQVRILHLDAERRRLGL 326
Query: 256 SIKQLE 261
+ Q+E
Sbjct: 327 GLVQIE 332
>gi|356532488|ref|XP_003534804.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 402
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R K + +GK+ N GGL+ + L GF+PF Q+S + +E
Sbjct: 165 WERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSKSAGEE---------- 214
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L +I K ++ +EE +LV S + AV + ++ + + G + YGAFI +
Sbjct: 215 -LLEHVIPFKFVEVDEEQSRLVLSHRKAV-AESQGQLGIGSVVTGSVQSIKPYGAFIDI- 271
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 272 -----GGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 326
>gi|406949320|gb|EKD79835.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 366
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 29/211 (13%)
Query: 74 SSDANNRQ----SQSRSSAD--WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP 127
+SD N R S R+ D W+ Y ++ + K N GG++VR+ L GF+P
Sbjct: 82 ASDENERGQILLSLKRAMFDKLWQMLEDYLKNETEVQVKTVELNRGGMIVRWQGLRGFVP 141
Query: 128 FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK-----DAVWNKY 182
Q S+ + L G I+VK I+ + E +L+FSEK A+ ++
Sbjct: 142 SSQFGASYQGN---------LQALVGKTINVKPIEVDREKNRLIFSEKHVSEAGAMASRE 192
Query: 183 SS--RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLT--GLVHVSEVSWDLIQDIRDIL 233
S+ V V + F G +GAF+ + G +T GLVH+SE+SW+ ++DI L
Sbjct: 193 SALKEVKVGNTFAGSVTGVLSFGAFVAVPVVAGKETITVEGLVHISEISWEKVEDIHKYL 252
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GD+V VKV+ ++ ++ LSIKQL+ DP
Sbjct: 253 KVGDKVEVKVLGVEEGTGKLNLSIKQLQSDP 283
>gi|383761456|ref|YP_005440438.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381724|dbj|BAL98540.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 414
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM--SPSHSCKE 139
S++ + DW+ A A +S I+E + +N GG++VR + GF+P Q+ +P+ + +E
Sbjct: 94 SRALAEKDWERAEALMQSQEIFECPVDAYNRGGVIVRLGQVRGFVPASQLVSAPASTGEE 153
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR-- 195
+ + L G + +KVI + + +L+ SE+ A+ W + ++ + G
Sbjct: 154 DADNRY---ASLMGEKLKLKVIDIDRKRNRLILSERLAMREWRRQQKEQLLDTLQEGAVL 210
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
D+GAF+ L DGL HL SE+SW+ + +++N GD V V++I ID
Sbjct: 211 EGVISSIADFGAFVDLGGADGLIHL------SELSWNRVTHPSEVVNIGDRVNVQIISID 264
Query: 248 REKSRITLSIKQLEEDP 264
E+ RI LS+++L P
Sbjct: 265 NERRRIGLSLRRLTPQP 281
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + EG I G V G + ++S + P + ++ G ++
Sbjct: 205 QEGAVLEGVISSIADFGAFVDLGGADGLIHLSELS-WNRVTHPSEVVN------IGDRVN 257
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V++I + E +++ S + W + V I GR ++GAF R D
Sbjct: 258 VQIISIDNERRRIGLSLRRLTPQPWEVIDNTYQVGQIVKGRITKLVNFGAFA--RLVD-- 313
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+SE++ + +++++EG+ +++I+I+ +K R+ LS+KQ + +P
Sbjct: 314 TGIEGLIHISELADRRVTHPKEVVSEGEVYDLRIIRIEGDKRRLGLSLKQAQPEP 368
>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
Length = 431
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 23/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W R +E ++ N GG+LV+F GF+P Q PS + + +
Sbjct: 217 WTRIRQLQEEDITVSVTVESVNKGGMLVKFGIYDGFIPVSQFGPSITA--------DSME 268
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFI 201
L G + VK ++ +EE ++LVFS K A V N V D+ G + YGAFI
Sbjct: 269 SLIGYELQVKFLEVDEEAERLVFSHKRASSMVTNDVQG-FKVGDVVAGVVQSVKPYGAFI 327
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L +TGL+HVS++S D + + IL EGD+++V ++ DR++ R+TLS K+LE
Sbjct: 328 DLG------GVTGLLHVSQLSHDRVLVLDKILAEGDKIKVMILSQDRDRGRVTLSTKKLE 381
Query: 262 EDP 264
P
Sbjct: 382 PTP 384
>gi|30692346|ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 177 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 226
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 227 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 283
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 284 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 459
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 31/239 (12%)
Query: 48 NLCPVGKFST--NAAKITPTTVNPILDDSSDANNRQSQS-------RSSADWKAARAYKE 98
+ P +FST + + + + +L A N++ Q+ R W+ + E
Sbjct: 73 GIIPAREFSTLTDEERAALSVGDHVLVFVVQAENQEGQAVLSIDRARQEKSWRRLQEIYE 132
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
+G I E ++ +N GGLLV + GF+P Q++ + K ++A+ L GS +S+
Sbjct: 133 AGEIIEAEVTNYNKGGLLVNLDGVRGFVPASQVTEIRGGDDSSKQA-DMAR-LIGSKLSL 190
Query: 159 KVIQANEEMKKLVFSEKDAVWNK---YSSRVNVEDIFVGR----------DYGAFIHLRF 205
K+I+ N +L+ SE+ A+ + R+ +E++ G D+GAF+ +
Sbjct: 191 KIIEINRHRNRLILSERQAIQERRDVMKERL-IEELTEGETRRGRVTSITDFGAFVDIGG 249
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DGL VH+SE+SW ++ ++L G+EV V V+ I+ E+ +I LSIK+ + +P
Sbjct: 250 ADGL------VHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKKIALSIKRTQPEP 302
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G G++ G V G + ++S S K P + + G + V
Sbjct: 228 GETRRGRVTSITDFGAFVDIGGADGLVHLSELSWSR-VKHPSEVLK------VGEEVDVY 280
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E KK+ S K W++ + + V + +G ++GAF R DG+
Sbjct: 281 VLGINAEEKKIALSIKRTQPEPWSRVAMKYEVGQLVLGTVTQLANFGAFA--RIEDGI-- 336
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
GL+HVSE+S I R +++EG ++ +++I+ID + R+ LS+++ E E
Sbjct: 337 -EGLIHVSELSEQRIGHPRQVVSEGQDLILRIIRIDPARRRMGLSLRRALEATDDEVAAS 395
Query: 272 VIPQGLE 278
+ P+ +E
Sbjct: 396 LGPEAVE 402
>gi|417002438|ref|ZP_11941827.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 687
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 23/184 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK E+ + G++ GFN GGL V + GF+P Q++ ++ K +K
Sbjct: 373 WKDLAEKAENDELVHGEVTGFNKGGLTVNVDGVNGFVPASQIA-TYFVKNFKK------- 424
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSS-RVNVEDIFVGRDYGAFI 201
G +K++ +E +LV S KD V W++ +V + D+GAF+
Sbjct: 425 -FVGEDWDLKIVSIDERKNRLVLSRKDVVEGQLDELWDELEEGQVVTGKVARLTDFGAFV 483
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ L GL+HVS+++W ++ D+LN GDEV VK++K+++EK+RI+L KQL
Sbjct: 484 EVN------GLDGLLHVSDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQLL 537
Query: 262 EDPL 265
E P
Sbjct: 538 EKPF 541
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + GK+ G V L G L ++ S + P ++ G +
Sbjct: 464 EEGQVVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSR-VEHPSDVLN------VGDEVE 516
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + + ++++ V D+ G+ D+GAF+ + DG+
Sbjct: 517 VKILKLNKEKNRISLGRKQLLEKPFEAFANQHEVGDVVTGKVVNLLDFGAFVEV--ADGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+SW+ ++ D LN GDE+ VK+I +D+E+ ++ LSIK L+E P
Sbjct: 575 ---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISLDKEEEKVGLSIKALKEAP 626
>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
Length = 416
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 177 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 226
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 227 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 283
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 284 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
+ L G + +K ++ +EE +LV S + A+ K +R+ V ++ +G + YGAFI +
Sbjct: 206 EDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 ------GGVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFNKAEE--MAAKYKQML 345
>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
Length = 382
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + +E
Sbjct: 148 WERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEE---------- 197
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + + ++ + + +G + YGAFI +
Sbjct: 198 -LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI- 254
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 255 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 309
>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
Length = 402
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + +E
Sbjct: 168 WERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEE---------- 217
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + + ++ + + +G + YGAFI +
Sbjct: 218 -LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI- 274
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 275 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 329
>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 186
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 24 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 73
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 74 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 130
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 131 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 185
>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
Length = 378
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 177 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 226
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 227 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDIG 284
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 285 ------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
>gi|145344629|ref|XP_001416831.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
lucimarinus CCE9901]
gi|144577057|gb|ABO95124.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
lucimarinus CCE9901]
Length = 352
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 21/213 (9%)
Query: 76 DANNRQSQSRSSADWKAA-RAYKESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMS 132
DA N + Q D +AA A + G GK++ N GG+++R FLP QM
Sbjct: 43 DAKNAREQ-----DVRAAIEAIERDGGRLTGKVEVVNRGGVVLRVTKGRFRAFLPKSQMR 97
Query: 133 PSHSCKEPQKSIHE-----IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV- 186
S + + E + + G +I VK++ + K++V SE+ + + S ++
Sbjct: 98 SSRLRGDFRGGAEEADETKMLEAQIGKLIDVKLV--DHSSKRIVVSERALLQERASEKLP 155
Query: 187 --NVEDIFVGR--DYGAFIHLRFPDG-LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 241
+V+++ V D+GAF+ + G L GLVH+SE+SW+ I RD + G V
Sbjct: 156 VGDVKEVVVTSLSDFGAFVEVCDGQGEASGLEGLVHISEISWNRISHPRDAVKVGQREFV 215
Query: 242 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
KV++++ E RI SIKQ + DPL+ETLE ++P
Sbjct: 216 KVLEVNDETGRINFSIKQTQADPLMETLETIMP 248
>gi|406905815|gb|EKD47166.1| RNA binding S1 protein [uncultured bacterium]
Length = 408
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 77 ANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
A N++S W+ + + + E K+ N GGL+V+ + GFLP Q++P +
Sbjct: 94 AGNKKS-------WEDLKEQFQKNEVVEVKVTDANKGGLIVKLNHITGFLPVSQLAPENY 146
Query: 137 CK---EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS----SRVNVE 189
+ + I E K G+ + V ++ N E +KL+ SEK +W S++ +
Sbjct: 147 PRVSGGDKVKILEKLKDFIGNKVRVHILDLNTEEEKLIVSEK-TIWEDEQKNVISKIAIG 205
Query: 190 DIFVG-----RDYGAFIHLRFPDGLYH----LTGLVHVSEVSWDLIQDIRDILNEGDEVR 240
DI G D+GAF+ P G+ L GLVH+SE++W I +D+L G V+
Sbjct: 206 DIIEGDITALADFGAFVKF-LPKGVTDPAGALEGLVHISEIAWQRIDHPKDLLKTGQTVK 264
Query: 241 VKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++I ID S+I LS+K+L+ DP ++ K
Sbjct: 265 AEIIGID--GSKIFLSMKKLKSDPWVDVENK 293
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA-------KGL- 151
G I EG I L F + V FLP P+ + E I EIA K L
Sbjct: 205 GDIIEGDITA------LADFGAFVKFLPKGVTDPAGAL-EGLVHISEIAWQRIDHPKDLL 257
Query: 152 -TGSIISVKVIQANEE-----MKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAF 200
TG + ++I + MKKL K W ++ + DI G +G F
Sbjct: 258 KTGQTVKAEIIGIDGSKIFLSMKKL----KSDPWVDVENKYKIGDIVEGTVLKSNPFGLF 313
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + GL HVSE+S + I + G+ ++ K++ I+ ++ R+ LS+K +
Sbjct: 314 VELD-----QDIHGLAHVSELSDEQIDHPSKVAKSGEVMKFKIVSIEPKEHRLGLSLKAI 368
>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
Length = 400
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + +E
Sbjct: 169 WERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKTTAEE---------- 218
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 219 -LLDKELPLKYVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI- 275
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 276 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
gi|113548409|dbj|BAF11852.1| Os03g0315800, partial [Oryza sativa Japonica Group]
Length = 390
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + +E
Sbjct: 156 WERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEE---------- 205
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + + ++ + + +G + YGAFI +
Sbjct: 206 -LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI- 262
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 263 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 317
>gi|357448761|ref|XP_003594656.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
gi|355483704|gb|AES64907.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
Length = 407
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + +GKI N GG++ L GF+PF QMS K P + I E
Sbjct: 168 WERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMS----TKSPGEEIIEFE- 222
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ +K ++ ++E +LV S + AV ++ + + G + YGAFI +
Sbjct: 223 ------VPLKFVEVDQEQARLVLSHRKAVAG-IQGQLGIGSVVTGTVQSLKPYGAFIDIG 275
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 276 -----GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|166157063|emb|CAO79520.1| 30S ribosomal protein S1 [uncultured candidate division WWE3
bacterium EJ0ADIGA11YD11]
Length = 414
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ W+ A E G I + + +N GGLL L GF+P + H + K
Sbjct: 99 KAEKDKKWQDAEEAFEKGLIIDATVIEYNKGGLLCDSLGLRGFIPLSHLDRVHFANDVAK 158
Query: 143 -------SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFV 193
+ E K L+G + VKVI+ ++E + V SEKDA+ +++ S + + +I +
Sbjct: 159 FAAGSEAELKESLKILSGKTLRVKVIEIDKEKNRFVLSEKDALATYSEESRKKRLSEIKI 218
Query: 194 GRDYGAFIHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
G + P G++ + GLVH+SE++W+ + + G +++V V+ +D E
Sbjct: 219 GSTVEGIVTGIMPFGVFVDLDGVEGLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEE 278
Query: 250 KSRITLSIKQLEEDPLLETLEKVIPQG 276
+++ LS+K+L +P ET+E+ P G
Sbjct: 279 SNKLALSVKKLIPNP-WETVEEKYPVG 304
>gi|428224572|ref|YP_007108669.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427984473|gb|AFY65617.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 323
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQQEDATVRSSVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
Length = 425
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + +GK+ N GGL V L GF+PF Q+S + +E
Sbjct: 190 WERCRQLQTEDVVVKGKVLSANKGGLNVLVECLRGFVPFSQISTKINIEE---------- 239
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE +LV S + A+ + +++ + + +G + YGAF+ L
Sbjct: 240 -LVNKEIPLKFMEVDEEQTRLVLSNRKAMADS-QAQLGIGSVVLGTVQTIKPYGAFVDL- 296
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + D+ IL GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 297 -----GGINGLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313]
Length = 367
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S ++P++
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHIS----TRKPKEE----- 213
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 214 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI 271
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 272 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 325
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 326 PGDMLTDPQKVFDKAEE--MAARYKQML 351
>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 415
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 20/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+A + E+G + + +N GGLLV + GF+P Q+S + QK
Sbjct: 123 KARQEKSWRALQVNHEAGDVIHAAVTNYNKGGLLVNLSGVRGFVPSSQVSSVSRGSDVQK 182
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR 195
++AK L G + +K+I+ N +L+ SE+ AV SR + + GR
Sbjct: 183 Q-SDMAK-LVGQTLPLKIIEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGR 240
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAF+ + DGL VH+SE+SW ++ ++L GD V V ++ +D +K
Sbjct: 241 VTSLCDFGAFVDIGGADGL------VHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDK 294
Query: 251 SRITLSIKQLEEDP 264
RI LSIK+ + +P
Sbjct: 295 KRIALSIKRTQAEP 308
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + G++ G V G + ++S S K P++ + G +S
Sbjct: 232 EPGAVRTGRVTSLCDFGAFVDIGGADGLVHLSELSWSR-VKHPEEVLK------VGDAVS 284
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
V ++ +E+ K++ S K W + R + G +GAF+ R DG+
Sbjct: 285 VYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFV--RLEDGI 342
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GL+H+SE+S + IQ RD++NEGD V ++I+ID + RI LS +
Sbjct: 343 ---EGLIHISEMSDERIQHPRDVINEGDSVSARIIRIDPTRKRIGLSTR 388
>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9303]
Length = 367
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S ++P++
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHIS----TRKPKEE----- 213
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 214 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI 271
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 272 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 325
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 326 PGDMLTDPQKVFDKAEE--MAARYKQML 351
>gi|406947536|gb|EKD78447.1| RNA binding S1 protein [uncultured bacterium]
Length = 388
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 20/200 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
RQ+ + + W+ + + I + +I N GGL+VR + GFLP Q+S H +
Sbjct: 94 RQAGHKKA--WEKLEHLQGANEIVDAQIMDANKGGLIVRVGHVSGFLPVSQLSVEHYPRV 151
Query: 140 PQKSIHEIAKGLTGSIIS---VKVIQANEEMKKLVFSEKDAVWNKYSSRV---NVEDIFV 193
+ +I + L + VKVI +E +KL+ SEK A + ++ V D
Sbjct: 152 EGGNKAKILERLQTYVTQHFRVKVIDVDEVDEKLIVSEKMAKAEQQQEKIAQYKVGDSIA 211
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G+ D+GAF+ F D +L GLVH+SE++W I D ++ L GD+V+ ++I ID
Sbjct: 212 GKVTGVVDFGAFV--EFGD---NLEGLVHISEIAWQRIDDPKEYLKVGDDVKAQIIAIDN 266
Query: 249 EKSRITLSIKQLEEDPLLET 268
+I+LSI+ L DP LE
Sbjct: 267 --GKISLSIRNLIADPWLEV 284
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W + ++R + ++ G+ +GAF+ L D H GL H+SE+S+ + +IL
Sbjct: 281 WLEVAARYKIGEVVRGKVLKLNPFGAFVEL---DSDIH--GLAHISELSYRKLNAPSEIL 335
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQL 260
GD K+I I+ K R+ LS K L
Sbjct: 336 KIGDVYDFKIISIEPGKHRLGLSYKSL 362
>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
Length = 361
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 159 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPG-----SHISTRKPKED---- 208
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 209 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 265
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 266 I------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEP 319
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 320 EPGDMLTDPQKVFDKAEE--MAARYKQML 346
>gi|352096607|ref|ZP_08957434.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351676257|gb|EHA59411.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 366
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 163 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 212
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 213 ---LVAGFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 269
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 270 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 323
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 324 EPGDMLTDPQKVFDKAEE--MAARYKQML 350
>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 343
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
Length = 369
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 167 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 216
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 217 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 273
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 274 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 327
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 328 EPGDMLTDPQKVFEKAEE--MAARYKQML 354
>gi|406917867|gb|EKD56549.1| RNA binding S1 protein [uncultured bacterium]
Length = 393
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 18/175 (10%)
Query: 106 KIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK--EPQKSIHEIAKGLTGSIISVKVIQA 163
+++ N GGL+V + SL GFLP Q+S SH K + + I + G + VK+I
Sbjct: 115 RVKQANRGGLIVEYGSLEGFLPASQLSSSHYPKVGDNKDKILSKLNEMIGQSLKVKIINF 174
Query: 164 NEEMKKLVFSEK---DAVWNKYSSRVN----VEDIFVGR-DYGAFIHLRFPDGLYHLTGL 215
+ + KL+FSEK D V ++ + ++ + G D+G F+ + L GL
Sbjct: 175 DTQSNKLIFSEKAAGDTVLDEKIQSIKPDQKLDGVITGVVDFGIFVDVG------GLEGL 228
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
VH+SE+SWD ++++R + GD+V VKV+ I E ++ SIK+L +DP L+ ++
Sbjct: 229 VHISEISWDKVENLRSMFRIGDKVEVKVLNI--EDRKVYFSIKRLTDDPWLKMVK 281
>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 343
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|357112501|ref|XP_003558047.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like
[Brachypodium distachyon]
Length = 401
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L F+PF Q+S + E
Sbjct: 167 WERCRQLQAEDVVITGKVIGGNKGGVVALVEGLKAFVPFSQVSSKTTADE---------- 216
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE +LV S + A+ + + ++ + + +G + YGAFI +
Sbjct: 217 -LLDKEIPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI- 273
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 274 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 328
>gi|406980774|gb|EKE02336.1| hypothetical protein ACD_20C00399G0021 [uncultured bacterium]
Length = 369
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 32/197 (16%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R SQ+RS + + R +E+ E K+ GG+LV+ L GF+P Q+
Sbjct: 102 RVSQARSWTELEQLRQNEET---IETKVISLVKGGVLVKVLGLRGFIPSSQLRTG----- 153
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIF 192
+ HE GL G I K+++A+ + KL+ S E++ V + ++V+ +
Sbjct: 154 ---TPHE---GLIGQDIPAKILEADPKRNKLILSQRLALAEEREKVVENVIASLHVDQLV 207
Query: 193 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
G D+GAFI + DGL + +SE+SW ++ DIL+ G V+VKV+KID
Sbjct: 208 EGEVVRIADFGAFIDINGIDGL------LPISEMSWQRVKHPSDILSLGQHVQVKVLKID 261
Query: 248 REKSRITLSIKQLEEDP 264
E +RI+LS+K++EE+P
Sbjct: 262 TELNRISLSLKRMEENP 278
>gi|428212888|ref|YP_007086032.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001269|gb|AFY82112.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 425
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R + ++ N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQTEDATVRSQVFATNRGGALVRIEGLRGFIPG-----SHISTRKPKEE----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 --LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPE 270
Query: 264 P 264
P
Sbjct: 271 P 271
>gi|358248430|ref|NP_001239880.1| uncharacterized protein LOC100812847 [Glycine max]
gi|255635364|gb|ACU18035.1| unknown [Glycine max]
Length = 412
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + +GKI G N GG++ L GF+P Q+S + + +E
Sbjct: 175 WERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQISTNSNVEE---------- 224
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + AV +++ + + G + YGAFI +
Sbjct: 225 -LLDKELPLKFVEVDEEQSRLVLSNRKAVAGN-QAQLGIGSVVTGSVQSLKPYGAFIDI- 281
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 -----GGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 336
>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
Length = 686
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK E+ + G + GFN GGL V + GF+P Q++ ++ K +K
Sbjct: 373 WKDLAEKAENDELVHGVVSGFNKGGLTVNVEGINGFVPASQIA-TYFVKNFKK------- 424
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVNVEDIFVGR-----DYGAFI 201
G +K+I +E +LV S K+ V ++ + + G+ D+GAF+
Sbjct: 425 -FVGEEWDLKIISIDERKNRLVLSRKEVVEDELDGLWEELEEGQVVTGKVARLTDFGAFV 483
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ L GL+HVS+++W ++ D+LN GDE+ VK++K+++EK+RI+L KQL
Sbjct: 484 EVN------GLDGLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLL 537
Query: 262 EDPL 265
E P
Sbjct: 538 EKPF 541
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + GK+ G V L G L ++ S + P ++ G I
Sbjct: 464 EEGQVVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSR-VEHPSDVLN------VGDEIE 516
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + + + VN V D+ G+ D+GAF+ + DG+
Sbjct: 517 VKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNLLDFGAFVEV--ADGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+SW+ ++ D LN GDE+ VK+I ID ++ ++ LSIK L+E P
Sbjct: 575 ---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKALKEAP 626
>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 383
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
Length = 359
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 157 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 206
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 207 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 263
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 264 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 317
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 318 EPGDMLTDPQKVFDKAEE--MAARYKQML 344
>gi|434392818|ref|YP_007127765.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
gi|428264659|gb|AFZ30605.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
Length = 330
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQTEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428298667|ref|YP_007136973.1| 30S ribosomal protein S1P [Calothrix sp. PCC 6303]
gi|428235211|gb|AFZ01001.1| SSU ribosomal protein S1P [Calothrix sp. PCC 6303]
Length = 356
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 -LVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|440684481|ref|YP_007159276.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
gi|428681600|gb|AFZ60366.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
Length = 359
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427702896|ref|YP_007046118.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427346064|gb|AFY28777.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 358
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 156 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 206 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDI 263
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 264 ------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 317
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 318 PGDMLSDPQKVFDKAEE--MAARYKQML 343
>gi|427418503|ref|ZP_18908686.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425761216|gb|EKV02069.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 340
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQNEDATVRSDVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V ++ +G + YGAFI +
Sbjct: 159 -LVGEALPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVIGAVRGLKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I +LN DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPNTVLNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 375
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|388491680|gb|AFK33906.1| unknown [Medicago truncatula]
Length = 409
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + +GKI N GG++ L GF+PF QMS K P + I E
Sbjct: 170 WERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMS----TKSPGEEIIEFE- 224
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ +K ++ ++E +LV S + AV ++ + + G + YGA I +
Sbjct: 225 ------VPLKFVEVDQEQARLVLSHRKAVAG-IQGQLGIGSVVTGTVQSLKPYGALIDIG 277
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 278 -----GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 332
>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 355
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 153 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 202
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 203 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 259
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 260 I------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEP 313
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 314 EPGDMLTDPQKVFEKAEE--MAARYKQML 340
>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 354
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S ++P++
Sbjct: 155 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHIS----TRKPKEE----- 204
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 205 --LVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 262
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 263 ------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 316
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 317 PGDMLTDPQKVFEKAEE--MAARYKQML 342
>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 367
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 166 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPG-----SHISTRKPKEE---- 215
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 216 ---LVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFID 272
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 273 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 326
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV E + + YK+M+
Sbjct: 327 EPGDMLTDPQKVFDNAEE--MAARYKQML 353
>gi|434404514|ref|YP_007147399.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428258769|gb|AFZ24719.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 378
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427717194|ref|YP_007065188.1| 30S ribosomal protein S1P [Calothrix sp. PCC 7507]
gi|427349630|gb|AFY32354.1| SSU ribosomal protein S1P [Calothrix sp. PCC 7507]
Length = 361
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428306344|ref|YP_007143169.1| 30S ribosomal protein S1P [Crinalium epipsammum PCC 9333]
gi|428247879|gb|AFZ13659.1| SSU ribosomal protein S1P [Crinalium epipsammum PCC 9333]
Length = 391
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427710313|ref|YP_007052690.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427362818|gb|AFY45540.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 358
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|354568686|ref|ZP_08987849.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353539940|gb|EHC09420.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 337
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG 218
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 219 ------GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 341
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|414079272|ref|YP_007000696.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413972551|gb|AFW96639.1| 30S ribosomal protein S1 [Anabaena sp. 90]
Length = 355
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 343
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 343
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427732442|ref|YP_007078679.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427368361|gb|AFY51082.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 344
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
Length = 351
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 149 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 198
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 199 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDI 256
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 257 ------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 310
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 311 PGDMLTDPQKVFDKAEE--MAARYKQML 336
>gi|390559271|ref|ZP_10243622.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
gi|390174148|emb|CCF82915.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
Length = 459
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E G I E ++ +N GGLLV + GF+P Q++ E K
Sbjct: 117 RARQEKSWRLLQEAFEGGDIIEAQVTNYNKGGLLVNLDGVRGFVPASQVTEIRGGDEGSK 176
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNK---YSSRVNVEDIFVGR---- 195
++++ L GS + +K+I+ N +L+ SE+ AV K R+ +E++ G
Sbjct: 177 QA-DMSR-LIGSRLPLKIIEINRHRNRLILSERQAVQEKRDVMKERL-IEELHEGETRRG 233
Query: 196 ------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
D+GAF+ + DGL VH+SE+SW ++ ++L G+EV V V+ I+
Sbjct: 234 RVTSICDFGAFVDIGGADGL------VHLSELSWSRVKHPAEVLKVGEEVDVYVLGINAN 287
Query: 250 KSRITLSIKQLEEDP 264
+ +I LSIK+ + +P
Sbjct: 288 EKKIALSIKRTQAEP 302
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ N KK+ S K W++ + + V + G ++GAF
Sbjct: 273 VGEEVDVYVLGINANEKKIALSIKRTQAEPWSQVAVKYEVGQLVRGTVTQLANFGAFA-- 330
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
R DG+ GL+HVSE+S I R ++EG E+ +++I+ID + R+ LS+++
Sbjct: 331 RIEDGV---EGLIHVSELSEQRIAHPRQAVSEGQELILRIIRIDPARRRMGLSLRR 383
>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
Length = 438
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + + I +G + N GGL ++ L FLPF Q++ + +
Sbjct: 198 WERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGLN-----------QE 246
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
LTG + VKV++ +EE K+LV S + A+ ++ + + + VG + YGAFI L
Sbjct: 247 NLTGRELPVKVLEVDEEQKRLVVSHRKALAENQAT-LGIGSVVVGTVQTIKPYGAFIDL- 304
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
LTGL+HVS++S D I + ++L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 305 -----GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHDKDRGRISLSTKKLEPTP 359
>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 369
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R + ++ N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPG-----SHISTRKPKEE----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 --LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPE 270
Query: 264 P 264
P
Sbjct: 271 P 271
>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
Length = 434
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + + I +G + N GGL ++ L FLPF Q++ + +
Sbjct: 194 WERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGLN-----------QE 242
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
LTG + VKV++ +EE K+LV S + A+ ++ + + + VG + YGAFI L
Sbjct: 243 NLTGRELPVKVLEVDEEQKRLVVSHRKALAENQAT-LGIGSVVVGTVQTIKPYGAFIDL- 300
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
LTGL+HVS++S D I + ++L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 301 -----GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHDKDRGRISLSTKKLEPTP 355
>gi|428314208|ref|YP_007125185.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428255820|gb|AFZ21779.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 339
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 -LVGEELQLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|411117376|ref|ZP_11389863.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713479|gb|EKQ70980.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 331
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 ------GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|406992102|gb|EKE11509.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK---EPQKSIHE 146
W+ + +++ K+ N GGLLV + GFLP Q+S + + + I
Sbjct: 123 WEDIESKRDTQEKISTKVLSANKGGLLVEVNGISGFLPVSQLSSKNYPRVDDGDKNKILT 182
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG----------RD 196
+ K L + V+++ A+ E +KL+ SEK A K + + ++ VG D
Sbjct: 183 LLKKLVSQELEVRILDADRESEKLIVSEKAAQSEK--DKETISNLKVGDVVEGEVSGVVD 240
Query: 197 YGAFIHLRFPDGLYH-------LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
+GAF+ P+ L GLVH+SE++W LI++ RDI GD+V+ K+I ID +
Sbjct: 241 FGAFVKFFQPNPEKEKPTEEDKLEGLVHISELAWQLIENPRDITKVGDKVQAKIIGIDND 300
Query: 250 KSRITLSIKQLEEDPLLETLEK 271
K I+LSI+ L++DP EK
Sbjct: 301 K--ISLSIRALQKDPWSAVEEK 320
>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 305
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 102 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 151
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI
Sbjct: 152 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFID 208
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 209 IG------GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 262
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 263 EPGDMLTDPQKVFDKAEE--MAARYKQML 289
>gi|434389320|ref|YP_007099931.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428020310|gb|AFY96404.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 339
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + +E
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTRKAKEE---------- 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVNEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 176
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 23/176 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 19 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 68
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 69 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 125
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+L
Sbjct: 126 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKL 176
>gi|295111344|emb|CBL28094.1| Ribosomal protein S1 [Synergistetes bacterium SGP1]
Length = 516
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 25/172 (14%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V L GF+P ++ + I E VK ++ ++ +LVF
Sbjct: 142 GGLMVECCGLEGFIPMSHIAENGRGSNLSSFIDET--------FEVKPLERDKRKHRLVF 193
Query: 173 SEKDAVWN-------KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S KD V K+ V+ D+ G D+G F++L+ + GLVHVSE
Sbjct: 194 SRKDLVAKENAEKRAKFYDEVHEGDVLEGEVSSITDFGIFVNLKGA-----MDGLVHVSE 248
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
++W IRD+ +GD+V VKVI +D+EK RI+LSIKQ++ DP L E++
Sbjct: 249 ITWKRNVRIRDLYKKGDKVTVKVIGLDKEKDRISLSIKQVQGDPWLTAGERI 300
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 28/189 (14%)
Query: 91 KAARAYKE--SGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
K A+ Y E G + EG++ G+ V ++ G + +++ + + I ++
Sbjct: 206 KRAKFYDEVHEGDVLEGEVSSITDFGIFVNLKGAMDGLVHVSEITWKRNVR-----IRDL 260
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGA 199
K G ++VKVI ++E ++ S K W R++ D+ G D+GA
Sbjct: 261 YK--KGDKVTVKVIGLDKEKDRISLSIKQVQGDPWLTAGERIHKGDVMKGVVTNVTDFGA 318
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI----DREKSRITL 255
F+ L + GL+H+ ++SW I+ RD +G EV V V+ I D +K RI+L
Sbjct: 319 FVELE-----PGIEGLIHIGDISWARIKHPRDTFRKGQEVEVLVMDIALSEDPKKCRISL 373
Query: 256 SIKQLEEDP 264
KQL DP
Sbjct: 374 GYKQL-NDP 381
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
++GAF+ + + L+H+S++S ++ D+L+EG EV ++I+++ E+ R+ L
Sbjct: 404 EFGAFV-----EAEEGVEALIHISQLSNRRVEKPGDVLHEGQEVVARMIEVNPEQRRMRL 458
Query: 256 SIKQLEE 262
S+ LEE
Sbjct: 459 SLSALEE 465
>gi|334121254|ref|ZP_08495327.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333455342|gb|EGK83994.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 371
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 25/207 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
Query: 265 --LLETLEKVIPQGLEPYLKSFYKKMV 289
+++ E V + E K F +KM+
Sbjct: 272 GAMVKNRELVYEKAEEMAAK-FREKML 297
>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
Length = 398
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 27/207 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R + ++ N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPG-----SHISTRKPKEE----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 --LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPE 270
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKM 288
P +++ E V + E K F +KM
Sbjct: 271 PGAMVKNPEMVYEKAEEMAAK-FREKM 296
>gi|428316075|ref|YP_007113957.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
gi|428239755|gb|AFZ05541.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
Length = 364
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
Length = 692
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK E+ + GK+ FN GGL V + GF+P Q++ ++ K +K
Sbjct: 376 WKELSDKFENEELVHGKVISFNKGGLTVEVNGVNGFVPASQIA-TYFVKNLKK------- 427
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR--DYGAF 200
G +K+I +E +LV S KD + W++ V+ V R D+GAF
Sbjct: 428 -FVGEEWDLKIISIDERKNRLVLSRKDVLEAELDDLWDELEEGQVVKG-KVARLTDFGAF 485
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + L GL+HVS+++W ++ D+LN GDE+ VK++K+++EK+RI+L KQL
Sbjct: 486 VEVN------GLDGLLHVSDIAWTRVEHPSDVLNVGDEIEVKILKLNKEKNRISLGRKQL 539
Query: 261 EEDPL 265
E P
Sbjct: 540 IEKPF 544
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+ G V L G L ++ + + P ++ G I
Sbjct: 467 EEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWTR-VEHPSDVLN------VGDEIE 519
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + + VN V D+ G+ D+GAF+ + DG+
Sbjct: 520 VKILKLNKEKNRISLGRKQLIEKPFEKFVNEHQVGDVVEGKVVNLLDFGAFVEV--ADGV 577
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+SWD ++ D LN GD + VK+I ID+++ ++ LSIK L+E P
Sbjct: 578 ---EGLVHVSEISWDHVEKPSDELNVGDTIEVKIISIDKDEEKVGLSIKALKEAP 629
>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
Length = 330
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 126 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 175
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 176 --LVSDFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 233
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 234 ------GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 287
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 288 PGDMLTDPQKVFDKAEE--MAARYKQML 313
>gi|443322096|ref|ZP_21051130.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
gi|442788220|gb|ELR97919.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
Length = 344
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S + ++
Sbjct: 110 WERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTRQAKED---------- 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ K +R+ V ++ +G + YGAFI +
Sbjct: 160 -LVGQELPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGTVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I+ + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHEHIETPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|359459159|ref|ZP_09247722.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 325
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S + + KE
Sbjct: 109 WERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHIS-TRATKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 158 DLIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427737703|ref|YP_007057247.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427372744|gb|AFY56700.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 442
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHEHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383321905|ref|YP_005382758.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325074|ref|YP_005385927.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490958|ref|YP_005408634.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436225|ref|YP_005650949.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814321|ref|YP_007450773.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530.1|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273257|dbj|BAK49744.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271224|dbj|BAL28743.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274394|dbj|BAL31912.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277564|dbj|BAL35081.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958070|dbj|BAM51310.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451780290|gb|AGF51259.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 328
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 108 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISA-----------REAKE 156
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 157 DLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDI- 215
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 216 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270
>gi|443311823|ref|ZP_21041447.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
gi|442778223|gb|ELR88492.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
Length = 331
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LLGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|423063754|ref|ZP_17052544.1| RNA binding S1 domain protein [Arthrospira platensis C1]
gi|406714603|gb|EKD09764.1| RNA binding S1 domain protein [Arthrospira platensis C1]
Length = 384
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R + ++ N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPG-----SHISTRKPKEE----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 --LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPE 270
Query: 264 P 264
P
Sbjct: 271 P 271
>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 325
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S + + KE
Sbjct: 109 WERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHIS-TRATKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 158 DLIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|376006629|ref|ZP_09783861.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375324995|emb|CCE19614.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 375
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|409990465|ref|ZP_11273835.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
gi|409938680|gb|EKN79974.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
Length = 320
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|149177391|ref|ZP_01855995.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
gi|148843724|gb|EDL58083.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
Length = 572
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK-EPQKS 143
+ + DW A A G + E + N GGL V SL GFLP Q+ EP
Sbjct: 269 KPAGDWDAVSA----GQVVECVVNKSNKGGLEVNVGSLRGFLPASQVDLYFVGDLEP--- 321
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-- 194
G ++V++ + N + + LV S E++ + + ++ + G
Sbjct: 322 -------FVGQKLTVQITEVNPKKRNLVVSRRKYLESEREEIQKELWEKLAIGQEHTGTV 374
Query: 195 ---RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
+DYGAF+ L + G +H+ E+SW+ I+ +D L+E ++ VK++KID+EK+
Sbjct: 375 KNIKDYGAFVDL------GGIDGFLHIGEISWNRIKHPKDALSEHQQINVKILKIDKEKN 428
Query: 252 RITLSIKQLEEDP 264
RI+L +KQL++DP
Sbjct: 429 RISLGMKQLQQDP 441
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G ++ G V + GFL ++S + K P+ ++ E + I+VK
Sbjct: 367 GQEHTGTVKNIKDYGAFVDLGGIDGFLHIGEIS-WNRIKHPKDALSEHQQ------INVK 419
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
+++ ++E ++ K W R G+ D+GAFI L
Sbjct: 420 ILKIDKEKNRISLGMKQLQQDPWQSAEDRYATGSTISGKVTRTTDFGAFIELE-----PG 474
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L GL+H+SE+ ++ + ++L G E KV+++D + RI+LSIK L + P
Sbjct: 475 LEGLIHISELDHRRVKRVTEVLTTGQETSAKVLEVDPNRKRISLSIKALIDKP 527
>gi|428210328|ref|YP_007094681.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428012249|gb|AFY90812.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 356
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQNEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVSEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 390
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 27/208 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R + ++ N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPG-----SHISTRKPKED----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 --LLNEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I+ +L DE++V +I +D ++ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIETPSSVLKVNDELKVMIIDLDADRGRISLSTKQLEPE 270
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +++ + V Q E K F +KM+
Sbjct: 271 PGAMVKNPQMVYDQAEEMAAK-FREKMM 297
>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
Length = 175
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 23/175 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 19 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 68
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 69 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 125
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+
Sbjct: 126 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKK 175
>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
Length = 414
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 -LVSEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|428770655|ref|YP_007162445.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684934|gb|AFZ54401.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 346
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R +E + N GG LVR L GF+P +S + ++
Sbjct: 110 WQRVRQLQEEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAKDTKED---------- 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 160 -LVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDIG 218
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 219 ------GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|406965785|gb|EKD91382.1| hypothetical protein ACD_30C00015G0002 [uncultured bacterium]
Length = 373
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R ++++ + W A +S + +GK N GGL+V + GFLP Q++ S +
Sbjct: 111 RSLKTKTPSQWYKFEAALKSNSVLKGKALELNRGGLIVEVEGIRGFLPSSQVTLSQAA-- 168
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGA 199
++ E L G + V I+ +L+FS+K V + N+ + G +
Sbjct: 169 ---NLEE----LVGKDVDVTPIEVEANQNRLIFSQKTTVSEDI--KENLSKLKAGDEIKG 219
Query: 200 FIHLRFPDGLY-----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+ P G++ + GLVHVSE+SW+ +D + GDEV+ KV+ ++ R
Sbjct: 220 VVAAVLPFGIFVTLQSGVEGLVHVSEISWEKTEDPSLVYKVGDEVKAKVLSVETNTGRAN 279
Query: 255 LSIKQLEEDPLLE-------------TLEKVIPQGLEPYLKSFYKKMV 289
LSI+QL DP + T+ KV QG+ L+ + M+
Sbjct: 280 LSIRQLVSDPFKDKAKDLQADDIVKGTVTKVSTQGISVSLEGGIEGMI 327
>gi|443315844|ref|ZP_21045315.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442784569|gb|ELR94438.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 330
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S ++P++
Sbjct: 111 WERVRQLQKEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 160
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V ++ +G + YGAFI +
Sbjct: 161 -LVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVLGNVRGLKPYGAFIDI- 218
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 219 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 273
>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + G I N GG +V L GF+PF Q+S + P++
Sbjct: 175 WERCAQMLADDVVVRGTILSHNSGGFVVDVEGLRGFVPFSQVSARGAQSNPEE------- 227
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE +LV S + A + + S + + VG + YGAFI +
Sbjct: 228 -LLNKEIPLKFLEVDEERTRLVLSNRKATFAENQSAFGIGSVVVGTVQTVKPYGAFIDIG 286
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+S++S D + + +L+ GD+++V ++ D+++ RI+LS K+LE P
Sbjct: 287 ------GVSGLLHISQISHDRLTTVETVLSPGDKLKVMILSQDKDRGRISLSTKKLEPTP 340
>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 23/174 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I + K+ G N GGL+ L GF+PF Q+S + +E
Sbjct: 16 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 65
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 66 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI- 122
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K
Sbjct: 123 -----GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTK 171
>gi|429745125|ref|ZP_19278568.1| ribosomal protein S1 [Neisseria sp. oral taxon 020 str. F0370]
gi|429161332|gb|EKY03749.1| ribosomal protein S1 [Neisseria sp. oral taxon 020 str. F0370]
Length = 559
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGF 110
P G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 55 PQGEVEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGLINGK 114
Query: 111 NGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 115 VKGGLTVMINSIRAFLPGSLLDVRPIKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV-- 172
Query: 164 NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
++ + E+ A+ V+ I DYGAF+ L DGL H+T L +
Sbjct: 173 ---LEATLGEERKALLENLQEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDL------A 223
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
W ++ ++L G EV KV+K D+EK R++L IKQL EDP
Sbjct: 224 WRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGIKQLGEDP 265
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 ARRYPAGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V +++ +E+ +++ K W +++ N D G D+G F+ L
Sbjct: 323 LGDEVEVMILEIDEDRRRISLGMKQCQPNPWEDFAANYNKGDKIKGAVKSITDFGVFVGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 383 --PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLGIDVEKERISLGIKQLEG 437
Query: 263 DPL 265
DP
Sbjct: 438 DPF 440
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQEKQRVSLGIKQLGEDPWSGLARRYPAGTRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ + +P
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCQPNP 352
>gi|427711825|ref|YP_007060449.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 6312]
gi|427375954|gb|AFY59906.1| ribosomal protein S1 [Synechococcus sp. PCC 6312]
Length = 339
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + +E
Sbjct: 108 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTRVNKEE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +++ V ++ +G + YGAFI +
Sbjct: 158 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKPYGAFIDIG 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ------GVSGLLHISEISHDHIDTPHSVFNVNDQLKVMIIDLDAERGRISLSTKQLEPEP 270
>gi|428772044|ref|YP_007163832.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428686323|gb|AFZ46183.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 352
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S + ++
Sbjct: 110 WERVRQLQQEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAKDAKED---------- 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 160 -LLGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG 218
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 219 ------GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|365873627|ref|ZP_09413160.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
gi|363983714|gb|EHM09921.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
Length = 499
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V L GF+P ++ P L G VK+++ + ++LV
Sbjct: 136 GGLIVDCCGLEGFIPISHLAEEGRGINPAN--------LVGKTFPVKLVEKDRRKRRLVL 187
Query: 173 SEKDAVWNKYSS-------RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S + + + SS V+ DI G +G F++L L GLVHV+E
Sbjct: 188 SRRSILEEELSSLREDFYANVHEGDILEGDVSSVTSFGVFVNL------GALEGLVHVTE 241
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+SW +DI+ +GD VRVKVI IDRE +RI+LS+KQ +EDP +
Sbjct: 242 LSWQRGAKAKDIVQKGDRVRVKVIGIDRENNRISLSLKQAQEDPWV 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 25/182 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT--GSIIS 157
G I EG + G+ V +L G + ++S K AK + G +
Sbjct: 211 GDILEGDVSSVTSFGVFVNLGALEGLVHVTELSWQRGAK---------AKDIVQKGDRVR 261
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VKVI + E ++ S K A W +SR +V G D+GAF+ +
Sbjct: 262 VKVIGIDRENNRISLSLKQAQEDPWVNVTSRWSVGQKTKGVVTNLADFGAFVEIE----- 316
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ GL+H+ ++SW ++ +++L +G EV V ++++D E+ RI L KQL DP
Sbjct: 317 PGVEGLIHIGDLSWSRVKHPKEVLRKGQEVEVVILEVDGERRRIGLGFKQL-NDPWNNVA 375
Query: 270 EK 271
EK
Sbjct: 376 EK 377
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 14/120 (11%)
Query: 153 GSIISVKVIQANEEMKK--LVFSEKDAVWN----KYSSR--VNVEDIFVGRDYGAFIHLR 204
G + V +++ + E ++ L F + + WN KYS VNV+ + + D+GAF+ L
Sbjct: 343 GQEVEVVILEVDGERRRIGLGFKQLNDPWNNVAEKYSKDQVVNVKVVRLA-DFGAFVELE 401
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DG+ GL+H+S++S ++ D+L EG EV+ K+++++ + RI LS++ LEE+P
Sbjct: 402 --DGV---EGLIHISQLSRQRVEKPSDVLKEGQEVQAKILEVNPAERRIRLSLRALEEEP 456
>gi|294670875|ref|ZP_06735731.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307362|gb|EFE48605.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 578
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 29/275 (10%)
Query: 16 ASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAAKITPTTVNPILDDSS 75
A + H ++ L SL+ +N +NL G+ T+ + +
Sbjct: 48 AITDKHVIVNAGLKSESLIDINEF-------KNLQ--GEVEVKVGDFVTVTIESVENGFG 98
Query: 76 DANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------P 129
+ + +++ +ADW A E+G I G I G GGL V S+ FLP P
Sbjct: 99 ETKLSREKAKRAADWIALEEAMENGDILSGLINGKVKGGLTVMINSIRAFLPGSLLDVRP 158
Query: 130 QMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV 188
SH KE + + ++ K ++S + + ++ + E+ A+ V
Sbjct: 159 IKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV-----LEATLGEERKALLENLQEGTVV 213
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T L +W ++ ++L G EV KV+K D
Sbjct: 214 KGIVKNITDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLEVGQEVEAKVLKFD 267
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++K R++L IKQL EDP L + PQG + K
Sbjct: 268 QDKQRVSLGIKQLGEDP-WSGLARRYPQGTRLFGK 301
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 289 ARRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 341
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V +++ +E+ +++ K W + + N D G D+G F+ L
Sbjct: 342 LGDEVEVMILEIDEDRRRISLGMKQCQANPWEDFDANYNKGDKIKGAVKSITDFGVFVGL 401
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 402 --PG---NIDGLVHLSDLSWTETGEEAVRKYKKGEEVETVVLAIDVEKERISLGIKQLEG 456
Query: 263 DPL 265
DP
Sbjct: 457 DPF 459
>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
Length = 687
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ + G++ FN GGL V + GF+P Q++ ++ K +K
Sbjct: 373 WQELAQKAENDELVHGEVVSFNKGGLTVNVNGVNGFVPASQIA-TYFVKNFKK------- 424
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR--DYGAF 200
G +K+I +E +LV S KD V W++ V+ V R D+GAF
Sbjct: 425 -FVGEQWDLKIISIDERKNRLVLSRKDVVEEELDNLWDELEEGQVVKGK-VARLTDFGAF 482
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + L GL+HVS+++W ++ D+L+ GDE+ VK++K+++EK+RI+L KQL
Sbjct: 483 VEVN------GLDGLLHVSDIAWSRVEHPSDVLSVGDEIEVKILKLNQEKNRISLGRKQL 536
Query: 261 EEDPL 265
E P
Sbjct: 537 LEKPF 541
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+ G V L G L ++ S + P + G I
Sbjct: 464 EEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWSR-VEHPSDVLS------VGDEIE 516
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ N+E ++ K + + + N V D+ G+ D+GAF+ + DG+
Sbjct: 517 VKILKLNQEKNRISLGRKQLLEKPFEAFANHHEVGDVVTGKVVNLLDFGAFVEV--ADGV 574
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+SW+ ++ D LN GDE+ VK+I ID+E+ ++ LSIK L+E P
Sbjct: 575 ---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDKEEEKVGLSIKALKEAP 626
>gi|116623389|ref|YP_825545.1| 30S ribosomal protein S1 [Candidatus Solibacter usitatus Ellin6076]
gi|116226551|gb|ABJ85260.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
Ellin6076]
Length = 571
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESG 100
+ P+ +F + + ++T V+ ++D S S + A W
Sbjct: 59 GIVPIEQFQSPSGEVTVKRGDVVDVMIDRSEQVEGYVLLSHTKAARLRIWDNLEHAANEQ 118
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ G++ G GGL V + F+P Q P + +H + L G I VK+
Sbjct: 119 LVLSGRVLGRVKGGLAVDV-GIKAFMPGSQADP--------RPVHNL-DALVGQDIPVKI 168
Query: 161 IQANEEMKKLVFSEKDAVWNKYSSR--VNVEDIFVG----------RDYGAFIHLRFPDG 208
I+ N +V S K A+ + +SR V ++ +F G DYGAFI L DG
Sbjct: 169 IKLNRRRGNVVVSRKMAIEEEINSRKTVTLDHLFEGAAVTGTVKNLTDYGAFIDLGGIDG 228
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L +HV+++S+ I ++L G E+ VKV+K DR K R++L IKQLE DP
Sbjct: 229 L------LHVTDMSYGRITHPSEMLQVGQEITVKVLKFDRTKERVSLGIKQLEPDPWDTV 282
Query: 269 LEK 271
+E+
Sbjct: 283 IER 285
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G G ++ G + + G L MS P + + G I+VK
Sbjct: 204 GAAVTGTVKNLTDYGAFIDLGGIDGLLHVTDMSYGR-ITHPSEMLQ------VGQEITVK 256
Query: 160 VIQANEEMKKLVFS----EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
V++ + +++ E D W+ R V +GR DYGAF+ L P
Sbjct: 257 VLKFDRTKERVSLGIKQLEPDP-WDTVIERYPVNGRVIGRVVNVTDYGAFVELE-PG--- 311
Query: 211 HLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+SE++W ++ ++ GD+V V+++ + RI+L +KQLE +P
Sbjct: 312 -VEGLIHISEMTWSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQLEPNP 365
>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
Length = 346
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R +E + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLREEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|357419716|ref|YP_004932708.1| SSU ribosomal protein S1P [Thermovirga lienii DSM 17291]
gi|355397182|gb|AER66611.1| SSU ribosomal protein S1P [Thermovirga lienii DSM 17291]
Length = 514
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 26/172 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V L GF+P SH+ +E KS++ ++K L G KVI+ + ++LV
Sbjct: 151 GGLIVDCLGLEGFIPI-----SHTSEEG-KSVN-LSK-LVGGTFDAKVIEKDRRKRRLVL 202
Query: 173 S-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S E+ + +++ +V+ D+ G +GAF+ L + GL+H SE
Sbjct: 203 SRRVILEEERSKLLDEFYGKVSEGDVVEGTVSTVTSFGAFVDL------GPIEGLIHNSE 256
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
+SW + RD++++GD+V VKVI IDREK++I+LS+KQL+ DP EK+
Sbjct: 257 LSWQKNVNPRDVVSKGDKVSVKVIGIDREKNKISLSLKQLQPDPWESAKEKL 308
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G + EG + G V + G + ++S QK+++ G +SV
Sbjct: 225 EGDVVEGTVSTVTSFGAFVDLGPIEGLIHNSELSW-------QKNVNPRDVVSKGDKVSV 277
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
KVI + E K+ S K W +++V DI G D+G F+ + L
Sbjct: 278 KVIGIDREKNKISLSLKQLQPDPWESAKEKLSVGDIVKGTVTNVMDFGVFVEV-----LP 332
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+ ++SW I+ ++++ +G + V+V+ +D E RI L +KQL DP
Sbjct: 333 GVEGLIHIGDLSWHRIKHPKEVVKKGQTIEVQVLSLDWENKRIGLGLKQL-HDP 385
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W++A+ G I +G + G+ V V G + +S H K P++ + +
Sbjct: 301 WESAKEKLSVGDIVKGTVTNVMDFGVFVEVLPGVEGLIHIGDLS-WHRIKHPKEVVKK-- 357
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKD--AVWNKYSSRVNVEDIFVGR-----DYGAFI 201
G I V+V+ + E K++ K W R V + + D+GAF+
Sbjct: 358 ----GQTIEVQVLSLDWENKRIGLGLKQLHDPWKNIEERYQVNQDYPVKVVRLTDFGAFV 413
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L + GL+HVS+++ ++ D+L+ G EV+ +++ + ++ RI LSI +E
Sbjct: 414 ELE-----QGVEGLIHVSQIARKRVEKPSDVLSIGQEVQARLVDMRPQERRIRLSIAAIE 468
Query: 262 EDPLLETLEKVIPQGLEPYLKS 283
E+ + E+ Q + KS
Sbjct: 469 EEKYRKQREEEKKQRMAEQAKS 490
>gi|384246163|gb|EIE19654.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 400
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 97/183 (53%), Gaps = 20/183 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEI 147
W+ R E G E + GL+VR + + GF+P +SP P ++
Sbjct: 184 WQRLRQMSEEGATVEAVVDSVRPAGLIVRINASDVTGFVPGSHISPG-----PGPAVD-- 236
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN-KYSSRVNVEDIFVG-----RDYGAFI 201
+ L G +++K+++ +EE +LV S + +N + + V ++ G + YGAF+
Sbjct: 237 WQTLLGETLNLKILELDEEKDRLVLSNRKNAFNTRRQINLQVGEVVDGTVATLQPYGAFV 296
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+L ++ GL+H+S++S D I + ++L G +V+V ++ +D+EK R++LS K+LE
Sbjct: 297 NLG-----DNMNGLLHISQISHDRISSVENVLQVGQKVKVMILTLDKEKGRVSLSTKKLE 351
Query: 262 EDP 264
P
Sbjct: 352 PTP 354
>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
Length = 443
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 20/198 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E+G + E ++ +N GGLLV + GF+P Q+ E K
Sbjct: 114 RARQEKTWRRLQEVFEAGGVIEAEVVNYNKGGLLVNLDGIRGFVPASQVVAIRGGDEVSK 173
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----- 195
++A+ + G + +K+I+ N +L+ SE+ AV + + +E + G
Sbjct: 174 Q-ADMAR-MVGQRLKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIETLREGETRRGR 231
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+G F+ + DGL VH+SE+SW ++ ++L GDEV V V+ ++ E+
Sbjct: 232 VTSIADFGVFVDIGGADGL------VHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNPEQ 285
Query: 251 SRITLSIKQLEEDPLLET 268
+I LSI++ + +P ++
Sbjct: 286 RKIALSIRRTQPEPWMQV 303
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 152 TGSIISVKVIQANEEMKKLVFS---EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ N E +K+ S + W + +S+ V + G +GAF L
Sbjct: 270 VGDEVDVMVLSVNPEQRKIALSIRRTQPEPWMQVASQFQVGQVVRGTITQLASFGAFARL 329
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QL 260
+ + GL+HVSE++ ++ ++L EGD+V V+VI+ID + RI LS++ ++
Sbjct: 330 Q-----EGVEGLIHVSELAGWRVEHPNEVLQEGDDVIVRVIRIDPARRRIGLSLRRALEI 384
Query: 261 EEDPLLETL--------EKVIPQGLEPY 280
++ L TL +++I +G+ PY
Sbjct: 385 SDEELEATLGPEAVAIKQQLIARGITPY 412
>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
Length = 327
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R Y E EG++ N GG++V + GF P Q+ E
Sbjct: 119 WQRLRQYLEDDVSVEGRVVATNRGGVIVEVECIRGFCPGSQLGQRVQTFEE--------- 169
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L ++ KV + +EE +L+ S K V ++ V D+ G + YGAF+ +
Sbjct: 170 -LLDRTMAFKVTEVDEEKARLMLSNKRVVADERVGGFKVGDVVEGTVISVKPYGAFVDI- 227
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+GL+H+S++S D I ++ +L+EGD ++V V+ DRE+ R+ L K+LE P
Sbjct: 228 -----GGASGLLHISQISHDRITNVDKVLSEGDRIKVMVLSQDRERGRVALCTKKLEPTP 282
>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
gi|194703708|gb|ACF85938.1| unknown [Zea mays]
gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
gi|223948553|gb|ACN28360.1| unknown [Zea mays]
Length = 401
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + A+
Sbjct: 169 WERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTT-----------AE 217
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 218 ELLEKELPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI- 275
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 276 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|413955874|gb|AFW88523.1| 30S ribosomal protein S1 [Zea mays]
Length = 401
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + GK+ G N GG++ L GF+PF Q+S + A+
Sbjct: 169 WERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTT-----------AE 217
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 218 ELLEKELPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI- 275
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 276 -----GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 321
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S + KE
Sbjct: 109 WERVRQLQAEDATVRSAVFATNRGGALVRIEGLRGFIPGSHIS-TRVTKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + +++ V ++ +G + YGAFI +
Sbjct: 158 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 268
>gi|294102013|ref|YP_003553871.1| RNA binding S1 domain-containing protein [Aminobacterium
colombiense DSM 12261]
gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
12261]
Length = 503
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 26/164 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V F+L GF+P ++ P K G + VK+++ + ++LV
Sbjct: 136 GGLMVNCFNLEGFIPISHLAEEGRGVNPGK--------FVGEVFDVKLLEKDRRKRRLVL 187
Query: 173 SEK----DAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + +AV NK+ + V+ DI GR +GAFI+L DGL VH+SE
Sbjct: 188 SRRMLVEEAVEEQRNKFYTTVSEGDILEGRVSSITSFGAFINLGPIDGL------VHISE 241
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+SW ++++ +G+ V+VKVI I++E +R++LSIKQ + DP
Sbjct: 242 LSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSLSIKQTQPDP 285
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I EG++ G + + G + ++S + K P++ + + G + V
Sbjct: 210 EGDILEGRVSSITSFGAFINLGPIDGLVHISELSWKRNVK-PKEVVKK------GETVKV 262
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 210
KVI +E ++ S K W+ + D G D+GAF+ + P
Sbjct: 263 KVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIGDKASGVVTNVTDFGAFVEV-GPG--- 318
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+ ++SW I+ RD+L +G V V V+ +D EK R++L KQL DP
Sbjct: 319 -IEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKKRMSLGYKQL-NDP 370
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 153 GSIISVKVIQANEEMKK--LVFSEKDAVWNKYSSR-VNVEDIFVG----RDYGAFIHLRF 205
G + V V+ + E K+ L + + + W R +DI V D+GAF+ +
Sbjct: 343 GQNVEVVVLDVDAEKKRMSLGYKQLNDPWTGIEERYTKGQDITVKVVRLADFGAFVEVE- 401
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GL+H+S++S + D+L+EG+EV +VI+I+ + R+ LSI L E+ +
Sbjct: 402 ----EGVEGLIHISQLSTKRVDKPEDVLSEGEEVLARVIEINPAERRMRLSISALFEEEI 457
Query: 266 LETLEK 271
+ E+
Sbjct: 458 RKNREE 463
>gi|161511183|ref|NP_777906.2| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|38503269|sp|Q89AJ3.2|RS1_BUCBP RecName: Full=30S ribosomal protein S1
Length = 566
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AYK+S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLTLEQAYKDSKTVV-GLINGKVKGGFTVELEDIRAFLPGSLVD----IRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFV 193
++++H L G + KVI+ +++ +V S + + ++Y++ N+ E + V
Sbjct: 141 VRETMH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIV 195
Query: 194 G------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDEV++K++K D
Sbjct: 196 SGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEK 271
REK R++L +KQL +DP + E+
Sbjct: 250 REKIRVSLGLKQLSDDPWTKISER 273
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G++ G V V G + +M ++ P K + S++ V ++
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQ------VNSVVKVMILDI 335
Query: 164 NEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K + W ++S + N VG+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITDFGIFIGLEGS-----IDGL 390
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ ++ +G+EV V+++D ++ RI+L IKQL+EDP
Sbjct: 391 VHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPF 441
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I G ++ G V + G L M+ K P + ++ G +
Sbjct: 190 QEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------IGDEVK 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 243 IKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ + +P +E
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWME 356
>gi|27904178|gb|AAO27011.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 576
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AYK+S + G I G GG V + FLP + +
Sbjct: 96 REKAKRHEAWLTLEQAYKDSKTVV-GLINGKVKGGFTVELEDIRAFLPGSLVD----IRP 150
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFV 193
++++H L G + KVI+ +++ +V S + + ++Y++ N+ E + V
Sbjct: 151 VRETMH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIV 205
Query: 194 G------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDEV++K++K D
Sbjct: 206 SGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFD 259
Query: 248 REKSRITLSIKQLEEDPLLETLEK 271
REK R++L +KQL +DP + E+
Sbjct: 260 REKIRVSLGLKQLSDDPWTKISER 283
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K + S++ V ++ +EE +++ K + W
Sbjct: 312 GLVHVSEMDWTNKNIHPSKMVQ------VNSVVKVMILDIDEERRRISLGLKQCKNNPWM 365
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++S + N VG+ D+G FI L + GLVH+S++SW++ ++
Sbjct: 366 EFSKKYNKGSHVVGKIKSITDFGIFIGLEGS-----IDGLVHLSDISWNISGEESVKKYK 420
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+++D ++ RI+L IKQL+EDP
Sbjct: 421 KGEEVLAVVLQVDPDRERISLGIKQLQEDPF 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I G ++ G V + G L M+ K P + ++ G +
Sbjct: 200 QEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------IGDEVK 252
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+K+++ + E ++ K D W K S R + GR DYG F+ + +G+
Sbjct: 253 IKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE--EGV 310
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ + +P +E
Sbjct: 311 ---EGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWME 366
>gi|443327874|ref|ZP_21056481.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442792485|gb|ELS01965.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 364
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 110 WERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISA-----------REAKE 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 159 DLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLE 269
>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 392
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S + + KE
Sbjct: 109 WERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS-TRAAKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 158 DLVAQELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D ++ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|425437110|ref|ZP_18817537.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|425449492|ref|ZP_18829331.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|425471179|ref|ZP_18850039.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440754860|ref|ZP_20934062.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|389677991|emb|CCH93122.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|389763766|emb|CCI09762.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|389882968|emb|CCI36602.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440175066|gb|ELP54435.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
Length = 330
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|425463814|ref|ZP_18843144.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
gi|389829070|emb|CCI29843.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
Length = 330
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|269214552|ref|ZP_06158646.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
gi|269209601|gb|EEZ76056.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
Length = 326
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLP------FPQMSPSH-SCKEPQKSIHEIAKGLTGSIISVK-VIQA- 163
GGL V S+ FLP P SH KE + + ++ K ++S + V++A
Sbjct: 119 GGLTVMVNSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEAT 178
Query: 164 -NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE K L+ + ++ K V++I DYGAF+ L DGL H+T L +
Sbjct: 179 LGEERKALLENLQEGAIIKGV----VKNIT---DYGAFVDLGGIDGLLHITDL------A 225
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 226 WRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WNGLTRRYPQGTRLFGK 284
>gi|425459139|ref|ZP_18838625.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443654187|ref|ZP_21131250.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389823195|emb|CCI28787.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443333859|gb|ELS48397.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|416187686|ref|ZP_11614298.1| ribosomal protein S1 [Neisseria meningitidis M0579]
gi|325136195|gb|EGC58803.1| ribosomal protein S1 [Neisseria meningitidis M0579]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESSEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|254805102|ref|YP_003083323.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
gi|254668644|emb|CBA06288.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|422301965|ref|ZP_16389329.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
gi|389788948|emb|CCI15121.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
Length = 330
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|161870174|ref|YP_001599344.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
gi|385324031|ref|YP_005878470.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
gi|385338154|ref|YP_005892027.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
gi|421559129|ref|ZP_16005004.1| ribosomal protein S1 [Neisseria meningitidis 92045]
gi|421565635|ref|ZP_16011408.1| ribosomal protein S1 [Neisseria meningitidis NM3081]
gi|421567653|ref|ZP_16013387.1| ribosomal protein S1 [Neisseria meningitidis NM3001]
gi|433473698|ref|ZP_20431059.1| ribosomal protein S1 [Neisseria meningitidis 97021]
gi|433475163|ref|ZP_20432504.1| ribosomal protein S1 [Neisseria meningitidis 88050]
gi|433482262|ref|ZP_20439522.1| ribosomal protein S1 [Neisseria meningitidis 2006087]
gi|433484245|ref|ZP_20441471.1| ribosomal protein S1 [Neisseria meningitidis 2002038]
gi|433486512|ref|ZP_20443707.1| ribosomal protein S1 [Neisseria meningitidis 97014]
gi|433513625|ref|ZP_20470415.1| ribosomal protein S1 [Neisseria meningitidis 63049]
gi|433515911|ref|ZP_20472679.1| ribosomal protein S1 [Neisseria meningitidis 2004090]
gi|433517698|ref|ZP_20474444.1| ribosomal protein S1 [Neisseria meningitidis 96023]
gi|433524124|ref|ZP_20480785.1| ribosomal protein S1 [Neisseria meningitidis 97020]
gi|433528373|ref|ZP_20484982.1| ribosomal protein S1 [Neisseria meningitidis NM3652]
gi|433530574|ref|ZP_20487163.1| ribosomal protein S1 [Neisseria meningitidis NM3642]
gi|433532843|ref|ZP_20489406.1| ribosomal protein S1 [Neisseria meningitidis 2007056]
gi|433534698|ref|ZP_20491238.1| ribosomal protein S1 [Neisseria meningitidis 2001212]
gi|433536923|ref|ZP_20493428.1| ribosomal protein S1 [Neisseria meningitidis 77221]
gi|161595727|gb|ABX73387.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
gi|261392418|emb|CAX49960.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
gi|319410568|emb|CBY90937.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
gi|402336524|gb|EJU71784.1| ribosomal protein S1 [Neisseria meningitidis 92045]
gi|402343686|gb|EJU78832.1| ribosomal protein S1 [Neisseria meningitidis NM3001]
gi|402344070|gb|EJU79212.1| ribosomal protein S1 [Neisseria meningitidis NM3081]
gi|432209996|gb|ELK65962.1| ribosomal protein S1 [Neisseria meningitidis 97021]
gi|432210981|gb|ELK66936.1| ribosomal protein S1 [Neisseria meningitidis 88050]
gi|432216055|gb|ELK71938.1| ribosomal protein S1 [Neisseria meningitidis 2006087]
gi|432220931|gb|ELK76748.1| ribosomal protein S1 [Neisseria meningitidis 2002038]
gi|432221797|gb|ELK77601.1| ribosomal protein S1 [Neisseria meningitidis 97014]
gi|432247157|gb|ELL02596.1| ribosomal protein S1 [Neisseria meningitidis 63049]
gi|432252837|gb|ELL08187.1| ribosomal protein S1 [Neisseria meningitidis 2004090]
gi|432253434|gb|ELL08778.1| ribosomal protein S1 [Neisseria meningitidis 96023]
gi|432259368|gb|ELL14639.1| ribosomal protein S1 [Neisseria meningitidis 97020]
gi|432265174|gb|ELL20370.1| ribosomal protein S1 [Neisseria meningitidis NM3652]
gi|432266666|gb|ELL21848.1| ribosomal protein S1 [Neisseria meningitidis 2007056]
gi|432267081|gb|ELL22262.1| ribosomal protein S1 [Neisseria meningitidis NM3642]
gi|432271440|gb|ELL26565.1| ribosomal protein S1 [Neisseria meningitidis 2001212]
gi|432273859|gb|ELL28956.1| ribosomal protein S1 [Neisseria meningitidis 77221]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 572
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKS----IH 145
K AYK SG G I G GG V+ ++V FLP Q P+ +
Sbjct: 104 KVENAYK-SGEPVTGTILGETKGGYNVKLLNVVPAFLPGSQSGIRRGRPIPEGEQEFKVI 162
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRF 205
K G+ I V + EE K F +A+ + +E I +D+GAF+ L
Sbjct: 163 NFRKKKRGTNIVVSLTAFKEEKVKAYF---EALETGSTVEGTIESI---KDFGAFVRL-- 214
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GL+ SEVSWD Q + D+LN GD+V VKVI +D EK +I+LS+KQL+EDP
Sbjct: 215 ---TNEVVGLIPASEVSWDPSQKVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQEDP- 270
Query: 266 LETLEKVIPQG 276
T+E+ P G
Sbjct: 271 WNTVEEKYPVG 281
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 39/214 (18%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFS-LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSII 156
E+G EG I+ G VR + +VG +P ++S +P + +H++ G +
Sbjct: 193 ETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSW-----DPSQKVHDVLN--VGDKV 245
Query: 157 SVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDG 208
+VKVI + E KK+ S K + WN + V + G +G F+ +
Sbjct: 246 TVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIE---- 301
Query: 209 LYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVH+SEV W ++ +D+++++ EGD V+VK+ ID+EK ++LS ++ DP
Sbjct: 302 -PGVEGLVHISEVFWGNVRRDLKELIREGDRVKVKIKDIDKEKRTLSLSYREALGDPWDN 360
Query: 268 TLE-------------KVIPQG----LEPYLKSF 284
E KV+P G LE Y+ F
Sbjct: 361 IEEKYKVGEIVDGKVVKVLPTGAIVELEEYVSGF 394
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + VK+ ++E + L S ++A+ W+ + V +I G+ GA + L
Sbjct: 329 GDRVKVKIKDIDKEKRTLSLSYREALGDPWDNIEEKYKVGEIVDGKVVKVLPTGAIVELE 388
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+++G V VSE+SW+ + + D++ E EV+ K++ ID+E R+ LS+KQ EDP
Sbjct: 389 -----EYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDP 443
>gi|385328569|ref|YP_005882872.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
gi|308389421|gb|ADO31741.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
gi|389605586|emb|CCA44503.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha522]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|418288473|ref|ZP_12900955.1| ribosomal protein S1 [Neisseria meningitidis NM233]
gi|418290719|ref|ZP_12902841.1| ribosomal protein S1 [Neisseria meningitidis NM220]
gi|372201127|gb|EHP15090.1| ribosomal protein S1 [Neisseria meningitidis NM220]
gi|372201816|gb|EHP15696.1| ribosomal protein S1 [Neisseria meningitidis NM233]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|425438866|ref|ZP_18819204.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|425445803|ref|ZP_18825823.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|425454554|ref|ZP_18834284.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
gi|389716744|emb|CCH99046.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|389734101|emb|CCI02187.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|389804745|emb|CCI16018.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
Length = 330
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|416161433|ref|ZP_11606398.1| ribosomal protein S1 [Neisseria meningitidis N1568]
gi|325128402|gb|EGC51285.1| ribosomal protein S1 [Neisseria meningitidis N1568]
Length = 559
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 282
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 271 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 323
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 382
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 383 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 438
Query: 264 PL 265
P
Sbjct: 439 PF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355
>gi|421863294|ref|ZP_16294993.1| 30S ribosomal protein S1 [Neisseria lactamica Y92-1009]
gi|309379231|emb|CBX22188.1| 30S ribosomal protein S1 [Neisseria lactamica Y92-1009]
Length = 326
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 24/234 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLP------FPQMSPSH-SCKEPQKSIHEIAKGLTGSIISVK-VIQA- 163
GGL V S+ FLP P SH KE + + ++ K ++S + V++A
Sbjct: 119 GGLTVMVNSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEAT 178
Query: 164 -NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE K L+ + ++ K V++I DYGAF+ L DGL H+T L +
Sbjct: 179 LGEERKALLENLQEGAIIKGV----VKNIT---DYGAFVDLGGIDGLLHITDL------A 225
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
W ++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG
Sbjct: 226 WRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WNGLTRRYPQG 278
>gi|428217034|ref|YP_007101499.1| 30S ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
gi|427988816|gb|AFY69071.1| SSU ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
Length = 391
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEIA 148
W+ R +E I N GG LVR L GF+P SH S ++P++
Sbjct: 109 WERVRQLQEEDATVRSLIFATNRGGALVRIEGLRGFIPG-----SHISTRKPKED----- 158
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHL 203
L G + +K ++ +E+ +LV S + A+ NK V + G + YGAFI +
Sbjct: 159 --LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFIDI 216
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S D I ++ N DEV+V +I +D E+ RI+LS KQLE +
Sbjct: 217 ------GGVSGLLHISEISHDHIDTPHNVFNVNDEVKVMIIDLDAERGRISLSTKQLEAE 270
Query: 264 P 264
P
Sbjct: 271 P 271
>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 424
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ RA ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 229 WEKVRALEKEGKVLQVKVNGFNRGGVTADVEGLRGFIPRSQLQEGEN--------HE--- 277
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A + V + G + YG F+ L
Sbjct: 278 ALVGKTLGVAFLEVNPETRKLVLSEKKAATAAIFQNLEVGQLVEGQVVSVKPYGLFVDL- 336
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++D+R++ +GD V+ + ++D + RI L+ LE P
Sbjct: 337 -----GGISGLLHQSVITGGQMRDLREVFGQGDRVKALITELDPGRGRIALNTALLEGQP 391
>gi|390442071|ref|ZP_10230090.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
gi|389834605|emb|CCI34216.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
Length = 358
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S E +
Sbjct: 137 WERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 185
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 186 DLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDIG 245
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 246 ------GVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 299
>gi|385855361|ref|YP_005901874.1| 30S ribosomal protein S1 [Neisseria meningitidis M01-240355]
gi|325204302|gb|ADY99755.1| ribosomal protein S1 [Neisseria meningitidis M01-240355]
Length = 559
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 282
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 301 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 354
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 355 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 409
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 410 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355
>gi|421540558|ref|ZP_15986703.1| ribosomal protein S1 [Neisseria meningitidis 93004]
gi|402318712|gb|EJU54228.1| ribosomal protein S1 [Neisseria meningitidis 93004]
Length = 561
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
gi|385857372|ref|YP_005903884.1| 30S ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
gi|421554905|ref|ZP_16000844.1| ribosomal protein S1 [Neisseria meningitidis 98008]
gi|433465249|ref|ZP_20422731.1| ribosomal protein S1 [Neisseria meningitidis NM422]
gi|433467450|ref|ZP_20424904.1| ribosomal protein S1 [Neisseria meningitidis 87255]
gi|433488586|ref|ZP_20445748.1| ribosomal protein S1 [Neisseria meningitidis M13255]
gi|433490629|ref|ZP_20447755.1| ribosomal protein S1 [Neisseria meningitidis NM418]
gi|433492701|ref|ZP_20449794.1| ribosomal protein S1 [Neisseria meningitidis NM586]
gi|433494835|ref|ZP_20451903.1| ribosomal protein S1 [Neisseria meningitidis NM762]
gi|433497002|ref|ZP_20454040.1| ribosomal protein S1 [Neisseria meningitidis M7089]
gi|433499064|ref|ZP_20456073.1| ribosomal protein S1 [Neisseria meningitidis M7124]
gi|433501040|ref|ZP_20458026.1| ribosomal protein S1 [Neisseria meningitidis NM174]
gi|433503217|ref|ZP_20460178.1| ribosomal protein S1 [Neisseria meningitidis NM126]
gi|433504927|ref|ZP_20461866.1| ribosomal protein S1 [Neisseria meningitidis 9506]
gi|433507312|ref|ZP_20464220.1| ribosomal protein S1 [Neisseria meningitidis 9757]
gi|433509595|ref|ZP_20466464.1| ribosomal protein S1 [Neisseria meningitidis 12888]
gi|433511518|ref|ZP_20468345.1| ribosomal protein S1 [Neisseria meningitidis 4119]
gi|81784541|sp|Q9JZ44.1|RS1_NEIMB RecName: Full=30S ribosomal protein S1
gi|7226541|gb|AAF41676.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
gi|325208261|gb|ADZ03713.1| ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
gi|402332058|gb|EJU67389.1| ribosomal protein S1 [Neisseria meningitidis 98008]
gi|432202284|gb|ELK58348.1| ribosomal protein S1 [Neisseria meningitidis 87255]
gi|432203193|gb|ELK59247.1| ribosomal protein S1 [Neisseria meningitidis NM422]
gi|432223419|gb|ELK79200.1| ribosomal protein S1 [Neisseria meningitidis M13255]
gi|432227620|gb|ELK83329.1| ribosomal protein S1 [Neisseria meningitidis NM418]
gi|432228487|gb|ELK84187.1| ribosomal protein S1 [Neisseria meningitidis NM586]
gi|432230038|gb|ELK85717.1| ribosomal protein S1 [Neisseria meningitidis NM762]
gi|432233495|gb|ELK89122.1| ribosomal protein S1 [Neisseria meningitidis M7089]
gi|432234898|gb|ELK90518.1| ribosomal protein S1 [Neisseria meningitidis M7124]
gi|432236331|gb|ELK91940.1| ribosomal protein S1 [Neisseria meningitidis NM174]
gi|432239982|gb|ELK95526.1| ribosomal protein S1 [Neisseria meningitidis NM126]
gi|432241052|gb|ELK96582.1| ribosomal protein S1 [Neisseria meningitidis 9506]
gi|432241677|gb|ELK97206.1| ribosomal protein S1 [Neisseria meningitidis 9757]
gi|432246983|gb|ELL02429.1| ribosomal protein S1 [Neisseria meningitidis 12888]
gi|432247566|gb|ELL03003.1| ribosomal protein S1 [Neisseria meningitidis 4119]
Length = 561
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|313668440|ref|YP_004048724.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
gi|313005902|emb|CBN87358.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
Length = 595
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 93 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 152
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 153 GGLTVMVNSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 208
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ + DYGAF+ L DGL H+T L +W
Sbjct: 209 -LEATLGEERKALLENLQEGAIIKGVVKNITDYGAFVDLGGIDGLLHITDL------AWR 261
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 262 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WNGLTRRYPQGTRLFGK 318
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 307 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 359
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 360 GDEVEVMILEIDENRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGIFVGL- 418
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 419 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 474
Query: 264 PL 265
P
Sbjct: 475 PF 476
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G ++ G V + G L ++ K P + + G +
Sbjct: 225 QEGAIIKGVVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 277
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + WN + R G+ DYGAF+ +
Sbjct: 278 AKVLKFDQEKQRVSLGMKQLGEDPWNGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 332
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 333 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDENRRRISLGMKQCQANPWEE 391
>gi|121635013|ref|YP_975258.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
gi|120866719|emb|CAM10472.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
Length = 570
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 68 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 127
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 128 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 184 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 236
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 237 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 293
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 282 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 334
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 393
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 394 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 449
Query: 264 PL 265
P
Sbjct: 450 PF 451
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 200 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRR-VKHPSEVLE------VGQEVE 252
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 253 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 307
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 308 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366
>gi|304387393|ref|ZP_07369585.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
gi|304338644|gb|EFM04762.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
Length = 589
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 87 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 146
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 147 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 202
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 203 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 255
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 256 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 312
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 301 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 353
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 354 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 412
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 413 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 468
Query: 264 PL 265
P
Sbjct: 469 PF 470
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 219 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 271
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 272 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 326
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 327 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 385
>gi|322832232|ref|YP_004212259.1| 30S ribosomal protein S1 [Rahnella sp. Y9602]
gi|321167433|gb|ADW73132.1| ribosomal protein S1 [Rahnella sp. Y9602]
Length = 569
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWITLEKAYEESATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTLH-----LEGKDLEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 362 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 416
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 417 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKNNP 365
>gi|308801265|ref|XP_003077946.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
(ISS) [Ostreococcus tauri]
gi|116056397|emb|CAL52686.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
(ISS) [Ostreococcus tauri]
Length = 345
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 15/197 (7%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHE-- 146
+A A +G G+++ N GG+++R FLP QM + S E
Sbjct: 63 RAIDAIDAAGGRLTGRVEVVNRGGVILRATPGGFTAFLPKSQMRSTRLRGGRGGSASEAD 122
Query: 147 ---IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV---NVEDIFVGR--DYG 198
+G G +I VK++ + ++V SE+ + ++ V+++ V D+G
Sbjct: 123 EMKTLEGQIGKLIDVKLMDCS--GNRIVVSERALLQEGAVEKLPAGEVKEVVVTSLSDFG 180
Query: 199 AFIHLRFPDGLYH-LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
AF+ + G L GLVH+SE+SW+ I RD + G VKV++++ E RI SI
Sbjct: 181 AFVEVCDGQGAASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNGETGRINFSI 240
Query: 258 KQLEEDPLLETLEKVIP 274
KQ + DPL+ETLE ++P
Sbjct: 241 KQTQADPLMETLETIMP 257
>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
Length = 363
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARA-YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E K YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEEMAAK--YKQML 345
>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
Length = 675
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 29/207 (14%)
Query: 73 DSSDANNRQSQSRSSA--DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
D + N S R +WK + ++ E K+ GGL+ ++ F+P Q
Sbjct: 351 DDGEGNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQ 410
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYS 183
++ +H K+ K + G + KV+ +E+ ++LV S E+ + +K
Sbjct: 411 VT-THFVKDLSKYV--------GETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAW 461
Query: 184 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+ V + G+ D+GAFI L DGL +H+S++SW+ I+ D+L GDE
Sbjct: 462 ENITVGETITGKVQRLTDFGAFIDLGGVDGL------LHISDISWNRIESPEDVLKVGDE 515
Query: 239 VRVKVIKIDREKSRITLSIKQLEEDPL 265
+ V+K +REK+RI+L +KQL++ P
Sbjct: 516 IETLVLKANREKNRISLGLKQLQQKPF 542
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G GK+Q G + + G L +S + + P+ + G I
Sbjct: 467 GETITGKVQRLTDFGAFIDLGGVDGLLHISDISWNR-IESPEDVLK------VGDEIETL 519
Query: 160 VIQANEEMKKLVFSEK-------DA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYH 211
V++AN E ++ K DA V N + V ++ D+GAF+ L +G+
Sbjct: 520 VLKANREKNRISLGLKQLQQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKL--AEGI-- 575
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+S + + D LN GD V+VK+++I+ EK RI LS+K L P
Sbjct: 576 -EGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIALSMKALLPKP 627
>gi|384257335|ref|YP_005401269.1| 30S ribosomal protein S1 [Rahnella aquatilis HX2]
gi|380753311|gb|AFE57702.1| 30S ribosomal protein S1 [Rahnella aquatilis HX2]
Length = 557
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEESATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKDLEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 363
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEE--MAAKYKQML 345
>gi|383189455|ref|YP_005199583.1| 30S ribosomal protein S1 [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371587713|gb|AEX51443.1| ribosomal protein S1 [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 569
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWITLEKAYEESATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTLH-----LEGKDLEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 362 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 416
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 417 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKNNP 365
>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9301]
Length = 363
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARA-YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGNVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEE--MAAKYKQML 345
>gi|385340209|ref|YP_005894081.1| 30S ribosomal protein S1 [Neisseria meningitidis G2136]
gi|385341782|ref|YP_005895653.1| 30S ribosomal protein S1 [Neisseria meningitidis M01-240149]
gi|385853069|ref|YP_005899583.1| 30S ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|416191956|ref|ZP_11616337.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
gi|325138272|gb|EGC60841.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
gi|325198453|gb|ADY93909.1| ribosomal protein S1 [Neisseria meningitidis G2136]
gi|325200073|gb|ADY95528.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|325201988|gb|ADY97442.1| ribosomal protein S1 [Neisseria meningitidis M01-240149]
Length = 559
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 282
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 271 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 323
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 382
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 383 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 438
Query: 264 PL 265
P
Sbjct: 439 PF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355
>gi|296314512|ref|ZP_06864453.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
gi|296838822|gb|EFH22760.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
Length = 561
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVGIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|416177928|ref|ZP_11610297.1| ribosomal protein S1 [Neisseria meningitidis M6190]
gi|416196380|ref|ZP_11618150.1| ribosomal protein S1 [Neisseria meningitidis CU385]
gi|427827973|ref|ZP_18994992.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|254673142|emb|CBA07943.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha275]
gi|316984099|gb|EFV63077.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|325132498|gb|EGC55191.1| ribosomal protein S1 [Neisseria meningitidis M6190]
gi|325140474|gb|EGC62995.1| ribosomal protein S1 [Neisseria meningitidis CU385]
Length = 589
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 87 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 146
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 147 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 202
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 203 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 255
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 256 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 312
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 301 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 353
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 354 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 412
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 413 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 468
Query: 264 PL 265
P
Sbjct: 469 PF 470
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 219 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 271
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 272 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 326
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 327 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 385
>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC729]
Length = 363
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEE--MAAKYKQML 345
>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 363
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEE--MAAKYKQML 345
>gi|307130806|ref|YP_003882822.1| 30S ribosomal protein S1 [Dickeya dadantii 3937]
gi|313104175|sp|P37985.2|RS1_DICD3 RecName: Full=30S ribosomal protein S1
gi|306528335|gb|ADM98265.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
Length = 557
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEESATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +++ GDE+ K +DR+ ++LSI+
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|349573679|ref|ZP_08885653.1| 30S ribosomal protein S1 [Neisseria shayeganii 871]
gi|348014733|gb|EGY53603.1| 30S ribosomal protein S1 [Neisseria shayeganii 871]
Length = 565
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW E+G I G I G
Sbjct: 63 GELEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMENGDILSGVINGKVK 122
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 123 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEVEFKVIKLDKKRNNVVVSRRAV---- 178
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
+++ + E+ A+ V+ I DYGAF+ L DGL H+T L +W
Sbjct: 179 -LEETLGEERQALLENLQEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 231
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+E+SR++L +KQL EDP
Sbjct: 232 RVKHPSEVLEVGQEVEAKVLKFDQERSRVSLGMKQLGEDP 271
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEI 147
W AR Y ++ GK+ G V + G + +M ++ P K +
Sbjct: 272 WNGLARRYPARTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ-- 328
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGA 199
G + V ++ +E+ +++ K W ++ + N D G D+G
Sbjct: 329 ----LGDEVEVMILDIDEDRRRISLGMKQCQANPWEEFEAGFNKGDKIKGAVKSITDFGV 384
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+ L P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IK
Sbjct: 385 FVGL--PG---NIDGLVHLSDLSWSESGEEAVRKYKKGEEVEAVVLSIDVEKERISLGIK 439
Query: 259 QLEEDPL 265
QLE DP
Sbjct: 440 QLEGDPF 446
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 195 QEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRR-VKHPSEVLE------VGQEVE 247
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E ++ K + WN + R G+ DYGAF+ +
Sbjct: 248 AKVLKFDQERSRVSLGMKQLGEDPWNGLARRYPARTRLFGKVTNLTDYGAFVEIE----- 302
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V ++ ID ++ RI+L +KQ + +P E
Sbjct: 303 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILDIDEDRRRISLGMKQCQANPWEE 361
>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 331
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 110 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 159 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N D ++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDALKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|225025738|ref|ZP_03714930.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
23834]
gi|224941519|gb|EEG22728.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
23834]
Length = 583
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A ESG I G I G
Sbjct: 82 GELEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWLALEEAMESGEILSGVINGKVK 141
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ + ++S + +
Sbjct: 142 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEVEFKVIKLDRKRNNVVVSRRAV---- 197
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
+++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 198 -LEETLGEERQALLETLQEGTVVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 250
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+++SR++L +KQL EDP
Sbjct: 251 RVKHPSEVLEVGQEVEAKVLKFDQDRSRVSLGMKQLGEDP 290
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ++ GK+ G V + G + +M ++ P K +
Sbjct: 295 ARRYPARTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 347
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V ++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 348 LGDEVEVMILDIDEDRRRISLGMKQCQANPWEEFAANFNKGDKLTGAVKSITDFGIFVGL 407
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G++V V+ ID EK RI+L IKQLE
Sbjct: 408 --PG---NIDGLVHLSDLSWSESGEEAVRKYKKGEDVEAVVLSIDVEKERISLGIKQLEG 462
Query: 263 DPL 265
DP
Sbjct: 463 DPF 465
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 214 QEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 266
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ ++ K + W+ + R G+ DYGAF+ +
Sbjct: 267 AKVLKFDQDRSRVSLGMKQLGEDPWSGLARRYPARTRLFGKVTNLTDYGAFVEIE----- 321
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V ++ ID ++ RI+L +KQ + +P E
Sbjct: 322 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILDIDEDRRRISLGMKQCQANPWEE 380
>gi|242239665|ref|YP_002987846.1| 30S ribosomal protein S1 [Dickeya dadantii Ech703]
gi|242131722|gb|ACS86024.1| ribosomal protein S1 [Dickeya dadantii Ech703]
Length = 557
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEESATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
AS9601]
Length = 363
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 28/208 (13%)
Query: 90 WKAARA-YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISARR-----------IK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 ------GGVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E K YK+M+
Sbjct: 320 PGDMLTDPQKVFSKAEEMAAK--YKQML 345
>gi|83647658|ref|YP_436093.1| 30S ribosomal protein S1 [Hahella chejuensis KCTC 2396]
gi|83635701|gb|ABC31668.1| ribosomal protein S1 [Hahella chejuensis KCTC 2396]
Length = 559
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R+ A WK E+ + G I G GG V + FLP +
Sbjct: 86 REKAKRAEA-WKDLEKAFEANEVVNGVINGKVKGGFTVELGGIRAFLPGSLVDV------ 138
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ I + A L G + KVI+ +++ +V S E+DA+ + V
Sbjct: 139 --RPIRDTAH-LEGKDLEFKVIKLDQKRNNVVVSRRAVLEAENSAERDALLQTLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEK 271
RE++R++L +KQL EDP + E+
Sbjct: 250 RERNRVSLGLKQLGEDPWVAIKER 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------LGDELEVMVLDIDEERRRISLGIKQCHANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDIL 233
++S + N D G+ D+G F+ L + GLVH+S++SW+ + +R
Sbjct: 356 EFSGKFNKGDRISGKIKSITDFGIFLGLE-----GGIDGLVHLSDISWNEPGEEAVRK-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GD++ ++ ID E+ RI+L IKQLE DP E
Sbjct: 410 KKGDDLETVILSIDPERERISLGIKQLESDPFAE 443
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAERDALLQTLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I+VKV++ + E ++ K A+ +Y V
Sbjct: 234 IVN------VGDEITVKVLKFDRERNRVSLGLKQLGEDPWVAIKERYPENTRVTARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDE+ V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQLGDELEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L IKQ +P E
Sbjct: 342 ISLGIKQCHANPWEE 356
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EGDEV K+I +DR+ I LSIK
Sbjct: 478 LKASEISRDKVEDARNVLKEGDEVEAKIISVDRKNRVINLSIK 520
>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9515]
Length = 363
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +I
Sbjct: 158 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISA-----------RKIK 205
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
+ L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 206 EDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 265
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 266 G------GVSGLLHISEISHEHIETPHNVLNVTDQMKVMIIDLDSERGRISLSTKALEPE 319
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 320 PGDMLTDPQKVFDKAEE--MAAKYKQML 345
>gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
Length = 675
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK + ++ E K+ GGL+ ++ F+P Q++ +H K+ K +
Sbjct: 369 NWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVT-THFVKDLSKYV---- 423
Query: 149 KGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----D 196
G + KV+ +E+ ++LV S E+ + +K + V + G+ D
Sbjct: 424 ----GETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWENITVGEKITGKVQRLTD 479
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAFI L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L
Sbjct: 480 FGAFIDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLG 533
Query: 257 IKQLEEDPL 265
+KQL++ P
Sbjct: 534 LKQLQQKPF 542
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GK+Q G + + G L +S + + P+ + G I V++AN
Sbjct: 472 GKVQRLTDFGAFIDLGGVDGLLHISDISWNR-IESPEDVLK------VGDEIETLVLKAN 524
Query: 165 EEMKKLVFSEK-------DA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
E ++ K DA V N + V ++ D+GAF+ L +G+ GLV
Sbjct: 525 REKNRISLGLKQLQQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKL--AEGI---EGLV 579
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
HVSE+S + + D LN GD V+VK+++I+ EK RI LS+K L P
Sbjct: 580 HVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIALSMKALLPKP 627
>gi|417926498|ref|ZP_12569896.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
gi|341589013|gb|EGS32380.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
Length = 675
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK + ++ E K+ GGL+ ++ F+P Q++ +H K+ K +
Sbjct: 369 NWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVT-THFVKDLSKYV---- 423
Query: 149 KGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----D 196
G + KV+ +E+ ++LV S E+ + +K + V + G+ D
Sbjct: 424 ----GETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWENITVGEKITGKVQRLTD 479
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAFI L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L
Sbjct: 480 FGAFIDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLG 533
Query: 257 IKQLEEDPL 265
+KQL++ P
Sbjct: 534 LKQLQQKPF 542
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GK+Q G + + G L +S + + P+ + G I V++AN
Sbjct: 472 GKVQRLTDFGAFIDLGGVDGLLHISDISWNR-IESPEDVLK------VGDEIETLVLKAN 524
Query: 165 EEMKKLVFSEK-------DA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
E ++ K DA V N + V ++ D+GAF+ L +G+ GLV
Sbjct: 525 REKNRISLGLKQLQQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKL--AEGI---EGLV 579
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
HVSE+S + + D LN GD V+VK+++I+ EK RI LS+K L P
Sbjct: 580 HVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIALSMKALLPKP 627
>gi|94499395|ref|ZP_01305932.1| ribosomal protein S1 [Bermanella marisrubri]
gi|94428149|gb|EAT13122.1| ribosomal protein S1 [Oceanobacter sp. RED65]
Length = 560
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 30/249 (12%)
Query: 31 SSLVCVNP-LIIERICQRN--LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSS 87
S V VN L E + RN L G+ P ++ + D + + +++ +
Sbjct: 33 SDWVIVNAGLKSEAVIPRNQFLDDNGELEVAVGDEVPVSLEAVEDGFGETKLSREKAKRA 92
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
WK E+ + G I G GG V S+ FLP + + + + H
Sbjct: 93 ESWKELEKAFEAQEVVTGVINGKVKGGFTVDVASIRAFLPGSLVD----VRPVRDTAH-- 146
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-R 195
L G + KVI+ +++ +V S E+D + V I
Sbjct: 147 ---LEGKELEFKVIKLDQKRNNVVVSRRAVLETANSQERDELLANLQEGQEVTGIVKNLT 203
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
DYGAF+ L DGL H+T +++W I+ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIQVKVLKFDRERNRVSL 257
Query: 256 SIKQLEEDP 264
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDDVEVMVLDIDEERRRISLGIKQCQVNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++SS+ N D G+ D+G FI L DG + GLVH+S++SW + +D
Sbjct: 356 EFSSQFNKGDKISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEQGEDAVRNYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ ID E+ RI+L +KQLE DP E
Sbjct: 411 KGDELETIILSIDPERERISLGVKQLERDPFAE 443
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVN------VGDEIQVKVLKFD 249
Query: 165 EEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLV 216
E ++ K A+ +Y V DYG F L + GLV
Sbjct: 250 RERNRVSLGLKQLGEDPWVAIKARYPENTKVTAKVTNLTDYGCFAELE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I ++ GD+V V V+ ID E+ RI+L IKQ + +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVQVGDDVEVMVLDIDEERRRISLGIKQCQVNPWEE 356
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ SE+S D ++D R+ L EGDEV K+I +DR+ I LS+K +E
Sbjct: 478 LRASEISRDRVEDARNALKEGDEVEAKIISVDRKNRNIALSVKSKDE 524
>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
Length = 549
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 28/195 (14%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQ 141
++ +W+ E G I +G+++G GGL+V + FLP SH +P
Sbjct: 79 DKAEQKKNWENIITKCEEGSIVQGRVKGKVKGGLIV-AMGVDAFLP-----ASHIDIQPP 132
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVG 194
K++ + G KV++ N E K +V S ++ + + +S RVN D+ G
Sbjct: 133 KNLDQ----YIGQTYDYKVLKINLERKNIVLSRRELIEEQRASKRRDLLERVNPGDVVKG 188
Query: 195 -----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
D+GAFI L DG+ GL+H++++SW I ++L +G+E+ V +I+I+RE
Sbjct: 189 VVKNITDFGAFIDL---DGM---DGLLHITDMSWGRISHPSEMLKQGEEIDVMIIEINRE 242
Query: 250 KSRITLSIKQLEEDP 264
K R++L +KQ + +P
Sbjct: 243 KERVSLGLKQTKSNP 257
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 14/97 (14%)
Query: 167 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 221
MK+L D W R + D+ G +GAF+ L+ H+ GLVH+S++
Sbjct: 424 MKQLA----DDPWEDIDGRFRIGDVVSGTISKITSFGAFVELQ-----DHIDGLVHISQI 474
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
S + ++ I+D+++ G EV +VIKIDRE+ R+ LSIK
Sbjct: 475 SEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIK 511
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 33/180 (18%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGLTG 153
G + +G ++ G + + G L MS PS K+ G
Sbjct: 183 GDVVKGVVKNITDFGAFIDLDGMDGLLHITDMSWGRISHPSEMLKQ-------------G 229
Query: 154 SIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
I V +I+ N E +++ K W ++ V G+ YGAFI +
Sbjct: 230 EEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPVGAKVAGKVVNLVPYGAFIEIE- 288
Query: 206 PDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHV+E+SW I ++L GDEV V+ I +++ +I+L I+QL+ +P
Sbjct: 289 ----EGVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNP 344
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAF+ L + G+VHVS++SW I ++L + DE+ V+ +D RI+L
Sbjct: 368 YGAFVELE-----EGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISL 422
Query: 256 SIKQLEEDP 264
+KQL +DP
Sbjct: 423 GMKQLADDP 431
>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I N GG +V L GF+PF Q+S + + P++ L I +K +
Sbjct: 192 VVRGTILSSNSGGFVVAVEGLRGFVPFSQIS-AVTQSNPEE--------LLNKEIPLKFL 242
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLV 216
+ +EE +LV S + A + + S + + VG + YGAFI + ++GL+
Sbjct: 243 EVDEERTRLVLSNRKATFAESQSAFGIGSVVVGTVQTVKPYGAFIDIG------GVSGLL 296
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+S++S D + + +L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 297 HISQISHDRLTSVETVLSPGDKLKVMVLSQDKDRGRISLSTKKLEPTP 344
>gi|406882756|gb|EKD30481.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 397
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSHSCK----EPQKSIHEIAKGLTGSIISVKVIQANEE 166
N GGLL+ + GF+P Q++P + + P+K + + + L G V+VI +++
Sbjct: 119 NKGGLLIDLDGIKGFIPVSQLTPMNYPRVEGANPEKILEHLGR-LVGKPFKVRVINVDQD 177
Query: 167 MKKLVFSEKDAVWNKYSS---RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHV 218
KK++FSEK A+ ++ + D G YG FI L GLVHV
Sbjct: 178 GKKIIFSEKAALEEARGESLKKLKIGDTVDGSVSGILTYGLFITFN------GLEGLVHV 231
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
SE+ W + D GD+VRV+VI ID +K I+LS+K+L+ +P
Sbjct: 232 SEIDWGHVSDPSKFAKVGDKVRVQVIGIDADK--ISLSMKRLKANP 275
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +G + G GL + F L G + ++ H +P K ++ + +I +
Sbjct: 203 GDTVDGSVSGILTYGLFITFNGLEGLVHVSEIDWGH-VSDPSK-FAKVGDKVRVQVIGID 260
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF---VGR--DYGAFIHLRFPDGLYHLTG 214
+ + MK+L K W + + + DI V R +G F+ L DG ++G
Sbjct: 261 ADKISLSMKRL----KANPWQVLAEKYKINDIIEAPVMRISQFGIFLAL---DG--GISG 311
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
L+H+SE+S +++D+ + G+ V+ K+I D RI LS+K LEE P++
Sbjct: 312 LIHLSEISHTMVKDVAEYAKVGENVKAKIITFDPIAKRIGLSMKALEEAPVV 363
>gi|298368577|ref|ZP_06979895.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
gi|298282580|gb|EFI24067.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
Length = 561
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGTVVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WNGLTRRYPQGTRLFGK 284
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P ++ GLVH+S++SW + ++ +G+EV V+ ID +K RI+L IKQLE D
Sbjct: 385 -PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVDKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGTVVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + WN + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQDKQRVSLGMKQLGEDPWNGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357
>gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S
ribosomal protein S1 [Finegoldia magna ATCC 29328]
gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein
S1 [Finegoldia magna ATCC 29328]
gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
Length = 675
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
+WK + ++ E K+ GGL+ ++ F+P Q++ +H K+ K +
Sbjct: 369 NWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVT-THFVKDLSKYV---- 423
Query: 149 KGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----D 196
G + KV+ +E+ ++LV S E+ + +K + V + G+ D
Sbjct: 424 ----GETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGEKITGKVQRLTD 479
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAFI L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L
Sbjct: 480 FGAFIDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLG 533
Query: 257 IKQLEEDPL 265
+KQL++ P
Sbjct: 534 LKQLQQKPF 542
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GK+Q G + + G L +S + + P+ + G I V++AN
Sbjct: 472 GKVQRLTDFGAFIDLGGVDGLLHISDISWNR-IESPEDVLK------VGDEIETLVLKAN 524
Query: 165 EEMKKLVFSEK-------DA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
E ++ K DA V N + V ++ D+GAF+ L +G+ GLV
Sbjct: 525 REKNRISLGLKQLQQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKL--AEGI---EGLV 579
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
HVSE+S + + D LN GD V+VK+++I+ EK RI LS+K L P
Sbjct: 580 HVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIALSMKALLPKP 627
>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 366
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S +
Sbjct: 161 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISARR-----------VK 208
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + YGAFI +
Sbjct: 209 DDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPYGAFIDI 268
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 269 ------GGVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALEPE 322
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 323 PGDMLTDPQKVFSKAEE--MAAKYKQML 348
>gi|268596628|ref|ZP_06130795.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
gi|268682369|ref|ZP_06149231.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
gi|268550416|gb|EEZ45435.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
gi|268622653|gb|EEZ55053.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
Length = 561
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGFVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ GF+ +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGFVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|218548427|ref|YP_002382218.1| 30S ribosomal protein S1 [Escherichia fergusonii ATCC 35469]
gi|422806033|ref|ZP_16854465.1| ribosomal protein S1 [Escherichia fergusonii B253]
gi|424815830|ref|ZP_18240981.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
gi|218355968|emb|CAQ88584.1| 30S ribosomal subunit protein S1 [Escherichia fergusonii ATCC
35469]
gi|324113758|gb|EGC07733.1| ribosomal protein S1 [Escherichia fergusonii B253]
gi|325496850|gb|EGC94709.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
Length = 557
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|403253622|ref|ZP_10919923.1| ribosomal protein S1 [Thermotoga sp. EMP]
gi|418045501|ref|ZP_12683596.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
gi|351676386|gb|EHA59539.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
gi|402811156|gb|EJX25644.1| ribosomal protein S1 [Thermotoga sp. EMP]
Length = 543
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 10/192 (5%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G + G++ + G VR V G +P ++ ++ +KS+ E+
Sbjct: 262 WEKVEEKYPVGKVVSGEVTSIHPFGFFVRLEPGVEGLVPRSEVFWGNA----RKSLEEVV 317
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRF 205
G ++ V+VI ++E +KL S + A W R NV ++ G+ G F
Sbjct: 318 S--VGDLVKVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVTGIIKQGAF 375
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSIK+ +E+P
Sbjct: 376 VELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPW 435
Query: 266 LETLEKVIPQGL 277
L+++ P +
Sbjct: 436 ERALKELKPDSI 447
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 175 KDAVWNKYSSRVNVEDIFVGRDYG---AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 231
+D ++ S V DI G G A + + +G+ G + SE+S+D D
Sbjct: 172 QDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGV---RGFIPRSELSYDTRISPED 228
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
I+ G + K+I++D+ K + LS+K+L DP E +E+ P G
Sbjct: 229 IVKPGQNITAKIIELDKVKKNVILSLKKLMPDP-WEKVEEKYPVG 272
>gi|85058971|ref|YP_454673.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
gi|84779491|dbj|BAE74268.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
Length = 558
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVI-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAEIHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDSERERISLGVKQLVEDPF 441
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|251789939|ref|YP_003004660.1| 30S ribosomal protein S1 [Dickeya zeae Ech1591]
gi|247538560|gb|ACT07181.1| ribosomal protein S1 [Dickeya zeae Ech1591]
Length = 569
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+
Sbjct: 480 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAK 534
Query: 261 EE 262
+E
Sbjct: 535 DE 536
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKANP 365
>gi|87308954|ref|ZP_01091092.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
gi|87288297|gb|EAQ80193.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
Length = 536
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + + + G N GGL GF+P Q++P H + G +
Sbjct: 242 GILVDAVVDGVNKGGLECAVGQARGFIPASQIAPHHVTN---------MEDYLGQKLQCL 292
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF---VGR----------DYGAFIHLRFP 206
V +AN E + LV S + AV K E + VG+ D+GAF+ +
Sbjct: 293 VTEANPERRNLVLSAR-AVAEKAKEDSRKETMVTLQVGQMRDGTVTRLQDFGAFVDIGGV 351
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
DGL VHVS++SWD ++ D L+EG VRVKV KID E +I LSI+ E+P
Sbjct: 352 DGL------VHVSQISWDRVKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLENPWQ 405
Query: 267 ETLEK 271
+ E+
Sbjct: 406 KVAEE 410
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + G V + G + Q+S K P ++ E G + VK
Sbjct: 329 GQMRDGTVTRLQDFGAFVDIGGVDGLVHVSQIS-WDRVKHPSDALSE------GQAVRVK 381
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V + + E K+ S +D + W K + +V I G+ D+GAF+ +
Sbjct: 382 VTKIDPETGKIGLSIRDTLENPWQKVAEEFSVGAIINGKVTKIMDFGAFVEI-----APG 436
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSEVS + I +L G++V VKV+ ID+EK RI LSIK L P
Sbjct: 437 IEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNIDKEKRRIGLSIKALSPAP 489
>gi|429090211|ref|ZP_19152943.1| SSU ribosomal protein S1p [Cronobacter universalis NCTC 9529]
gi|426510014|emb|CCK18055.1| SSU ribosomal protein S1p [Cronobacter universalis NCTC 9529]
Length = 557
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|429095516|ref|ZP_19157622.1| SSU ribosomal protein S1p [Cronobacter dublinensis 582]
gi|426281856|emb|CCJ83735.1| SSU ribosomal protein S1p [Cronobacter dublinensis 582]
Length = 557
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVTGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8]
Length = 543
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 10/192 (5%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G + G++ + G VR V G +P ++ ++ +KS+ E+
Sbjct: 262 WEKVEEKYPVGKVVSGEVTSIHPFGFFVRLEPGVEGLVPRSEVFWGNA----RKSLEEVV 317
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRF 205
G ++ V+VI ++E +KL S + A W R NV ++ G+ G F
Sbjct: 318 S--VGDLVEVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVTGIIKQGAF 375
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSIK+ +E+P
Sbjct: 376 VELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPW 435
Query: 266 LETLEKVIPQGL 277
L+++ P +
Sbjct: 436 ERALKELKPDSI 447
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 175 KDAVWNKYSSRVNVEDIFVGRDYG---AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 231
+D ++ S V DI G G A + + +G+ G + SE+S+D D
Sbjct: 172 QDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGV---RGFIPRSELSYDTRISPED 228
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
I+ G + K+I++D+ K + LS+K+L DP E +E+ P G
Sbjct: 229 IVKPGQNITAKIIELDKVKKNVILSLKKLMPDP-WEKVEEKYPVG 272
>gi|377576312|ref|ZP_09805296.1| 30S ribosomal protein S1 [Escherichia hermannii NBRC 105704]
gi|377542344|dbj|GAB50461.1| 30S ribosomal protein S1 [Escherichia hermannii NBRC 105704]
Length = 557
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|429109723|ref|ZP_19171493.1| SSU ribosomal protein S1p [Cronobacter malonaticus 507]
gi|426310880|emb|CCJ97606.1| SSU ribosomal protein S1p [Cronobacter malonaticus 507]
Length = 593
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|406943737|gb|EKD75667.1| hypothetical protein ACD_44C00064G0001 [uncultured bacterium]
Length = 558
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 41/216 (18%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R+ A + A+A+++S I G + G GG V ++ FLP P
Sbjct: 85 SREKAKRNEAWTQLAKAHEQSEIIM-GLVSGKVKGGFTVEIGTIRAFLPGSLVDVRPVRD 143
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-RVN-VED 190
SH + G I +KVI+ + + +V S + + ++ S+ R+ + +
Sbjct: 144 TSH---------------IEGKEIELKVIKLDPKRNNVVVSRRAVIESENSAERIALLGN 188
Query: 191 IFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR 240
I G+ DYGAF+ L DGL H+T ++SW ++ +I+N GDE+R
Sbjct: 189 IQEGQEVMGIVKNLTDYGAFVDLGGVDGLLHIT------DMSWKRVKHPNEIVNVGDEIR 242
Query: 241 VKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
VKV+K DRE+SR++L +KQL +DP + +++ P+G
Sbjct: 243 VKVLKFDRERSRVSLGLKQLGDDPWTDLIKRH-PKG 277
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + V G + +M ++ P K +H G V V++
Sbjct: 282 GKVTNITDYGCFVEIENGVEGLVHVSEMDWTNKNINPNKVVH------LGQETEVMVLEI 335
Query: 164 NEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K D W +S D G+ D+G FI L DG + GL
Sbjct: 336 DEERRRISLGLKQCADNPWEAFSKTHAKGDKIAGKIKSITDFGIFIGL---DG--SIDGL 390
Query: 216 VHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW D +D +GDE+ V+ +D E+ RI+L IKQL +D L
Sbjct: 391 VHLSDISWTDTGEDAVKKYKKGDELEALVLAVDPERERISLGIKQLADDAL 441
>gi|317491458|ref|ZP_07949894.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365837822|ref|ZP_09379179.1| ribosomal protein S1 [Hafnia alvei ATCC 51873]
gi|316921005|gb|EFV42328.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364561013|gb|EHM38927.1| ribosomal protein S1 [Hafnia alvei ATCC 51873]
Length = 559
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISMNKKGVIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
Length = 518
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V F+L GF+P ++ P + G V++++ ++ ++LV
Sbjct: 134 GGLMVNCFNLEGFIPISHLAEEGRGVNPGR--------FEGEEFQVRLLEMDKRKRRLVL 185
Query: 173 SEKD-------AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + A K+ S VNV D+ G +G F+++ L GLVHVSE
Sbjct: 186 SRRSLLDEDLSAKREKFYSEVNVGDVLDGTVSSVTTFGLFVNV------GPLDGLVHVSE 239
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
VSW R+ +GD V+VKVI ID+E ++I+LSI+Q + +P +E+
Sbjct: 240 VSWQRSSKSRETYKKGDAVKVKVIGIDKENNKISLSIRQAQGNPWDTVMER 290
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + GL V L G + ++S S K E K G + VK
Sbjct: 209 GDVLDGTVSSVTTFGLFVNVGPLDGLVHVSEVSWQRSSKS-----RETYK--KGDAVKVK 261
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
VI ++E K+ S + A W+ R + G D+GAF+ +
Sbjct: 262 VIGIDKENNKISLSIRQAQGNPWDTVMERWQKDQQTKGVVTNVTDFGAFVEVE-----PG 316
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+ ++SW I+ R++L++G EV V++ID EK R++L KQL DP
Sbjct: 317 IEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYKQL-HDP 368
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD--AVWNKYSSR-VNVEDIFVG 194
K P++ +H+ G + V++ + E K++ K W R +DI V
Sbjct: 332 KHPREVLHK------GQEVETIVLEIDPEKKRMSLGYKQLHDPWKGIEERYTKGQDITVK 385
Query: 195 ----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAF+ + + GL+H+S++S ++ D+L EG EV +V++++ +
Sbjct: 386 VVRLADFGAFVEIE-----KGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNPAE 440
Query: 251 SRITLSIKQLE 261
RI LSI +E
Sbjct: 441 RRIRLSISAIE 451
>gi|271500810|ref|YP_003333835.1| 30S ribosomal protein S1 [Dickeya dadantii Ech586]
gi|270344365|gb|ACZ77130.1| ribosomal protein S1 [Dickeya dadantii Ech586]
Length = 569
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+
Sbjct: 480 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAK 534
Query: 261 EE 262
+E
Sbjct: 535 DE 536
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKANP 365
>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
Length = 412
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLL-VRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R + I +GK+ G N GG++ + L GF+PF Q+S + A
Sbjct: 175 WERCRQLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKST-----------A 223
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
+ L + +K + +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 224 EELLEKELPLKFVDVDEEQSRLVLSNRKAMADS-QAQLGIGSVVIGTVQSLKPYGAFIDI 282
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE
Sbjct: 283 ------GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 336
Query: 264 P 264
P
Sbjct: 337 P 337
>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
Length = 217
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 23/161 (14%)
Query: 109 GFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK 168
G N GG++ L GF+PF Q+S + +E L + +K ++ +EE
Sbjct: 2 GGNKGGVVALVEGLKGFVPFSQVSSKSTAEE-----------LLDKELPLKFVEVDEEQG 50
Query: 169 KLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+LV S + A+ + + ++ + + +G + YGAFI + + GL+HVS++S
Sbjct: 51 RLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI------GGINGLLHVSQISH 103
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 104 DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 144
>gi|387889807|ref|YP_006320105.1| 30S ribosomal protein [Escherichia blattae DSM 4481]
gi|414592526|ref|ZP_11442176.1| 30S ribosomal protein S1 [Escherichia blattae NBRC 105725]
gi|386924640|gb|AFJ47594.1| 30S ribosomal protein [Escherichia blattae DSM 4481]
gi|403196595|dbj|GAB79828.1| 30S ribosomal protein S1 [Escherichia blattae NBRC 105725]
Length = 556
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|294636910|ref|ZP_06715237.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
gi|451967155|ref|ZP_21920401.1| 30S ribosomal protein S1 [Edwardsiella tarda NBRC 105688]
gi|291089863|gb|EFE22424.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
gi|451314087|dbj|GAC65763.1| 30S ribosomal protein S1 [Edwardsiella tarda NBRC 105688]
Length = 556
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
Length = 419
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 23/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W R E GKI N GG ++ SL GFLPF QM+ S E
Sbjct: 208 WTRVRQMAELDVTLSGKILSHNRGGFIIEVDSLQGFLPFSQMATSVDKDE---------- 257
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ G +I VK ++ + E ++LV S + AV + + V D+ VG + YGAFI+
Sbjct: 258 -MIGKVIPVKFLEVDMENQRLVMSNRRAVASSFKKNYKVGDVVVGTVTALKPYGAFIN-- 314
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L + GL+H+S++S D + ++D+++ G +++V ++ D + R++LS K+LE
Sbjct: 315 ----LGGVNGLLHISQISHDHVTSVKDVMDVGQKLKVMIMSRD-QNGRVSLSTKRLE 366
>gi|429114951|ref|ZP_19175869.1| SSU ribosomal protein S1p [Cronobacter sakazakii 701]
gi|426318080|emb|CCK01982.1| SSU ribosomal protein S1p [Cronobacter sakazakii 701]
Length = 556
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|156934599|ref|YP_001438515.1| 30S ribosomal protein S1 [Cronobacter sakazakii ATCC BAA-894]
gi|389841530|ref|YP_006343614.1| 30S ribosomal protein S1 [Cronobacter sakazakii ES15]
gi|417791613|ref|ZP_12439053.1| 30S ribosomal protein S1 [Cronobacter sakazakii E899]
gi|424799022|ref|ZP_18224564.1| SSU ribosomal protein S1p [Cronobacter sakazakii 696]
gi|429108180|ref|ZP_19170049.1| SSU ribosomal protein S1p [Cronobacter malonaticus 681]
gi|429121370|ref|ZP_19182006.1| SSU ribosomal protein S1p [Cronobacter sakazakii 680]
gi|449308786|ref|YP_007441142.1| 30S ribosomal protein S1 [Cronobacter sakazakii SP291]
gi|156532853|gb|ABU77679.1| hypothetical protein ESA_02433 [Cronobacter sakazakii ATCC BAA-894]
gi|333954292|gb|EGL72154.1| 30S ribosomal protein S1 [Cronobacter sakazakii E899]
gi|387852006|gb|AFK00104.1| 30S ribosomal protein S1 [Cronobacter sakazakii ES15]
gi|423234743|emb|CCK06434.1| SSU ribosomal protein S1p [Cronobacter sakazakii 696]
gi|426294903|emb|CCJ96162.1| SSU ribosomal protein S1p [Cronobacter malonaticus 681]
gi|426324214|emb|CCK12743.1| SSU ribosomal protein S1p [Cronobacter sakazakii 680]
gi|449098819|gb|AGE86853.1| 30S ribosomal protein S1 [Cronobacter sakazakii SP291]
Length = 557
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|420369142|ref|ZP_14869867.1| ribosomal protein S1 [Shigella flexneri 1235-66]
gi|391321468|gb|EIQ78191.1| ribosomal protein S1 [Shigella flexneri 1235-66]
Length = 557
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|429081906|ref|ZP_19145001.1| SSU ribosomal protein S1p [Cronobacter condimenti 1330]
gi|426549472|emb|CCJ71042.1| SSU ribosomal protein S1p [Cronobacter condimenti 1330]
Length = 557
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|218768323|ref|YP_002342835.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|433479880|ref|ZP_20437170.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|433520080|ref|ZP_20476800.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|433541158|ref|ZP_20497610.1| ribosomal protein S1 [Neisseria meningitidis 63006]
gi|121052331|emb|CAM08662.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|432216219|gb|ELK72101.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|432254802|gb|ELL10136.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|432277171|gb|ELL32220.1| ribosomal protein S1 [Neisseria meningitidis 63006]
Length = 561
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R + G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQDTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|237730874|ref|ZP_04561355.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
gi|283833798|ref|ZP_06353539.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
gi|365105658|ref|ZP_09334807.1| 30S ribosomal protein S1 [Citrobacter freundii 4_7_47CFAA]
gi|395227593|ref|ZP_10405919.1| 30S ribosomal subunit protein S1 [Citrobacter sp. A1]
gi|421844374|ref|ZP_16277532.1| 30S ribosomal protein S1 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|424728703|ref|ZP_18157308.1| 30s ribosomal protein s1 [Citrobacter sp. L17]
gi|226906413|gb|EEH92331.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
gi|291070463|gb|EFE08572.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
gi|363643172|gb|EHL82496.1| 30S ribosomal protein S1 [Citrobacter freundii 4_7_47CFAA]
gi|394718921|gb|EJF24542.1| 30S ribosomal subunit protein S1 [Citrobacter sp. A1]
gi|411774529|gb|EKS58019.1| 30S ribosomal protein S1 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|422896574|gb|EKU36356.1| 30s ribosomal protein s1 [Citrobacter sp. L17]
gi|455642411|gb|EMF21577.1| 30S ribosomal protein S1 [Citrobacter freundii GTC 09479]
Length = 557
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|59801032|ref|YP_207744.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
gi|240013932|ref|ZP_04720845.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI18]
gi|240016374|ref|ZP_04722914.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA6140]
gi|268594992|ref|ZP_06129159.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
gi|268601567|ref|ZP_06135734.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
gi|268684527|ref|ZP_06151389.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
gi|268686837|ref|ZP_06153699.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
gi|59717927|gb|AAW89332.1| putative 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
gi|268548381|gb|EEZ43799.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
gi|268585698|gb|EEZ50374.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
gi|268624811|gb|EEZ57211.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
gi|268627121|gb|EEZ59521.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
Length = 561
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|300716082|ref|YP_003740885.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
gi|299061918|emb|CAX59034.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
Length = 557
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
PV +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPVEQFKNAAGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + ++H L G + KVI
Sbjct: 108 VT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTLH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW+ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEE 404
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVNGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASVDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVR 520
>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|335049631|ref|ZP_08542618.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|333762366|gb|EGL39864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
Length = 635
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 27/199 (13%)
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
+ ADW+ R E+ + E + N GL+V SL GF+P Q H K
Sbjct: 371 QKEADWEEVRQAYENDQLIECVGKETNKAGLVVSIKSLRGFIPLSQ-GDVHFVKS----- 424
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-----WNKYSSRVNVED-------IF 192
L G VK+I +E +LV S K + + + ++E+ +
Sbjct: 425 ---LDNLVGQTFQVKIIDLDEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVV 481
Query: 193 VGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
YGAF+ L + GL+H+S++SW I + D+L+ GD V V V + DRE++R
Sbjct: 482 KIMPYGAFVDLG------GVEGLLHISDISWKRIGAVEDVLSVGDTVHVLVQQFDRERNR 535
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+LS+K L+++P + +EK
Sbjct: 536 ISLSMKALQKNPWIAAIEK 554
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
+ GL+H+S ++ ++D++ GD+++VK+IKID +K ++ LS+
Sbjct: 581 IQGLLHISALTEQRGAAVKDLVAIGDKMQVKIIKIDPDKHKVALSV 626
>gi|291043584|ref|ZP_06569300.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
gi|291012047|gb|EFE04036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
Length = 570
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 68 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 127
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 128 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 184 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 236
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 237 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 276
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 282 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 334
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 393
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 394 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 449
Query: 264 PL 265
P
Sbjct: 450 PF 451
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 200 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 252
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 253 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 307
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 308 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366
>gi|240121501|ref|ZP_04734463.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID24-1]
gi|385335904|ref|YP_005889851.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164447|gb|ADV07988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
Length = 559
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 265
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 271 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 323
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 382
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 383 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 438
Query: 264 PL 265
P
Sbjct: 439 PF 440
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355
>gi|238022458|ref|ZP_04602884.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
gi|237867072|gb|EEP68114.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
Length = 557
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 28/238 (11%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGF 110
P+G+ T+ + + + + +++ +ADW E G I G I G
Sbjct: 55 PLGELEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMEDGEILSGVINGK 114
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
GGL V S+ FLP + P K + G + KVI+ + + +
Sbjct: 115 VKGGLTVMVNSIRAFLPGSLLDVR-----PIKDTSQ----FEGKEVEFKVIKLDRKRNNV 165
Query: 171 VFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHV 218
V S E+ A+ V+ I DYGAF+ L DGL +H+
Sbjct: 166 VVSRRAVLEATLGEERKALMETLQEGTIVKGIVKNITDYGAFVDLGGIDGL------LHI 219
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
++++W ++ ++L G EV KV++ D++K R++L +KQL EDP E L + PQG
Sbjct: 220 TDLAWRRVKHPSEVLEVGKEVEAKVLRFDQDKQRVSLGLKQLGEDP-WEGLARRYPQG 276
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEI 147
W+ AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 266 WEGLARRYPQGSRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ-- 322
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V ++ +E+ +++ K W ++ + N D G D+G
Sbjct: 323 ----LGDEVEVMILDIDEDKRRISLGMKQCQANPWLEFEANYNKGDKLKGTVKSITDFGV 378
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+ L P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IK
Sbjct: 379 FVGL--PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVETVVLAIDVEKERISLGIK 433
Query: 259 QLEEDPL 265
QLE DP
Sbjct: 434 QLEGDPF 440
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
KA + G I +G ++ G V + G L ++ K P + +
Sbjct: 182 KALMETLQEGTIVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE----- 235
Query: 151 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
G + KV++ +++ +++ K + W + R G+ DYGAF+
Sbjct: 236 -VGKEVEAKVLRFDQDKQRVSLGLKQLGEDPWEGLARRYPQGSRLFGKVSNLTDYGAFVE 294
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + GLVHVSE+ W +++ ++ GDEV V ++ ID +K RI+L +KQ
Sbjct: 295 IE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILDIDEDKRRISLGMKQC 348
Query: 261 EEDPLLE 267
+ +P LE
Sbjct: 349 QANPWLE 355
>gi|254493933|ref|ZP_05107104.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
gi|268599220|ref|ZP_06133387.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
gi|268603906|ref|ZP_06138073.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
gi|226512973|gb|EEH62318.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
gi|268583351|gb|EEZ48027.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
gi|268588037|gb|EEZ52713.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
Length = 561
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|293398896|ref|ZP_06643061.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
gi|291610310|gb|EFF39420.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
Length = 570
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 68 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 127
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 128 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 184 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 236
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 237 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 276
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 282 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 334
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 393
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 394 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 449
Query: 264 PL 265
P
Sbjct: 450 PF 451
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 200 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 252
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 253 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 307
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 308 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366
>gi|269926456|ref|YP_003323079.1| RNA binding S1 domain-containing protein [Thermobaculum terrenum
ATCC BAA-798]
gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
Length = 431
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 111/218 (50%), Gaps = 24/218 (11%)
Query: 70 ILDDSSDANNR----QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGF 125
+L+ S D R ++R+ W+ + E+G I + K+ G+N GGLLV L GF
Sbjct: 132 VLNASEDNEGRIVLSVDRARAERLWRELQQKLETGEIVDCKVVGYNKGGLLVDLGGLRGF 191
Query: 126 LPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
+P Q+S S + + E+A L G + KVI+ N + +L+ SE+ A + +
Sbjct: 192 IPSSQISFLVSSNDADRQ-SELAN-LVGRTLQAKVIEVNRKRNRLILSERIATQERKETS 249
Query: 186 VN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+E++ G+ D+GAF+ + DGL HL SE+SW I ++L
Sbjct: 250 KERLIEELREGQIVKGRVTSLADFGAFVDIGGADGLIHL------SEISWGRINHPSEVL 303
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
GDEV V V+ IDRE +I LS+K+ + +P +E+
Sbjct: 304 KPGDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMER 341
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 20/118 (16%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V V+ + E KK+ S K W R +V I G +G F+ R
Sbjct: 306 GDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVTQIAPFGVFV--R 363
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG+ GLVH+SE+ +Q GD++R++VIK+D ++ RI LS++QL+E
Sbjct: 364 LEDGI---EGLVHMSELGDTKVQ-------VGDKLRLRVIKMDTQRRRIGLSVRQLDE 411
>gi|342218637|ref|ZP_08711247.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
gi|341589507|gb|EGS32782.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
Length = 636
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
+ ADW+ R ++ + E + N GL+V +L GF+P Q H K +
Sbjct: 371 QKEADWEEVRQAYDANQVVECVGKETNKAGLVVSIKTLRGFIPLSQ-GDIHFVKTLEH-- 427
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-----------WNKYSSRVNVEDIFV 193
L G ++I +E +LV S K + + V+ V
Sbjct: 428 ------LVGKTFEAQIIDLDEHKNRLVLSRKAVLEAEREEKREKALATIAENTEVDGTVV 481
Query: 194 G-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
YGAF+ L + GL+H+S++SW I + D+L+ GD V V + DRE++R
Sbjct: 482 KIMPYGAFVDLGG------VEGLLHISDISWKRINTVEDVLSVGDTVHALVQQFDRERNR 535
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+LSIK L+++P +E +EK
Sbjct: 536 ISLSIKALQKNPWIEAIEK 554
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+ GL+H+SE++ ++DI+ GD ++VK+IKID +K +++LS
Sbjct: 581 IQGLLHISELTPQRGVAVKDIVQIGDTMKVKIIKIDPDKHKVSLS 625
>gi|374313214|ref|YP_005059644.1| 30S ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
gi|358755224|gb|AEU38614.1| ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
Length = 654
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 28/171 (16%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + FLP Q+ P +++ G G+ I V+VI+ N++ +V
Sbjct: 202 GGLTVDI-GIKAFLPGSQVEVR-----PVRNL----DGYIGTEIEVRVIKLNKKRGNVVI 251
Query: 173 SEKDAVWNKYSSRVNVE-------DIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S K+ + +++ V +F G DYGAF+ + DGL H+T +
Sbjct: 252 SRKELLEEDQNAKKAVTLSTLEEGSVFTGVVKNLTDYGAFVDMGGLDGLLHIT------D 305
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+SW + RD++N GDE++VKV+K D+EK R++L KQL DP L+ E+
Sbjct: 306 MSWGRLTHPRDLVNVGDEIQVKVLKFDKEKQRVSLGFKQLTPDPWLDATER 356
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G ++ G ++ G V L G L MS P+ ++ G I
Sbjct: 273 EEGSVFTGVVKNLTDYGAFVDMGGLDGLLHITDMSWGR-LTHPRDLVN------VGDEIQ 325
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ ++E +++ K W + R + GR DYGAF+ L
Sbjct: 326 VKVLKFDKEKQRVSLGFKQLTPDPWLDATERYPIGAQVRGRVLSVTDYGAFVELE----- 380
Query: 210 YHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVHVSE++W ++ ++ GD V ++ ++ RI+L +KQL+++P E
Sbjct: 381 QGIEGLVHVSEMTWSKRMKHPSKMVKPGDIVDTIILSVNPNDRRISLGMKQLQDNP-WEA 439
Query: 269 LEKVIPQG 276
LE P G
Sbjct: 440 LEDKYPIG 447
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+A G + EG+++ G + + G + +S + K P + + +
Sbjct: 437 WEALEDKYPIGAVIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKK-- 494
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAF 200
G + V+ E ++L K VW+ + ++ V D+ G+ +GAF
Sbjct: 495 ----GEKVKAIVLGVEPENRRLSLGVKQLQPDVWDTFFAQHRVGDVIKGKTLRTAQFGAF 550
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + + GL HVSE + + I L GDE K++K+++E+ ++ LSIK +
Sbjct: 551 VEI-----AEGVEGLCHVSEAVDETGKQI--TLEVGDEHEFKIVKMNQEEKKVGLSIKAV 603
Query: 261 EED 263
E+
Sbjct: 604 GEE 606
>gi|194098874|ref|YP_002001938.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
gi|193934164|gb|ACF29988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
Length = 584
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 82 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 141
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 142 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 197
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 198 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 250
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D+EK R++L +KQL EDP
Sbjct: 251 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 290
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 296 RRYPQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 348
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 349 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 407
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 408 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 463
Query: 264 PL 265
P
Sbjct: 464 PF 465
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 214 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 266
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 267 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIE----- 321
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 322 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 380
>gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
Length = 507
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM-----SPSHSC 137
++ + W+ A ++G + + K+ FN GGL+V + GF+P Q+ +
Sbjct: 138 RANTERQWRIAEEQFKNGELLKAKVIDFNKGGLIVDVNGIRGFVPISQILNLKREEVAAG 197
Query: 138 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR 195
E Q++ ++ + + + +K+I+ N +L+ SE+ AV W + +E++ G
Sbjct: 198 GENQETAAKL-QAMKDKELQLKIIEINRARNRLILSERMAVQEWRQRRREELLEELKPGE 256
Query: 196 ----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
++GAF+ L DGL VH+S+++W + ++L+ G EV V+V+
Sbjct: 257 VRKGVVSNLANFGAFVDLGGADGL------VHISQLAWSRVNHPSEVLHVGQEVEVQVLS 310
Query: 246 IDREKSRITLSIKQLEEDPLLETLEKVIP 274
+D+E+ +I LSIK+ E DP ++ P
Sbjct: 311 VDKERKKIALSIKRAEVDPWTTVEQRYTP 339
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + G V G + Q++ S P + +H G + V+
Sbjct: 255 GEVRKGVVSNLANFGAFVDLGGADGLVHISQLAWSR-VNHPSEVLH------VGQEVEVQ 307
Query: 160 VIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ ++E KK+ S K A W R + G +GAF R DG+
Sbjct: 308 VLSVDKERKKIALSIKRAEVDPWTTVEQRYTPGQLVNGTVTKIAPFGAFA--RIEDGI-- 363
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
GL+H SE++ D + IL EG ++++++++ID E+ R+ LS++Q++E
Sbjct: 364 -EGLIHHSELAPGT--DPKSILQEGAQLQLRILRIDPERRRLGLSLRQVDE 411
>gi|270261192|ref|ZP_06189465.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
gi|333926540|ref|YP_004500119.1| 30S ribosomal protein S1 [Serratia sp. AS12]
gi|333931493|ref|YP_004505071.1| 30S ribosomal protein S1 [Serratia plymuthica AS9]
gi|386328363|ref|YP_006024533.1| 30S ribosomal protein S1 [Serratia sp. AS13]
gi|386825083|ref|ZP_10112210.1| 30S ribosomal protein S1 [Serratia plymuthica PRI-2C]
gi|421782733|ref|ZP_16219187.1| ribosomal protein S1 [Serratia plymuthica A30]
gi|270044676|gb|EFA17767.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
gi|333473100|gb|AEF44810.1| ribosomal protein S1 [Serratia plymuthica AS9]
gi|333490600|gb|AEF49762.1| ribosomal protein S1 [Serratia sp. AS12]
gi|333960696|gb|AEG27469.1| ribosomal protein S1 [Serratia sp. AS13]
gi|386377940|gb|EIJ18750.1| 30S ribosomal protein S1 [Serratia plymuthica PRI-2C]
gi|407755142|gb|EKF65271.1| ribosomal protein S1 [Serratia plymuthica A30]
Length = 557
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSMNKKGTIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL-----AGGVEGYLRASEASRDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|421557404|ref|ZP_16003309.1| ribosomal protein S1 [Neisseria meningitidis 80179]
gi|433469498|ref|ZP_20426919.1| ribosomal protein S1 [Neisseria meningitidis 98080]
gi|402335042|gb|EJU70317.1| ribosomal protein S1 [Neisseria meningitidis 80179]
gi|432203768|gb|ELK59818.1| ribosomal protein S1 [Neisseria meningitidis 98080]
Length = 561
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVK-VIQA- 163
GGL V S+ FLP P SH KE + + ++ K ++S + V++A
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEAT 178
Query: 164 -NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE K L+ + ++ + + V++I DYGAF+ L DGL +H+++++
Sbjct: 179 LGEERKALLENLQEG----FVIKGIVKNI---TDYGAFVDLGGIDGL------LHITDLA 225
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 226 WRRVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ GF+ +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGFVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
>gi|269792637|ref|YP_003317541.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100272|gb|ACZ19259.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 504
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V L GF+P ++ P L G VK+++ + ++LV
Sbjct: 136 GGLIVDCCGLEGFIPISHLAEEGRGINPAN--------LVGKTFPVKLVEKDRRKRRLVL 187
Query: 173 S-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S E ++ ++ + V+ DI G +G F++L + GLVH++E
Sbjct: 188 SRRSILDEEMASLREEFYANVHEGDILEGEVSSITSFGVFVNL------GAMEGLVHITE 241
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+SW +D++ +GD+V+VKVI IDRE +R++LS+KQ +EDP +
Sbjct: 242 LSWQRGAKAKDLVQKGDKVKVKVIGIDRENNRVSLSLKQAQEDPWV 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT--GSIIS 157
G I EG++ G+ V ++ G + ++S K AK L G +
Sbjct: 211 GDILEGEVSSITSFGVFVNLGAMEGLVHITELSWQRGAK---------AKDLVQKGDKVK 261
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VKVI + E ++ S K A W +SR V G D+GAF+ + P
Sbjct: 262 VKVIGIDRENNRVSLSLKQAQEDPWVGVTSRWTVGQRTKGVVTNLADFGAFVEIE-PG-- 318
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ GL+H+ ++SW ++ +++L +G EV V ++++D ++ RI L +KQL DP
Sbjct: 319 --VEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQL-NDPWANVS 375
Query: 270 EK 271
EK
Sbjct: 376 EK 377
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + DG+ GL+H+S++S ++ D+L EG EV+ K+++++ + RI L
Sbjct: 393 DFGAFVEIE--DGV---EGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRIRL 447
Query: 256 SIKQLEE 262
S++ LEE
Sbjct: 448 SLRALEE 454
>gi|157369952|ref|YP_001477941.1| 30S ribosomal protein S1 [Serratia proteamaculans 568]
gi|157321716|gb|ABV40813.1| ribosomal protein S1 [Serratia proteamaculans 568]
Length = 559
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSMNKKGTIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL-----AGGVEGYLRASEASRDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|416203979|ref|ZP_11620169.1| ribosomal protein S1, partial [Neisseria meningitidis 961-5945]
gi|325142504|gb|EGC64906.1| ribosomal protein S1 [Neisseria meningitidis 961-5945]
Length = 416
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPS 134
+ +++ +ADW A E+G I G I G GGL V S+ FLP P S
Sbjct: 8 REKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTS 67
Query: 135 H-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFV 193
H KE + + ++ K ++S + + ++ + E+ A+ ++ I
Sbjct: 68 HFEGKEIEFKVIKLDKKRNNVVVSRRAV-----LEATLGEERKALLENLQEGSVIKGIVK 122
Query: 194 G-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ L DGL H+T L +W ++ ++L G EV KV+K D+EK R
Sbjct: 123 NITDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLEVGQEVEAKVLKFDQEKQR 176
Query: 253 ITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++L +KQL EDP L + PQG + K
Sbjct: 177 VSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 205
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 224 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 277
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 278 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 332
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 333 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 112 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 164
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 165 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 219
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 220 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 278
>gi|428201607|ref|YP_007080196.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427979039|gb|AFY76639.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 326
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 110 WERVRQLQAEDATVRANVFATNRGGALVRIEGLRGFIPGSHISA-----------REAKE 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + V + G + YGAFI +
Sbjct: 159 DLVGQELPLKFLEVDEERNRLVLSHRRALVERKMHGLEVGQVVTGTVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D + RI+LS KQLE +P
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDANRGRISLSTKQLEPEP 272
>gi|378579117|ref|ZP_09827786.1| 30S ribosomal subunit protein S1 [Pantoea stewartii subsp.
stewartii DC283]
gi|377818161|gb|EHU01248.1| 30S ribosomal subunit protein S1 [Pantoea stewartii subsp.
stewartii DC283]
Length = 557
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 16/116 (13%)
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 212 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 23/199 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASMDRIEDATLVLNVGDDVEAKFTGVDRKNRLVSLSVRAK 522
Query: 259 -QLEEDPLLETLEKVIPQG 276
Q +E + T+ +G
Sbjct: 523 DQADEKEAINTVNTKQEEG 541
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|333375352|ref|ZP_08467164.1| 30S ribosomal protein S1 [Kingella kingae ATCC 23330]
gi|332970684|gb|EGK09665.1| 30S ribosomal protein S1 [Kingella kingae ATCC 23330]
Length = 557
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + ++R +ADW A E G I G I G
Sbjct: 57 GELEVKVGDFVTVTIESVENGFGETKLSREKARRAADWIALEEAMEDGEILSGVINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ + ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLLDVRPIKDTSHFEGKEIEFKVIKLDRKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEATLGEERKALMENLQEGTIVKGIVKNLTDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
++ ++L G EV KV+K D++K R++L +KQL EDP + L + PQ
Sbjct: 226 RVKHPSEVLEMGQEVEAKVLKFDQDKQRVSLGLKQLGEDP-WDGLARRYPQ 275
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y +S ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 ARRYPQSTRLF-GKVSNLTEYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V ++ +E+ +++ K W + + + D G D+G FI L
Sbjct: 323 LGDEVEVMILDIDEDKRRISLGMKQCQSNPWKDFEANYSKGDKIKGAVKSITDFGVFIGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 383 --PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEG 437
Query: 263 DPL 265
DP
Sbjct: 438 DPF 440
>gi|421907037|ref|ZP_16336925.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha704]
gi|393292001|emb|CCI72894.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha704]
Length = 589
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 87 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 146
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 147 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 202
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 203 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 255
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 256 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 312
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 301 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 353
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 354 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 412
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 413 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 468
Query: 264 PL 265
P
Sbjct: 469 PF 470
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 219 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 271
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + W+ + R G+ DYGAF+ +
Sbjct: 272 AKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 326
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 327 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRISLGMKQCQANPWEE 385
>gi|312880067|ref|ZP_07739867.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
gi|310783358|gb|EFQ23756.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
Length = 502
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 106 KIQGFNG--GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
++QG GGL+V + GF+P ++ P + L VK+I+
Sbjct: 127 QVQGIRKVKGGLIVDCCGIEGFIPISHLAEEGRGINPSR--------LLEQAFPVKMIEK 178
Query: 164 NEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
+ ++LV S + + + SS V+ D+ G +G F++L
Sbjct: 179 DRRKRRLVLSRRSMLEEELSSLREDFYANVHEGDVLEGDVSSITSFGVFVNL------GA 232
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
L GLVH+SE+SW RD++N+GD V+VKVI IDRE +RI+LSIKQ +DP E+
Sbjct: 233 LEGLVHISELSWQRNAKARDLVNKGDHVKVKVIGIDRETNRISLSIKQTLDDPWFTVHER 292
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT--GSII 156
G + EG + G+ V +L G + ++S + K A+ L G +
Sbjct: 210 EGDVLEGDVSSITSFGVFVNLGALEGLVHISELSWQRNAK---------ARDLVNKGDHV 260
Query: 157 SVKVIQANEEMKKLVFSEK---DAVW----NKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
VKVI + E ++ S K D W ++ E D+GAF+ +
Sbjct: 261 KVKVIGIDRETNRISLSIKQTLDDPWFTVHERWQKDARTEGTVTNLTDFGAFVEIE---- 316
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVH+ ++SW I+ R++L +G ++ V V+ +D ++ RI+L KQL DP +
Sbjct: 317 -PGVEGLVHIGDLSWSRIKHPREVLKKGQKIDVVVLDVDTDRKRISLGFKQL-HDPWRDV 374
Query: 269 LEK 271
E+
Sbjct: 375 EER 377
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L + GL+H+S++S + +D+L EG EV ++++++ + RI L
Sbjct: 393 DFGAFVELE-----EGVEGLIHISQLSRQRVDKPQDVLQEGQEVEARILEVNPAERRIRL 447
Query: 256 SIKQLEEDPLLE 267
S++ E+P E
Sbjct: 448 SLRPQSEEPAEE 459
>gi|291616906|ref|YP_003519648.1| RpsA [Pantoea ananatis LMG 20103]
gi|378767885|ref|YP_005196355.1| 30S ribosomal protein S1 [Pantoea ananatis LMG 5342]
gi|386015271|ref|YP_005933552.1| 30S ribosomal protein S1 [Pantoea ananatis AJ13355]
gi|386079987|ref|YP_005993512.1| 30S ribosomal protein S1 [Pantoea ananatis PA13]
gi|291151936|gb|ADD76520.1| RpsA [Pantoea ananatis LMG 20103]
gi|327393334|dbj|BAK10756.1| 30S ribosomal protein S1 RpsA [Pantoea ananatis AJ13355]
gi|354989168|gb|AER33292.1| 30S ribosomal protein S1 [Pantoea ananatis PA13]
gi|365187368|emb|CCF10318.1| 30S ribosomal protein S1 [Pantoea ananatis LMG 5342]
Length = 569
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWITLEKAYEEAETVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 480 VEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 534
Query: 259 -QLEEDPLLETL 269
Q +E + T+
Sbjct: 535 DQADEKEAINTV 546
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKSNP 365
>gi|33519839|ref|NP_878671.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
gi|33504184|emb|CAD83446.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
Length = 575
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 51 PVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGF----IY 103
P+ +F + ++ T ++ ILD D SR A + Y E +
Sbjct: 49 PINQFYNSHGELEVTVGDYIDVILDAVEDGFGETILSREKAKRHESWLYLEKAYQEVTTV 108
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G I G GG V + FLP + + + SI L G KVI+
Sbjct: 109 TGVIHGKVKGGFTVELNGIRAFLPGSLVD----IRPIKDSID-----LEGQTCDFKVIKL 159
Query: 164 NEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYGAFIHLRFPDGLYH 211
+ + +V S + A+ ++S+ + E I + DYGAFI L DGL H
Sbjct: 160 DHKRNNVVVSRRAAIEFEHSAERDQLLHKLHEGIIIKGVVKNLTDYGAFIDLGGIDGLLH 219
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+T +++W ++ DI++ GDE+ VKV+K DRE++R++L +KQLE+DP +
Sbjct: 220 IT------DIAWKRVKHPSDIISIGDEISVKVLKFDRERTRVSLGLKQLEDDPWI 268
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
R YKE I GK+ G + V G + +M ++ P K +
Sbjct: 271 VRNYKEGDKIT-GKVTNLTDYGCFIEIAGGVEGLVHISEMDWTNKNIHPSKVVE------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G I V V+ +E+ +++ K W ++S D GR D+G FI L
Sbjct: 324 VGECIEVMVLDIDEDRRRISLGLKQCKVNPWQRFSQIYARGDRVTGRIKSITDFGIFIGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDI--LNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG+ GLVH+S+++W + + I +GDEV V+++D E+ RI+LSIKQL
Sbjct: 384 --EDGI---DGLVHLSDIAWSVSNNNELISQYKKGDEVTAVVLQVDSERERISLSIKQLT 438
Query: 262 EDPL 265
EDPL
Sbjct: 439 EDPL 442
>gi|385851102|ref|YP_005897617.1| 30S ribosomal protein S1 [Neisseria meningitidis M04-240196]
gi|416213200|ref|ZP_11622184.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
gi|421538252|ref|ZP_15984429.1| ribosomal protein S1 [Neisseria meningitidis 93003]
gi|421542605|ref|ZP_15988712.1| ribosomal protein S1 [Neisseria meningitidis NM255]
gi|421550798|ref|ZP_15996799.1| ribosomal protein S1 [Neisseria meningitidis 69166]
gi|421563503|ref|ZP_16009322.1| ribosomal protein S1 [Neisseria meningitidis NM2795]
gi|433471515|ref|ZP_20428901.1| ribosomal protein S1 [Neisseria meningitidis 68094]
gi|433477748|ref|ZP_20435068.1| ribosomal protein S1 [Neisseria meningitidis 70012]
gi|433522015|ref|ZP_20478706.1| ribosomal protein S1 [Neisseria meningitidis 61103]
gi|433526208|ref|ZP_20482838.1| ribosomal protein S1 [Neisseria meningitidis 69096]
gi|433539083|ref|ZP_20495559.1| ribosomal protein S1 [Neisseria meningitidis 70030]
gi|325144558|gb|EGC66857.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
gi|325205925|gb|ADZ01378.1| ribosomal protein S1 [Neisseria meningitidis M04-240196]
gi|402317071|gb|EJU52610.1| ribosomal protein S1 [Neisseria meningitidis 93003]
gi|402317435|gb|EJU52973.1| ribosomal protein S1 [Neisseria meningitidis NM255]
gi|402329335|gb|EJU64696.1| ribosomal protein S1 [Neisseria meningitidis 69166]
gi|402341199|gb|EJU76386.1| ribosomal protein S1 [Neisseria meningitidis NM2795]
gi|432208367|gb|ELK64345.1| ribosomal protein S1 [Neisseria meningitidis 68094]
gi|432215413|gb|ELK71302.1| ribosomal protein S1 [Neisseria meningitidis 70012]
gi|432259832|gb|ELL15102.1| ribosomal protein S1 [Neisseria meningitidis 61103]
gi|432260972|gb|ELL16229.1| ribosomal protein S1 [Neisseria meningitidis 69096]
gi|432273445|gb|ELL28543.1| ribosomal protein S1 [Neisseria meningitidis 70030]
Length = 561
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRI 343
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 344 SLGMKQCQANPWEE 357
>gi|421544595|ref|ZP_15990671.1| ribosomal protein S1 [Neisseria meningitidis NM140]
gi|421546710|ref|ZP_15992755.1| ribosomal protein S1 [Neisseria meningitidis NM183]
gi|421548962|ref|ZP_15994986.1| ribosomal protein S1 [Neisseria meningitidis NM2781]
gi|421552913|ref|ZP_15998885.1| ribosomal protein S1 [Neisseria meningitidis NM576]
gi|421561372|ref|ZP_16007220.1| ribosomal protein S1 [Neisseria meningitidis NM2657]
gi|402322955|gb|EJU58405.1| ribosomal protein S1 [Neisseria meningitidis NM183]
gi|402323786|gb|EJU59228.1| ribosomal protein S1 [Neisseria meningitidis NM140]
gi|402325641|gb|EJU61050.1| ribosomal protein S1 [Neisseria meningitidis NM2781]
gi|402330092|gb|EJU65441.1| ribosomal protein S1 [Neisseria meningitidis NM576]
gi|402338835|gb|EJU74065.1| ribosomal protein S1 [Neisseria meningitidis NM2657]
Length = 561
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRI 343
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 344 SLGMKQCQANPWEE 357
>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 367
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPG-----SHISTRKPKEE---- 213
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 214 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 270
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 271 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 324
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 325 EPGDMLTDPQKVFEKAEE--MAARYKQML 351
>gi|416170622|ref|ZP_11608374.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
gi|416182807|ref|ZP_11612243.1| ribosomal protein S1 [Neisseria meningitidis M13399]
gi|325130335|gb|EGC53101.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
gi|325134457|gb|EGC57102.1| ribosomal protein S1 [Neisseria meningitidis M13399]
Length = 559
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 282
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 271 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 323
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 324 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 382
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 383 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 438
Query: 264 PL 265
P
Sbjct: 439 PF 440
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 288 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRI 341
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 342 SLGMKQCQANPWEE 355
>gi|395236087|ref|ZP_10414287.1| 30S ribosomal protein S1 [Enterobacter sp. Ag1]
gi|394729393|gb|EJF29389.1| 30S ribosomal protein S1 [Enterobacter sp. Ag1]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGTIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
>gi|345298588|ref|YP_004827946.1| 30S ribosomal protein S1 [Enterobacter asburiae LF7a]
gi|345092525|gb|AEN64161.1| ribosomal protein S1 [Enterobacter asburiae LF7a]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|343519795|ref|ZP_08756771.1| putative 30S ribosomal protein S1 [Haemophilus pittmaniae HK 85]
gi|343392351|gb|EGV04920.1| putative 30S ribosomal protein S1 [Haemophilus pittmaniae HK 85]
Length = 321
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFQNAQGELEVKVGDTVNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIA 271
Query: 270 E 270
E
Sbjct: 272 E 272
>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
Length = 367
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 213
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 214 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 270
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 271 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 324
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 325 EPGDMLTDPQKVFEKAEE--MAARYKQML 351
>gi|381401288|ref|ZP_09926197.1| 30S ribosomal protein S1 [Kingella kingae PYKK081]
gi|380833733|gb|EIC13592.1| 30S ribosomal protein S1 [Kingella kingae PYKK081]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + ++R +ADW A E G I G I G
Sbjct: 57 GELEVKVGDFVTVTIESVENGFGETKLSREKARRAADWIALEEAMEDGEILSGVINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ + ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLLDVRPIKDTSHFEGKEIEFKVIKLDRKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEATLGEERKALMENLQEGTIVKGIVKNLTDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
++ ++L G EV KV+K D++K R++L +KQL EDP + L + PQ
Sbjct: 226 RVKHPSEVLEMGQEVEAKVLKFDQDKQRVSLGLKQLGEDP-WDGLARRYPQ 275
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y +S ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 ARRYPQSTRLF-GKVSNLTEYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V ++ +E+ +++ K W + + + D G D+G FI L
Sbjct: 323 LGDEVEVMILDIDEDKRRISLGMKQCQSNPWKDFEANYSKGDKIKGAVKSITDFGVFIGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 383 --PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEG 437
Query: 263 DPL 265
DP
Sbjct: 438 DPF 440
>gi|365969795|ref|YP_004951356.1| 30S ribosomal protein S1 [Enterobacter cloacae EcWSU1]
gi|365748708|gb|AEW72935.1| 30S ribosomal protein S1 [Enterobacter cloacae EcWSU1]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV------W---NKYSSRVNVEDIFVGRDYGA 199
KG I+ V+Q + E +++ K W NK + VN + V GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKVTAVDA-KGA 466
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS++
Sbjct: 467 TVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSVRA 521
Query: 260 LEE 262
+E
Sbjct: 522 KDE 524
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
Length = 568
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ N + + D + + +++ A W G + +G I G
Sbjct: 66 GELEVNPGDFIHVAIEALEDGYGETRLSRDKAKRIAAWNDLEKALNEGTLVKGVISGRVK 125
Query: 113 GGLLVRFFSLVGFLP--FPQMSP-----SHSCKEPQKSIHEIAKGLTGSIISVKVI---Q 162
GGL V S+ FLP M P + KE + + ++ + ++S + +
Sbjct: 126 GGLTVMTNSIRAFLPGSLVDMRPVKDTSPYEGKEYEFKVIKLDRKRNNVVVSRRAVLEES 185
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE +KL+ + K+ K V++I DYGAF+ L DGL H+T L +
Sbjct: 186 MGEERQKLLENLKEGTVVKGV----VKNIT---DYGAFVDLGGIDGLLHITDL------A 232
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++LN GDE+ KV+K D+EK+R++L +KQL EDP + + + PQG + K
Sbjct: 233 WRRVRHPSEVLNVGDEIEAKVLKFDQEKNRVSLGLKQLGEDPWV-GISRRYPQGTRLFGK 291
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH G + V +++ +E+ +++ K W+ ++ D G+
Sbjct: 322 KNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCASNPWDDFAINHKKGDKVRGQIKS 381
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L DG + GLVH+S++SW + +D +GDEV V+ ID E+ R
Sbjct: 382 ITDFGVFIGL---DG--GIDGLVHLSDLSWSESGEDAVRKFKKGDEVEAVVLAIDVERER 436
Query: 253 ITLSIKQLEEDPL 265
I+L IKQLE DP
Sbjct: 437 ISLGIKQLEGDPF 449
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G ++ G V + G L ++ + P + ++ G I K
Sbjct: 200 GTVVKGVVKNITDYGAFVDLGGIDGLLHITDLA-WRRVRHPSEVLN------VGDEIEAK 252
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K + W S R G+ DYGAF+ +
Sbjct: 253 VLKFDQEKNRVSLGLKQLGEDPWVGISRRYPQGTRLFGKVTNITDYGAFVEVE-----QG 307
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI+L +KQ +P
Sbjct: 308 IEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCASNP 361
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G + SE + + D+ +L EGDE+ + +I +DR+ I LSI+ ++ E ++
Sbjct: 481 EVEGYLRASEAAPHRVDDLTTMLKEGDELELMIINVDRKTRSINLSIRAKDQAEQTEAMQ 540
Query: 271 KVIPQ 275
K+ +
Sbjct: 541 KLASE 545
>gi|354722801|ref|ZP_09037016.1| 30S ribosomal protein S1 [Enterobacter mori LMG 25706]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|254670492|emb|CBA06216.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha153]
Length = 589
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 87 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVK 146
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 147 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 202
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 203 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 255
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 256 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 312
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 301 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 353
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 354 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 412
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 413 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 468
Query: 264 PL 265
P
Sbjct: 469 PF 470
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 219 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 271
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + W+ + R G+ DYGAF+ +
Sbjct: 272 AKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 326
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 327 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRISLGMKQCQANPWEE 385
>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 110 WERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 159 DLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLE 269
>gi|449459770|ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
gi|449517357|ref|XP_004165712.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + +GK+ N GG++ L GF+PF Q+S + +E
Sbjct: 177 WERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEE---------- 226
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 227 -LLSKELPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDI- 283
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 284 -----GGINGLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTP 338
>gi|434400436|ref|YP_007134440.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428271533|gb|AFZ37474.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 332
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ + N GG LVR L GF+P +S KE ++
Sbjct: 110 WERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS----AKEAKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + G + YGAFI +
Sbjct: 160 -LVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVRGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLE 269
>gi|192362187|ref|YP_001982579.1| 30S ribosomal protein S1 [Cellvibrio japonicus Ueda107]
gi|190688352|gb|ACE86030.1| ribosomal protein S1 [Cellvibrio japonicus Ueda107]
Length = 558
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + +G I G GG V + FLP + +
Sbjct: 85 SREKAKRAEA-WKILEAAHVAEEVIKGVINGKVKGGFTVDVAGIRAFLPGSLV----DVR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+++ H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRETTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVLEQANSVERDELLSSLQEGQA 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPGEIVNVGDEIEVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP ++ + K P+G
Sbjct: 249 DRERNRVSLGLKQLGEDPWIQ-ITKRYPEG 277
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K + G I V V+ +EE +++ K + W+
Sbjct: 302 GLIHVSEMDWTNKNIHPSKVVQ------LGDEIEVMVLDIDEERRRISLGLKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++ D G+ D+G FI L DG + GLVH+S++SW + ++
Sbjct: 356 AFARTCAKGDKITGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWHEAGEEAVRKYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ V+ ID E+ RI+L IKQLE DP E
Sbjct: 411 KGDEIETVVLAIDPERERISLGIKQLEADPFSE 443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F L + GL+HVSE+ W ++I ++ GDE+ V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLIHVSEMDW-TNKNIHPSKVVQLGDEIEVMVLDIDEERRRI 342
Query: 254 TLSIKQLEEDP 264
+L +KQ +E+P
Sbjct: 343 SLGLKQCQENP 353
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ SE+S + ++D R++L GDEV K+I +DR+ I+LS+K
Sbjct: 474 VEGVLKASELSREKVEDARNLLKAGDEVEAKIIAVDRKNRTISLSVK 520
>gi|225432062|ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + +GK+ G N GG++ L GF+PF Q+S + +E
Sbjct: 173 WERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEE---------- 222
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + VK ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 223 -LLDKELPVKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG 280
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 281 ------GINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 334
>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 448
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 24/191 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ RA ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 253 WEKVRALEKEGKVIQVKVNGFNHGGITCDVEGLRGFVPRSQLQEGEN--------HEA-- 302
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N + +KLV SEK A + V + G + YG F+ L
Sbjct: 303 -LVGKTLGVAFLEVNPDTRKLVLSEKKAATAALFQNLEVGQLVEGQVVAIKPYGLFVDL- 360
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++D+R++ +GD V+ + ++D + RI L+ LE P
Sbjct: 361 -----GGISGLLHHSVITGGQMRDLREVFGQGDRVKALITELDPGRGRIALNTALLEGQP 415
Query: 265 --LLETLEKVI 273
LL +KV+
Sbjct: 416 GELLIERDKVM 426
>gi|334122618|ref|ZP_08496655.1| 30S ribosomal protein S1 [Enterobacter hormaechei ATCC 49162]
gi|419957630|ref|ZP_14473696.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae GS1]
gi|295096388|emb|CBK85478.1| SSU ribosomal protein S1P [Enterobacter cloacae subsp. cloacae NCTC
9394]
gi|333391977|gb|EGK63085.1| 30S ribosomal protein S1 [Enterobacter hormaechei ATCC 49162]
gi|388607788|gb|EIM36992.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae GS1]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|423119519|ref|ZP_17107203.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5246]
gi|376398173|gb|EHT10800.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5246]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|261339245|ref|ZP_05967103.1| hypothetical protein ENTCAN_05481 [Enterobacter cancerogenus ATCC
35316]
gi|288319102|gb|EFC58040.1| ribosomal protein S1 [Enterobacter cancerogenus ATCC 35316]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -FKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
>gi|448241462|ref|YP_007405515.1| 30S ribosomal subunit protein S1 [Serratia marcescens WW4]
gi|445211826|gb|AGE17496.1| 30S ribosomal subunit protein S1 [Serratia marcescens WW4]
gi|453066850|gb|EMF07774.1| 30S ribosomal protein S1 [Serratia marcescens VGH107]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSMNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D I+D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL-----AGGVEGYLRASEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9303]
Length = 481
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 286 WSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGEN--------HEA-- 335
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + V + G + YG FI L
Sbjct: 336 -LVGKTLGVAFLEVNPETRKLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFFIDL- 393
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R++ N+GD V+ + ++D + RI L+ LE P
Sbjct: 394 -----GGVSGLLHQSMITGGSLRSLREVFNQGDRVKALITEMDPGRGRIALNTALLEGQP 448
>gi|261377757|ref|ZP_05982330.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
gi|269146043|gb|EEZ72461.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
Length = 561
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGIFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDESRRRI 343
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 344 SLGMKQCQANPWEE 357
>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 386
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 183 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPG-----SHISTRKPKEE---- 232
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 233 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 289
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 290 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 343
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 344 EPGDMLTDPQKVFEKAEE--MAARYKQML 370
>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 328
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 110 WERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 159 DLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLE 269
>gi|296103087|ref|YP_003613233.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392978367|ref|YP_006476955.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|401675428|ref|ZP_10807421.1| 30S ribosomal protein S1 [Enterobacter sp. SST3]
gi|401763027|ref|YP_006578034.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|295057546|gb|ADF62284.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392324300|gb|AFM59253.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|400174561|gb|AFP69410.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400217406|gb|EJO48299.1| 30S ribosomal protein S1 [Enterobacter sp. SST3]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV------W---NKYSSRVNVEDIFVGRDYGA 199
KG I+ V+Q + E +++ K W NK + VN + V GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKVTAVDA-KGA 466
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS++
Sbjct: 467 TVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSVRA 521
Query: 260 LEE 262
+E
Sbjct: 522 KDE 524
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|261821283|ref|YP_003259389.1| 30S ribosomal protein S1 [Pectobacterium wasabiae WPP163]
gi|261605296|gb|ACX87782.1| ribosomal protein S1 [Pectobacterium wasabiae WPP163]
Length = 565
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 93 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 147
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 148 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 202
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 203 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 256
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 257 DRERTRVSLGLKQLGEDP 274
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+++ + +R+
Sbjct: 362 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVVGEEAVRE 416
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 417 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 449
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 183 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 241
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 242 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 295
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 296 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 349
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 350 ISLGLKQCKSNP 361
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + +E ++ E
Sbjct: 362 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVVGEE---AVREYK 418
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 419 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 475
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++
Sbjct: 476 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAK 530
Query: 261 EE 262
+E
Sbjct: 531 DE 532
>gi|146311087|ref|YP_001176161.1| 30S ribosomal protein S1 [Enterobacter sp. 638]
gi|145317963|gb|ABP60110.1| SSU ribosomal protein S1P [Enterobacter sp. 638]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVAVNKKGAIVNGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
HF0200_09I09]
Length = 677
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 22/189 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R W+ + E+G I+E +I GFN GGLL + F+P Q+ + + +
Sbjct: 174 RARGEQGWRILQDRFENGEIFEAEITGFNKGGLLANVEGVNAFIPMSQVVGAKPGTDGAQ 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVG------ 194
S+ + G + +KVI+ N + + SE+ A+ W + ++ G
Sbjct: 234 SLSD----QVGRELRMKVIEINRRRNRAILSERAAMQEWRAEQKERLLGELAEGEVRKGT 289
Query: 195 ----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
R++G F+ L DGL HL SE+SWD D + G ++ V +++IDR+
Sbjct: 290 VTSIRNFGVFVDLGGADGLAHL------SELSWDRNADPEQLFQVGQDIDVYIMRIDRDS 343
Query: 251 SRITLSIKQ 259
+I LS+++
Sbjct: 344 KKIALSVRR 352
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQ-----GFNGGGLLVRFFSLVGFLPFPQMSPSHS 136
S+ + +W+A + + G + EG+++ G+ V G ++S +
Sbjct: 260 SERAAMQEWRAEQKERLLGELAEGEVRKGTVTSIRNFGVFVDLGGADGLAHLSELSWDRN 319
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 193
+P++ G I V +++ + + KK+ S + A W S+ V D+
Sbjct: 320 A-DPEQLFQ------VGQDIDVYIMRIDRDSKKIALSVRRAAPEQWQDLISQYEVGDVVP 372
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G +GAF L P + GL HVSE+ I +IL EGD V +K+++I+
Sbjct: 373 GIVTKVVAFGAFTRLPGP-----VEGLAHVSELVDRRINSPEEILIEGDVVPLKIVRIEH 427
Query: 249 EKSRITLSIKQLEED 263
++ R+ LS+++ ++
Sbjct: 428 DRHRLGLSLREARQE 442
>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 367
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 213
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 214 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDI 271
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 272 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 325
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 326 PGDMLTDPQKVFDKAEE--MAARYKQML 351
>gi|345875668|ref|ZP_08827459.1| ribosomal protein S1 [Neisseria weaveri LMG 5135]
gi|417958271|ref|ZP_12601186.1| ribosomal protein S1 [Neisseria weaveri ATCC 51223]
gi|343966929|gb|EGV35180.1| ribosomal protein S1 [Neisseria weaveri ATCC 51223]
gi|343968743|gb|EGV36967.1| ribosomal protein S1 [Neisseria weaveri LMG 5135]
Length = 559
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEVTLGEERKALLENLQEGSVVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WNGLARRYPQGTRLFGK 282
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEI 147
W AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 266 WNGLARRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ-- 322
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGA 199
G + V +++ +E+ +++ K W +++ N D G D+G
Sbjct: 323 ----LGDEVEVMILEIDEDRRRISLGMKQCQANPWEDFAANHNKGDKLSGAVKSITDFGV 378
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+ L P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IK
Sbjct: 379 FVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIK 433
Query: 259 QLEEDPL 265
QLE DP
Sbjct: 434 QLEGDPF 440
>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
NATL1A]
Length = 369
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 166 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 215
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 216 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDI 273
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 274 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 327
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 328 PGDMLTDPQKVFDKAEE--MAARYKQML 353
>gi|162420786|ref|YP_001606429.1| 30S ribosomal protein S1 [Yersinia pestis Angola]
gi|162353601|gb|ABX87549.1| ribosomal protein S1 [Yersinia pestis Angola]
Length = 557
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDCVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|440288273|ref|YP_007341038.1| SSU ribosomal protein S1P [Enterobacteriaceae bacterium strain FGI
57]
gi|440047795|gb|AGB78853.1| SSU ribosomal protein S1P [Enterobacteriaceae bacterium strain FGI
57]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 227
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|209695657|ref|YP_002263586.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
gi|208009609|emb|CAQ79905.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+++
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIQLEKAYEDAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + ++H L G + KVI
Sbjct: 108 VM-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTLH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V++ +EE +++ K W ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDHVSGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+ RI+L +K
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNATGEDAVREYKKGDEISAVVLAVDAERERISLGVK 434
Query: 259 QLEEDPL 265
Q+EEDP
Sbjct: 435 QMEEDPF 441
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|59712366|ref|YP_205142.1| 30S ribosomal protein S1 [Vibrio fischeri ES114]
gi|197334803|ref|YP_002156581.1| 30S ribosomal protein S1 [Vibrio fischeri MJ11]
gi|423686535|ref|ZP_17661343.1| 30S ribosomal protein S1 [Vibrio fischeri SR5]
gi|59480467|gb|AAW86254.1| 30S ribosomal subunit protein S1 [Vibrio fischeri ES114]
gi|197316293|gb|ACH65740.1| ribosomal protein S1 [Vibrio fischeri MJ11]
gi|371494603|gb|EHN70201.1| 30S ribosomal protein S1 [Vibrio fischeri SR5]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+++
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIQLEKAYEDAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + ++H L G + KVI
Sbjct: 108 VM-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTLH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V++ +EE +++ K W ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+ RI+L +K
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNATGEDAVREYKKGDEISAVVLAVDAERERISLGVK 434
Query: 259 QLEEDPL 265
Q+EEDP
Sbjct: 435 QMEEDPF 441
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|403058181|ref|YP_006646398.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805507|gb|AFR03145.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 569
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 97 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 152 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 206
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 207 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 260
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 261 DRERTRVSLGLKQLGEDP 278
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -FKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKSNP 365
>gi|354597947|ref|ZP_09015964.1| ribosomal protein S1 [Brenneria sp. EniD312]
gi|353675882|gb|EHD21915.1| ribosomal protein S1 [Brenneria sp. EniD312]
Length = 569
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 97 SREKAKRHEAWLTLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 152 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 206
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 207 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 260
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 261 DRERTRVSLGLKQLGEDP 278
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKANP 365
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++
Sbjct: 480 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAK 534
Query: 261 EE 262
+E
Sbjct: 535 DE 536
>gi|421079040|ref|ZP_15539985.1| 30S ribosomal protein S1 [Pectobacterium wasabiae CFBP 3304]
gi|385871519|gb|AFI90039.1| 30S ribosomal protein S1 [Pectobacterium sp. SCC3193]
gi|401706227|gb|EJS96405.1| 30S ribosomal protein S1 [Pectobacterium wasabiae CFBP 3304]
Length = 569
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 97 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 152 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 206
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 207 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 260
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 261 DRERTRVSLGLKQLGEDP 278
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+++ + +R+
Sbjct: 366 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVVGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKSNP 365
>gi|238920345|ref|YP_002933860.1| 30S ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
gi|238869914|gb|ACR69625.1| 30S ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEDAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|51595757|ref|YP_069948.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
gi|145599575|ref|YP_001163651.1| 30S ribosomal protein S1 [Yersinia pestis Pestoides F]
gi|153949259|ref|YP_001401545.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
gi|170024893|ref|YP_001721398.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
gi|186894835|ref|YP_001871947.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
gi|51589039|emb|CAH20657.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
gi|145211271|gb|ABP40678.1| SSU ribosomal protein S1P [Yersinia pestis Pestoides F]
gi|152960754|gb|ABS48215.1| ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
gi|169751427|gb|ACA68945.1| ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
gi|186697861|gb|ACC88490.1| ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 369
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 166 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 215
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 216 --LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDI 273
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 274 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 327
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 328 PGDMLTDPQKVFDKAEE--MAARYKQML 353
>gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
Length = 660
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 29/196 (14%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
DWK RA E+ + E + N GL+V SL GF+P Q KS+
Sbjct: 375 DWKEVRAAFEADELVECVGKETNKAGLVVAIKSLRGFIPLSQGDVRFV-----KSLDY-- 427
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRD------------ 196
L G +VKVI +E +LV S K AV + E + +
Sbjct: 428 --LVGETFTVKVIDMDEHKNRLVLSRK-AVLEVEREKKRAEVLKTIEEGSVVEGTVVKVM 484
Query: 197 -YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI L + GL+H+S++SW I + D+L G++V V V K D E++RI+L
Sbjct: 485 PYGAFIDLG------GVEGLLHISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISL 538
Query: 256 SIKQLEEDPLLETLEK 271
S+K L+++P + +EK
Sbjct: 539 SMKALQKNPWIVAVEK 554
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 73 DSSDANNRQSQSRSSA-----DWKAARAYK--ESGFIYEGKIQGFNGGGLLVRFFSLVGF 125
D + NR SR + + K A K E G + EG + G + + G
Sbjct: 439 DMDEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDLGGVEGL 498
Query: 126 LPFPQMSPSHSCKEPQKSIHEIAKGL-TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS 184
L +S K I+ + L G + V V + +EE ++ S K N +
Sbjct: 499 LHISDIS--------WKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKNPWI- 549
Query: 185 RVNVEDIFVGRDYGAFIHLRFPDGLY-----HLTGLVHVSEVSWDLIQDIRDILNEGDEV 239
V VE VG + P G L GL+HVSE++ ++D++ GD +
Sbjct: 550 -VAVEKFEVGDVVKGEVKKLLPFGAILAIDPELQGLLHVSELTDKRGAVVKDLIAVGDVL 608
Query: 240 RVKVIKIDREKSRITLSIKQLEED 263
VK+I ID +K +I+LS+ +EED
Sbjct: 609 DVKIIGIDTDKKKISLSVVAIEED 632
>gi|225075203|ref|ZP_03718402.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
NRL30031/H210]
gi|261380192|ref|ZP_05984765.1| ribosomal protein S1 [Neisseria subflava NJ9703]
gi|319638403|ref|ZP_07993165.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
gi|224953378|gb|EEG34587.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
NRL30031/H210]
gi|284797039|gb|EFC52386.1| ribosomal protein S1 [Neisseria subflava NJ9703]
gi|317400152|gb|EFV80811.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
Length = 561
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRI 343
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 344 SLGMKQCQANPWEE 357
>gi|237808314|ref|YP_002892754.1| 30S ribosomal protein S1 [Tolumonas auensis DSM 9187]
gi|237500575|gb|ACQ93168.1| ribosomal protein S1 [Tolumonas auensis DSM 9187]
Length = 556
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY+E + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLQLEKAYEEQATVV-GLINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D++ +
Sbjct: 140 PVRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIETENSSERDSLLSSLQEGHE 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GARLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W +++ D G+ D+G
Sbjct: 324 ----VGDTVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHAKGDRVSGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+ RI+L +K
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNATGEDAVREFKKGDEIEAVVLQVDPERERISLGVK 434
Query: 259 QLEEDPL 265
Q+EEDP
Sbjct: 435 QIEEDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGARLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|50121515|ref|YP_050682.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
gi|49612041|emb|CAG75490.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLSEDPF 441
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLSEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|241758882|ref|ZP_04756995.1| ribosomal protein S1 [Neisseria flavescens SK114]
gi|241321090|gb|EER57303.1| ribosomal protein S1 [Neisseria flavescens SK114]
Length = 559
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 282
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 271 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 323
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 324 GDEVEVMILEIDEDRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 382
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 383 -PGGI---DGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 438
Query: 264 PL 265
P
Sbjct: 439 PF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI
Sbjct: 288 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRI 341
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 342 SLGMKQCQANPWEE 355
>gi|291326411|ref|ZP_06124376.2| ribosomal protein S1 [Providencia rettgeri DSM 1131]
gi|291314430|gb|EFE54883.1| ribosomal protein S1 [Providencia rettgeri DSM 1131]
Length = 569
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKSNP 365
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ I LS++
Sbjct: 480 VELTLG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAK 534
Query: 261 EE 262
+E
Sbjct: 535 DE 536
>gi|123441852|ref|YP_001005835.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238749770|ref|ZP_04611275.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
gi|238763339|ref|ZP_04624303.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
gi|238784530|ref|ZP_04628538.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
gi|238789317|ref|ZP_04633104.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
gi|238792399|ref|ZP_04636033.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
gi|238795851|ref|ZP_04639364.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
gi|332162206|ref|YP_004298783.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386307864|ref|YP_006003920.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241223|ref|ZP_12867754.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420259014|ref|ZP_14761734.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548185|ref|ZP_20504235.1| SSU ribosomal protein S1p [Yersinia enterocolitica IP 10393]
gi|122088813|emb|CAL11619.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238698438|gb|EEP91191.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
gi|238712425|gb|EEQ04638.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
gi|238714593|gb|EEQ06597.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
gi|238720314|gb|EEQ12117.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
gi|238722649|gb|EEQ14302.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
gi|238728325|gb|EEQ19845.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
gi|318606262|emb|CBY27760.1| SSU ribosomal protein S1p [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666436|gb|ADZ43080.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862894|emb|CBX73031.1| 30S ribosomal protein S1 [Yersinia enterocolitica W22703]
gi|351779326|gb|EHB21438.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404513546|gb|EKA27361.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790745|emb|CCO67275.1| SSU ribosomal protein S1p [Yersinia enterocolitica IP 10393]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|383764899|ref|YP_005443881.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385167|dbj|BAM01984.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 363
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQ 141
+ ++ DW A ESG I K+ G+N GGL V F + GF+P SH P+
Sbjct: 86 ADAQQKRDWLIAEQLLESGEITTRKVVGYNKGGLTVEFNHIRGFVP-----ASHLVDMPR 140
Query: 142 KSIHEIAKG----LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVED 190
E + G + +KVI+ + + ++LV S+ A S++ ++V D
Sbjct: 141 NLTEEQRRAELESRIGEEMRLKVIEVDPKRRRLVMSQMLAEREYRSTQREELFKTLSVGD 200
Query: 191 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
+ G R +GAF+ + DGL +HVSE+ + I R++L+ G +++V+VI+
Sbjct: 201 VVEGVVRSIRPFGAFVDIGGVDGL------LHVSEIGYGNINHPREVLSVGQKIQVQVIR 254
Query: 246 IDREKSRITLSIKQLEEDP 264
ID E R+ LS ++L +P
Sbjct: 255 IDPETQRVALSRRKLLPNP 273
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G I V+VI+ + E +++ S + + W+ R V I D+GAF L
Sbjct: 244 VGQKIQVQVIRIDPETQRVALSRRKLLPNPWDGIEERYPVGSIVPATITRLSDFGAFAEL 303
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GL+H+SE++ + + + GD V VKV+++D ++ R+ LSI+Q E
Sbjct: 304 E-----PGVEGLIHISELADIAVAEPLKTVKPGDRVMVKVLRVDPKRQRVGLSIRQANE 357
>gi|269139520|ref|YP_003296221.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
gi|387868096|ref|YP_005699565.1| 30S ribosomal protein S1 [Edwardsiella tarda FL6-60]
gi|267985181|gb|ACY85010.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
gi|304559409|gb|ADM42073.1| SSU ribosomal protein S1p [Edwardsiella tarda FL6-60]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEDAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|212709792|ref|ZP_03317920.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
30120]
gi|212687603|gb|EEB47131.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
30120]
Length = 582
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 111 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 165
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 166 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEV 220
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 221 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 274
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 275 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 302
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +RD
Sbjct: 379 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRD 433
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 434 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 466
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 200 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 258
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 259 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 312
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 313 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 366
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 367 ISLGLKQCKSNP 378
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E + +
Sbjct: 379 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVRDYKK-- 436
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 437 ----GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 492
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ I LS++
Sbjct: 493 VELTLG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAK 547
Query: 261 EE 262
+E
Sbjct: 548 DE 549
>gi|383814714|ref|ZP_09970133.1| 30S ribosomal protein S1 [Serratia sp. M24T3]
gi|383296491|gb|EIC84806.1| 30S ribosomal protein S1 [Serratia sp. M24T3]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKDLEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 250 RERTRVSLGLKQLGEDP 266
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
EGKI+ G+ + + G + +S + + +E ++ E KG I+ V+Q
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYKKG---DEIAAVVLQ 421
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+ E +++ K +N Y S I G+ GA + L + G
Sbjct: 422 VDAERERISLGVKQLAEDPFNNYLSVNKKGTIVTGKVTAVDAKGATVEL-----AGGVEG 476
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ SE S D I+D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 477 YLRASEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
>gi|261344290|ref|ZP_05971934.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
gi|282567894|gb|EFB73429.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVTGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVTGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ I LS++
Sbjct: 468 VELTLG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|254447274|ref|ZP_05060741.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
gi|198263413|gb|EDY87691.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESG 100
+ P +F+ +A + TV LD D SR A W E+
Sbjct: 46 GVIPASQFTNSAGDLEVNVGDTVEVALDTVEDGFGETRLSREKAKRARTWAVLEKAHEAE 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
I EG+I G GG V + FLP + + + + A L G + KV
Sbjct: 106 EIVEGEITGKVKGGFTVEIDQVRAFLPGSLVDV--------RPVRDTAY-LEGKTLEFKV 156
Query: 161 IQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVG-----RDYGAFIHLRFPDG 208
I+ + + +V S + V YS + + I G DYGAF+ L DG
Sbjct: 157 IKMDRKRNNVVVSRRAVVETMYSEEREELLNNLTEGAIVTGVVKNLTDYGAFLDLGGIDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W + +++ GDE++V V+K DREK+R++L +KQL +DP E
Sbjct: 217 LLHIT------DMAWKRVHHPSEVVAVGDEIQVVVLKFDREKTRVSLGLKQLGDDP-WED 269
Query: 269 LEKVIPQG 276
+ + P+G
Sbjct: 270 ITRRYPEG 277
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y E ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 RRYPEGSRLF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNVNPGKMVA------L 324
Query: 153 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V ++ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 325 GDEVEVMILDIDEERRRISLGMKQCHANPWEAFAATHNKGDKIEGKIKSITDFGIFIGL- 383
Query: 205 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SWD+ + +RD +GDE+ V+ +D E+ RI+L +KQLE+
Sbjct: 384 --DG--GIDGLVHLSDLSWDVAGEEAVRD-FKKGDELEAVVLAVDPERERISLGVKQLEQ 438
Query: 263 DPL 265
DP
Sbjct: 439 DPF 441
>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
Length = 441
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 24/181 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE-PQKSIHEIA 148
W + ++EG I N GG +V L GFLP SH C P +
Sbjct: 200 WSKVEDMQAEDVVFEGPIIAVNRGGAIVLVEGLRGFLP-----GSHMCGGLPTED----- 249
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G ++ K ++ N E KLV S + AV + ++ D+ G + YGAF+ +
Sbjct: 250 --AVGKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKELSRGDVVEGHVKAIKPYGAFVEI 307
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
R ++GL+H+S++S+D I+D+ I+ G +++ +I D+ RI LS K LE +
Sbjct: 308 R------GMSGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVNGRIALSTKTLEPE 361
Query: 264 P 264
P
Sbjct: 362 P 362
>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
Length = 363
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 160 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 209
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 210 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 266
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 267 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 320
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 321 EPGDMLTDPQKVFEKAEE--MAARYKQML 347
>gi|253688122|ref|YP_003017312.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754700|gb|ACT12776.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +LN GD V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|22126658|ref|NP_670081.1| 30S ribosomal protein S1 [Yersinia pestis KIM10+]
gi|45441028|ref|NP_992567.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
91001]
gi|108806680|ref|YP_650596.1| 30S ribosomal protein S1 [Yersinia pestis Antiqua]
gi|108812746|ref|YP_648513.1| 30S ribosomal protein S1 [Yersinia pestis Nepal516]
gi|149366649|ref|ZP_01888683.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
gi|165924533|ref|ZP_02220365.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938978|ref|ZP_02227531.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
gi|166009737|ref|ZP_02230635.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211469|ref|ZP_02237504.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399783|ref|ZP_02305301.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419527|ref|ZP_02311280.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424191|ref|ZP_02315944.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|218928540|ref|YP_002346415.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
gi|229841362|ref|ZP_04461521.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229843467|ref|ZP_04463613.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229895840|ref|ZP_04511010.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
gi|229903154|ref|ZP_04518267.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
gi|270486949|ref|ZP_06204023.1| ribosomal protein S1 [Yersinia pestis KIM D27]
gi|294503382|ref|YP_003567444.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
gi|384121827|ref|YP_005504447.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
gi|384125377|ref|YP_005507991.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
gi|384140749|ref|YP_005523451.1| 30S ribosomal protein S1 [Yersinia pestis A1122]
gi|384415245|ref|YP_005624607.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420546098|ref|ZP_15044133.1| ribosomal protein S1 [Yersinia pestis PY-01]
gi|420551402|ref|ZP_15048882.1| ribosomal protein S1 [Yersinia pestis PY-02]
gi|420556944|ref|ZP_15053771.1| ribosomal protein S1 [Yersinia pestis PY-03]
gi|420562496|ref|ZP_15058652.1| ribosomal protein S1 [Yersinia pestis PY-04]
gi|420567512|ref|ZP_15063192.1| ribosomal protein S1 [Yersinia pestis PY-05]
gi|420573164|ref|ZP_15068318.1| ribosomal protein S1 [Yersinia pestis PY-06]
gi|420578492|ref|ZP_15073145.1| ribosomal protein S1 [Yersinia pestis PY-07]
gi|420583859|ref|ZP_15078023.1| ribosomal protein S1 [Yersinia pestis PY-08]
gi|420589004|ref|ZP_15082659.1| ribosomal protein S1 [Yersinia pestis PY-09]
gi|420594321|ref|ZP_15087447.1| ribosomal protein S1 [Yersinia pestis PY-10]
gi|420600008|ref|ZP_15092528.1| ribosomal protein S1 [Yersinia pestis PY-11]
gi|420605480|ref|ZP_15097427.1| ribosomal protein S1 [Yersinia pestis PY-12]
gi|420610840|ref|ZP_15102270.1| ribosomal protein S1 [Yersinia pestis PY-13]
gi|420616136|ref|ZP_15106960.1| ribosomal protein S1 [Yersinia pestis PY-14]
gi|420621527|ref|ZP_15111715.1| ribosomal protein S1 [Yersinia pestis PY-15]
gi|420626581|ref|ZP_15116299.1| ribosomal protein S1 [Yersinia pestis PY-16]
gi|420631781|ref|ZP_15120998.1| ribosomal protein S1 [Yersinia pestis PY-19]
gi|420636895|ref|ZP_15125577.1| ribosomal protein S1 [Yersinia pestis PY-25]
gi|420642438|ref|ZP_15130593.1| ribosomal protein S1 [Yersinia pestis PY-29]
gi|420647620|ref|ZP_15135324.1| ribosomal protein S1 [Yersinia pestis PY-32]
gi|420653271|ref|ZP_15140399.1| ribosomal protein S1 [Yersinia pestis PY-34]
gi|420658782|ref|ZP_15145353.1| ribosomal protein S1 [Yersinia pestis PY-36]
gi|420664064|ref|ZP_15150076.1| ribosomal protein S1 [Yersinia pestis PY-42]
gi|420669066|ref|ZP_15154613.1| ribosomal protein S1 [Yersinia pestis PY-45]
gi|420674365|ref|ZP_15159438.1| ribosomal protein S1 [Yersinia pestis PY-46]
gi|420679924|ref|ZP_15164471.1| ribosomal protein S1 [Yersinia pestis PY-47]
gi|420685179|ref|ZP_15169179.1| ribosomal protein S1 [Yersinia pestis PY-48]
gi|420690367|ref|ZP_15173770.1| ribosomal protein S1 [Yersinia pestis PY-52]
gi|420696164|ref|ZP_15178854.1| ribosomal protein S1 [Yersinia pestis PY-53]
gi|420701575|ref|ZP_15183445.1| ribosomal protein S1 [Yersinia pestis PY-54]
gi|420707512|ref|ZP_15188306.1| ribosomal protein S1 [Yersinia pestis PY-55]
gi|420712861|ref|ZP_15193118.1| ribosomal protein S1 [Yersinia pestis PY-56]
gi|420718268|ref|ZP_15197851.1| ribosomal protein S1 [Yersinia pestis PY-58]
gi|420723849|ref|ZP_15202663.1| ribosomal protein S1 [Yersinia pestis PY-59]
gi|420729473|ref|ZP_15207683.1| ribosomal protein S1 [Yersinia pestis PY-60]
gi|420734520|ref|ZP_15212241.1| ribosomal protein S1 [Yersinia pestis PY-61]
gi|420739992|ref|ZP_15217169.1| ribosomal protein S1 [Yersinia pestis PY-63]
gi|420745399|ref|ZP_15221893.1| ribosomal protein S1 [Yersinia pestis PY-64]
gi|420751122|ref|ZP_15226823.1| ribosomal protein S1 [Yersinia pestis PY-65]
gi|420756457|ref|ZP_15231411.1| ribosomal protein S1 [Yersinia pestis PY-66]
gi|420762240|ref|ZP_15236164.1| ribosomal protein S1 [Yersinia pestis PY-71]
gi|420767499|ref|ZP_15240911.1| ribosomal protein S1 [Yersinia pestis PY-72]
gi|420772474|ref|ZP_15245383.1| ribosomal protein S1 [Yersinia pestis PY-76]
gi|420777924|ref|ZP_15250240.1| ribosomal protein S1 [Yersinia pestis PY-88]
gi|420783439|ref|ZP_15255074.1| ribosomal protein S1 [Yersinia pestis PY-89]
gi|420788770|ref|ZP_15259779.1| ribosomal protein S1 [Yersinia pestis PY-90]
gi|420794239|ref|ZP_15264716.1| ribosomal protein S1 [Yersinia pestis PY-91]
gi|420799360|ref|ZP_15269318.1| ribosomal protein S1 [Yersinia pestis PY-92]
gi|420804705|ref|ZP_15274134.1| ribosomal protein S1 [Yersinia pestis PY-93]
gi|420809962|ref|ZP_15278886.1| ribosomal protein S1 [Yersinia pestis PY-94]
gi|420815645|ref|ZP_15283986.1| ribosomal protein S1 [Yersinia pestis PY-95]
gi|420820843|ref|ZP_15288686.1| ribosomal protein S1 [Yersinia pestis PY-96]
gi|420825932|ref|ZP_15293243.1| ribosomal protein S1 [Yersinia pestis PY-98]
gi|420831702|ref|ZP_15298458.1| ribosomal protein S1 [Yersinia pestis PY-99]
gi|420836553|ref|ZP_15302832.1| ribosomal protein S1 [Yersinia pestis PY-100]
gi|420841701|ref|ZP_15307494.1| ribosomal protein S1 [Yersinia pestis PY-101]
gi|420847322|ref|ZP_15312566.1| ribosomal protein S1 [Yersinia pestis PY-102]
gi|420852767|ref|ZP_15317342.1| ribosomal protein S1 [Yersinia pestis PY-103]
gi|420858251|ref|ZP_15322024.1| ribosomal protein S1 [Yersinia pestis PY-113]
gi|421762848|ref|ZP_16199645.1| 30S ribosomal protein S1 [Yersinia pestis INS]
gi|21959672|gb|AAM86332.1|AE013881_2 30S ribosomal subunit protein S1 [Yersinia pestis KIM10+]
gi|45435887|gb|AAS61444.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
91001]
gi|108776394|gb|ABG18913.1| SSU ribosomal protein S1P [Yersinia pestis Nepal516]
gi|108778593|gb|ABG12651.1| SSU ribosomal protein S1P [Yersinia pestis Antiqua]
gi|115347151|emb|CAL20044.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
gi|149291023|gb|EDM41098.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
gi|165913125|gb|EDR31749.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
gi|165923593|gb|EDR40725.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991133|gb|EDR43434.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207240|gb|EDR51720.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962268|gb|EDR58289.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050491|gb|EDR61899.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057040|gb|EDR66803.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229678924|gb|EEO75027.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
gi|229689814|gb|EEO81875.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229697728|gb|EEO87775.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700763|gb|EEO88792.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
gi|262361423|gb|ACY58144.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
gi|262365041|gb|ACY61598.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
gi|270335453|gb|EFA46230.1| ribosomal protein S1 [Yersinia pestis KIM D27]
gi|294353841|gb|ADE64182.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
gi|320015749|gb|ADV99320.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342855878|gb|AEL74431.1| 30S ribosomal protein S1 [Yersinia pestis A1122]
gi|391428977|gb|EIQ90880.1| ribosomal protein S1 [Yersinia pestis PY-01]
gi|391430275|gb|EIQ92013.1| ribosomal protein S1 [Yersinia pestis PY-02]
gi|391431691|gb|EIQ93217.1| ribosomal protein S1 [Yersinia pestis PY-03]
gi|391444857|gb|EIR05042.1| ribosomal protein S1 [Yersinia pestis PY-04]
gi|391445828|gb|EIR05921.1| ribosomal protein S1 [Yersinia pestis PY-05]
gi|391449409|gb|EIR09136.1| ribosomal protein S1 [Yersinia pestis PY-06]
gi|391461380|gb|EIR19995.1| ribosomal protein S1 [Yersinia pestis PY-07]
gi|391462405|gb|EIR20925.1| ribosomal protein S1 [Yersinia pestis PY-08]
gi|391464532|gb|EIR22808.1| ribosomal protein S1 [Yersinia pestis PY-09]
gi|391477844|gb|EIR34825.1| ribosomal protein S1 [Yersinia pestis PY-10]
gi|391479140|gb|EIR35971.1| ribosomal protein S1 [Yersinia pestis PY-12]
gi|391479280|gb|EIR36094.1| ribosomal protein S1 [Yersinia pestis PY-11]
gi|391493228|gb|EIR48603.1| ribosomal protein S1 [Yersinia pestis PY-13]
gi|391494432|gb|EIR49656.1| ribosomal protein S1 [Yersinia pestis PY-15]
gi|391496954|gb|EIR51857.1| ribosomal protein S1 [Yersinia pestis PY-14]
gi|391509207|gb|EIR62853.1| ribosomal protein S1 [Yersinia pestis PY-16]
gi|391509855|gb|EIR63439.1| ribosomal protein S1 [Yersinia pestis PY-19]
gi|391514149|gb|EIR67289.1| ribosomal protein S1 [Yersinia pestis PY-25]
gi|391524711|gb|EIR76902.1| ribosomal protein S1 [Yersinia pestis PY-29]
gi|391527357|gb|EIR79279.1| ribosomal protein S1 [Yersinia pestis PY-34]
gi|391528412|gb|EIR80228.1| ribosomal protein S1 [Yersinia pestis PY-32]
gi|391540793|gb|EIR91395.1| ribosomal protein S1 [Yersinia pestis PY-36]
gi|391542960|gb|EIR93338.1| ribosomal protein S1 [Yersinia pestis PY-42]
gi|391544152|gb|EIR94403.1| ribosomal protein S1 [Yersinia pestis PY-45]
gi|391558119|gb|EIS07034.1| ribosomal protein S1 [Yersinia pestis PY-46]
gi|391558629|gb|EIS07494.1| ribosomal protein S1 [Yersinia pestis PY-47]
gi|391559883|gb|EIS08581.1| ribosomal protein S1 [Yersinia pestis PY-48]
gi|391573276|gb|EIS20361.1| ribosomal protein S1 [Yersinia pestis PY-52]
gi|391573848|gb|EIS20830.1| ribosomal protein S1 [Yersinia pestis PY-53]
gi|391585065|gb|EIS30510.1| ribosomal protein S1 [Yersinia pestis PY-54]
gi|391585688|gb|EIS31066.1| ribosomal protein S1 [Yersinia pestis PY-55]
gi|391589273|gb|EIS34192.1| ribosomal protein S1 [Yersinia pestis PY-56]
gi|391602537|gb|EIS45816.1| ribosomal protein S1 [Yersinia pestis PY-60]
gi|391602557|gb|EIS45834.1| ribosomal protein S1 [Yersinia pestis PY-58]
gi|391604227|gb|EIS47261.1| ribosomal protein S1 [Yersinia pestis PY-59]
gi|391616938|gb|EIS58537.1| ribosomal protein S1 [Yersinia pestis PY-61]
gi|391617772|gb|EIS59285.1| ribosomal protein S1 [Yersinia pestis PY-63]
gi|391623804|gb|EIS64523.1| ribosomal protein S1 [Yersinia pestis PY-64]
gi|391628797|gb|EIS68812.1| ribosomal protein S1 [Yersinia pestis PY-65]
gi|391640022|gb|EIS78621.1| ribosomal protein S1 [Yersinia pestis PY-71]
gi|391641538|gb|EIS79929.1| ribosomal protein S1 [Yersinia pestis PY-66]
gi|391642421|gb|EIS80698.1| ribosomal protein S1 [Yersinia pestis PY-72]
gi|391652138|gb|EIS89229.1| ribosomal protein S1 [Yersinia pestis PY-76]
gi|391657602|gb|EIS94095.1| ribosomal protein S1 [Yersinia pestis PY-88]
gi|391662571|gb|EIS98485.1| ribosomal protein S1 [Yersinia pestis PY-89]
gi|391664998|gb|EIT00624.1| ribosomal protein S1 [Yersinia pestis PY-90]
gi|391671608|gb|EIT06525.1| ribosomal protein S1 [Yersinia pestis PY-91]
gi|391683142|gb|EIT16946.1| ribosomal protein S1 [Yersinia pestis PY-93]
gi|391684589|gb|EIT18239.1| ribosomal protein S1 [Yersinia pestis PY-92]
gi|391685302|gb|EIT18856.1| ribosomal protein S1 [Yersinia pestis PY-94]
gi|391697027|gb|EIT29450.1| ribosomal protein S1 [Yersinia pestis PY-95]
gi|391700716|gb|EIT32792.1| ribosomal protein S1 [Yersinia pestis PY-96]
gi|391702009|gb|EIT33951.1| ribosomal protein S1 [Yersinia pestis PY-98]
gi|391711161|gb|EIT42148.1| ribosomal protein S1 [Yersinia pestis PY-99]
gi|391717869|gb|EIT48179.1| ribosomal protein S1 [Yersinia pestis PY-100]
gi|391718311|gb|EIT48566.1| ribosomal protein S1 [Yersinia pestis PY-101]
gi|391728923|gb|EIT57967.1| ribosomal protein S1 [Yersinia pestis PY-102]
gi|391732050|gb|EIT60666.1| ribosomal protein S1 [Yersinia pestis PY-103]
gi|391736068|gb|EIT64128.1| ribosomal protein S1 [Yersinia pestis PY-113]
gi|411177054|gb|EKS47069.1| 30S ribosomal protein S1 [Yersinia pestis INS]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|255067151|ref|ZP_05319006.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
gi|340362824|ref|ZP_08685190.1| 30S ribosomal protein S1 [Neisseria macacae ATCC 33926]
gi|349611003|ref|ZP_08890319.1| 30S ribosomal protein S1 [Neisseria sp. GT4A_CT1]
gi|419798432|ref|ZP_14323842.1| ribosomal protein S1 [Neisseria sicca VK64]
gi|255048519|gb|EET43983.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
gi|339886982|gb|EGQ76585.1| 30S ribosomal protein S1 [Neisseria macacae ATCC 33926]
gi|348615033|gb|EGY64565.1| 30S ribosomal protein S1 [Neisseria sp. GT4A_CT1]
gi|385694654|gb|EIG25242.1| ribosomal protein S1 [Neisseria sicca VK64]
Length = 561
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSIIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID +K RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVDKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSIIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357
>gi|238757619|ref|ZP_04618803.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
gi|238704124|gb|EEP96657.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +RD
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRD 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|227111988|ref|ZP_03825644.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328155|ref|ZP_03832179.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLTLEKAYEEAATVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -FKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|406978540|gb|EKE00487.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 367
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK-------SIHEI 147
AYK+ G + E I +N GGLL F + GF+P + H + K +
Sbjct: 111 AYKD-GSVLEATIIEYNKGGLLADCFGMRGFIPLSHLDRVHFANDIAKFAAGSEAELKSS 169
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--------SRVNVEDIFVG----- 194
K L+G ++ VK+I+ ++ ++V SEKDA+ + YS S + DI G
Sbjct: 170 LKVLSGKVLKVKIIELDKVKNRMVLSEKDAL-STYSESARQEKLSTIKENDILEGIVTGI 228
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+G F+ L DG + GLVH+SE++W+ + G+ V+VKV+ +D ++
Sbjct: 229 MPFGVFVDL---DG---VEGLVHISEIAWEKVNHPSSYFKVGESVKVKVLGVDDGSGKLA 282
Query: 255 LSIKQLEEDP 264
LS+K+L +P
Sbjct: 283 LSVKRLSTNP 292
>gi|261365785|ref|ZP_05978668.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
gi|288565693|gb|EFC87253.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
Length = 561
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL +H+++++W
Sbjct: 175 -LEATLGEERKALLENLQEGSIIKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D++K R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 273 RRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------L 325
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + V +++ +E+ +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P G+ GLVH+S++SW + ++ +G+EV V+ ID +K RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVDKERISLGIKQLEGD 440
Query: 264 PL 265
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSIIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357
>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 365
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 138 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 186
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 187 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 245
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE
Sbjct: 246 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLE 297
>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
Length = 368
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 165 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 214
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 215 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 271
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 272 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 325
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 326 EPGDMLTDPQKVFEKAEE--MAARYKQML 352
>gi|345430060|ref|YP_004823180.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae T3T1]
gi|301156123|emb|CBW15594.1| 30S ribosomal subunit protein S1 [Haemophilus parainfluenzae T3T1]
Length = 549
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFQNAQGELEVKVGDTVNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIA 271
Query: 270 E 270
E
Sbjct: 272 E 272
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEV 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLE+DP
Sbjct: 391 VHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEDDPF 441
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|422018738|ref|ZP_16365293.1| 30S ribosomal protein S1 [Providencia alcalifaciens Dmel2]
gi|414104332|gb|EKT65899.1| 30S ribosomal protein S1 [Providencia alcalifaciens Dmel2]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +RD
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRD 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E + +
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVRDYKK-- 411
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 412 ----GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ I LS++
Sbjct: 468 VELTLG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|422008081|ref|ZP_16355066.1| 30S ribosomal protein S1 [Providencia rettgeri Dmel1]
gi|414096216|gb|EKT57875.1| 30S ribosomal protein S1 [Providencia rettgeri Dmel1]
Length = 557
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ I LS++
Sbjct: 468 VELTLG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|352094717|ref|ZP_08955888.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351681057|gb|EHA64189.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 433
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 238 WDKVKQLEKEGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQLQDGEN--------HE--- 286
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + V + G + YG F+ L
Sbjct: 287 ALVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEVGQLVEGHVAAIKPYGLFVDL- 345
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R+I ++GD V+ + ++D + RI L+ LE P
Sbjct: 346 -----GGISGLLHQSAITGGSMRSMREIFDQGDAVKALITELDPGRGRIALNTAMLEGQP 400
Query: 265 --LLETLEKVIPQ 275
LL +KV+ +
Sbjct: 401 GELLVDKDKVMAE 413
>gi|329120385|ref|ZP_08249052.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
gi|327462340|gb|EGF08666.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
Length = 559
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 57 GEVEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGLISGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLLDVRPIKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ + DYGAF+ L DGL H+T L +W
Sbjct: 173 -LEATLGEERKALLENLQEGTVVKGVVKNITDYGAFVDLGGIDGLLHITDL------AWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D++K R++L +KQL EDP
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGVKQLGEDP 265
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEI 147
W AR Y ++ GK+ G V + G + +M ++ P K +
Sbjct: 266 WNGLARRYPAGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ-- 322
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGA 199
G V +++ +E+ +++ K W +++ N D G D+G
Sbjct: 323 ----LGDEAEVMILEIDEDRRRISLGMKQCQANPWEDFAANYNKGDKIKGAVKSITDFGV 378
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+ L P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IK
Sbjct: 379 FVGL--PG---NIDGLVHLSDLSWSEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIK 433
Query: 259 QLEEDPL 265
QLE DP
Sbjct: 434 QLEGDPF 440
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 189 QEGTVVKGVVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ +++ +++ K + WN + R G+ DYGAF+ +
Sbjct: 242 AKVLKFDQDKQRVSLGVKQLGEDPWNGLARRYPAGTRLFGKVSNLTDYGAFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDE V +++ID ++ RI+L +KQ + +P
Sbjct: 297 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEAEVMILEIDEDRRRISLGMKQCQANP 352
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G + SE + D ++D+ L EGDEV VI +DR+ I LS+K
Sbjct: 472 EVEGYLPASEFAADRVEDLTTKLKEGDEVEAVVITVDRKNRSIKLSVK 519
>gi|422014951|ref|ZP_16361558.1| 30S ribosomal protein S1 [Providencia burhodogranariea DSM 19968]
gi|414100182|gb|EKT61803.1| 30S ribosomal protein S1 [Providencia burhodogranariea DSM 19968]
Length = 557
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVTGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|422022277|ref|ZP_16368785.1| 30S ribosomal protein S1 [Providencia sneebia DSM 19967]
gi|414096770|gb|EKT58426.1| 30S ribosomal protein S1 [Providencia sneebia DSM 19967]
Length = 557
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVTGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|325578217|ref|ZP_08148352.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
gi|325159953|gb|EGC72082.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
Length = 549
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFQNAQGELEVKVGDTVNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIA 271
Query: 270 E 270
E
Sbjct: 272 E 272
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEV 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLE+DP
Sbjct: 391 VHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEDDPF 441
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
Length = 307
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + KE
Sbjct: 109 WERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIS-TRKAKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 158 DLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFI--- 214
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ ++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 215 ---DIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
Query: 265 LL 266
L
Sbjct: 272 GL 273
>gi|212556777|gb|ACJ29231.1| Ribosomal protein S1 [Shewanella piezotolerans WP3]
Length = 555
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFF 120
TV+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 67 TVHVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELN 125
Query: 121 SLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173
+ FLP P +H KE + + ++ + ++S + + +E +
Sbjct: 126 GIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS-----A 180
Query: 174 EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
E+DA+ +V+ I DYGAF+ L DGL H+T +++W ++ +I
Sbjct: 181 ERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEI 234
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 235 VNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFAERFNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEINAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
Length = 543
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G + G++ + G VR V G +P ++ ++ +KS+ E+
Sbjct: 262 WEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNT----RKSLEEVV 317
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRF 205
G ++ V+VI ++E +KL S K A W R NV ++ G+ G F
Sbjct: 318 S--AGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIEDRYNVNNVVTGKVTGIIKQGAF 375
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSIK+ +E+P
Sbjct: 376 VELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENP 434
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 175 KDAVWNKYSSRVNVEDIFVGRDYG---AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 231
+D ++ S V DI G G A + + +G+ G + SE+S+D D
Sbjct: 172 QDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGV---RGFIPRSELSYDTRISPED 228
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
I+ G + K+I++D+EK + LS+K+L DP E +E+ P G
Sbjct: 229 IVKPGQNITAKIIELDKEKKNVILSLKRLMPDP-WEKVEEKYPVG 272
>gi|384228306|ref|YP_005620041.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539239|gb|AEO08106.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 559
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 38/237 (16%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESGF 101
PV +F NA + V +D + DA +R+ R A W E+
Sbjct: 49 PVEQFK-NAQGVLDINVGDTIDVALDAIEDGFGETLLSREKAKRHEA-WLILEKAHENSE 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G I G GG V + FLP + + +++IH L G + KVI
Sbjct: 107 TVTGIINGKVKGGFTVELNDIRAFLPGSLVD----VRPVRETIH-----LEGKELDFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSR-----------VNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S+ ++V+ + DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSAEREQLLANLQEGIHVKGVVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
H+T +++W ++ +I+N GDE++VK++K DRE++R++L +KQL EDP +
Sbjct: 218 LHIT------DMAWKRVKHPNEIVNVGDEIQVKILKFDRERTRVSLGLKQLGEDPWI 268
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 254
D+G FI L + GLVH+S++SW + ++ + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVKKYKKNDEISAVVLQVDAERERIS 430
Query: 255 LSIKQLEEDPL 265
L IKQLE+DP
Sbjct: 431 LGIKQLEDDPF 441
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAEREQLLANLQEGIHVKGVVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPNE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VK+++ + E ++ K + W S R GR
Sbjct: 234 IVN------VGDEIQVKILKFDRERTRVSLGLKQLGEDPWIAISKRYPESTKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W I + + + V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDWTNKNIHPSKVVSVNDVVEVI-VLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKTNPWKE 356
>gi|82777566|ref|YP_403915.1| 30S ribosomal protein S1 [Shigella dysenteriae Sd197]
gi|309787782|ref|ZP_07682392.1| ribosomal protein S1 [Shigella dysenteriae 1617]
gi|81241714|gb|ABB62424.1| 30S ribosomal subunit protein S1 [Shigella dysenteriae Sd197]
gi|308924181|gb|EFP69678.1| ribosomal protein S1 [Shigella dysenteriae 1617]
Length = 557
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ S+H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDSLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSIGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|386744749|ref|YP_006217928.1| 30S ribosomal protein S1 [Providencia stuartii MRSN 2154]
gi|384481442|gb|AFH95237.1| 30S ribosomal protein S1 [Providencia stuartii MRSN 2154]
Length = 557
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +L GD+V K +DR+ I LS++
Sbjct: 468 VELTLG-----VEGYLRASEASRDRVEDATQVLKVGDDVEAKYTGVDRKNRVINLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|188025797|ref|ZP_02959855.2| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
gi|188020538|gb|EDU58578.1| ribosomal protein S1 [Providencia stuartii ATCC 25827]
Length = 569
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 97 SREKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 152 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGME 206
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 207 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 260
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 261 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKANP 365
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 366 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYK 422
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 423 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGAT 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +L GD+V K +DR+ I LS++
Sbjct: 480 VELTLG-----VEGYLRASEASRDRVEDATQVLKVGDDVEAKYTGVDRKNRVINLSVRAK 534
Query: 261 EE 262
+E
Sbjct: 535 DE 536
>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|59802964|sp|P46228.4|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
Length = 307
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + KE
Sbjct: 109 WERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIS-TRKAKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 158 DLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFI--- 214
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ ++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 215 ---DIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|322437186|ref|YP_004219398.1| 30S ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
gi|321164913|gb|ADW70618.1| ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
Length = 671
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 28/194 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W A S +G + GGL V + FLP Q+ P +++
Sbjct: 182 WDVLEAAANSKTPVKGMVVSRVKGGLTVDI-GIKAFLPGSQIEVR-----PVRNL----D 231
Query: 150 GLTGSIISVKVIQANEEMKKLVFS-----EKDAVWNKYSSRVNVED--IFVGR-----DY 197
G G+ I V+VI+ N++ +V S E+D K + +E+ + G DY
Sbjct: 232 GYVGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLATLEEGSVLTGTVKNLTDY 291
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ L DGL H+T ++SW + RD++N GDE++VKV+K D++K R++L
Sbjct: 292 GAFVDLGGLDGLLHIT------DMSWGRLTHPRDLVNVGDEIQVKVLKFDKDKQRVSLGF 345
Query: 258 KQLEEDPLLETLEK 271
KQL DP L+ E+
Sbjct: 346 KQLTPDPWLDATER 359
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + G ++ G V L G L MS P+ ++ G
Sbjct: 273 ATLEEGSVLTGTVKNLTDYGAFVDLGGLDGLLHITDMSWGR-LTHPRDLVN------VGD 325
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
I VKV++ +++ +++ K W + R + GR DYGAF+ L
Sbjct: 326 EIQVKVLKFDKDKQRVSLGFKQLTPDPWLDATERYPIGAQVRGRVLSVTDYGAFVELE-- 383
Query: 207 DGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVHVSE++W ++ ++ GDEV ++ ++ RI+L +KQL+++P
Sbjct: 384 ---QGIEGLVHVSEMTWSKRMKHPSKLVKPGDEVDTIILSVNPNDRRISLGMKQLQDNP- 439
Query: 266 LETLEKVIPQG 276
E LE P G
Sbjct: 440 WEALEDKYPTG 450
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+A +G I EG+++ G + + G + +S + K P + +
Sbjct: 440 WEALEDKYPTGAIIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLK--- 496
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 203
KG I + V N + V + VW+ + ++ + D+ G+ +GAF+ +
Sbjct: 497 KGEKVRAIVLGVEPENRRLSLGVKQLQPDVWDTFFAQHRIGDVIKGKVLRTAQFGAFVEI 556
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL HVSE + + L DE K++K+++E+ ++ LSI+ + E+
Sbjct: 557 -----AEGVEGLCHVSEAVDATGKPVE--LKVDDEHEFKIVKMNQEEKKVGLSIRAVGEE 609
>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9211]
Length = 371
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 168 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 217
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 218 --LVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDI 275
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 276 ------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 329
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 330 PGDMLSDPQKVFDKAEE--MAAKYKEML 355
>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
Length = 367
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 30/209 (14%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHEI 147
W+ R KE IY ++ N GG LVR L GF+P SH S ++P++
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIP-----GSHISTRKPKEE---- 213
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 214 ---LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFID 270
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE
Sbjct: 271 I------GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEP 324
Query: 263 DP--LLETLEKVIPQGLEPYLKSFYKKMV 289
+P +L +KV + E + + YK+M+
Sbjct: 325 EPGDMLTDPQKVFEKAEE--MAARYKQML 351
>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
Length = 558
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHS 136
+RQ ++ K + ++E G I GK++ GGL++ + FLP Q+ P +
Sbjct: 76 SRQKAAQKQNWDKILKTFEEGGTIT-GKVKQVVKGGLMLNI-GVEAFLPASQIDVVPPKN 133
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVNVE 189
KE + G+ ++ K+++ +EE K +V S ++ V ++ +V+V
Sbjct: 134 LKEYE-----------GATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEKVHVG 182
Query: 190 DIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
D+ G D+GAFI L DG+ GL+H++++SW I +IL G E+ V VI
Sbjct: 183 DLVKGVVKNVTDFGAFIDL---DGI---DGLIHITDMSWGRINHPSEILKVGQEIEVVVI 236
Query: 245 KIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+DREK R++L +KQ +P E +E+ P G
Sbjct: 237 DVDREKERVSLGLKQKTPNP-WENIEEKYPVG 267
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G I +GK++ F+ G + +L GF+ +S + P + + +
Sbjct: 344 WDKASELYPPGTIVKGKVKNFSAYGAYIELENALDGFIHVNDLSWTRKINHPSEVLKK-- 401
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G I KV++ ++ +K++ K W + + V +I G+ +GAF
Sbjct: 402 ----GEEIEAKVLEIDKTNQKILLGIKQLTEDPWKEIEKKYKVGEIVSGKVSKIASFGAF 457
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
I L + GLVH+S++S D + ++D+L G EV ++IKID+E+ RI LSIK L
Sbjct: 458 IQL-----ADEIDGLVHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKAL 512
Query: 261 EEDPLLETLEK 271
P E LEK
Sbjct: 513 HYTP--EQLEK 521
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI L + GLVH+SE+SW I ++L+ G EV V+ I++ + +++L
Sbjct: 280 YGAFIELE-----PGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSL 334
Query: 256 SIKQLEEDP 264
S+K LE +P
Sbjct: 335 SLKALEVNP 343
>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9313]
Length = 421
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 226 WSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGEN--------HEA-- 275
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + V + G + YG FI L
Sbjct: 276 -LIGKTLGVAFLEVNPETRKLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFFIDL- 333
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R++ N+GD V+ + ++D + RI L+ LE P
Sbjct: 334 -----GGVSGLLHQSMITGGSLRSLREVFNQGDRVKALITEMDPGRGRIALNTALLEGQP 388
>gi|406962347|gb|EKD88743.1| RNA-binding S1 protein [uncultured bacterium]
Length = 316
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 24/212 (11%)
Query: 68 NPILDDSSDANNRQSQSRSSA---DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVG 124
+ I+ + +D N+R +Q+ S +W+ + + E ++ GFN GGLLV+ + G
Sbjct: 30 DAIVSEKADTNSRNNQTNFSGGCTNWENVKNIFLRDEVIELEVYGFNRGGLLVKGEGIQG 89
Query: 125 FLPFPQMS--PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182
F+P + P S + ++ ++AK GS + +KVI+ +++V SE+ A +
Sbjct: 90 FVPVSHLVDLPGESSDDERQ--EQLAK-YEGSSLWLKVIECEPASERVVLSERAAQAGEG 146
Query: 183 SSRVNVEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
++ E + G D+G F+ L + GLVHVSE+SW ++ +
Sbjct: 147 KRKLLFESLKPGLHTTGLVTNVTDFGVFVDLG------GVEGLVHVSELSWGRVEQPSAL 200
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
G V V V++++ +RI LSIK+L E+P
Sbjct: 201 FTIGQSVDVMVLQVNESTARIALSIKRLTENP 232
>gi|354555643|ref|ZP_08974943.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|353552293|gb|EHC21689.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 336
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLE 268
>gi|422332269|ref|ZP_16413283.1| 30S ribosomal protein S1 [Escherichia coli 4_1_47FAA]
gi|373246818|gb|EHP66268.1| 30S ribosomal protein S1 [Escherichia coli 4_1_47FAA]
Length = 326
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
Length = 359
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 132 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 180
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 181 DLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 239
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE
Sbjct: 240 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLE 291
>gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 401
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 206 WDKVKQLEKDGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQLQDGEN--------HET-- 255
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + + + G + YG F+ L
Sbjct: 256 -LVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEIGQLVEGHVAAIKPYGLFVDL- 313
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R+I ++GD V+ + ++D + RI L+ LE P
Sbjct: 314 -----GGISGLLHQSAITGGSMRSMREIFDQGDAVKALITELDPGRGRIALNTAMLEGQP 368
Query: 265 --LLETLEKVIPQ 275
LL +KV+ +
Sbjct: 369 GELLVEKDKVMAE 381
>gi|428776647|ref|YP_007168434.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428690926|gb|AFZ44220.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 394
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRQPKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + S + V ++ +G + YGAFI +
Sbjct: 160 -LVAQDLPLKFLEVDEERNRLVLSHRRALVERKMSGLKVGEVVIGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + + DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPSSVFDINDELKVMIIDLDAERGRISLSTKQLE 269
>gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
gi|149752742|gb|EDM62673.1| S1 RNA binding domain protein [Dorea longicatena DSM 13814]
Length = 269
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 38/210 (18%)
Query: 63 TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSL 122
TP T+ + + DAN W ++Y E G + K++G GG + L
Sbjct: 52 TPVTMADLEEHFDDAN----------PWNVVKSYMEKGTVLPVKVEGIVNGGAIAMVEGL 101
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182
GF+P ++S S+ I ++ L I VKVI +E +LV S ++ + K
Sbjct: 102 RGFIPASRLSLSY--------IEDLETYLLKDI-EVKVIDVDEANNRLVLSAREILQEKA 152
Query: 183 S-------SRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
+ V V I G ++YGAF+ L DGL +GLVH+S++S I+
Sbjct: 153 RKEREAKIAAVKVGSIVTGTVESLQNYGAFVDL--GDGL---SGLVHISQISLKRIKSPA 207
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQL 260
D+LN GDEV VK+I I + +I+LS+K L
Sbjct: 208 DVLNVGDEVTVKIIGI--KDGKISLSMKAL 235
>gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T]
gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T]
Length = 567
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ N ++ + D + + +++ A W G + +G I G
Sbjct: 65 GELEANIGDFVHVAIDALEDGYGETRLSRDKAKRIAAWNDLEKALNEGTLVKGVITGRVK 124
Query: 113 GGLLVRFFSLVGFLP--FPQMSP-----SHSCKEPQKSIHEIAKGLTGSIISVKVI---Q 162
GGL V S+ FLP M P + KE + + ++ + ++S + +
Sbjct: 125 GGLTVMTNSIRAFLPGSLVDMRPVKDTTPYEGKEYEFKVIKLDRKRNNVVVSRRAVLEES 184
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE +KL+ + K+ K V++I DYGAF+ L DGL H+T L +
Sbjct: 185 MGEEREKLLANLKEGTVIKGV----VKNI---TDYGAFVDLGGIDGLLHITDL------A 231
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++L+ GDE+ KV+K D+EK+R++L +KQL EDP + + + PQG + K
Sbjct: 232 WRRVRHPSEVLSVGDEIEAKVLKFDQEKNRVSLGLKQLGEDPWV-GISRRYPQGTRLFGK 290
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 321 KNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIKS 380
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L + GLVH+S++SW + +D +GDEV V+ ID E+ R
Sbjct: 381 ITDFGVFIGLEGG-----IDGLVHLSDLSWSESGEDAVRRFKKGDEVEAVVLAIDVERER 435
Query: 253 ITLSIKQLEEDP 264
I+L IKQLE DP
Sbjct: 436 ISLGIKQLEGDP 447
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 296 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 349
Query: 254 TLSIKQLEEDP 264
+L +KQ +P
Sbjct: 350 SLGMKQCMSNP 360
>gi|432826402|ref|ZP_20060057.1| 30S ribosomal protein S1 [Escherichia coli KTE123]
gi|431374186|gb|ELG59781.1| 30S ribosomal protein S1 [Escherichia coli KTE123]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLSEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLSEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|388257223|ref|ZP_10134403.1| 30S ribosomal protein S1 [Cellvibrio sp. BR]
gi|387939427|gb|EIK45978.1| 30S ribosomal protein S1 [Cellvibrio sp. BR]
Length = 559
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + +G I G GG V + FLP + +
Sbjct: 85 SREKAKRAEA-WKILEAAHVAEEVIKGVINGKVKGGFTVDVAGIRAFLPGSLV----DVR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+++ H L G + KVI+ +++ +V S E+D +
Sbjct: 140 PVRETTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVLEQANSVERDELLATLQEGQA 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPGEIVNVGDEIDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP ++ + K P+G
Sbjct: 249 DRERNRVSLGLKQLGEDPWIQ-ITKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K + G I V V+ +EE +++ K + W+
Sbjct: 302 GLIHVSEMDWTNKNIHPSKVVQ------LGDEIEVMVLDIDEERRRISLGLKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++ D G+ D+G FI L DG + GLVH+S++SW + ++
Sbjct: 356 AFARTCAKGDKISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWHEAGEEAVRKYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ V+ ID E+ RI+L IKQLE DP E
Sbjct: 411 KGDELETVVLAIDPERERISLGIKQLETDPFSE 443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A + G +G ++ G V + G L M+ K P + ++ G
Sbjct: 187 ATLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPGEIVN------VGD 239
Query: 155 IISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLRFP 206
I VKV++ + E ++ K + +Y V+ DYG F L
Sbjct: 240 EIDVKVLKFDRERNRVSLGLKQLGEDPWIQITKRYPEGARVKAKVTNLTDYGCFAELE-- 297
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+ W ++I ++ GDE+ V V+ ID E+ RI+L +KQ +E+P
Sbjct: 298 ---EGVEGLIHVSEMDW-TNKNIHPSKVVQLGDEIEVMVLDIDEERRRISLGLKQCQENP 353
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ ++ SE+S + ++D R++L GDEV K+I +DR+ I+LS+K
Sbjct: 474 VEAVLKASELSREKVEDARNLLKVGDEVEAKIIAVDRKNRSISLSVK 520
>gi|428780280|ref|YP_007172066.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428694559|gb|AFZ50709.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 398
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 110 WERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHIS----TRQPKED------ 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L + +K ++ +EE +LV S + A+ + S + V ++ +G + YGAFI +
Sbjct: 160 -LVAQDLPLKFLEVDEERNRLVLSHRRALVERKMSGLKVGEVVIGSVRGIKPYGAFIDI- 217
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + + DE++V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GGVSGLLHISEISHDHIDTPSSVFDINDELKVMIIDLDAERGRISLSTKQLE 269
>gi|416402894|ref|ZP_11687458.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
gi|357261819|gb|EHJ11043.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
Length = 358
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 122 WERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 170
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 171 DLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 229
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE
Sbjct: 230 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLE 281
>gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4]
gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4]
Length = 449
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHS 136
+RQ ++ K + ++E G I GK++ GGL++ + FLP Q+ P +
Sbjct: 76 SRQKAAQKQNWDKILKTFEEGGTIT-GKVKQVVKGGLMLNI-GVEAFLPASQIDIVPPKN 133
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVNVE 189
KE + G+ ++ K+++ +EE K +V S ++ V ++ +V+V
Sbjct: 134 LKEYE-----------GATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEKVHVG 182
Query: 190 DIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
D+ G D+GAFI L DG+ GL+H++++SW I +IL G E+ V VI
Sbjct: 183 DLVKGVVKNVTDFGAFIDL---DGI---DGLIHITDMSWGRINHPSEILKVGQEIEVVVI 236
Query: 245 KIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+DREK R++L +KQ +P E +E+ P G
Sbjct: 237 DVDREKERVSLGLKQKTPNP-WENIEEKYPIG 267
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V+ N+E +KL S K W K S + G+ YGA++ L
Sbjct: 315 GQEVEAIVLDLNKEEQKLSLSLKALEVNPWEKASETYPPGSLIKGKVKNFSAYGAYVELE 374
Query: 205 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
L G +HV+++SW I ++L +G+++ KV++ID+ +I L IKQL ED
Sbjct: 375 -----NGLDGFIHVNDLSWTRKINHPSEVLKKGEQIEAKVLEIDKTNQKILLGIKQLTED 429
Query: 264 PLLETLEK 271
P E +K
Sbjct: 430 PWKEIEKK 437
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI L + GL+H+SE+SW I ++L+ G EV V+ +++E+ +++L
Sbjct: 280 YGAFIELE-----PGIEGLIHISEISWTQKITKPSEVLSMGQEVEAIVLDLNKEEQKLSL 334
Query: 256 SIKQLEEDPLLETLEKVIPQGL 277
S+K LE +P + E P L
Sbjct: 335 SLKALEVNPWEKASETYPPGSL 356
>gi|325110553|ref|YP_004271621.1| RNA binding S1 domain-containing protein [Planctomyces brasiliensis
DSM 5305]
gi|324970821|gb|ADY61599.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
Length = 556
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 33/197 (16%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK-E 139
+S R+S DW G + E +Q N GGL ++ L GF+P Q+ E
Sbjct: 244 RSAHRASGDWDTLTV----GQVVECNVQKTNKGGLEIQVGQLRGFMPAGQVDMYFVGDLE 299
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-------VEDIF 192
P G ++ +VI N + + LV S K + + ++ V D
Sbjct: 300 P----------FVGQKLTARVIDVNPKKRNLVVSRKALLQEERAAAEAEAWQELAVGDQR 349
Query: 193 VG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
G +DYGAF+ + DGL +HV E+SW + D+L EG +V VKV+ ID
Sbjct: 350 TGTVKTIKDYGAFVDIGGVDGL------LHVRELSWTRVNHPSDVLQEGQQVEVKVLSID 403
Query: 248 REKSRITLSIKQLEEDP 264
+EK +I+L +KQL +P
Sbjct: 404 QEKKKISLGMKQLMTNP 420
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G + VKV+ ++E KK+ K + W+ R + G D+GAF+ +
Sbjct: 392 GQQVEVKVLSIDQEKKKISLGMKQLMTNPWDYAEQRYPKNTVVTGLVKKTTDFGAFVEIE 451
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L GL+H+SE+ + + + D+L EG E +V++I++ K RI+LS+K ++ P
Sbjct: 452 -----PGLEGLIHISELDFRRVNRVEDVLTEGQETEAQVLEINKNKKRISLSLKSIKPKP 506
>gi|398791228|ref|ZP_10551973.1| ribosomal protein S1 [Pantoea sp. YR343]
gi|398215282|gb|EJN01845.1| ribosomal protein S1 [Pantoea sp. YR343]
Length = 566
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 93 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 147
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 148 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 202
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 203 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 256
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 257 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 285
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 362 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 416
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 417 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 449
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 183 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 241
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 242 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 295
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 296 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 349
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 350 ISLGLKQCKSNP 361
>gi|404401713|ref|ZP_10993297.1| 30S ribosomal protein S1 [Pseudomonas fuscovaginae UPB0736]
Length = 561
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F T+A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYTDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE--KVIPQG 276
SE+S D ++D R++L EG+EV K+I +DR+ I LSIK + + E ++ K P+G
Sbjct: 483 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDVEDEKEAIQSLKAAPEG 542
>gi|398798463|ref|ZP_10557762.1| ribosomal protein S1 [Pantoea sp. GM01]
gi|398100370|gb|EJL90609.1| ribosomal protein S1 [Pantoea sp. GM01]
Length = 566
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 93 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 147
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 148 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 202
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 203 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 256
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 257 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 285
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 362 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 416
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 417 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 449
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 183 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 241
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 242 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 295
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 296 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 349
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 350 ISLGLKQCKSNP 361
>gi|422621831|ref|ZP_16690295.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330945249|gb|EGH46912.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
Length = 355
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 27 LIPLEQFHNDAGELTIKIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 86
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 87 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 137
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 138 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 197
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 198 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWV 248
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 155 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 213
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 214 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 266
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 267 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 320
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 321 RISLGIKQCKSNP 333
>gi|259908919|ref|YP_002649275.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
gi|385787907|ref|YP_005819016.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
gi|387871827|ref|YP_005803202.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
gi|224964541|emb|CAX56051.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
gi|283478915|emb|CAY74831.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
gi|310767179|gb|ADP12129.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 23/199 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVNGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEKVIPQG 276
Q +E + T+ +G
Sbjct: 523 DQADEKEAINTVNTKQEEG 541
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 345
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 109 WERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHIS-----------TREAKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + +G + YGAFI +
Sbjct: 158 DLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+SE+S D I + DE++V +I +D E+ RI+LS KQLE
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQLE 268
>gi|398899119|ref|ZP_10648807.1| ribosomal protein S1 [Pseudomonas sp. GM50]
gi|398183210|gb|EJM70704.1| ribosomal protein S1 [Pseudomonas sp. GM50]
Length = 563
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|421421477|ref|ZP_15871145.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396040792|gb|EJI49415.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|302061501|ref|ZP_07253042.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato K40]
Length = 553
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 39 LIPLEQFHNDAGELTIKIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 98
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 99 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 149
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 150 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 209
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 210 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 258
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 294 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 347
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 348 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 402
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 403 KGDELDTVILSVDPERERISLGIKQLESDPFSE 435
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 167 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 225
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 226 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 278
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 279 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 332
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 333 RISLGIKQCKSNP 345
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 473 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 512
>gi|421883094|ref|ZP_16314339.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379987370|emb|CCF86612.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVDGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|331656982|ref|ZP_08357944.1| ribosomal protein S1 [Escherichia coli TA206]
gi|331055230|gb|EGI27239.1| ribosomal protein S1 [Escherichia coli TA206]
Length = 366
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEKVIPQGLEP 279
I+L +KQ + +P + E PQ P
Sbjct: 342 ISLGLKQCKANPWQQFAE---PQQGRP 365
>gi|188534269|ref|YP_001908066.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
gi|188029311|emb|CAO97188.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 23/199 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVNGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--GDGV---EGYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEKVIPQG 276
Q +E + T+ +G
Sbjct: 523 DQADEKEAINTVNTKQEEG 541
>gi|436592333|ref|ZP_20512182.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434978598|gb|ELL70615.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
Length = 467
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|409249392|ref|YP_006885222.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|417499090|ref|ZP_12173579.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|320085220|emb|CBY95006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|353653885|gb|EHC95306.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16764341|ref|NP_459956.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142376|ref|NP_805718.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413969|ref|YP_151044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62179505|ref|YP_215922.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161614783|ref|YP_001588748.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168263527|ref|ZP_02685500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168466572|ref|ZP_02700434.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194444412|ref|YP_002040179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194451518|ref|YP_002044973.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194468516|ref|ZP_03074500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194734164|ref|YP_002114032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197251361|ref|YP_002145899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197261950|ref|ZP_03162024.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197362892|ref|YP_002142529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198243294|ref|YP_002214905.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390727|ref|ZP_03217338.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204929888|ref|ZP_03220909.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205352188|ref|YP_002225989.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856372|ref|YP_002243023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213161607|ref|ZP_03347317.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424598|ref|ZP_03357381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213609752|ref|ZP_03369578.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213852007|ref|ZP_03381539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224582790|ref|YP_002636588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913246|ref|ZP_04657083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289825856|ref|ZP_06545024.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|374981648|ref|ZP_09722972.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375000692|ref|ZP_09725032.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375113828|ref|ZP_09758998.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375118391|ref|ZP_09763558.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375122982|ref|ZP_09768146.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378444418|ref|YP_005232050.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378449341|ref|YP_005236700.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698876|ref|YP_005180833.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378960118|ref|YP_005217604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|378983539|ref|YP_005246694.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378988325|ref|YP_005251489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379700147|ref|YP_005241875.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383495720|ref|YP_005396409.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386590846|ref|YP_006087246.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|416421984|ref|ZP_11689888.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416431501|ref|ZP_11695655.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416441519|ref|ZP_11701731.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416443807|ref|ZP_11703283.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416452583|ref|ZP_11709078.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416459225|ref|ZP_11713734.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416467500|ref|ZP_11717412.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416477644|ref|ZP_11721529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416490841|ref|ZP_11726800.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416500331|ref|ZP_11731402.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416505309|ref|ZP_11733743.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416523292|ref|ZP_11740969.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416528875|ref|ZP_11744099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416535883|ref|ZP_11748077.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416545689|ref|ZP_11753483.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416551252|ref|ZP_11756425.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416559954|ref|ZP_11760919.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416571986|ref|ZP_11767069.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416578379|ref|ZP_11770499.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416582317|ref|ZP_11772591.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416593628|ref|ZP_11780034.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599355|ref|ZP_11783589.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416604857|ref|ZP_11786478.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416612505|ref|ZP_11791530.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618297|ref|ZP_11794540.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416628278|ref|ZP_11799491.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416641208|ref|ZP_11805355.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416650208|ref|ZP_11810316.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416658799|ref|ZP_11814492.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416666192|ref|ZP_11817343.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416682825|ref|ZP_11824072.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692586|ref|ZP_11826462.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416707438|ref|ZP_11832536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714736|ref|ZP_11838054.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416716514|ref|ZP_11838861.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416725419|ref|ZP_11845789.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416728234|ref|ZP_11847507.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416738785|ref|ZP_11853543.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416751794|ref|ZP_11860254.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759252|ref|ZP_11864137.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416760940|ref|ZP_11865148.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770547|ref|ZP_11871886.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417325408|ref|ZP_12111380.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417332734|ref|ZP_12116520.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|417340517|ref|ZP_12121813.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417348070|ref|ZP_12127115.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417356919|ref|ZP_12132345.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417364627|ref|ZP_12137497.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417372405|ref|ZP_12142706.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417389799|ref|ZP_12153477.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417414510|ref|ZP_12158415.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|417456065|ref|ZP_12163575.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417474054|ref|ZP_12169272.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417517412|ref|ZP_12180001.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417528959|ref|ZP_12185130.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|417538226|ref|ZP_12190883.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|418484308|ref|ZP_13053307.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418490855|ref|ZP_13057390.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495226|ref|ZP_13061668.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418500140|ref|ZP_13066539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418501962|ref|ZP_13068338.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418509779|ref|ZP_13076071.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418510816|ref|ZP_13077090.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418526800|ref|ZP_13092769.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418761649|ref|ZP_13317789.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418768219|ref|ZP_13324274.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418769371|ref|ZP_13325401.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777533|ref|ZP_13333461.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418779234|ref|ZP_13335138.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418787029|ref|ZP_13342836.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418789578|ref|ZP_13345364.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418795918|ref|ZP_13351616.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418798171|ref|ZP_13353848.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418805057|ref|ZP_13360650.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418808460|ref|ZP_13364015.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418812617|ref|ZP_13368140.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418814731|ref|ZP_13370243.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418819191|ref|ZP_13374645.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418833469|ref|ZP_13388393.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837751|ref|ZP_13392621.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841059|ref|ZP_13395881.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418846277|ref|ZP_13401049.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418848382|ref|ZP_13403121.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418852427|ref|ZP_13407127.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418856933|ref|ZP_13411567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418863818|ref|ZP_13418355.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418868956|ref|ZP_13423397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419728212|ref|ZP_14255179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419733096|ref|ZP_14259998.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419739229|ref|ZP_14265980.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419744209|ref|ZP_14270866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748112|ref|ZP_14274612.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419788185|ref|ZP_14313878.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795608|ref|ZP_14321202.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421358404|ref|ZP_15808701.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362375|ref|ZP_15812627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421367574|ref|ZP_15817767.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374061|ref|ZP_15824194.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378246|ref|ZP_15828335.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382853|ref|ZP_15832899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387418|ref|ZP_15837417.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391522|ref|ZP_15841488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421395274|ref|ZP_15845213.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421401540|ref|ZP_15851416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402859|ref|ZP_15852713.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421410225|ref|ZP_15860006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412492|ref|ZP_15862246.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416484|ref|ZP_15866203.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421425346|ref|ZP_15874982.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432217|ref|ZP_15881794.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421434470|ref|ZP_15884019.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421438938|ref|ZP_15888432.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421446495|ref|ZP_15895907.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447401|ref|ZP_15896802.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421571959|ref|ZP_16017624.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421576179|ref|ZP_16021783.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421585843|ref|ZP_16031332.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422025092|ref|ZP_16371552.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422030663|ref|ZP_16376857.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427547642|ref|ZP_18926865.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427565000|ref|ZP_18932078.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427585073|ref|ZP_18936892.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427607498|ref|ZP_18941721.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427630159|ref|ZP_18946127.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427652851|ref|ZP_18950880.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427660827|ref|ZP_18956307.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427667161|ref|ZP_18961112.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427746182|ref|ZP_18965627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436793644|ref|ZP_20521807.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436811641|ref|ZP_20530521.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436816012|ref|ZP_20533563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436839160|ref|ZP_20537480.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436851607|ref|ZP_20542206.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436858369|ref|ZP_20546889.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436865545|ref|ZP_20551512.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436875280|ref|ZP_20557187.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883594|ref|ZP_20562023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436887545|ref|ZP_20563874.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436896665|ref|ZP_20569421.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436906643|ref|ZP_20575489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436911406|ref|ZP_20577235.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436920880|ref|ZP_20583351.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436930734|ref|ZP_20588959.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436935358|ref|ZP_20590798.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436942547|ref|ZP_20595493.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436951958|ref|ZP_20601013.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436964331|ref|ZP_20605967.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436974363|ref|ZP_20611032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436986554|ref|ZP_20615444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436990299|ref|ZP_20616866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437012513|ref|ZP_20625026.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437020514|ref|ZP_20627325.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437032108|ref|ZP_20631752.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437044953|ref|ZP_20637500.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052667|ref|ZP_20642090.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437057877|ref|ZP_20644724.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437065632|ref|ZP_20649223.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437075570|ref|ZP_20653933.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437086865|ref|ZP_20660874.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437090786|ref|ZP_20662894.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437113402|ref|ZP_20668722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437126212|ref|ZP_20674481.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437134290|ref|ZP_20678714.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437141091|ref|ZP_20682935.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437142890|ref|ZP_20683929.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437155615|ref|ZP_20691834.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161549|ref|ZP_20695485.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437171469|ref|ZP_20700573.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437177558|ref|ZP_20704038.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437183973|ref|ZP_20707988.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437241104|ref|ZP_20714400.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437260935|ref|ZP_20718005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437268979|ref|ZP_20722264.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281764|ref|ZP_20728765.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437300266|ref|ZP_20733030.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307839|ref|ZP_20735044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437321480|ref|ZP_20738708.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437336410|ref|ZP_20743017.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437404006|ref|ZP_20751965.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437443668|ref|ZP_20758054.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437461562|ref|ZP_20762482.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437478743|ref|ZP_20767756.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437491871|ref|ZP_20771515.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437506565|ref|ZP_20775848.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437541465|ref|ZP_20782509.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437563751|ref|ZP_20786897.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437575435|ref|ZP_20790231.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437593373|ref|ZP_20795390.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437600262|ref|ZP_20797226.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437613485|ref|ZP_20801563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437640518|ref|ZP_20807764.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437659032|ref|ZP_20811959.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437682527|ref|ZP_20818645.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437693083|ref|ZP_20821334.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437715442|ref|ZP_20827964.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437730693|ref|ZP_20831240.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437813493|ref|ZP_20841872.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437832225|ref|ZP_20844358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437925829|ref|ZP_20850907.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437970924|ref|ZP_20852809.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438084628|ref|ZP_20858396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438104114|ref|ZP_20865818.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438112673|ref|ZP_20869270.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438146086|ref|ZP_20875909.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440764452|ref|ZP_20943480.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440769400|ref|ZP_20948358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440770875|ref|ZP_20949803.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445134814|ref|ZP_21383049.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141620|ref|ZP_21385561.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445153473|ref|ZP_21391397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445177969|ref|ZP_21397866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445195981|ref|ZP_21400530.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445224787|ref|ZP_21403576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445263334|ref|ZP_21409924.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445331317|ref|ZP_21414157.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445346809|ref|ZP_21418942.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445365105|ref|ZP_21425095.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452120856|ref|YP_007471104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|25294435|pir||AC0614 30S ribosomal protein S1 [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16419493|gb|AAL19915.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16502144|emb|CAD05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138006|gb|AAO69567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128226|gb|AAV77732.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62127138|gb|AAX64841.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161364147|gb|ABX67915.1| hypothetical protein SPAB_02535 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403075|gb|ACF63297.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194409822|gb|ACF70041.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194454880|gb|EDX43719.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194709666|gb|ACF88887.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195631046|gb|EDX49632.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197094369|emb|CAR59882.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197215064|gb|ACH52461.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197240205|gb|EDY22825.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197937810|gb|ACH75143.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603172|gb|EDZ01718.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204320882|gb|EDZ06083.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205271969|emb|CAR36813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205347781|gb|EDZ34412.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206708175|emb|CAR32468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467317|gb|ACN45147.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261246197|emb|CBG24001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992719|gb|ACY87604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157524|emb|CBW17014.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911967|dbj|BAJ35941.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223304|gb|EFX48373.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616411|gb|EFY13320.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322619661|gb|EFY16536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622643|gb|EFY19488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629792|gb|EFY26567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632486|gb|EFY29232.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637019|gb|EFY33722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641441|gb|EFY38079.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646093|gb|EFY42609.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649605|gb|EFY46036.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654093|gb|EFY50416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658625|gb|EFY54887.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663482|gb|EFY59684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670218|gb|EFY66358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671454|gb|EFY67576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676810|gb|EFY72877.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682735|gb|EFY78754.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686414|gb|EFY82396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322713974|gb|EFZ05545.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323129246|gb|ADX16676.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323195937|gb|EFZ81104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199775|gb|EFZ84864.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202768|gb|EFZ87804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211515|gb|EFZ96354.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218000|gb|EGA02715.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219927|gb|EGA04403.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226705|gb|EGA10901.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229802|gb|EGA13925.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233027|gb|EGA17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240762|gb|EGA24804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243078|gb|EGA27099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249759|gb|EGA33661.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252768|gb|EGA36606.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323254794|gb|EGA38595.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260005|gb|EGA43633.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267994|gb|EGA51473.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269841|gb|EGA53290.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326622658|gb|EGE29003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326627232|gb|EGE33575.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332987872|gb|AEF06855.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|353075380|gb|EHB41140.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353576107|gb|EHC38660.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353576632|gb|EHC39033.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353580808|gb|EHC41940.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|353594781|gb|EHC52193.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353596602|gb|EHC53550.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353605368|gb|EHC59898.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353620721|gb|EHC70752.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625575|gb|EHC74337.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353634534|gb|EHC81083.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353648858|gb|EHC91643.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353651764|gb|EHC93774.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353666962|gb|EHD04612.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353667772|gb|EHD05187.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|357959022|gb|EHJ83424.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|363550028|gb|EHL34357.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363553147|gb|EHL37411.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363556243|gb|EHL40458.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363565462|gb|EHL49495.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363567102|gb|EHL51109.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363573542|gb|EHL57421.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363575377|gb|EHL59230.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366058888|gb|EHN23167.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366059082|gb|EHN23356.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366064405|gb|EHN28603.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366069607|gb|EHN33730.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366076409|gb|EHN40447.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366077874|gb|EHN41883.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366085361|gb|EHN49247.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366828391|gb|EHN55278.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372205408|gb|EHP18923.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|374353990|gb|AEZ45751.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|380462541|gb|AFD57944.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|381299747|gb|EIC40816.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381300362|gb|EIC41425.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381301768|gb|EIC42822.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381309314|gb|EIC50151.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381315550|gb|EIC56311.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383797890|gb|AFH44972.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|392612493|gb|EIW94970.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618152|gb|EIX00563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732148|gb|EIZ89360.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392739385|gb|EIZ96519.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392739667|gb|EIZ96799.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743736|gb|EJA00803.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392746312|gb|EJA03327.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753701|gb|EJA10627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392757808|gb|EJA14691.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392759923|gb|EJA16763.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392766828|gb|EJA23600.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392768559|gb|EJA25311.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392776037|gb|EJA32727.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392776648|gb|EJA33335.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392793923|gb|EJA50357.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392795283|gb|EJA51659.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392795507|gb|EJA51875.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392798109|gb|EJA54396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392809193|gb|EJA65231.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392810563|gb|EJA66576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392823694|gb|EJA79490.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392829250|gb|EJA84929.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392832291|gb|EJA87913.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392835558|gb|EJA91151.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392837646|gb|EJA93216.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|395986094|gb|EJH95258.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395986844|gb|EJH96007.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990199|gb|EJH99330.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395994675|gb|EJI03745.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395997551|gb|EJI06592.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|395997961|gb|EJI07001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396008243|gb|EJI17177.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396010485|gb|EJI19397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396014011|gb|EJI22898.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396021605|gb|EJI30431.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396022358|gb|EJI31171.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396029890|gb|EJI38625.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396039580|gb|EJI48204.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044661|gb|EJI53256.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396051468|gb|EJI59986.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396057816|gb|EJI66286.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396060221|gb|EJI68667.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396062077|gb|EJI70490.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396072166|gb|EJI80481.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074964|gb|EJI83243.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402518813|gb|EJW26183.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402519635|gb|EJW26996.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402529251|gb|EJW36489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414021863|gb|EKT05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414022053|gb|EKT05555.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414022191|gb|EKT05684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414034204|gb|EKT17138.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414035550|gb|EKT18416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414039093|gb|EKT21781.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414050647|gb|EKT32814.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414051654|gb|EKT33742.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414054400|gb|EKT36349.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414060176|gb|EKT41698.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414066576|gb|EKT47114.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434938717|gb|ELL45646.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434963278|gb|ELL56396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434964272|gb|ELL57294.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434974128|gb|ELL66516.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434980468|gb|ELL72389.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434986909|gb|ELL78560.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434990521|gb|ELL82071.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994871|gb|ELL86188.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|434996580|gb|ELL87896.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435002039|gb|ELL93128.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435009255|gb|ELM00041.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435015220|gb|ELM05777.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435016554|gb|ELM07080.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025651|gb|ELM15782.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435027002|gb|ELM17131.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435032389|gb|ELM22333.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435038196|gb|ELM27977.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435042746|gb|ELM32463.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435048188|gb|ELM37753.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435052425|gb|ELM41927.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435052878|gb|ELM42352.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435061316|gb|ELM50544.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063833|gb|ELM52981.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435070456|gb|ELM59440.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435079142|gb|ELM67853.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435080044|gb|ELM68737.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435080772|gb|ELM69440.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435091267|gb|ELM79668.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435093690|gb|ELM82029.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099307|gb|ELM87515.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435103011|gb|ELM91114.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435104867|gb|ELM92904.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435113820|gb|ELN01652.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435116366|gb|ELN04104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435117293|gb|ELN05005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435119769|gb|ELN07371.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435128795|gb|ELN16121.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138483|gb|ELN25510.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435141792|gb|ELN28723.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435144606|gb|ELN31438.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435145991|gb|ELN32785.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435155238|gb|ELN41796.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435162031|gb|ELN48237.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435163391|gb|ELN49527.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435168382|gb|ELN54214.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435172629|gb|ELN58156.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435178669|gb|ELN63866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435179107|gb|ELN64265.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435186353|gb|ELN71195.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435196670|gb|ELN81001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435197479|gb|ELN81762.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435205705|gb|ELN89287.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210854|gb|ELN94083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435219985|gb|ELO02303.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435221562|gb|ELO03835.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228976|gb|ELO10372.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435234756|gb|ELO15610.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435236381|gb|ELO17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435236762|gb|ELO17482.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245400|gb|ELO25487.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252372|gb|ELO31933.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262538|gb|ELO41627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435264420|gb|ELO43337.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435269784|gb|ELO48301.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435270084|gb|ELO48588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435276821|gb|ELO54813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435279458|gb|ELO57233.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285069|gb|ELO62475.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435289314|gb|ELO66288.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435296548|gb|ELO72924.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435302833|gb|ELO78761.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435312934|gb|ELO86737.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435319644|gb|ELO92453.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435322495|gb|ELO94768.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435330751|gb|ELP02017.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435339442|gb|ELP08383.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436414488|gb|ELP12416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436416602|gb|ELP14507.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436423447|gb|ELP21258.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|444846517|gb|ELX71685.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444850651|gb|ELX75749.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444852520|gb|ELX77598.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444855752|gb|ELX80796.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444864923|gb|ELX89705.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444868362|gb|ELX93005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444877421|gb|ELY01568.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444877648|gb|ELY01788.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444882918|gb|ELY06832.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444888456|gb|ELY12028.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|451909860|gb|AGF81666.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 557
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|343521385|ref|ZP_08758353.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343396591|gb|EGV09128.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 464
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 27/206 (13%)
Query: 73 DSSDANNRQSQSR--SSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
D + N S R S DW+ + + E ++ GGLL + F+P
Sbjct: 146 DDGEGNVVLSTRRVESLKDWQNLVEKFNNKELVEAEVVKEVKGGLLATVDGINAFIPASH 205
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISV-----KVIQANEEMKKLVFSEK-DAVWNKYSS 184
++ S + I K L +II++ KV+ + E+++ EK D W+K S
Sbjct: 206 ITTSF----VKDFTPYIGKKLECAIINIDERKKKVVLSRREVEEKELQEKLDLAWSKLS- 260
Query: 185 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEV 239
V+D+ G D+GAF++L DGL +HVS++SW+ I+ DIL+ GDEV
Sbjct: 261 ---VDDVLTGTVRKLTDFGAFVNLGDVDGL------IHVSDISWNRIKKPSDILSVGDEV 311
Query: 240 RVKVIKIDREKSRITLSIKQLEEDPL 265
V ++K++RE++RI+L +KQL + P
Sbjct: 312 EVVILKLNRERNRISLGLKQLTKKPF 337
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L+ ++ GLVH+S++S D I+ D+LN GDEV VK+I ID E +I+L
Sbjct: 359 DFGAFVKLK-----ENVEGLVHISQISHDHIEKASDVLNIGDEVEVKIINIDEENQKISL 413
Query: 256 SIKQLEEDP 264
SIK+L E P
Sbjct: 414 SIKELLEKP 422
>gi|308186257|ref|YP_003930388.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
gi|308056767|gb|ADO08939.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
Length = 557
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETL 269
Q +E + T+
Sbjct: 523 DQADEKEAINTV 534
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|161503891|ref|YP_001571003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|339998838|ref|YP_004729721.1| 30S ribosomal protein S1 [Salmonella bongori NCTC 12419]
gi|423139411|ref|ZP_17127049.1| ribosomal protein S1 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|160865238|gb|ABX21861.1| hypothetical protein SARI_01981 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|339512199|emb|CCC29930.1| 30S ribosomal protein S1 [Salmonella bongori NCTC 12419]
gi|379051965|gb|EHY69856.1| ribosomal protein S1 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 557
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|417382408|ref|ZP_12148382.1| SSU ribosomal protein S1p, partial [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353614953|gb|EHC66625.1| SSU ribosomal protein S1p, partial [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
Length = 380
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|251772978|gb|EES53535.1| ribosomal protein S1 [Leptospirillum ferrodiazotrophum]
Length = 505
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 58 NAAKITP-TTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNG 112
AA + P ++ L++ DA S+ AD W + A E G + EGK+
Sbjct: 37 EAASLKPGDRISVYLEEREDAMGNLVLSKEKADRMKVWDSLEALSEKGEVLEGKVISRIK 96
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG+ V L FLP Q+ + + ++ + L G I V++I+ N++ ++
Sbjct: 97 GGMTVDI-GLKAFLPGSQID--------LRPVRDMDR-LVGQPIQVRIIKMNKKRGNIIV 146
Query: 173 SEKDAV--WNKYSSRVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + + W ++ +E + G DYGAFI L DGL H+T +
Sbjct: 147 SRRVLLEEWRDRRKKLTMESLKEGEVLEGIVKNITDYGAFIDLGGVDGLLHIT------D 200
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+SW + ++++ GD++ V V+K D+E R++L +KQL+ DP T+ P+G
Sbjct: 201 MSWGRVSSPQNLMAVGDKINVMVLKHDKETGRVSLGLKQLKSDP-WSTVASRYPEG 255
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWN 180
G + +MS +H K P K + G + KV++ +E+ +K+ K W+
Sbjct: 280 GLMHITEMSWNHEVKHPSKIMA------VGDTVEAKVLKIDEKNRKISLGLKQLGPNPWD 333
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILN 234
R + I G+ D+G F+ L + GL+H+S++SW ++ ++
Sbjct: 334 LVEDRYPIGTIVSGKVKSLTDFGVFVGLD-----EGIDGLIHISDLSWTRHVRHPSEMFK 388
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+G +V V+KI++E+ R++L KQ+ DP
Sbjct: 389 KGQKVEAIVLKIEKERQRLSLGYKQMASDP 418
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + EG ++ G + + G L MS PQ + G I+
Sbjct: 168 KEGEVLEGIVKNITDYGAFIDLGGVDGLLHITDMSWGR-VSSPQNLMA------VGDKIN 220
Query: 158 VKVIQANEE-------MKKLVFSEKDAVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
V V++ ++E +K+L V ++Y S+V + + + DYGAF+ +
Sbjct: 221 VMVLKHDKETGRVSLGLKQLKSDPWSTVASRYPEGSKVPAKVVSI-TDYGAFLEIE---- 275
Query: 209 LYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H++E+SW+ ++ I+ GD V KV+KID + +I+L +KQL +P
Sbjct: 276 -PGVEGLMHITEMSWNHEVKHPSKIMAVGDTVEAKVLKIDEKNRKISLGLKQLGPNP 331
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I GK++ G+ V + G + +S + + P + + G +
Sbjct: 342 GTIVSGKVKSLTDFGVFVGLDEGIDGLIHISDLSWTRHVRHPSEMFKK------GQKVEA 395
Query: 159 KVIQANEEMKKLVFSEKDAVWNKYSS----RVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V++ +E ++L K + + + R V G+ D+G F+ +
Sbjct: 396 IVLKIEKERQRLSLGYKQMASDPWETDIPERFQVGQSMKGKVTKVMDFGFFVEI-----A 450
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVHVSEV + + + G E++V+++K+D+ + +I LS+K +E
Sbjct: 451 EGVEGLVHVSEVDLPNGERLDQLFPVGTELQVRIVKVDKGERKIGLSVKGADE 503
>gi|422651727|ref|ZP_16714519.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330964802|gb|EGH65062.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 563
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFHNDAGELTIKIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTALVTNL 289
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 290 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 343
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 344 ISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 522
>gi|436747420|ref|ZP_20520024.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434971511|gb|ELL64015.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
Length = 538
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 67 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 121
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 122 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 176
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 177 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 230
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 231 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 258
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 335 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 389
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 390 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 422
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 171 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 223
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 224 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 278
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 279 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 334
>gi|412986743|emb|CCO15169.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 363
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 19/179 (10%)
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
A W+ R + ++ N GG+LV +L GF+P + P + + +
Sbjct: 149 AAWERCRQAQADDLALSSEVLSVNRGGILVEVENLRGFIPQSHLGPRLALGDRDE----- 203
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 202
L G + VK I+ +EE +LV S + A ++V D+ G + YGAF+
Sbjct: 204 ---LVGQTLPVKFIEVDEEKNRLVASHRLATDLVSGEGLDVGDVVTGIVQAVKPYGAFVD 260
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ +GL+H+S++S + I + ++L+ GDE++V ++ D+E+ R++LS K+LE
Sbjct: 261 VGGQ------SGLLHISQISHERIVAVENVLSPGDELKVLILSKDKERGRLSLSTKKLE 313
>gi|404378155|ref|ZP_10983253.1| 30S ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
gi|404295164|gb|EJZ50282.1| 30S ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
Length = 563
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G T+ + + + + +++ +ADW E G I G I G
Sbjct: 63 GDLEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMEDGEILSGVINGKVK 122
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 123 GGLTVMINSIRAFLPGSLVDVRPIKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 178
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 179 -LEATLGEERKALMENLQEDTIVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 231
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV++ D++K R++L +KQL EDP + L + PQG + K
Sbjct: 232 RVKHPSEVLEVGQEVEAKVLRFDQDKQRVSLGLKQLGEDP-WDGLARRYPQGTRLFGK 288
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 276 ARRYPQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V ++ +E+ +++ K W + + D G D+G F+ L
Sbjct: 329 LGDEVEVMILDIDEDKRRISLGMKQCQSNPWQDFEANYTKGDKIKGAVKSITDFGVFVGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 389 --PG---NIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
>gi|398938569|ref|ZP_10667923.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
gi|407365592|ref|ZP_11112124.1| 30S ribosomal protein S1 [Pseudomonas mandelii JR-1]
gi|398165610|gb|EJM53725.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
Length = 563
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|350572023|ref|ZP_08940334.1| 30S ribosomal protein S1 [Neisseria wadsworthii 9715]
gi|349790792|gb|EGZ44692.1| 30S ribosomal protein S1 [Neisseria wadsworthii 9715]
Length = 559
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ N T+ + + + + +++ +ADW E+G I G I G
Sbjct: 57 GEVEVNVGDFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMENGDILSGVINGKVK 116
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 117 GGLTVMINSIRAFLPGSLVDVRPIKDTSHFEGKEVEFKVIKLDKKRNNVVVSRRAV---- 172
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 173 -LEATLGEERKALLENLQEGSVVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 225
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ ++L G EV KV+K D++K R++L +KQL EDP
Sbjct: 226 RVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDP 265
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ++ ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 ARRYPQNTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V +++ +E+ +++ K W +++ N D G D+G F+ L
Sbjct: 323 LGDEVEVMILEIDEDRRRISLGMKQCQANPWEDFAANHNKGDKIKGAVKSITDFGVFVGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 383 --PG---NIDGLVHLSDLSWSESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEG 437
Query: 263 DPL 265
DP
Sbjct: 438 DPF 440
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G + SE + D ++D+ LNEGDEV ++ +DR+ I LS+K
Sbjct: 472 EVEGYLPASEFAADRVEDLTTKLNEGDEVEAVIVTVDRKNRSIKLSVK 519
>gi|260597309|ref|YP_003209880.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
gi|429103806|ref|ZP_19165780.1| SSU ribosomal protein S1p [Cronobacter turicensis 564]
gi|260216486|emb|CBA29643.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
gi|426290455|emb|CCJ91893.1| SSU ribosomal protein S1p [Cronobacter turicensis 564]
Length = 557
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|424845505|ref|ZP_18270116.1| ribosomal protein S1 [Jonquetella anthropi DSM 22815]
gi|363986943|gb|EHM13773.1| ribosomal protein S1 [Jonquetella anthropi DSM 22815]
Length = 550
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V SL GF+P ++ P + E V +++ ++ ++LV
Sbjct: 173 GGLIVDCCSLEGFIPISHLAAEGRGVNPGRFEEEE--------FEVCLLEKDKRKRRLVL 224
Query: 173 SEK-------DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + +A ++ V V D+ G +GAF+++ + GLVH+SE
Sbjct: 225 SRRVLLDKDLNARREEFYQNVKVGDVVDGTVSSLTSFGAFVNV------GPIDGLVHLSE 278
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+SW I+D+L +GDEV+VKVI IDRE ++I+LS++Q++ DP E+
Sbjct: 279 ISWQRSAKIKDLLKKGDEVKVKVIGIDRENNKISLSMRQVQGDPWDTVTER 329
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + G V + G + ++S S K I ++ K G + VK
Sbjct: 248 GDVVDGTVSSLTSFGAFVNVGPIDGLVHLSEISWQRSAK-----IKDLLK--KGDEVKVK 300
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSR-----VNVEDIFVGRDYGAFIHLRFPDGLYH 211
VI + E K+ S + W+ + R + D+GAF+ +
Sbjct: 301 VIGIDRENNKISLSMRQVQGDPWDTVTERWTKGQTTTGVVTNVTDFGAFVEVE-----PG 355
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+ ++SW I+ RD++ +G E+ V V+ ++ ++ R++L KQL DP
Sbjct: 356 IEGLVHIGDLSWARIKHPRDVIRKGQEIEVVVLDVEADRRRMSLGYKQL-NDP 407
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 161 IQANEEMKKLVFSEKDAVWNKYSSR-VNVEDIFVG----RDYGAFIHLRFPDGLYHLTGL 215
++A+ L + + + WN +R +D+ V D+GAF+ L + GL
Sbjct: 390 VEADRRRMSLGYKQLNDPWNGIENRYAKGQDVQVKVVRLADFGAFVELE-----EGVEGL 444
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+H+S++S + +D+L EG EV ++++++ + RI LS++ LE
Sbjct: 445 IHISQLSSKRVDKPKDVLTEGQEVTARILEVNPTERRIRLSLRALE 490
>gi|378955695|ref|YP_005213182.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357206306|gb|AET54352.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP-QKSIHEIA 148
W+ G EGKI+ G+ F L G + S EP ++++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGI---FIGLDGGIDGLVHLSDISWNEPGEEAVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|317047558|ref|YP_004115206.1| 30S ribosomal protein S1 [Pantoea sp. At-9b]
gi|316949175|gb|ADU68650.1| ribosomal protein S1 [Pantoea sp. At-9b]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +L+ GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRIEDATLVLSVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETL 269
Q +E + T+
Sbjct: 523 DQADEKEAINTV 534
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
RKU-1]
gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
Length = 543
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 10/192 (5%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G + G++ + G VR V G +P ++ ++ +K++ E+
Sbjct: 262 WEKVKEKYPVGKVVGGEVISIHSFGFFVRLEPGVEGLVPRSEVFWGNA----RKNLEEVV 317
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRF 205
G ++ V+VI ++E +KL S + A W R NV ++ G+ G F
Sbjct: 318 S--VGDLVKVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVTGIIKQGAF 375
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSI++ +E+P
Sbjct: 376 VELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPW 435
Query: 266 LETLEKVIPQGL 277
L+++ P +
Sbjct: 436 ERALKELKPDSI 447
>gi|440230307|ref|YP_007344100.1| ribosomal protein S1 [Serratia marcescens FGI94]
gi|440052012|gb|AGB81915.1| ribosomal protein S1 [Serratia marcescens FGI94]
Length = 580
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 109 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 163
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 164 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 218
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 219 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 272
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 273 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 300
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 377 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 431
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 432 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 464
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 198 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 256
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 257 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 310
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 311 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 364
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 365 ISLGLKQCKSNP 376
>gi|28868956|ref|NP_791575.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato str.
DC3000]
gi|66046871|ref|YP_236712.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
gi|71737484|ref|YP_275804.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213968716|ref|ZP_03396858.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
gi|237799023|ref|ZP_04587484.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
gi|257485842|ref|ZP_05639883.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289623736|ref|ZP_06456690.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289648178|ref|ZP_06479521.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
2250]
gi|289677165|ref|ZP_06498055.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae FF5]
gi|301381331|ref|ZP_07229749.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato Max13]
gi|302130032|ref|ZP_07256022.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|302187670|ref|ZP_07264343.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae 642]
gi|416017874|ref|ZP_11564911.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
B076]
gi|416028555|ref|ZP_11571500.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422297745|ref|ZP_16385373.1| 30S ribosomal protein S1 [Pseudomonas avellanae BPIC 631]
gi|422581253|ref|ZP_16656396.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|422590052|ref|ZP_16664710.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422596362|ref|ZP_16670644.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605686|ref|ZP_16677699.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
301020]
gi|422646995|ref|ZP_16710126.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422658217|ref|ZP_16720653.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|422674614|ref|ZP_16733966.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
M302273]
gi|422683598|ref|ZP_16741857.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|424068785|ref|ZP_17806234.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073206|ref|ZP_17810624.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440722403|ref|ZP_20902784.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34876]
gi|440727495|ref|ZP_20907724.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34881]
gi|440745161|ref|ZP_20924457.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP39023]
gi|443642916|ref|ZP_21126766.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B64]
gi|28852196|gb|AAO55270.1| ribosomal protein S1 [Pseudomonas syringae pv. tomato str. DC3000]
gi|63257578|gb|AAY38674.1| SSU ribosomal protein S1P [Pseudomonas syringae pv. syringae B728a]
gi|71558037|gb|AAZ37248.1| ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola 1448A]
gi|213926649|gb|EEB60202.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
gi|298157300|gb|EFH98383.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320323347|gb|EFW79435.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
B076]
gi|320327544|gb|EFW83556.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330866103|gb|EGH00812.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330877036|gb|EGH11185.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330889341|gb|EGH22002.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
301020]
gi|330960540|gb|EGH60800.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330972340|gb|EGH72406.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
M302273]
gi|330986661|gb|EGH84764.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331012931|gb|EGH92987.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|331016846|gb|EGH96902.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331021877|gb|EGI01934.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
gi|407990767|gb|EKG32778.1| 30S ribosomal protein S1 [Pseudomonas avellanae BPIC 631]
gi|407996406|gb|EKG36879.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996519|gb|EKG36988.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440361255|gb|ELP98487.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34876]
gi|440363633|gb|ELQ00794.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34881]
gi|440372837|gb|ELQ09615.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP39023]
gi|443282933|gb|ELS41938.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B64]
Length = 563
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFHNDAGELTIKIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 522
>gi|304397071|ref|ZP_07378950.1| ribosomal protein S1 [Pantoea sp. aB]
gi|372276214|ref|ZP_09512250.1| 30S ribosomal protein S1 [Pantoea sp. SL1_M5]
gi|390433352|ref|ZP_10221890.1| 30S ribosomal protein S1 [Pantoea agglomerans IG1]
gi|440757654|ref|ZP_20936837.1| SSU ribosomal protein S1p [Pantoea agglomerans 299R]
gi|304355220|gb|EFM19588.1| ribosomal protein S1 [Pantoea sp. aB]
gi|436428643|gb|ELP26297.1| SSU ribosomal protein S1p [Pantoea agglomerans 299R]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 23/199 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEKVIPQG 276
Q +E + T+ +G
Sbjct: 523 DQADEKEAINTVNTKQEEG 541
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|419978717|ref|ZP_14494012.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419989558|ref|ZP_14504533.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419995022|ref|ZP_14509830.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420019074|ref|ZP_14533269.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397351160|gb|EJJ44245.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397368795|gb|EJJ61400.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397369057|gb|EJJ61659.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397389735|gb|EJJ81668.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I VG+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEK 271
+ EE + T+ K
Sbjct: 523 DEAEEKDAIATVNK 536
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|213418378|ref|ZP_03351444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 515
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 62 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 116
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 117 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 171
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 172 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 225
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 226 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 253
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 330 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 384
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 385 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 417
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 166 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 218
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 219 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 273
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 274 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 329
>gi|386034122|ref|YP_005954035.1| 30S ribosomal protein S1 [Klebsiella pneumoniae KCTC 2242]
gi|424829917|ref|ZP_18254645.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|339761250|gb|AEJ97470.1| 30S ribosomal protein S1 [Klebsiella pneumoniae KCTC 2242]
gi|414707342|emb|CCN29046.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 212 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I VG+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEK 271
+ EE + T+ K
Sbjct: 523 DEAEEKDAIATVNK 536
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|336249513|ref|YP_004593223.1| 30S ribosomal protein S1 [Enterobacter aerogenes KCTC 2190]
gi|444352326|ref|YP_007388470.1| SSU ribosomal protein S1p [Enterobacter aerogenes EA1509E]
gi|334735569|gb|AEG97944.1| 30S ribosomal protein S1 [Enterobacter aerogenes KCTC 2190]
gi|443903156|emb|CCG30930.1| SSU ribosomal protein S1p [Enterobacter aerogenes EA1509E]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|293396771|ref|ZP_06641047.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
gi|291421035|gb|EFE94288.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSMNKKGTIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL-----AGGVEGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|381405099|ref|ZP_09929783.1| 30S ribosomal protein S1 [Pantoea sp. Sc1]
gi|380738298|gb|EIB99361.1| 30S ribosomal protein S1 [Pantoea sp. Sc1]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 23/199 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQLFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEKVIPQG 276
Q +E + T+ +G
Sbjct: 523 DQADEKEAINTVNTKQEEG 541
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|416301549|ref|ZP_11653053.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
gi|320184257|gb|EFW59070.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
Length = 560
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|292487830|ref|YP_003530705.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
gi|292899057|ref|YP_003538426.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
gi|428784766|ref|ZP_19002257.1| 30S ribosomal protein S1 [Erwinia amylovora ACW56400]
gi|291198905|emb|CBJ46015.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
gi|291553252|emb|CBA20297.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
gi|312171951|emb|CBX80208.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC BAA-2158]
gi|426276328|gb|EKV54055.1| 30S ribosomal protein S1 [Erwinia amylovora ACW56400]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIMVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y S I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVSLNKKGAIVNGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETL 269
Q +E + T+
Sbjct: 523 DQADEKEAINTV 534
>gi|152969495|ref|YP_001334604.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206580559|ref|YP_002239440.1| 30S ribosomal protein S1 [Klebsiella pneumoniae 342]
gi|238893967|ref|YP_002918701.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262040990|ref|ZP_06014212.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936291|ref|YP_003440350.1| 30S ribosomal protein S1 [Klebsiella variicola At-22]
gi|290510654|ref|ZP_06550024.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
gi|330014030|ref|ZP_08307846.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
gi|365139372|ref|ZP_09345780.1| 30S ribosomal protein S1 [Klebsiella sp. 4_1_44FAA]
gi|378977977|ref|YP_005226118.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402781546|ref|YP_006637092.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|419762602|ref|ZP_14288849.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|419971911|ref|ZP_14487341.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419985490|ref|ZP_14500630.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|420003493|ref|ZP_14518138.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420009143|ref|ZP_14523628.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016878|ref|ZP_14531164.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420025116|ref|ZP_14539126.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420032226|ref|ZP_14546042.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420039559|ref|ZP_14553191.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420043647|ref|ZP_14557133.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420050029|ref|ZP_14563332.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420056927|ref|ZP_14570076.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420062157|ref|ZP_14575135.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068151|ref|ZP_14580935.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420073982|ref|ZP_14586600.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420077587|ref|ZP_14590051.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420082145|ref|ZP_14594446.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421909063|ref|ZP_16338885.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421916417|ref|ZP_16345993.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424934218|ref|ZP_18352590.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425077408|ref|ZP_18480511.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425080751|ref|ZP_18483848.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425088041|ref|ZP_18491134.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425090813|ref|ZP_18493898.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|428150894|ref|ZP_18998650.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428933585|ref|ZP_19007134.1| 30S ribosomal protein S1 [Klebsiella pneumoniae JHCK1]
gi|428941941|ref|ZP_19014964.1| 30S ribosomal protein S1 [Klebsiella pneumoniae VA360]
gi|449049532|ref|ZP_21731468.1| 30S ribosomal protein S1 [Klebsiella pneumoniae hvKP1]
gi|150954344|gb|ABR76374.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206569617|gb|ACI11393.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
gi|238546283|dbj|BAH62634.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259041684|gb|EEW42733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891000|gb|ADC59318.1| ribosomal protein S1 [Klebsiella variicola At-22]
gi|289777370|gb|EFD85368.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
gi|328533287|gb|EGF60039.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
gi|363654341|gb|EHL93251.1| 30S ribosomal protein S1 [Klebsiella sp. 4_1_44FAA]
gi|364517388|gb|AEW60516.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397351304|gb|EJJ44388.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397352849|gb|EJJ45927.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397369313|gb|EJJ61914.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397374358|gb|EJJ66700.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397381923|gb|EJJ74088.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397397673|gb|EJJ89345.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397397993|gb|EJJ89659.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397403004|gb|EJJ94597.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397411956|gb|EJK03200.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397413453|gb|EJK04666.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397420037|gb|EJK11138.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397426938|gb|EJK17733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397428884|gb|EJK19612.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397437077|gb|EJK27653.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397445776|gb|EJK36009.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397452507|gb|EJK42576.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|397744783|gb|EJK91994.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|402542423|gb|AFQ66572.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|405593117|gb|EKB66569.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405602173|gb|EKB75315.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405605522|gb|EKB78552.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405613549|gb|EKB86280.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|407808405|gb|EKF79656.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410116907|emb|CCM81510.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410121210|emb|CCM88618.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426299596|gb|EKV61925.1| 30S ribosomal protein S1 [Klebsiella pneumoniae VA360]
gi|426304956|gb|EKV67088.1| 30S ribosomal protein S1 [Klebsiella pneumoniae JHCK1]
gi|427539163|emb|CCM94788.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448876758|gb|EMB11738.1| 30S ribosomal protein S1 [Klebsiella pneumoniae hvKP1]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y + I VG+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETLEK 271
+ EE + T+ K
Sbjct: 523 DEAEEKDAIATVNK 536
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|432464872|ref|ZP_19706977.1| 30S ribosomal protein S1 [Escherichia coli KTE205]
gi|432582966|ref|ZP_19819376.1| 30S ribosomal protein S1 [Escherichia coli KTE57]
gi|433071958|ref|ZP_20258651.1| 30S ribosomal protein S1 [Escherichia coli KTE129]
gi|433119458|ref|ZP_20305163.1| 30S ribosomal protein S1 [Escherichia coli KTE157]
gi|433182445|ref|ZP_20366739.1| 30S ribosomal protein S1 [Escherichia coli KTE85]
gi|430996429|gb|ELD12713.1| 30S ribosomal protein S1 [Escherichia coli KTE205]
gi|431119982|gb|ELE22981.1| 30S ribosomal protein S1 [Escherichia coli KTE57]
gi|431591821|gb|ELI62730.1| 30S ribosomal protein S1 [Escherichia coli KTE129]
gi|431647777|gb|ELJ15182.1| 30S ribosomal protein S1 [Escherichia coli KTE157]
gi|431710873|gb|ELJ75238.1| 30S ribosomal protein S1 [Escherichia coli KTE85]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G I+ V V+ +EE +++ K W +++ N D G+ D+G
Sbjct: 324 ----VGDIVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQL EDP
Sbjct: 434 KQLAEDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDIVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|397167778|ref|ZP_10491218.1| ribosomal protein S1 [Enterobacter radicincitans DSM 16656]
gi|396090596|gb|EJI88166.1| ribosomal protein S1 [Enterobacter radicincitans DSM 16656]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLCLKQCKSNP 353
>gi|374336157|ref|YP_005092844.1| 30S ribosomal protein S1 [Oceanimonas sp. GK1]
gi|372985844|gb|AEY02094.1| 30S ribosomal protein S1 [Oceanimonas sp. GK1]
Length = 556
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY++ + G I G GG V S+ FLP + +
Sbjct: 86 REKAKRHEAWLQLEKAYEDEETVT-GVINGKVKGGFTVEVNSIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+ + H L G + KVI+ +++ +V S + + + S+ +E++ G+
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIETENSAEREQLLENLQEGQEV 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP ++ + P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWVDIANR-YPEG 277
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVS------VGDNVDVMVLDIDEERRRISLGLKQCKSNPWQ 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDIL 233
++ N D G+ D+G FI L DG + GLVH+S++SW+ D +RD
Sbjct: 356 LFAETHNKGDRVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNANGDDAVRD-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ++EDP
Sbjct: 410 KKGDEIEAVVLQVDPERERISLGVKQIDEDPF 441
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + + G +G ++ G V + G L M+ K P +
Sbjct: 175 ETENSAEREQLLENLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W ++R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVDIANRYPEGTRLAGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I +++ GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVSVGDNVDVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + V+++S D I+D +LN G+EV + + IDR+ ++LSI+ + EE ++T
Sbjct: 474 VEGYIRVADISRDRIEDASTVLNAGEEVEARFMGIDRKNRTVSLSIRAKDEAEEKAAIDT 533
Query: 269 L 269
L
Sbjct: 534 L 534
>gi|311280175|ref|YP_003942406.1| 30S ribosomal protein S1 [Enterobacter cloacae SCF1]
gi|308749370|gb|ADO49122.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV------W---NKYSSRVNVEDIFVGRDYGA 199
KG I+ V+Q + E +++ K W NK + VN + V GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKVTAVDA-KGA 466
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS++
Sbjct: 467 TVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSVRA 521
Query: 260 LEE 262
+E
Sbjct: 522 KDE 524
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|365848847|ref|ZP_09389318.1| ribosomal protein S1 [Yokenella regensburgei ATCC 43003]
gi|364569491|gb|EHM47113.1| ribosomal protein S1 [Yokenella regensburgei ATCC 43003]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|300937745|ref|ZP_07152546.1| ribosomal protein S1 [Escherichia coli MS 21-1]
gi|300457252|gb|EFK20745.1| ribosomal protein S1 [Escherichia coli MS 21-1]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 [Citrobacter koseri ATCC BAA-895]
gi|157083608|gb|ABV13286.1| hypothetical protein CKO_02162 [Citrobacter koseri ATCC BAA-895]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|54778754|gb|AAV39588.1| ribosomal protein S1 [synthetic construct]
Length = 584
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 109 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 163
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 164 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 218
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 219 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 272
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 273 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 301
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 378 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 432
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 433 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 465
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 378 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 434
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 435 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 491
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 492 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 546
Query: 261 EE 262
+E
Sbjct: 547 DE 548
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 214 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 266
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 267 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 321
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 322 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 377
>gi|432371666|ref|ZP_19614717.1| 30S ribosomal protein S1 [Escherichia coli KTE11]
gi|430898809|gb|ELC20940.1| 30S ribosomal protein S1 [Escherichia coli KTE11]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGSIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|419125377|ref|ZP_13670273.1| ribosomal protein S1 [Escherichia coli DEC5C]
gi|377978172|gb|EHV41452.1| ribosomal protein S1 [Escherichia coli DEC5C]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLD-----SGIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + S + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDSGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|443478405|ref|ZP_21068163.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
gi|443016312|gb|ELS31002.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
Length = 342
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + I N GG LVR L GF+P +S ++P++
Sbjct: 111 WERVRQLQAEDATVRSLIFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 160
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ NK V + G + YGAFI
Sbjct: 161 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFI--- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ ++GL+H+SE+S + I+ ++ N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ---DIGGVSGLLHISEISHEHIETPHNVFNVNDEVKVMIIDLDAERGRISLSTKQLEAEP 273
>gi|283784737|ref|YP_003364602.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
gi|282948191|emb|CBG87758.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 353
>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 90 WKAARAY-KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ R KE IY ++ N GG LVR L GF+P +S + +E
Sbjct: 164 WERVRQLQKEDATIY-SEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEE--------- 213
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 203
L + +K ++ +EE +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 214 --LVAEYLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDI 271
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +
Sbjct: 272 G------GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPE 325
Query: 264 P--LLETLEKVIPQGLEPYLKSFYKKMV 289
P +L +KV + E + + YK+M+
Sbjct: 326 PGDMLTDPQKVFDKAEE--MAAKYKEML 351
>gi|419196034|ref|ZP_13739438.1| ribosomal protein S1 [Escherichia coli DEC8A]
gi|378051842|gb|EHW14157.1| ribosomal protein S1 [Escherichia coli DEC8A]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
>gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EDL933]
gi|15830248|ref|NP_309021.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. Sakai]
gi|16128878|ref|NP_415431.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MG1655]
gi|24112320|ref|NP_706830.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 301]
gi|26246936|ref|NP_752976.1| 30S ribosomal protein S1 [Escherichia coli CFT073]
gi|30062446|ref|NP_836617.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|74311468|ref|YP_309887.1| 30S ribosomal protein S1 [Shigella sonnei Ss046]
gi|82544650|ref|YP_408597.1| 30S ribosomal protein S1 [Shigella boydii Sb227]
gi|91210012|ref|YP_539998.1| 30S ribosomal protein S1 [Escherichia coli UTI89]
gi|110641108|ref|YP_668838.1| 30S ribosomal protein S1 [Escherichia coli 536]
gi|110804919|ref|YP_688439.1| 30S ribosomal protein S1 [Shigella flexneri 5 str. 8401]
gi|117623129|ref|YP_852042.1| 30S ribosomal protein S1 [Escherichia coli APEC O1]
gi|157156817|ref|YP_001462129.1| 30S ribosomal protein S1 [Escherichia coli E24377A]
gi|157160433|ref|YP_001457751.1| 30S ribosomal protein S1 [Escherichia coli HS]
gi|168751174|ref|ZP_02776196.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
gi|168757003|ref|ZP_02782010.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
gi|168762954|ref|ZP_02787961.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
gi|168787340|ref|ZP_02812347.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
gi|168801406|ref|ZP_02826413.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
gi|170020687|ref|YP_001725641.1| 30S ribosomal protein S1 [Escherichia coli ATCC 8739]
gi|170080569|ref|YP_001729889.1| 30S ribosomal protein S1 [Escherichia coli str. K-12 substr. DH10B]
gi|170682691|ref|YP_001744259.1| 30S ribosomal protein S1 [Escherichia coli SMS-3-5]
gi|170769166|ref|ZP_02903619.1| ribosomal protein S1 [Escherichia albertii TW07627]
gi|187733119|ref|YP_001880894.1| 30S ribosomal protein S1 [Shigella boydii CDC 3083-94]
gi|188493632|ref|ZP_03000902.1| ribosomal protein S1 [Escherichia coli 53638]
gi|191172054|ref|ZP_03033598.1| ribosomal protein S1 [Escherichia coli F11]
gi|193064659|ref|ZP_03045738.1| ribosomal protein S1 [Escherichia coli E22]
gi|193070761|ref|ZP_03051696.1| ribosomal protein S1 [Escherichia coli E110019]
gi|194428403|ref|ZP_03060944.1| ribosomal protein S1 [Escherichia coli B171]
gi|194438750|ref|ZP_03070837.1| ribosomal protein S1 [Escherichia coli 101-1]
gi|208815475|ref|ZP_03256654.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
gi|208822805|ref|ZP_03263124.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
gi|209397472|ref|YP_002269583.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
gi|209918161|ref|YP_002292245.1| 30S ribosomal protein S1 [Escherichia coli SE11]
gi|215486036|ref|YP_002328467.1| 30S ribosomal protein S1 [Escherichia coli O127:H6 str. E2348/69]
gi|217326370|ref|ZP_03442454.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
gi|218553498|ref|YP_002386411.1| 30S ribosomal protein S1 [Escherichia coli IAI1]
gi|218557816|ref|YP_002390729.1| 30S ribosomal protein S1 [Escherichia coli S88]
gi|218688751|ref|YP_002396963.1| 30S ribosomal protein S1 [Escherichia coli ED1a]
gi|218694384|ref|YP_002402051.1| 30S ribosomal protein S1 [Escherichia coli 55989]
gi|218700570|ref|YP_002408199.1| 30S ribosomal protein S1 [Escherichia coli IAI39]
gi|218704338|ref|YP_002411857.1| 30S ribosomal protein S1 [Escherichia coli UMN026]
gi|222155637|ref|YP_002555776.1| 30S ribosomal protein S1 [Escherichia coli LF82]
gi|227884124|ref|ZP_04001929.1| 30S ribosomal protein S1 [Escherichia coli 83972]
gi|237707101|ref|ZP_04537582.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
gi|238900169|ref|YP_002925965.1| 30S ribosomal protein S1 [Escherichia coli BW2952]
gi|251784453|ref|YP_002998757.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|253774060|ref|YP_003036891.1| 30S ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161025|ref|YP_003044133.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
gi|254287833|ref|YP_003053581.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|254792110|ref|YP_003076947.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. TW14359]
gi|260843161|ref|YP_003220939.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
12009]
gi|260854202|ref|YP_003228093.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. 11368]
gi|260867083|ref|YP_003233485.1| 30S ribosomal protein S1 [Escherichia coli O111:H- str. 11128]
gi|261227414|ref|ZP_05941695.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256163|ref|ZP_05948696.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
FRIK966]
gi|291281912|ref|YP_003498730.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
gi|293404216|ref|ZP_06648210.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
gi|293409288|ref|ZP_06652864.1| 30S ribosomal protein S1 [Escherichia coli B354]
gi|293414191|ref|ZP_06656840.1| 30S ribosomal protein S1 [Escherichia coli B185]
gi|293433208|ref|ZP_06661636.1| 30S ribosomal protein S1 [Escherichia coli B088]
gi|297520622|ref|ZP_06939008.1| 30S ribosomal protein S1 [Escherichia coli OP50]
gi|298379996|ref|ZP_06989601.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
gi|300816985|ref|ZP_07097204.1| ribosomal protein S1 [Escherichia coli MS 107-1]
gi|300823651|ref|ZP_07103778.1| ribosomal protein S1 [Escherichia coli MS 119-7]
gi|300901659|ref|ZP_07119719.1| ribosomal protein S1 [Escherichia coli MS 198-1]
gi|300902930|ref|ZP_07120875.1| ribosomal protein S1 [Escherichia coli MS 84-1]
gi|300921052|ref|ZP_07137438.1| ribosomal protein S1 [Escherichia coli MS 115-1]
gi|300925411|ref|ZP_07141296.1| ribosomal protein S1 [Escherichia coli MS 182-1]
gi|300929606|ref|ZP_07145068.1| ribosomal protein S1 [Escherichia coli MS 187-1]
gi|300949727|ref|ZP_07163705.1| ribosomal protein S1 [Escherichia coli MS 116-1]
gi|300955441|ref|ZP_07167815.1| ribosomal protein S1 [Escherichia coli MS 175-1]
gi|300978464|ref|ZP_07174279.1| ribosomal protein S1 [Escherichia coli MS 45-1]
gi|300983139|ref|ZP_07176453.1| ribosomal protein S1 [Escherichia coli MS 200-1]
gi|301022405|ref|ZP_07186288.1| ribosomal protein S1 [Escherichia coli MS 196-1]
gi|301023014|ref|ZP_07186825.1| ribosomal protein S1 [Escherichia coli MS 69-1]
gi|301047830|ref|ZP_07194881.1| ribosomal protein S1 [Escherichia coli MS 185-1]
gi|301302481|ref|ZP_07208612.1| ribosomal protein S1 [Escherichia coli MS 124-1]
gi|301326622|ref|ZP_07219955.1| ribosomal protein S1 [Escherichia coli MS 78-1]
gi|301643431|ref|ZP_07243479.1| ribosomal protein S1 [Escherichia coli MS 146-1]
gi|306812636|ref|ZP_07446829.1| 30S ribosomal protein S1 [Escherichia coli NC101]
gi|307311702|ref|ZP_07591342.1| ribosomal protein S1 [Escherichia coli W]
gi|309795105|ref|ZP_07689525.1| ribosomal protein S1 [Escherichia coli MS 145-7]
gi|312969023|ref|ZP_07783230.1| ribosomal protein S1 [Escherichia coli 2362-75]
gi|312971039|ref|ZP_07785218.1| ribosomal protein S1 [Escherichia coli 1827-70]
gi|331641437|ref|ZP_08342572.1| ribosomal protein S1 [Escherichia coli H736]
gi|331646176|ref|ZP_08347279.1| ribosomal protein S1 [Escherichia coli M605]
gi|331651931|ref|ZP_08352950.1| ribosomal protein S1 [Escherichia coli M718]
gi|331662324|ref|ZP_08363247.1| ribosomal protein S1 [Escherichia coli TA143]
gi|331667288|ref|ZP_08368153.1| ribosomal protein S1 [Escherichia coli TA271]
gi|331672450|ref|ZP_08373240.1| ribosomal protein S1 [Escherichia coli TA280]
gi|331676699|ref|ZP_08377395.1| ribosomal protein S1 [Escherichia coli H591]
gi|331682418|ref|ZP_08383037.1| ribosomal protein S1 [Escherichia coli H299]
gi|332282184|ref|ZP_08394597.1| ribosomal protein S1 [Shigella sp. D9]
gi|366159030|ref|ZP_09458892.1| 30S ribosomal protein S1 [Escherichia sp. TW09308]
gi|378713683|ref|YP_005278576.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|383177553|ref|YP_005455558.1| 30S ribosomal protein S1 [Shigella sonnei 53G]
gi|384542486|ref|YP_005726548.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
gi|386280027|ref|ZP_10057697.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
gi|386596254|ref|YP_006092654.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|386598690|ref|YP_006100196.1| 30S ribosomal protein S1 [Escherichia coli IHE3034]
gi|386605178|ref|YP_006111478.1| 30S ribosomal protein S1 [Escherichia coli UM146]
gi|386608279|ref|YP_006123765.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|386613185|ref|YP_006132851.1| ribosomal protein RpsA [Escherichia coli UMNK88]
gi|386618514|ref|YP_006138094.1| 30S ribosomal protein S1 [Escherichia coli NA114]
gi|386623317|ref|YP_006143045.1| 30S ribosomal protein S1 [Escherichia coli O7:K1 str. CE10]
gi|386628450|ref|YP_006148170.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i2']
gi|386633370|ref|YP_006153089.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i14']
gi|386638258|ref|YP_006105056.1| 30S ribosomal protein [Escherichia coli ABU 83972]
gi|386702117|ref|YP_006165954.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|386704091|ref|YP_006167938.1| 30S ribosomal protein S1 [Escherichia coli P12b]
gi|386708722|ref|YP_006172443.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|387506022|ref|YP_006158278.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. RM12579]
gi|387606462|ref|YP_006095318.1| 30S ribosomal protein S1 [Escherichia coli 042]
gi|387611451|ref|YP_006114567.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
gi|387616170|ref|YP_006119192.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
gi|387620636|ref|YP_006128263.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|387828885|ref|YP_003348822.1| 30S ribosomal protein S1 [Escherichia coli SE15]
gi|387881523|ref|YP_006311825.1| 30S ribosomal protein S1 [Escherichia coli Xuzhou21]
gi|388476995|ref|YP_489183.1| 30S ribosomal protein S1 [Escherichia coli str. K-12 substr. W3110]
gi|404374235|ref|ZP_10979454.1| 30S ribosomal protein S1 [Escherichia sp. 1_1_43]
gi|407468384|ref|YP_006785174.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482884|ref|YP_006780033.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 2011C-3493]
gi|410483436|ref|YP_006770982.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414575185|ref|ZP_11432391.1| ribosomal protein S1 [Shigella sonnei 3233-85]
gi|415773279|ref|ZP_11485911.1| ribosomal protein S1 [Escherichia coli 3431]
gi|415782204|ref|ZP_11491442.1| ribosomal protein S1 [Escherichia coli EPECa14]
gi|415803306|ref|ZP_11500415.1| ribosomal protein S1 [Escherichia coli E128010]
gi|415809507|ref|ZP_11502277.1| ribosomal protein S1 [Escherichia coli LT-68]
gi|415824683|ref|ZP_11512917.1| ribosomal protein S1 [Escherichia coli OK1180]
gi|415827566|ref|ZP_11514407.1| ribosomal protein S1 [Escherichia coli OK1357]
gi|415837011|ref|ZP_11519261.1| ribosomal protein S1 [Escherichia coli RN587/1]
gi|415850407|ref|ZP_11527282.1| ribosomal protein S1 [Shigella sonnei 53G]
gi|415854018|ref|ZP_11529908.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|415860922|ref|ZP_11534637.1| ribosomal protein S1 [Escherichia coli MS 85-1]
gi|415875820|ref|ZP_11542470.1| ribosomal protein S1 [Escherichia coli MS 79-10]
gi|416275247|ref|ZP_11643902.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
gi|416280203|ref|ZP_11645225.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
gi|416309428|ref|ZP_11655800.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
gi|416317307|ref|ZP_11660348.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
gi|416332066|ref|ZP_11670145.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
gi|416335058|ref|ZP_11671769.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
gi|416340510|ref|ZP_11675463.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
gi|416782018|ref|ZP_11877487.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
gi|416793250|ref|ZP_11882411.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
gi|416804516|ref|ZP_11887271.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
gi|416815639|ref|ZP_11891977.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97]
gi|416825374|ref|ZP_11896562.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
gi|416836218|ref|ZP_11901833.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
gi|416896493|ref|ZP_11926340.1| ribosomal protein S1 [Escherichia coli STEC_7v]
gi|417083412|ref|ZP_11951507.1| 30S ribosomal protein S1 [Escherichia coli cloneA_i1]
gi|417118726|ref|ZP_11969244.1| ribosomal protein S1 [Escherichia coli 1.2741]
gi|417120673|ref|ZP_11970231.1| ribosomal protein S1 [Escherichia coli 97.0246]
gi|417130707|ref|ZP_11975978.1| ribosomal protein S1 [Escherichia coli 5.0588]
gi|417137326|ref|ZP_11981116.1| ribosomal protein S1 [Escherichia coli 97.0259]
gi|417144447|ref|ZP_11986253.1| ribosomal protein S1 [Escherichia coli 1.2264]
gi|417152613|ref|ZP_11991404.1| ribosomal protein S1 [Escherichia coli 96.0497]
gi|417161417|ref|ZP_11997653.1| ribosomal protein S1 [Escherichia coli 99.0741]
gi|417171249|ref|ZP_12001778.1| ribosomal protein S1 [Escherichia coli 3.2608]
gi|417180347|ref|ZP_12008055.1| ribosomal protein S1 [Escherichia coli 93.0624]
gi|417193042|ref|ZP_12014889.1| ribosomal protein S1 [Escherichia coli 4.0522]
gi|417209570|ref|ZP_12020854.1| ribosomal protein S1 [Escherichia coli JB1-95]
gi|417224909|ref|ZP_12028200.1| ribosomal protein S1 [Escherichia coli 96.154]
gi|417230306|ref|ZP_12031892.1| ribosomal protein S1 [Escherichia coli 5.0959]
gi|417241402|ref|ZP_12037348.1| ribosomal protein S1 [Escherichia coli 9.0111]
gi|417251390|ref|ZP_12043155.1| ribosomal protein S1 [Escherichia coli 4.0967]
gi|417261433|ref|ZP_12048921.1| ribosomal protein S1 [Escherichia coli 2.3916]
gi|417267033|ref|ZP_12054394.1| ribosomal protein S1 [Escherichia coli 3.3884]
gi|417274215|ref|ZP_12061555.1| ribosomal protein S1 [Escherichia coli 2.4168]
gi|417276377|ref|ZP_12063707.1| ribosomal protein S1 [Escherichia coli 3.2303]
gi|417282972|ref|ZP_12070270.1| ribosomal protein S1 [Escherichia coli 3003]
gi|417289241|ref|ZP_12076526.1| ribosomal protein S1 [Escherichia coli TW07793]
gi|417289793|ref|ZP_12077076.1| ribosomal protein S1 [Escherichia coli B41]
gi|417295038|ref|ZP_12082294.1| ribosomal protein S1 [Escherichia coli 900105 (10e)]
gi|417307378|ref|ZP_12094248.1| 30S ribosomal protein S1 [Escherichia coli PCN033]
gi|417580179|ref|ZP_12230996.1| ribosomal protein S1 [Escherichia coli STEC_B2F1]
gi|417585850|ref|ZP_12236623.1| ribosomal protein S1 [Escherichia coli STEC_C165-02]
gi|417590634|ref|ZP_12241349.1| ribosomal protein S1 [Escherichia coli 2534-86]
gi|417595928|ref|ZP_12246587.1| ribosomal protein S1 [Escherichia coli 3030-1]
gi|417601293|ref|ZP_12251873.1| ribosomal protein S1 [Escherichia coli STEC_94C]
gi|417607137|ref|ZP_12257656.1| ribosomal protein S1 [Escherichia coli STEC_DG131-3]
gi|417612009|ref|ZP_12262481.1| ribosomal protein S1 [Escherichia coli STEC_EH250]
gi|417617371|ref|ZP_12267801.1| ribosomal protein S1 [Escherichia coli G58-1]
gi|417622334|ref|ZP_12272654.1| ribosomal protein S1 [Escherichia coli STEC_H.1.8]
gi|417627845|ref|ZP_12278092.1| ribosomal protein S1 [Escherichia coli STEC_MHI813]
gi|417633546|ref|ZP_12283765.1| ribosomal protein S1 [Escherichia coli STEC_S1191]
gi|417638244|ref|ZP_12288409.1| ribosomal protein S1 [Escherichia coli TX1999]
gi|417661473|ref|ZP_12311054.1| SSU ribosomal protein S1p [Escherichia coli AA86]
gi|417666119|ref|ZP_12315677.1| ribosomal protein S1 [Escherichia coli STEC_O31]
gi|417672620|ref|ZP_12322083.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
gi|417682650|ref|ZP_12332003.1| ribosomal protein S1 [Shigella boydii 3594-74]
gi|417688721|ref|ZP_12337962.1| ribosomal protein S1 [Shigella boydii 5216-82]
gi|417700974|ref|ZP_12350107.1| ribosomal protein S1 [Shigella flexneri K-218]
gi|417706584|ref|ZP_12355637.1| ribosomal protein S1 [Shigella flexneri VA-6]
gi|417711667|ref|ZP_12360666.1| ribosomal protein S1 [Shigella flexneri K-272]
gi|417716402|ref|ZP_12365331.1| ribosomal protein S1 [Shigella flexneri K-227]
gi|417722187|ref|ZP_12371020.1| ribosomal protein S1 [Shigella flexneri K-304]
gi|417727402|ref|ZP_12376138.1| ribosomal protein S1 [Shigella flexneri K-671]
gi|417732594|ref|ZP_12381260.1| ribosomal protein S1 [Shigella flexneri 2747-71]
gi|417737825|ref|ZP_12386424.1| ribosomal protein S1 [Shigella flexneri 4343-70]
gi|417742465|ref|ZP_12391011.1| ribosomal protein S1 [Shigella flexneri 2930-71]
gi|417754812|ref|ZP_12402903.1| ribosomal protein S1 [Escherichia coli DEC2B]
gi|417804291|ref|ZP_12451322.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. LB226692]
gi|417826999|ref|ZP_12473570.1| ribosomal protein S1 [Shigella flexneri J1713]
gi|417832045|ref|ZP_12478565.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 01-09591]
gi|417864197|ref|ZP_12509244.1| hypothetical protein C22711_1130 [Escherichia coli O104:H4 str.
C227-11]
gi|417943903|ref|ZP_12587149.1| 30S ribosomal protein S1 [Escherichia coli XH140A]
gi|417975234|ref|ZP_12616034.1| 30S ribosomal protein S1 [Escherichia coli XH001]
gi|418043054|ref|ZP_12681229.1| 30S ribosomal protein S1 [Escherichia coli W26]
gi|418254488|ref|ZP_12879279.1| ribosomal protein S1 [Shigella flexneri 6603-63]
gi|418263423|ref|ZP_12884392.1| ribosomal protein S1 [Shigella sonnei str. Moseley]
gi|418301848|ref|ZP_12913642.1| ribosomal protein S1 [Escherichia coli UMNF18]
gi|418941577|ref|ZP_13494900.1| 30S ribosomal protein S1 [Escherichia coli O157:H43 str. T22]
gi|418958752|ref|ZP_13510662.1| 30S ribosomal protein S1 [Escherichia coli J53]
gi|418996018|ref|ZP_13543625.1| ribosomal protein S1 [Escherichia coli DEC1A]
gi|419001177|ref|ZP_13548728.1| ribosomal protein S1 [Escherichia coli DEC1B]
gi|419006667|ref|ZP_13554120.1| ribosomal protein S1 [Escherichia coli DEC1C]
gi|419012512|ref|ZP_13559875.1| ribosomal protein S1 [Escherichia coli DEC1D]
gi|419017510|ref|ZP_13564829.1| ribosomal protein S1 [Escherichia coli DEC1E]
gi|419023103|ref|ZP_13570344.1| ribosomal protein S1 [Escherichia coli DEC2A]
gi|419027971|ref|ZP_13575163.1| ribosomal protein S1 [Escherichia coli DEC2C]
gi|419033808|ref|ZP_13580904.1| ribosomal protein S1 [Escherichia coli DEC2D]
gi|419038779|ref|ZP_13585832.1| ribosomal protein S1 [Escherichia coli DEC2E]
gi|419044202|ref|ZP_13591173.1| ribosomal protein S1 [Escherichia coli DEC3A]
gi|419049565|ref|ZP_13596481.1| ribosomal protein S1 [Escherichia coli DEC3B]
gi|419055646|ref|ZP_13602499.1| ribosomal protein S1 [Escherichia coli DEC3C]
gi|419061217|ref|ZP_13607996.1| ribosomal protein S1 [Escherichia coli DEC3D]
gi|419067491|ref|ZP_13613904.1| ribosomal protein S1 [Escherichia coli DEC3E]
gi|419074166|ref|ZP_13619734.1| ribosomal protein S1 [Escherichia coli DEC3F]
gi|419079327|ref|ZP_13624809.1| ribosomal protein S1 [Escherichia coli DEC4A]
gi|419084966|ref|ZP_13630375.1| ribosomal protein S1 [Escherichia coli DEC4B]
gi|419090928|ref|ZP_13636245.1| ribosomal protein S1 [Escherichia coli DEC4C]
gi|419096899|ref|ZP_13642141.1| ribosomal protein S1 [Escherichia coli DEC4D]
gi|419102704|ref|ZP_13647869.1| ribosomal protein S1 [Escherichia coli DEC4E]
gi|419108208|ref|ZP_13653314.1| ribosomal protein S1 [Escherichia coli DEC4F]
gi|419113836|ref|ZP_13658866.1| ribosomal protein S1 [Escherichia coli DEC5A]
gi|419119471|ref|ZP_13664449.1| ribosomal protein S1 [Escherichia coli DEC5B]
gi|419130720|ref|ZP_13675567.1| ribosomal protein S1 [Escherichia coli DEC5D]
gi|419135449|ref|ZP_13680255.1| ribosomal protein S1 [Escherichia coli DEC5E]
gi|419141435|ref|ZP_13686189.1| ribosomal protein S1 [Escherichia coli DEC6A]
gi|419147267|ref|ZP_13691957.1| ribosomal protein S1 [Escherichia coli DEC6B]
gi|419152834|ref|ZP_13697417.1| ribosomal protein S1 [Escherichia coli DEC6C]
gi|419158253|ref|ZP_13702770.1| ribosomal protein S1 [Escherichia coli DEC6D]
gi|419163222|ref|ZP_13707697.1| ribosomal protein S1 [Escherichia coli DEC6E]
gi|419168899|ref|ZP_13713293.1| ribosomal protein S1 [Escherichia coli DEC7A]
gi|419174492|ref|ZP_13718343.1| ribosomal protein S1 [Escherichia coli DEC7B]
gi|419179882|ref|ZP_13723505.1| ribosomal protein S1 [Escherichia coli DEC7C]
gi|419185441|ref|ZP_13728963.1| ribosomal protein S1 [Escherichia coli DEC7D]
gi|419190636|ref|ZP_13734103.1| ribosomal protein S1 [Escherichia coli DEC7E]
gi|419202089|ref|ZP_13745311.1| ribosomal protein S1 [Escherichia coli DEC8B]
gi|419208065|ref|ZP_13751188.1| ribosomal protein S1 [Escherichia coli DEC8C]
gi|419214610|ref|ZP_13757632.1| ribosomal protein S1 [Escherichia coli DEC8D]
gi|419220211|ref|ZP_13763163.1| ribosomal protein S1 [Escherichia coli DEC8E]
gi|419225702|ref|ZP_13768585.1| ribosomal protein S1 [Escherichia coli DEC9A]
gi|419231433|ref|ZP_13774221.1| ribosomal protein S1 [Escherichia coli DEC9B]
gi|419236888|ref|ZP_13779631.1| ribosomal protein S1 [Escherichia coli DEC9C]
gi|419242417|ref|ZP_13785064.1| ribosomal protein S1 [Escherichia coli DEC9D]
gi|419247939|ref|ZP_13790546.1| ribosomal protein S1 [Escherichia coli DEC9E]
gi|419253676|ref|ZP_13796215.1| ribosomal protein S1 [Escherichia coli DEC10A]
gi|419259806|ref|ZP_13802248.1| ribosomal protein S1 [Escherichia coli DEC10B]
gi|419265681|ref|ZP_13808062.1| ribosomal protein S1 [Escherichia coli DEC10C]
gi|419271419|ref|ZP_13813743.1| ribosomal protein S1 [Escherichia coli DEC10D]
gi|419277185|ref|ZP_13819446.1| ribosomal protein S1 [Escherichia coli DEC10E]
gi|419282901|ref|ZP_13825112.1| ribosomal protein S1 [Escherichia coli DEC10F]
gi|419288493|ref|ZP_13830602.1| ribosomal protein S1 [Escherichia coli DEC11A]
gi|419293800|ref|ZP_13835855.1| ribosomal protein S1 [Escherichia coli DEC11B]
gi|419299211|ref|ZP_13841224.1| ribosomal protein S1 [Escherichia coli DEC11C]
gi|419305502|ref|ZP_13847412.1| ribosomal protein S1 [Escherichia coli DEC11D]
gi|419310540|ref|ZP_13852411.1| ribosomal protein S1 [Escherichia coli DEC11E]
gi|419315827|ref|ZP_13857651.1| ribosomal protein S1 [Escherichia coli DEC12A]
gi|419321775|ref|ZP_13863507.1| ribosomal protein S1 [Escherichia coli DEC12B]
gi|419327906|ref|ZP_13869534.1| ribosomal protein S1 [Escherichia coli DEC12C]
gi|419333428|ref|ZP_13874983.1| ribosomal protein S1 [Escherichia coli DEC12D]
gi|419338745|ref|ZP_13880230.1| ribosomal protein S1 [Escherichia coli DEC12E]
gi|419344539|ref|ZP_13885921.1| ribosomal protein S1 [Escherichia coli DEC13A]
gi|419348977|ref|ZP_13890330.1| ribosomal protein S1 [Escherichia coli DEC13B]
gi|419354070|ref|ZP_13895346.1| ribosomal protein S1 [Escherichia coli DEC13C]
gi|419359363|ref|ZP_13900588.1| ribosomal protein S1 [Escherichia coli DEC13D]
gi|419364294|ref|ZP_13905471.1| ribosomal protein S1 [Escherichia coli DEC13E]
gi|419369226|ref|ZP_13910352.1| ribosomal protein S1 [Escherichia coli DEC14A]
gi|419374674|ref|ZP_13915722.1| ribosomal protein S1 [Escherichia coli DEC14B]
gi|419379970|ref|ZP_13920937.1| ribosomal protein S1 [Escherichia coli DEC14C]
gi|419385317|ref|ZP_13926205.1| ribosomal protein S1 [Escherichia coli DEC14D]
gi|419390368|ref|ZP_13931202.1| ribosomal protein S1 [Escherichia coli DEC15A]
gi|419395527|ref|ZP_13936309.1| ribosomal protein S1 [Escherichia coli DEC15B]
gi|419400883|ref|ZP_13941614.1| ribosomal protein S1 [Escherichia coli DEC15C]
gi|419406094|ref|ZP_13946793.1| ribosomal protein S1 [Escherichia coli DEC15D]
gi|419411561|ref|ZP_13952229.1| ribosomal protein S1 [Escherichia coli DEC15E]
gi|419699767|ref|ZP_14227379.1| 30S ribosomal protein S1 [Escherichia coli SCI-07]
gi|419804113|ref|ZP_14329276.1| 30S ribosomal protein S1 [Escherichia coli AI27]
gi|419809435|ref|ZP_14334320.1| 30S ribosomal protein S1 [Escherichia coli O32:H37 str. P4]
gi|419864950|ref|ZP_14387345.1| 30S ribosomal protein S1 [Escherichia coli O103:H25 str. CVM9340]
gi|419873148|ref|ZP_14395152.1| 30S ribosomal protein S1 [Escherichia coli O103:H2 str. CVM9450]
gi|419873429|ref|ZP_14395420.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9534]
gi|419886070|ref|ZP_14406723.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9545]
gi|419889489|ref|ZP_14409885.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9570]
gi|419894663|ref|ZP_14414559.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9574]
gi|419899728|ref|ZP_14419220.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9942]
gi|419909191|ref|ZP_14427814.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10026]
gi|419911764|ref|ZP_14430233.1| 30S ribosomal protein S1 [Escherichia coli KD1]
gi|419918038|ref|ZP_14436255.1| 30S ribosomal protein S1 [Escherichia coli KD2]
gi|419925677|ref|ZP_14443509.1| 30S ribosomal protein S1 [Escherichia coli 541-15]
gi|419928616|ref|ZP_14446324.1| 30S ribosomal protein S1 [Escherichia coli 541-1]
gi|419936143|ref|ZP_14453169.1| 30S ribosomal protein S1 [Escherichia coli 576-1]
gi|419940911|ref|ZP_14457628.1| 30S ribosomal protein S1 [Escherichia coli 75]
gi|419945116|ref|ZP_14461571.1| 30S ribosomal protein S1 [Escherichia coli HM605]
gi|419952028|ref|ZP_14468205.1| 30S ribosomal protein S1 [Escherichia coli CUMT8]
gi|420088702|ref|ZP_14600562.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9602]
gi|420098124|ref|ZP_14609405.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9634]
gi|420105602|ref|ZP_14616072.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9455]
gi|420107373|ref|ZP_14617717.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9553]
gi|420117598|ref|ZP_14626953.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10021]
gi|420124133|ref|ZP_14633003.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10030]
gi|420129705|ref|ZP_14638231.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10224]
gi|420133138|ref|ZP_14641408.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9952]
gi|420268067|ref|ZP_14770471.1| ribosomal protein S1 [Escherichia coli PA22]
gi|420274011|ref|ZP_14776342.1| ribosomal protein S1 [Escherichia coli PA40]
gi|420279395|ref|ZP_14781660.1| ribosomal protein S1 [Escherichia coli TW06591]
gi|420285481|ref|ZP_14787696.1| ribosomal protein S1 [Escherichia coli TW10246]
gi|420291126|ref|ZP_14793289.1| ribosomal protein S1 [Escherichia coli TW11039]
gi|420296918|ref|ZP_14799010.1| ribosomal protein S1 [Escherichia coli TW09109]
gi|420302925|ref|ZP_14804951.1| ribosomal protein S1 [Escherichia coli TW10119]
gi|420308360|ref|ZP_14810331.1| ribosomal protein S1 [Escherichia coli EC1738]
gi|420313931|ref|ZP_14815836.1| ribosomal protein S1 [Escherichia coli EC1734]
gi|420319444|ref|ZP_14821293.1| ribosomal protein S1 [Shigella flexneri 2850-71]
gi|420326259|ref|ZP_14828011.1| ribosomal protein S1 [Shigella flexneri CCH060]
gi|420330257|ref|ZP_14831948.1| ribosomal protein S1 [Shigella flexneri K-1770]
gi|420335140|ref|ZP_14836756.1| ribosomal protein S1 [Shigella flexneri K-315]
gi|420340642|ref|ZP_14842157.1| ribosomal protein S1 [Shigella flexneri K-404]
gi|420347794|ref|ZP_14849189.1| ribosomal protein S1 [Shigella boydii 965-58]
gi|420351683|ref|ZP_14852867.1| ribosomal protein S1 [Shigella boydii 4444-74]
gi|420357680|ref|ZP_14858686.1| ribosomal protein S1 [Shigella sonnei 3226-85]
gi|420362632|ref|ZP_14863547.1| ribosomal protein S1 [Shigella sonnei 4822-66]
gi|420380909|ref|ZP_14880364.1| ribosomal protein S1 [Shigella dysenteriae 225-75]
gi|420384540|ref|ZP_14883924.1| ribosomal protein S1 [Escherichia coli EPECa12]
gi|420390383|ref|ZP_14889650.1| ribosomal protein S1 [Escherichia coli EPEC C342-62]
gi|421683182|ref|ZP_16122978.1| ribosomal protein S1 [Shigella flexneri 1485-80]
gi|421775852|ref|ZP_16212459.1| 30S ribosomal protein S1 [Escherichia coli AD30]
gi|421813016|ref|ZP_16248740.1| ribosomal protein S1 [Escherichia coli 8.0416]
gi|421817273|ref|ZP_16252827.1| ribosomal protein S1 [Escherichia coli 10.0821]
gi|421822678|ref|ZP_16258114.1| ribosomal protein S1 [Escherichia coli FRIK920]
gi|421829414|ref|ZP_16264741.1| ribosomal protein S1 [Escherichia coli PA7]
gi|422352949|ref|ZP_16433717.1| ribosomal protein S1 [Escherichia coli MS 117-3]
gi|422358660|ref|ZP_16439311.1| ribosomal protein S1 [Escherichia coli MS 110-3]
gi|422366085|ref|ZP_16446560.1| ribosomal protein S1 [Escherichia coli MS 153-1]
gi|422372026|ref|ZP_16452394.1| ribosomal protein S1 [Escherichia coli MS 16-3]
gi|422375728|ref|ZP_16455991.1| ribosomal protein S1 [Escherichia coli MS 60-1]
gi|422378902|ref|ZP_16459105.1| ribosomal protein S1 [Escherichia coli MS 57-2]
gi|422748039|ref|ZP_16801952.1| ribosomal protein S1 [Escherichia coli H252]
gi|422753533|ref|ZP_16807360.1| ribosomal protein S1 [Escherichia coli H263]
gi|422763017|ref|ZP_16816773.1| ribosomal protein S1 [Escherichia coli E1167]
gi|422765484|ref|ZP_16819211.1| ribosomal protein S1 [Escherichia coli E1520]
gi|422770144|ref|ZP_16823835.1| ribosomal protein S1 [Escherichia coli E482]
gi|422775267|ref|ZP_16828923.1| ribosomal protein S1 [Escherichia coli H120]
gi|422782251|ref|ZP_16835036.1| ribosomal protein S1 [Escherichia coli TW10509]
gi|422785503|ref|ZP_16838242.1| ribosomal protein S1 [Escherichia coli H489]
gi|422790390|ref|ZP_16843095.1| ribosomal protein S1 [Escherichia coli TA007]
gi|422800275|ref|ZP_16848773.1| ribosomal protein S1 [Escherichia coli M863]
gi|422819939|ref|ZP_16868149.1| 30S ribosomal protein S1 [Escherichia coli M919]
gi|422828815|ref|ZP_16876985.1| 30S ribosomal protein S1 [Escherichia coli B093]
gi|422833113|ref|ZP_16881180.1| 30S ribosomal protein S1 [Escherichia coli E101]
gi|422839392|ref|ZP_16887364.1| 30S ribosomal protein S1 [Escherichia coli H397]
gi|422958917|ref|ZP_16970848.1| 30S ribosomal protein S1 [Escherichia coli H494]
gi|422970815|ref|ZP_16974327.1| 30S ribosomal protein S1 [Escherichia coli TA124]
gi|422991645|ref|ZP_16982416.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C227-11]
gi|422993587|ref|ZP_16984351.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C236-11]
gi|422998798|ref|ZP_16989554.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 09-7901]
gi|423007259|ref|ZP_16998002.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 04-8351]
gi|423008905|ref|ZP_16999643.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-3677]
gi|423023093|ref|ZP_17013796.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4404]
gi|423028245|ref|ZP_17018938.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4522]
gi|423034079|ref|ZP_17024763.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4623]
gi|423036945|ref|ZP_17027619.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423042064|ref|ZP_17032731.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048754|ref|ZP_17039411.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423052336|ref|ZP_17041144.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423059302|ref|ZP_17048098.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423665438|ref|ZP_17640576.1| ribosomal protein S1 [Escherichia coli PA31]
gi|423701758|ref|ZP_17676217.1| 30S ribosomal protein S1 [Escherichia coli H730]
gi|423708832|ref|ZP_17683210.1| 30S ribosomal protein S1 [Escherichia coli B799]
gi|424075864|ref|ZP_17813202.1| ribosomal protein S1 [Escherichia coli FDA505]
gi|424082212|ref|ZP_17819063.1| ribosomal protein S1 [Escherichia coli FDA517]
gi|424088859|ref|ZP_17825104.1| ribosomal protein S1 [Escherichia coli FRIK1996]
gi|424095063|ref|ZP_17830806.1| ribosomal protein S1 [Escherichia coli FRIK1985]
gi|424101506|ref|ZP_17836648.1| ribosomal protein S1 [Escherichia coli FRIK1990]
gi|424108256|ref|ZP_17842822.1| ribosomal protein S1 [Escherichia coli 93-001]
gi|424116434|ref|ZP_17850298.1| ribosomal protein S1 [Escherichia coli PA3]
gi|424120318|ref|ZP_17854009.1| ribosomal protein S1 [Escherichia coli PA5]
gi|424126547|ref|ZP_17859742.1| ribosomal protein S1 [Escherichia coli PA9]
gi|424132653|ref|ZP_17865444.1| ribosomal protein S1 [Escherichia coli PA10]
gi|424139197|ref|ZP_17871481.1| ribosomal protein S1 [Escherichia coli PA14]
gi|424145637|ref|ZP_17877396.1| ribosomal protein S1 [Escherichia coli PA15]
gi|424151773|ref|ZP_17883017.1| ribosomal protein S1 [Escherichia coli PA24]
gi|424190261|ref|ZP_17888454.1| ribosomal protein S1 [Escherichia coli PA25]
gi|424271831|ref|ZP_17894362.1| ribosomal protein S1 [Escherichia coli PA28]
gi|424425924|ref|ZP_17900089.1| ribosomal protein S1 [Escherichia coli PA32]
gi|424454186|ref|ZP_17905710.1| ribosomal protein S1 [Escherichia coli PA33]
gi|424460518|ref|ZP_17911424.1| ribosomal protein S1 [Escherichia coli PA39]
gi|424466970|ref|ZP_17917148.1| ribosomal protein S1 [Escherichia coli PA41]
gi|424473529|ref|ZP_17923189.1| ribosomal protein S1 [Escherichia coli PA42]
gi|424479460|ref|ZP_17928699.1| ribosomal protein S1 [Escherichia coli TW07945]
gi|424485534|ref|ZP_17934387.1| ribosomal protein S1 [Escherichia coli TW09098]
gi|424491734|ref|ZP_17940060.1| ribosomal protein S1 [Escherichia coli TW09195]
gi|424498749|ref|ZP_17946011.1| ribosomal protein S1 [Escherichia coli EC4203]
gi|424507322|ref|ZP_17953752.1| ribosomal protein S1 [Escherichia coli EC4196]
gi|424511244|ref|ZP_17957451.1| ribosomal protein S1 [Escherichia coli TW14313]
gi|424518769|ref|ZP_17963193.1| ribosomal protein S1 [Escherichia coli TW14301]
gi|424524630|ref|ZP_17968643.1| ribosomal protein S1 [Escherichia coli EC4421]
gi|424530835|ref|ZP_17974450.1| ribosomal protein S1 [Escherichia coli EC4422]
gi|424536809|ref|ZP_17980059.1| ribosomal protein S1 [Escherichia coli EC4013]
gi|424542743|ref|ZP_17985537.1| ribosomal protein S1 [Escherichia coli EC4402]
gi|424549049|ref|ZP_17991237.1| ribosomal protein S1 [Escherichia coli EC4439]
gi|424555294|ref|ZP_17997006.1| ribosomal protein S1 [Escherichia coli EC4436]
gi|424561649|ref|ZP_18002929.1| ribosomal protein S1 [Escherichia coli EC4437]
gi|424567689|ref|ZP_18008592.1| ribosomal protein S1 [Escherichia coli EC4448]
gi|424573874|ref|ZP_18014283.1| ribosomal protein S1 [Escherichia coli EC1845]
gi|424579820|ref|ZP_18019741.1| ribosomal protein S1 [Escherichia coli EC1863]
gi|424749582|ref|ZP_18177679.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424755943|ref|ZP_18183787.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424769358|ref|ZP_18196585.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424837376|ref|ZP_18262013.1| 30S ribosomal protein S1 [Shigella flexneri 5a str. M90T]
gi|425096494|ref|ZP_18499506.1| ribosomal protein S1 [Escherichia coli 3.4870]
gi|425102639|ref|ZP_18505277.1| ribosomal protein S1 [Escherichia coli 5.2239]
gi|425108440|ref|ZP_18510678.1| ribosomal protein S1 [Escherichia coli 6.0172]
gi|425114274|ref|ZP_18516095.1| ribosomal protein S1 [Escherichia coli 8.0566]
gi|425118983|ref|ZP_18520704.1| ribosomal protein S1 [Escherichia coli 8.0569]
gi|425126615|ref|ZP_18527811.1| ribosomal protein S1 [Escherichia coli 8.0586]
gi|425130304|ref|ZP_18531393.1| ribosomal protein S1 [Escherichia coli 8.2524]
gi|425136670|ref|ZP_18537384.1| ribosomal protein S1 [Escherichia coli 10.0833]
gi|425142509|ref|ZP_18542796.1| ribosomal protein S1 [Escherichia coli 10.0869]
gi|425148859|ref|ZP_18548736.1| ribosomal protein S1 [Escherichia coli 88.0221]
gi|425154462|ref|ZP_18554004.1| ribosomal protein S1 [Escherichia coli PA34]
gi|425160910|ref|ZP_18560081.1| ribosomal protein S1 [Escherichia coli FDA506]
gi|425166438|ref|ZP_18565239.1| ribosomal protein S1 [Escherichia coli FDA507]
gi|425172724|ref|ZP_18571113.1| ribosomal protein S1 [Escherichia coli FDA504]
gi|425178614|ref|ZP_18576655.1| ribosomal protein S1 [Escherichia coli FRIK1999]
gi|425184772|ref|ZP_18582385.1| ribosomal protein S1 [Escherichia coli FRIK1997]
gi|425191579|ref|ZP_18588694.1| ribosomal protein S1 [Escherichia coli NE1487]
gi|425197860|ref|ZP_18594501.1| ribosomal protein S1 [Escherichia coli NE037]
gi|425204537|ref|ZP_18600657.1| ribosomal protein S1 [Escherichia coli FRIK2001]
gi|425210245|ref|ZP_18605971.1| ribosomal protein S1 [Escherichia coli PA4]
gi|425216299|ref|ZP_18611604.1| ribosomal protein S1 [Escherichia coli PA23]
gi|425222880|ref|ZP_18617722.1| ribosomal protein S1 [Escherichia coli PA49]
gi|425229105|ref|ZP_18623488.1| ribosomal protein S1 [Escherichia coli PA45]
gi|425235410|ref|ZP_18629364.1| ribosomal protein S1 [Escherichia coli TT12B]
gi|425241427|ref|ZP_18635055.1| ribosomal protein S1 [Escherichia coli MA6]
gi|425247534|ref|ZP_18640729.1| ribosomal protein S1 [Escherichia coli 5905]
gi|425253290|ref|ZP_18646148.1| ribosomal protein S1 [Escherichia coli CB7326]
gi|425259544|ref|ZP_18651903.1| ribosomal protein S1 [Escherichia coli EC96038]
gi|425265749|ref|ZP_18657650.1| ribosomal protein S1 [Escherichia coli 5412]
gi|425271701|ref|ZP_18663194.1| ribosomal protein S1 [Escherichia coli TW15901]
gi|425276852|ref|ZP_18668177.1| ribosomal protein S1 [Escherichia coli ARS4.2123]
gi|425282326|ref|ZP_18673429.1| ribosomal protein S1 [Escherichia coli TW00353]
gi|425287443|ref|ZP_18678366.1| ribosomal protein S1 [Escherichia coli 3006]
gi|425293132|ref|ZP_18683696.1| ribosomal protein S1 [Escherichia coli PA38]
gi|425299260|ref|ZP_18689302.1| ribosomal protein S1 [Escherichia coli 07798]
gi|425305785|ref|ZP_18695496.1| ribosomal protein S1 [Escherichia coli N1]
gi|425309860|ref|ZP_18699314.1| ribosomal protein S1 [Escherichia coli EC1735]
gi|425315785|ref|ZP_18704847.1| ribosomal protein S1 [Escherichia coli EC1736]
gi|425321853|ref|ZP_18710509.1| ribosomal protein S1 [Escherichia coli EC1737]
gi|425328044|ref|ZP_18716248.1| ribosomal protein S1 [Escherichia coli EC1846]
gi|425334229|ref|ZP_18721929.1| ribosomal protein S1 [Escherichia coli EC1847]
gi|425340641|ref|ZP_18727866.1| ribosomal protein S1 [Escherichia coli EC1848]
gi|425346505|ref|ZP_18733296.1| ribosomal protein S1 [Escherichia coli EC1849]
gi|425352741|ref|ZP_18739105.1| ribosomal protein S1 [Escherichia coli EC1850]
gi|425358730|ref|ZP_18744687.1| ribosomal protein S1 [Escherichia coli EC1856]
gi|425364849|ref|ZP_18750372.1| ribosomal protein S1 [Escherichia coli EC1862]
gi|425371292|ref|ZP_18756238.1| ribosomal protein S1 [Escherichia coli EC1864]
gi|425377822|ref|ZP_18762188.1| ribosomal protein S1 [Escherichia coli EC1865]
gi|425384083|ref|ZP_18767946.1| ribosomal protein S1 [Escherichia coli EC1866]
gi|425390776|ref|ZP_18774215.1| ribosomal protein S1 [Escherichia coli EC1868]
gi|425396892|ref|ZP_18779921.1| ribosomal protein S1 [Escherichia coli EC1869]
gi|425402879|ref|ZP_18785470.1| ribosomal protein S1 [Escherichia coli EC1870]
gi|425409431|ref|ZP_18791568.1| ribosomal protein S1 [Escherichia coli NE098]
gi|425415700|ref|ZP_18797320.1| ribosomal protein S1 [Escherichia coli FRIK523]
gi|425421506|ref|ZP_18802713.1| ribosomal protein S1 [Escherichia coli 0.1288]
gi|425426833|ref|ZP_18807872.1| ribosomal protein S1 [Escherichia coli 0.1304]
gi|427804067|ref|ZP_18971134.1| 30S ribosomal subunit protein S1 [Escherichia coli chi7122]
gi|427808649|ref|ZP_18975714.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|428945531|ref|ZP_19018143.1| ribosomal protein S1 [Escherichia coli 88.1467]
gi|428951664|ref|ZP_19023769.1| ribosomal protein S1 [Escherichia coli 88.1042]
gi|428957525|ref|ZP_19029191.1| ribosomal protein S1 [Escherichia coli 89.0511]
gi|428963866|ref|ZP_19035027.1| ribosomal protein S1 [Escherichia coli 90.0091]
gi|428970075|ref|ZP_19040688.1| ribosomal protein S1 [Escherichia coli 90.0039]
gi|428976431|ref|ZP_19046584.1| ribosomal protein S1 [Escherichia coli 90.2281]
gi|428982151|ref|ZP_19051868.1| ribosomal protein S1 [Escherichia coli 93.0055]
gi|428988455|ref|ZP_19057722.1| ribosomal protein S1 [Escherichia coli 93.0056]
gi|428994257|ref|ZP_19063148.1| ribosomal protein S1 [Escherichia coli 94.0618]
gi|429000398|ref|ZP_19068882.1| ribosomal protein S1 [Escherichia coli 95.0183]
gi|429006585|ref|ZP_19074469.1| ribosomal protein S1 [Escherichia coli 95.1288]
gi|429012914|ref|ZP_19080149.1| ribosomal protein S1 [Escherichia coli 95.0943]
gi|429019138|ref|ZP_19085903.1| ribosomal protein S1 [Escherichia coli 96.0428]
gi|429024835|ref|ZP_19091224.1| ribosomal protein S1 [Escherichia coli 96.0427]
gi|429033367|ref|ZP_19098909.1| ribosomal protein S1 [Escherichia coli 96.0939]
gi|429039468|ref|ZP_19104601.1| ribosomal protein S1 [Escherichia coli 96.0932]
gi|429043253|ref|ZP_19108232.1| ribosomal protein S1 [Escherichia coli 96.0107]
gi|429049019|ref|ZP_19113670.1| ribosomal protein S1 [Escherichia coli 97.0003]
gi|429053240|ref|ZP_19117776.1| ribosomal protein S1 [Escherichia coli 97.1742]
gi|429060059|ref|ZP_19124189.1| ribosomal protein S1 [Escherichia coli 97.0007]
gi|429065585|ref|ZP_19129424.1| ribosomal protein S1 [Escherichia coli 99.0672]
gi|429072085|ref|ZP_19135431.1| ribosomal protein S1 [Escherichia coli 99.0678]
gi|429077413|ref|ZP_19140620.1| ribosomal protein S1 [Escherichia coli 99.0713]
gi|429723136|ref|ZP_19258025.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429775310|ref|ZP_19307308.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02030]
gi|429780499|ref|ZP_19312448.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429784550|ref|ZP_19316459.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02092]
gi|429789887|ref|ZP_19321759.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02093]
gi|429796117|ref|ZP_19327940.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02281]
gi|429802042|ref|ZP_19333817.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02318]
gi|429805674|ref|ZP_19337418.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02913]
gi|429811270|ref|ZP_19342969.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03439]
gi|429816621|ref|ZP_19348277.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-04080]
gi|429821831|ref|ZP_19353442.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03943]
gi|429824656|ref|ZP_19356126.1| ribosomal protein S1 [Escherichia coli 96.0109]
gi|429831017|ref|ZP_19361826.1| ribosomal protein S1 [Escherichia coli 97.0010]
gi|429907498|ref|ZP_19373466.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911700|ref|ZP_19377656.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9941]
gi|429917534|ref|ZP_19383474.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429922572|ref|ZP_19388493.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429923425|ref|ZP_19389341.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429932320|ref|ZP_19398214.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933922|ref|ZP_19399812.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429939581|ref|ZP_19405455.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429947223|ref|ZP_19413078.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949855|ref|ZP_19415703.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429958133|ref|ZP_19423962.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0466]
gi|432352875|ref|ZP_19596158.1| 30S ribosomal protein S1 [Escherichia coli KTE2]
gi|432357245|ref|ZP_19600489.1| 30S ribosomal protein S1 [Escherichia coli KTE4]
gi|432361670|ref|ZP_19604854.1| 30S ribosomal protein S1 [Escherichia coli KTE5]
gi|432368968|ref|ZP_19612069.1| 30S ribosomal protein S1 [Escherichia coli KTE10]
gi|432376022|ref|ZP_19619030.1| 30S ribosomal protein S1 [Escherichia coli KTE12]
gi|432380541|ref|ZP_19623493.1| 30S ribosomal protein S1 [Escherichia coli KTE15]
gi|432386409|ref|ZP_19629305.1| 30S ribosomal protein S1 [Escherichia coli KTE16]
gi|432390942|ref|ZP_19633800.1| 30S ribosomal protein S1 [Escherichia coli KTE21]
gi|432396791|ref|ZP_19639576.1| 30S ribosomal protein S1 [Escherichia coli KTE25]
gi|432401108|ref|ZP_19643862.1| 30S ribosomal protein S1 [Escherichia coli KTE26]
gi|432405723|ref|ZP_19648443.1| 30S ribosomal protein S1 [Escherichia coli KTE28]
gi|432410908|ref|ZP_19653589.1| 30S ribosomal protein S1 [Escherichia coli KTE39]
gi|432415897|ref|ZP_19658521.1| 30S ribosomal protein S1 [Escherichia coli KTE44]
gi|432421026|ref|ZP_19663581.1| 30S ribosomal protein S1 [Escherichia coli KTE178]
gi|432425165|ref|ZP_19667680.1| 30S ribosomal protein S1 [Escherichia coli KTE181]
gi|432430956|ref|ZP_19673399.1| 30S ribosomal protein S1 [Escherichia coli KTE187]
gi|432435484|ref|ZP_19677883.1| 30S ribosomal protein S1 [Escherichia coli KTE188]
gi|432440291|ref|ZP_19682640.1| 30S ribosomal protein S1 [Escherichia coli KTE189]
gi|432445398|ref|ZP_19687704.1| 30S ribosomal protein S1 [Escherichia coli KTE191]
gi|432453684|ref|ZP_19695921.1| 30S ribosomal protein S1 [Escherichia coli KTE193]
gi|432455771|ref|ZP_19697970.1| 30S ribosomal protein S1 [Escherichia coli KTE201]
gi|432459937|ref|ZP_19702093.1| 30S ribosomal protein S1 [Escherichia coli KTE204]
gi|432470275|ref|ZP_19712327.1| 30S ribosomal protein S1 [Escherichia coli KTE206]
gi|432475027|ref|ZP_19717033.1| 30S ribosomal protein S1 [Escherichia coli KTE208]
gi|432480286|ref|ZP_19722247.1| 30S ribosomal protein S1 [Escherichia coli KTE210]
gi|432484604|ref|ZP_19726524.1| 30S ribosomal protein S1 [Escherichia coli KTE212]
gi|432488559|ref|ZP_19730443.1| 30S ribosomal protein S1 [Escherichia coli KTE213]
gi|432494709|ref|ZP_19736525.1| 30S ribosomal protein S1 [Escherichia coli KTE214]
gi|432499172|ref|ZP_19740944.1| 30S ribosomal protein S1 [Escherichia coli KTE216]
gi|432503548|ref|ZP_19745283.1| 30S ribosomal protein S1 [Escherichia coli KTE220]
gi|432513153|ref|ZP_19750388.1| 30S ribosomal protein S1 [Escherichia coli KTE224]
gi|432521607|ref|ZP_19758762.1| 30S ribosomal protein S1 [Escherichia coli KTE228]
gi|432522993|ref|ZP_19760130.1| 30S ribosomal protein S1 [Escherichia coli KTE230]
gi|432530245|ref|ZP_19767285.1| 30S ribosomal protein S1 [Escherichia coli KTE233]
gi|432533138|ref|ZP_19770129.1| 30S ribosomal protein S1 [Escherichia coli KTE234]
gi|432536972|ref|ZP_19773889.1| 30S ribosomal protein S1 [Escherichia coli KTE235]
gi|432542295|ref|ZP_19779151.1| 30S ribosomal protein S1 [Escherichia coli KTE236]
gi|432547765|ref|ZP_19784552.1| 30S ribosomal protein S1 [Escherichia coli KTE237]
gi|432552911|ref|ZP_19789640.1| 30S ribosomal protein S1 [Escherichia coli KTE47]
gi|432557992|ref|ZP_19794680.1| 30S ribosomal protein S1 [Escherichia coli KTE49]
gi|432562910|ref|ZP_19799530.1| 30S ribosomal protein S1 [Escherichia coli KTE51]
gi|432567922|ref|ZP_19804444.1| 30S ribosomal protein S1 [Escherichia coli KTE53]
gi|432572892|ref|ZP_19809382.1| 30S ribosomal protein S1 [Escherichia coli KTE55]
gi|432579608|ref|ZP_19816039.1| 30S ribosomal protein S1 [Escherichia coli KTE56]
gi|432587179|ref|ZP_19823546.1| 30S ribosomal protein S1 [Escherichia coli KTE58]
gi|432591959|ref|ZP_19828286.1| 30S ribosomal protein S1 [Escherichia coli KTE60]
gi|432596793|ref|ZP_19833074.1| 30S ribosomal protein S1 [Escherichia coli KTE62]
gi|432601448|ref|ZP_19837695.1| 30S ribosomal protein S1 [Escherichia coli KTE66]
gi|432606726|ref|ZP_19842919.1| 30S ribosomal protein S1 [Escherichia coli KTE67]
gi|432610584|ref|ZP_19846755.1| 30S ribosomal protein S1 [Escherichia coli KTE72]
gi|432615779|ref|ZP_19851905.1| 30S ribosomal protein S1 [Escherichia coli KTE75]
gi|432621049|ref|ZP_19857090.1| 30S ribosomal protein S1 [Escherichia coli KTE76]
gi|432626516|ref|ZP_19862497.1| 30S ribosomal protein S1 [Escherichia coli KTE77]
gi|432630533|ref|ZP_19866477.1| 30S ribosomal protein S1 [Escherichia coli KTE80]
gi|432636184|ref|ZP_19872066.1| 30S ribosomal protein S1 [Escherichia coli KTE81]
gi|432640135|ref|ZP_19875974.1| 30S ribosomal protein S1 [Escherichia coli KTE83]
gi|432645341|ref|ZP_19881140.1| 30S ribosomal protein S1 [Escherichia coli KTE86]
gi|432650368|ref|ZP_19886128.1| 30S ribosomal protein S1 [Escherichia coli KTE87]
gi|432655179|ref|ZP_19890890.1| 30S ribosomal protein S1 [Escherichia coli KTE93]
gi|432660138|ref|ZP_19895788.1| 30S ribosomal protein S1 [Escherichia coli KTE111]
gi|432665204|ref|ZP_19900788.1| 30S ribosomal protein S1 [Escherichia coli KTE116]
gi|432669856|ref|ZP_19905396.1| 30S ribosomal protein S1 [Escherichia coli KTE119]
gi|432673909|ref|ZP_19909397.1| 30S ribosomal protein S1 [Escherichia coli KTE142]
gi|432679403|ref|ZP_19914797.1| 30S ribosomal protein S1 [Escherichia coli KTE143]
gi|432690835|ref|ZP_19926074.1| 30S ribosomal protein S1 [Escherichia coli KTE161]
gi|432693659|ref|ZP_19928870.1| 30S ribosomal protein S1 [Escherichia coli KTE162]
gi|432698265|ref|ZP_19933431.1| 30S ribosomal protein S1 [Escherichia coli KTE169]
gi|432703482|ref|ZP_19938601.1| 30S ribosomal protein S1 [Escherichia coli KTE171]
gi|432709776|ref|ZP_19944841.1| 30S ribosomal protein S1 [Escherichia coli KTE6]
gi|432712565|ref|ZP_19947614.1| 30S ribosomal protein S1 [Escherichia coli KTE8]
gi|432717965|ref|ZP_19952949.1| 30S ribosomal protein S1 [Escherichia coli KTE9]
gi|432722418|ref|ZP_19957341.1| 30S ribosomal protein S1 [Escherichia coli KTE17]
gi|432727006|ref|ZP_19961887.1| 30S ribosomal protein S1 [Escherichia coli KTE18]
gi|432731624|ref|ZP_19966460.1| 30S ribosomal protein S1 [Escherichia coli KTE45]
gi|432736411|ref|ZP_19971182.1| 30S ribosomal protein S1 [Escherichia coli KTE42]
gi|432740692|ref|ZP_19975413.1| 30S ribosomal protein S1 [Escherichia coli KTE23]
gi|432744883|ref|ZP_19979582.1| 30S ribosomal protein S1 [Escherichia coli KTE43]
gi|432749392|ref|ZP_19984004.1| 30S ribosomal protein S1 [Escherichia coli KTE29]
gi|432753666|ref|ZP_19988232.1| 30S ribosomal protein S1 [Escherichia coli KTE22]
gi|432758702|ref|ZP_19993202.1| 30S ribosomal protein S1 [Escherichia coli KTE46]
gi|432764233|ref|ZP_19998681.1| 30S ribosomal protein S1 [Escherichia coli KTE48]
gi|432769761|ref|ZP_20004113.1| 30S ribosomal protein S1 [Escherichia coli KTE50]
gi|432774110|ref|ZP_20008394.1| 30S ribosomal protein S1 [Escherichia coli KTE54]
gi|432777806|ref|ZP_20012056.1| 30S ribosomal protein S1 [Escherichia coli KTE59]
gi|432782792|ref|ZP_20016976.1| 30S ribosomal protein S1 [Escherichia coli KTE63]
gi|432786595|ref|ZP_20020759.1| 30S ribosomal protein S1 [Escherichia coli KTE65]
gi|432792130|ref|ZP_20026219.1| 30S ribosomal protein S1 [Escherichia coli KTE78]
gi|432798093|ref|ZP_20032117.1| 30S ribosomal protein S1 [Escherichia coli KTE79]
gi|432801232|ref|ZP_20035216.1| 30S ribosomal protein S1 [Escherichia coli KTE84]
gi|432805037|ref|ZP_20038978.1| 30S ribosomal protein S1 [Escherichia coli KTE91]
gi|432813016|ref|ZP_20046861.1| 30S ribosomal protein S1 [Escherichia coli KTE101]
gi|432814560|ref|ZP_20048350.1| 30S ribosomal protein S1 [Escherichia coli KTE115]
gi|432820171|ref|ZP_20053884.1| 30S ribosomal protein S1 [Escherichia coli KTE118]
gi|432830887|ref|ZP_20064469.1| 30S ribosomal protein S1 [Escherichia coli KTE135]
gi|432833992|ref|ZP_20067534.1| 30S ribosomal protein S1 [Escherichia coli KTE136]
gi|432838576|ref|ZP_20072065.1| 30S ribosomal protein S1 [Escherichia coli KTE140]
gi|432843282|ref|ZP_20076547.1| 30S ribosomal protein S1 [Escherichia coli KTE141]
gi|432849368|ref|ZP_20080590.1| 30S ribosomal protein S1 [Escherichia coli KTE144]
gi|432860711|ref|ZP_20085795.1| 30S ribosomal protein S1 [Escherichia coli KTE146]
gi|432874085|ref|ZP_20093222.1| 30S ribosomal protein S1 [Escherichia coli KTE147]
gi|432880646|ref|ZP_20097181.1| 30S ribosomal protein S1 [Escherichia coli KTE154]
gi|432885402|ref|ZP_20099923.1| 30S ribosomal protein S1 [Escherichia coli KTE158]
gi|432893643|ref|ZP_20105655.1| 30S ribosomal protein S1 [Escherichia coli KTE165]
gi|432897838|ref|ZP_20108669.1| 30S ribosomal protein S1 [Escherichia coli KTE192]
gi|432903547|ref|ZP_20112963.1| 30S ribosomal protein S1 [Escherichia coli KTE194]
gi|432911477|ref|ZP_20117752.1| 30S ribosomal protein S1 [Escherichia coli KTE190]
gi|432918129|ref|ZP_20122534.1| 30S ribosomal protein S1 [Escherichia coli KTE173]
gi|432925419|ref|ZP_20127448.1| 30S ribosomal protein S1 [Escherichia coli KTE175]
gi|432933476|ref|ZP_20133144.1| 30S ribosomal protein S1 [Escherichia coli KTE184]
gi|432942994|ref|ZP_20140118.1| 30S ribosomal protein S1 [Escherichia coli KTE183]
gi|432946217|ref|ZP_20141846.1| 30S ribosomal protein S1 [Escherichia coli KTE196]
gi|432954210|ref|ZP_20146329.1| 30S ribosomal protein S1 [Escherichia coli KTE197]
gi|432960488|ref|ZP_20150608.1| 30S ribosomal protein S1 [Escherichia coli KTE202]
gi|432967008|ref|ZP_20155924.1| 30S ribosomal protein S1 [Escherichia coli KTE203]
gi|432971073|ref|ZP_20159948.1| 30S ribosomal protein S1 [Escherichia coli KTE207]
gi|432977565|ref|ZP_20166388.1| 30S ribosomal protein S1 [Escherichia coli KTE209]
gi|432980380|ref|ZP_20169158.1| 30S ribosomal protein S1 [Escherichia coli KTE211]
gi|432984541|ref|ZP_20173277.1| 30S ribosomal protein S1 [Escherichia coli KTE215]
gi|432990005|ref|ZP_20178671.1| 30S ribosomal protein S1 [Escherichia coli KTE217]
gi|432994637|ref|ZP_20183251.1| 30S ribosomal protein S1 [Escherichia coli KTE218]
gi|432999055|ref|ZP_20187593.1| 30S ribosomal protein S1 [Escherichia coli KTE223]
gi|433004379|ref|ZP_20192817.1| 30S ribosomal protein S1 [Escherichia coli KTE227]
gi|433011634|ref|ZP_20200038.1| 30S ribosomal protein S1 [Escherichia coli KTE229]
gi|433013129|ref|ZP_20201503.1| 30S ribosomal protein S1 [Escherichia coli KTE104]
gi|433017888|ref|ZP_20206148.1| 30S ribosomal protein S1 [Escherichia coli KTE105]
gi|433022766|ref|ZP_20210778.1| 30S ribosomal protein S1 [Escherichia coli KTE106]
gi|433027936|ref|ZP_20215805.1| 30S ribosomal protein S1 [Escherichia coli KTE109]
gi|433032415|ref|ZP_20220187.1| 30S ribosomal protein S1 [Escherichia coli KTE112]
gi|433037953|ref|ZP_20225565.1| 30S ribosomal protein S1 [Escherichia coli KTE113]
gi|433042421|ref|ZP_20229941.1| 30S ribosomal protein S1 [Escherichia coli KTE117]
gi|433047049|ref|ZP_20234457.1| 30S ribosomal protein S1 [Escherichia coli KTE120]
gi|433052290|ref|ZP_20239514.1| 30S ribosomal protein S1 [Escherichia coli KTE122]
gi|433057200|ref|ZP_20244282.1| 30S ribosomal protein S1 [Escherichia coli KTE124]
gi|433062159|ref|ZP_20249113.1| 30S ribosomal protein S1 [Escherichia coli KTE125]
gi|433067170|ref|ZP_20253993.1| 30S ribosomal protein S1 [Escherichia coli KTE128]
gi|433077067|ref|ZP_20263628.1| 30S ribosomal protein S1 [Escherichia coli KTE131]
gi|433081838|ref|ZP_20268312.1| 30S ribosomal protein S1 [Escherichia coli KTE133]
gi|433086517|ref|ZP_20272911.1| 30S ribosomal protein S1 [Escherichia coli KTE137]
gi|433091240|ref|ZP_20277534.1| 30S ribosomal protein S1 [Escherichia coli KTE138]
gi|433095803|ref|ZP_20282013.1| 30S ribosomal protein S1 [Escherichia coli KTE139]
gi|433100422|ref|ZP_20286529.1| 30S ribosomal protein S1 [Escherichia coli KTE145]
gi|433105024|ref|ZP_20291040.1| 30S ribosomal protein S1 [Escherichia coli KTE148]
gi|433110230|ref|ZP_20296102.1| 30S ribosomal protein S1 [Escherichia coli KTE150]
gi|433114792|ref|ZP_20300605.1| 30S ribosomal protein S1 [Escherichia coli KTE153]
gi|433124455|ref|ZP_20310040.1| 30S ribosomal protein S1 [Escherichia coli KTE160]
gi|433129264|ref|ZP_20314730.1| 30S ribosomal protein S1 [Escherichia coli KTE163]
gi|433134088|ref|ZP_20319459.1| 30S ribosomal protein S1 [Escherichia coli KTE166]
gi|433138515|ref|ZP_20323797.1| 30S ribosomal protein S1 [Escherichia coli KTE167]
gi|433143535|ref|ZP_20328699.1| 30S ribosomal protein S1 [Escherichia coli KTE168]
gi|433148298|ref|ZP_20333361.1| 30S ribosomal protein S1 [Escherichia coli KTE174]
gi|433153006|ref|ZP_20337971.1| 30S ribosomal protein S1 [Escherichia coli KTE176]
gi|433157900|ref|ZP_20342763.1| 30S ribosomal protein S1 [Escherichia coli KTE177]
gi|433162749|ref|ZP_20347508.1| 30S ribosomal protein S1 [Escherichia coli KTE179]
gi|433167760|ref|ZP_20352425.1| 30S ribosomal protein S1 [Escherichia coli KTE180]
gi|433172741|ref|ZP_20357293.1| 30S ribosomal protein S1 [Escherichia coli KTE232]
gi|433177455|ref|ZP_20361902.1| 30S ribosomal protein S1 [Escherichia coli KTE82]
gi|433187698|ref|ZP_20371815.1| 30S ribosomal protein S1 [Escherichia coli KTE88]
gi|433192904|ref|ZP_20376915.1| 30S ribosomal protein S1 [Escherichia coli KTE90]
gi|433197515|ref|ZP_20381436.1| 30S ribosomal protein S1 [Escherichia coli KTE94]
gi|433202457|ref|ZP_20386254.1| 30S ribosomal protein S1 [Escherichia coli KTE95]
gi|433207025|ref|ZP_20390720.1| 30S ribosomal protein S1 [Escherichia coli KTE97]
gi|433211776|ref|ZP_20395387.1| 30S ribosomal protein S1 [Escherichia coli KTE99]
gi|433322245|ref|ZP_20399729.1| 30S ribosomal protein S1 [Escherichia coli J96]
gi|442595295|ref|ZP_21013144.1| SSU ribosomal protein S1p [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|442599784|ref|ZP_21017489.1| SSU ribosomal protein S1p [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|442606461|ref|ZP_21021261.1| SSU ribosomal protein S1p [Escherichia coli Nissle 1917]
gi|443617026|ref|YP_007380882.1| 30S ribosomal protein S1 [Escherichia coli APEC O78]
gi|444923362|ref|ZP_21243039.1| ribosomal protein S1 [Escherichia coli 09BKT078844]
gi|444929651|ref|ZP_21248790.1| ribosomal protein S1 [Escherichia coli 99.0814]
gi|444936752|ref|ZP_21255547.1| ribosomal protein S1 [Escherichia coli 99.0815]
gi|444942381|ref|ZP_21260917.1| ribosomal protein S1 [Escherichia coli 99.0816]
gi|444946123|ref|ZP_21264532.1| ribosomal protein S1 [Escherichia coli 99.0839]
gi|444951685|ref|ZP_21269896.1| ribosomal protein S1 [Escherichia coli 99.0848]
gi|444957153|ref|ZP_21275137.1| ribosomal protein S1 [Escherichia coli 99.1753]
gi|444962454|ref|ZP_21280188.1| ribosomal protein S1 [Escherichia coli 99.1775]
gi|444968162|ref|ZP_21285628.1| ribosomal protein S1 [Escherichia coli 99.1793]
gi|444973659|ref|ZP_21290926.1| ribosomal protein S1 [Escherichia coli 99.1805]
gi|444979336|ref|ZP_21296320.1| ribosomal protein S1 [Escherichia coli ATCC 700728]
gi|444984497|ref|ZP_21301356.1| ribosomal protein S1 [Escherichia coli PA11]
gi|444989744|ref|ZP_21306474.1| ribosomal protein S1 [Escherichia coli PA19]
gi|444996759|ref|ZP_21313270.1| ribosomal protein S1 [Escherichia coli PA13]
gi|445000622|ref|ZP_21317075.1| ribosomal protein S1 [Escherichia coli PA2]
gi|445006060|ref|ZP_21322390.1| ribosomal protein S1 [Escherichia coli PA47]
gi|445011172|ref|ZP_21327356.1| ribosomal protein S1 [Escherichia coli PA48]
gi|445018724|ref|ZP_21334700.1| ribosomal protein S1 [Escherichia coli PA8]
gi|445022440|ref|ZP_21338354.1| ribosomal protein S1 [Escherichia coli 7.1982]
gi|445027709|ref|ZP_21343474.1| ribosomal protein S1 [Escherichia coli 99.1781]
gi|445033201|ref|ZP_21348812.1| ribosomal protein S1 [Escherichia coli 99.1762]
gi|445038888|ref|ZP_21354349.1| ribosomal protein S1 [Escherichia coli PA35]
gi|445044193|ref|ZP_21359519.1| ribosomal protein S1 [Escherichia coli 3.4880]
gi|445049687|ref|ZP_21364839.1| ribosomal protein S1 [Escherichia coli 95.0083]
gi|445055346|ref|ZP_21370285.1| ribosomal protein S1 [Escherichia coli 99.0670]
gi|450187214|ref|ZP_21889735.1| 30S ribosomal protein S1 [Escherichia coli SEPT362]
gi|450212785|ref|ZP_21894638.1| 30S ribosomal protein S1 [Escherichia coli O08]
gi|450241046|ref|ZP_21899492.1| 30S ribosomal protein S1 [Escherichia coli S17]
gi|452967505|ref|ZP_21965732.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EC4009]
gi|84028225|sp|P0AG69.1|RS1_ECO57 RecName: Full=30S ribosomal protein S1
gi|84028226|sp|P0AG68.1|RS1_ECOL6 RecName: Full=30S ribosomal protein S1
gi|84028227|sp|P0AG67.1|RS1_ECOLI RecName: Full=30S ribosomal protein S1
gi|84028228|sp|P0AG70.1|RS1_SHIFL RecName: Full=30S ribosomal protein S1
gi|12514077|gb|AAG55396.1|AE005280_7 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
EDL933]
gi|26107336|gb|AAN79519.1|AE016758_123 30S ribosomal protein S1 [Escherichia coli CFT073]
gi|1651439|dbj|BAA35655.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K12 substr.
W3110]
gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MG1655]
gi|13360453|dbj|BAB34417.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
Sakai]
gi|24051180|gb|AAN42537.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301]
gi|30040692|gb|AAP16423.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 2457T]
gi|73854945|gb|AAZ87652.1| 30S ribosomal subunit protein S1 [Shigella sonnei Ss046]
gi|81246061|gb|ABB66769.1| 30S ribosomal subunit protein S1 [Shigella boydii Sb227]
gi|91071586|gb|ABE06467.1| 30S ribosomal subunit protein S1 [Escherichia coli UTI89]
gi|110342700|gb|ABG68937.1| 30S ribosomal protein S1 [Escherichia coli 536]
gi|110614467|gb|ABF03134.1| 30S ribosomal subunit protein S1 [Shigella flexneri 5 str. 8401]
gi|115512253|gb|ABJ00328.1| RpsA [Escherichia coli APEC O1]
gi|157066113|gb|ABV05368.1| ribosomal protein S1 [Escherichia coli HS]
gi|157078847|gb|ABV18555.1| ribosomal protein S1 [Escherichia coli E24377A]
gi|169755615|gb|ACA78314.1| ribosomal protein S1 [Escherichia coli ATCC 8739]
gi|169888404|gb|ACB02111.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. DH10B]
gi|170121818|gb|EDS90749.1| ribosomal protein S1 [Escherichia albertii TW07627]
gi|170520409|gb|ACB18587.1| ribosomal protein S1 [Escherichia coli SMS-3-5]
gi|187430111|gb|ACD09385.1| ribosomal protein S1 [Shigella boydii CDC 3083-94]
gi|188014741|gb|EDU52863.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
gi|188488831|gb|EDU63934.1| ribosomal protein S1 [Escherichia coli 53638]
gi|189355943|gb|EDU74362.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
gi|189366807|gb|EDU85223.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
gi|189372760|gb|EDU91176.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
gi|189376455|gb|EDU94871.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
gi|190907581|gb|EDV67176.1| ribosomal protein S1 [Escherichia coli F11]
gi|192927716|gb|EDV82331.1| ribosomal protein S1 [Escherichia coli E22]
gi|192955954|gb|EDV86422.1| ribosomal protein S1 [Escherichia coli E110019]
gi|194413618|gb|EDX29899.1| ribosomal protein S1 [Escherichia coli B171]
gi|194422382|gb|EDX38382.1| ribosomal protein S1 [Escherichia coli 101-1]
gi|208732123|gb|EDZ80811.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
gi|208738290|gb|EDZ85973.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
gi|209158872|gb|ACI36305.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
gi|209774868|gb|ACI85746.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774870|gb|ACI85747.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774872|gb|ACI85748.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774874|gb|ACI85749.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774876|gb|ACI85750.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209911420|dbj|BAG76494.1| 30S ribosomal protein S1 [Escherichia coli SE11]
gi|215264108|emb|CAS08452.1| 30S ribosomal subunit protein S1 [Escherichia coli O127:H6 str.
E2348/69]
gi|217322591|gb|EEC31015.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
gi|218351116|emb|CAU96820.1| 30S ribosomal subunit protein S1 [Escherichia coli 55989]
gi|218360266|emb|CAQ97816.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI1]
gi|218364585|emb|CAR02271.1| 30S ribosomal subunit protein S1 [Escherichia coli S88]
gi|218370556|emb|CAR18363.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI39]
gi|218426315|emb|CAR07140.1| 30S ribosomal subunit protein S1 [Escherichia coli ED1a]
gi|218431435|emb|CAR12313.1| 30S ribosomal subunit protein S1 [Escherichia coli UMN026]
gi|222032642|emb|CAP75381.1| 30S ribosomal protein S1 [Escherichia coli LF82]
gi|226898311|gb|EEH84570.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
gi|227838876|gb|EEJ49342.1| 30S ribosomal protein S1 [Escherichia coli 83972]
gi|238859783|gb|ACR61781.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
gi|242376726|emb|CAQ31439.1| 30S ribosomal subunit protein S1, subunit of 30S ribosomal subunit
and ribosome [Escherichia coli BL21(DE3)]
gi|253325104|gb|ACT29706.1| ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972926|gb|ACT38597.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
gi|253977140|gb|ACT42810.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|254591510|gb|ACT70871.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
TW14359]
gi|257752851|dbj|BAI24353.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
11368]
gi|257758308|dbj|BAI29805.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
12009]
gi|257763439|dbj|BAI34934.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
11128]
gi|260449943|gb|ACX40365.1| ribosomal protein S1 [Escherichia coli DH1]
gi|281178042|dbj|BAI54372.1| 30S ribosomal protein S1 [Escherichia coli SE15]
gi|281600271|gb|ADA73255.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
gi|284920762|emb|CBG33825.1| 30S ribosomal protein S1 [Escherichia coli 042]
gi|290761785|gb|ADD55746.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
gi|291324027|gb|EFE63449.1| 30S ribosomal protein S1 [Escherichia coli B088]
gi|291428802|gb|EFF01827.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
gi|291434249|gb|EFF07222.1| 30S ribosomal protein S1 [Escherichia coli B185]
gi|291469756|gb|EFF12240.1| 30S ribosomal protein S1 [Escherichia coli B354]
gi|294493114|gb|ADE91870.1| ribosomal protein S1 [Escherichia coli IHE3034]
gi|298279694|gb|EFI21202.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
gi|299881246|gb|EFI89457.1| ribosomal protein S1 [Escherichia coli MS 196-1]
gi|300300289|gb|EFJ56674.1| ribosomal protein S1 [Escherichia coli MS 185-1]
gi|300306973|gb|EFJ61493.1| ribosomal protein S1 [Escherichia coli MS 200-1]
gi|300317664|gb|EFJ67448.1| ribosomal protein S1 [Escherichia coli MS 175-1]
gi|300354952|gb|EFJ70822.1| ribosomal protein S1 [Escherichia coli MS 198-1]
gi|300397275|gb|EFJ80813.1| ribosomal protein S1 [Escherichia coli MS 69-1]
gi|300405072|gb|EFJ88610.1| ribosomal protein S1 [Escherichia coli MS 84-1]
gi|300409641|gb|EFJ93179.1| ribosomal protein S1 [Escherichia coli MS 45-1]
gi|300411990|gb|EFJ95300.1| ribosomal protein S1 [Escherichia coli MS 115-1]
gi|300418481|gb|EFK01792.1| ribosomal protein S1 [Escherichia coli MS 182-1]
gi|300450875|gb|EFK14495.1| ribosomal protein S1 [Escherichia coli MS 116-1]
gi|300462443|gb|EFK25936.1| ribosomal protein S1 [Escherichia coli MS 187-1]
gi|300523851|gb|EFK44920.1| ribosomal protein S1 [Escherichia coli MS 119-7]
gi|300530337|gb|EFK51399.1| ribosomal protein S1 [Escherichia coli MS 107-1]
gi|300842320|gb|EFK70080.1| ribosomal protein S1 [Escherichia coli MS 124-1]
gi|300846705|gb|EFK74465.1| ribosomal protein S1 [Escherichia coli MS 78-1]
gi|301078145|gb|EFK92951.1| ribosomal protein S1 [Escherichia coli MS 146-1]
gi|305853399|gb|EFM53838.1| 30S ribosomal protein S1 [Escherichia coli NC101]
gi|306908257|gb|EFN38756.1| ribosomal protein S1 [Escherichia coli W]
gi|307552750|gb|ADN45525.1| 30S ribosomal protein [Escherichia coli ABU 83972]
gi|307627662|gb|ADN71966.1| 30S ribosomal protein S1 [Escherichia coli UM146]
gi|308121409|gb|EFO58671.1| ribosomal protein S1 [Escherichia coli MS 145-7]
gi|309701187|emb|CBJ00487.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
gi|310336800|gb|EFQ01967.1| ribosomal protein S1 [Escherichia coli 1827-70]
gi|312286425|gb|EFR14338.1| ribosomal protein S1 [Escherichia coli 2362-75]
gi|312945431|gb|ADR26258.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
gi|313650850|gb|EFS15251.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|315060196|gb|ADT74523.1| 30S ribosomal subunit protein S1 [Escherichia coli W]
gi|315135559|dbj|BAJ42718.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|315257952|gb|EFU37920.1| ribosomal protein S1 [Escherichia coli MS 85-1]
gi|315287526|gb|EFU46937.1| ribosomal protein S1 [Escherichia coli MS 110-3]
gi|315291242|gb|EFU50602.1| ribosomal protein S1 [Escherichia coli MS 153-1]
gi|315296193|gb|EFU55501.1| ribosomal protein S1 [Escherichia coli MS 16-3]
gi|315619105|gb|EFU99685.1| ribosomal protein S1 [Escherichia coli 3431]
gi|320173252|gb|EFW48461.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
gi|320182021|gb|EFW56926.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
gi|320192603|gb|EFW67244.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
gi|320196595|gb|EFW71218.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
gi|320202307|gb|EFW76878.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
gi|320637779|gb|EFX07571.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
gi|320642904|gb|EFX12105.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
gi|320648361|gb|EFX17016.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
gi|320653677|gb|EFX21751.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320659822|gb|EFX27378.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
gi|320664291|gb|EFX31442.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
gi|323157202|gb|EFZ43325.1| ribosomal protein S1 [Escherichia coli EPECa14]
gi|323159537|gb|EFZ45517.1| ribosomal protein S1 [Escherichia coli E128010]
gi|323165378|gb|EFZ51165.1| ribosomal protein S1 [Shigella sonnei 53G]
gi|323174988|gb|EFZ60603.1| ribosomal protein S1 [Escherichia coli LT-68]
gi|323175466|gb|EFZ61061.1| ribosomal protein S1 [Escherichia coli OK1180]
gi|323185383|gb|EFZ70747.1| ribosomal protein S1 [Escherichia coli OK1357]
gi|323190731|gb|EFZ76000.1| ribosomal protein S1 [Escherichia coli RN587/1]
gi|323379244|gb|ADX51512.1| ribosomal protein S1 [Escherichia coli KO11FL]
gi|323938017|gb|EGB34279.1| ribosomal protein S1 [Escherichia coli E1520]
gi|323942827|gb|EGB38992.1| ribosomal protein S1 [Escherichia coli E482]
gi|323947300|gb|EGB43308.1| ribosomal protein S1 [Escherichia coli H120]
gi|323953382|gb|EGB49248.1| ribosomal protein S1 [Escherichia coli H252]
gi|323958216|gb|EGB53925.1| ribosomal protein S1 [Escherichia coli H263]
gi|323962903|gb|EGB58477.1| ribosomal protein S1 [Escherichia coli H489]
gi|323967158|gb|EGB62582.1| ribosomal protein S1 [Escherichia coli M863]
gi|323973214|gb|EGB68406.1| ribosomal protein S1 [Escherichia coli TA007]
gi|323976702|gb|EGB71790.1| ribosomal protein S1 [Escherichia coli TW10509]
gi|324009837|gb|EGB79056.1| ribosomal protein S1 [Escherichia coli MS 57-2]
gi|324012971|gb|EGB82190.1| ribosomal protein S1 [Escherichia coli MS 60-1]
gi|324019080|gb|EGB88299.1| ribosomal protein S1 [Escherichia coli MS 117-3]
gi|324117224|gb|EGC11132.1| ribosomal protein S1 [Escherichia coli E1167]
gi|326338194|gb|EGD62023.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
gi|326346171|gb|EGD69909.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
gi|327253701|gb|EGE65330.1| ribosomal protein S1 [Escherichia coli STEC_7v]
gi|330910691|gb|EGH39201.1| SSU ribosomal protein S1p [Escherichia coli AA86]
gi|331038235|gb|EGI10455.1| ribosomal protein S1 [Escherichia coli H736]
gi|331044928|gb|EGI17055.1| ribosomal protein S1 [Escherichia coli M605]
gi|331050209|gb|EGI22267.1| ribosomal protein S1 [Escherichia coli M718]
gi|331060746|gb|EGI32710.1| ribosomal protein S1 [Escherichia coli TA143]
gi|331065644|gb|EGI37537.1| ribosomal protein S1 [Escherichia coli TA271]
gi|331070356|gb|EGI41721.1| ribosomal protein S1 [Escherichia coli TA280]
gi|331075388|gb|EGI46686.1| ribosomal protein S1 [Escherichia coli H591]
gi|331080049|gb|EGI51228.1| ribosomal protein S1 [Escherichia coli H299]
gi|332091768|gb|EGI96847.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
gi|332093268|gb|EGI98328.1| ribosomal protein S1 [Shigella boydii 5216-82]
gi|332093334|gb|EGI98392.1| ribosomal protein S1 [Shigella boydii 3594-74]
gi|332104536|gb|EGJ07882.1| ribosomal protein S1 [Shigella sp. D9]
gi|332342354|gb|AEE55688.1| ribosomal protein RpsA [Escherichia coli UMNK88]
gi|332758996|gb|EGJ89306.1| ribosomal protein S1 [Shigella flexneri 4343-70]
gi|332760108|gb|EGJ90406.1| ribosomal protein S1 [Shigella flexneri 2747-71]
gi|332762680|gb|EGJ92943.1| ribosomal protein S1 [Shigella flexneri K-671]
gi|332767858|gb|EGJ98048.1| ribosomal protein S1 [Shigella flexneri 2930-71]
gi|333006352|gb|EGK25860.1| ribosomal protein S1 [Shigella flexneri VA-6]
gi|333007009|gb|EGK26504.1| ribosomal protein S1 [Shigella flexneri K-218]
gi|333008889|gb|EGK28349.1| ribosomal protein S1 [Shigella flexneri K-272]
gi|333020060|gb|EGK39331.1| ribosomal protein S1 [Shigella flexneri K-304]
gi|333020199|gb|EGK39469.1| ribosomal protein S1 [Shigella flexneri K-227]
gi|333969015|gb|AEG35820.1| 30S ribosomal protein S1 [Escherichia coli NA114]
gi|335576443|gb|EGM62694.1| ribosomal protein S1 [Shigella flexneri J1713]
gi|338771045|gb|EGP25795.1| 30S ribosomal protein S1 [Escherichia coli PCN033]
gi|339413946|gb|AEJ55618.1| ribosomal protein S1 [Escherichia coli UMNF18]
gi|340735335|gb|EGR64393.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 01-09591]
gi|340741155|gb|EGR75305.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. LB226692]
gi|341917486|gb|EGT67102.1| hypothetical protein C22711_1130 [Escherichia coli O104:H4 str.
C227-11]
gi|342364389|gb|EGU28490.1| 30S ribosomal protein S1 [Escherichia coli XH140A]
gi|342929142|gb|EGU97864.1| ribosomal protein S1 [Escherichia coli MS 79-10]
gi|344195225|gb|EGV49295.1| 30S ribosomal protein S1 [Escherichia coli XH001]
gi|345339006|gb|EGW71432.1| ribosomal protein S1 [Escherichia coli STEC_C165-02]
gi|345342524|gb|EGW74918.1| ribosomal protein S1 [Escherichia coli STEC_B2F1]
gi|345344580|gb|EGW76947.1| ribosomal protein S1 [Escherichia coli 2534-86]
gi|345352690|gb|EGW84934.1| ribosomal protein S1 [Escherichia coli STEC_94C]
gi|345358674|gb|EGW90857.1| ribosomal protein S1 [Escherichia coli 3030-1]
gi|345363728|gb|EGW95869.1| ribosomal protein S1 [Escherichia coli STEC_DG131-3]
gi|345365358|gb|EGW97467.1| ribosomal protein S1 [Escherichia coli STEC_EH250]
gi|345378149|gb|EGX10080.1| ribosomal protein S1 [Escherichia coli STEC_MHI813]
gi|345380543|gb|EGX12442.1| ribosomal protein S1 [Escherichia coli G58-1]
gi|345384500|gb|EGX14362.1| ribosomal protein S1 [Escherichia coli STEC_H.1.8]
gi|345390260|gb|EGX20059.1| ribosomal protein S1 [Escherichia coli STEC_S1191]
gi|345394741|gb|EGX24495.1| ribosomal protein S1 [Escherichia coli TX1999]
gi|349737055|gb|AEQ11761.1| 30S ribosomal subunit protein S1 [Escherichia coli O7:K1 str. CE10]
gi|354856647|gb|EHF17105.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 04-8351]
gi|354857894|gb|EHF18347.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C227-11]
gi|354864662|gb|EHF25091.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C236-11]
gi|354874975|gb|EHF35341.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 09-7901]
gi|354878935|gb|EHF39282.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4404]
gi|354882727|gb|EHF43049.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-3677]
gi|354884349|gb|EHF44662.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4522]
gi|354887406|gb|EHF47681.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4623]
gi|354900601|gb|EHF60735.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354903746|gb|EHF63846.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354906109|gb|EHF66191.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917026|gb|EHF76996.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354921087|gb|EHF81012.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355352828|gb|EHG02002.1| 30S ribosomal protein S1 [Escherichia coli cloneA_i1]
gi|355419349|gb|AER83546.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i2']
gi|355424269|gb|AER88465.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i14']
gi|359331602|dbj|BAL38049.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MDS42]
gi|371595869|gb|EHN84715.1| 30S ribosomal protein S1 [Escherichia coli H494]
gi|371599558|gb|EHN88342.1| 30S ribosomal protein S1 [Escherichia coli TA124]
gi|371607863|gb|EHN96426.1| 30S ribosomal protein S1 [Escherichia coli E101]
gi|371609924|gb|EHN98457.1| 30S ribosomal protein S1 [Escherichia coli H397]
gi|371612376|gb|EHO00888.1| 30S ribosomal protein S1 [Escherichia coli B093]
gi|374358016|gb|AEZ39723.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. RM12579]
gi|375323122|gb|EHS68844.1| 30S ribosomal protein S1 [Escherichia coli O157:H43 str. T22]
gi|377848008|gb|EHU13005.1| ribosomal protein S1 [Escherichia coli DEC1A]
gi|377849743|gb|EHU14712.1| ribosomal protein S1 [Escherichia coli DEC1C]
gi|377852525|gb|EHU17444.1| ribosomal protein S1 [Escherichia coli DEC1B]
gi|377861830|gb|EHU26646.1| ribosomal protein S1 [Escherichia coli DEC1D]
gi|377865966|gb|EHU30756.1| ribosomal protein S1 [Escherichia coli DEC1E]
gi|377868113|gb|EHU32862.1| ribosomal protein S1 [Escherichia coli DEC2A]
gi|377878255|gb|EHU42843.1| ribosomal protein S1 [Escherichia coli DEC2B]
gi|377882985|gb|EHU47516.1| ribosomal protein S1 [Escherichia coli DEC2D]
gi|377884098|gb|EHU48615.1| ribosomal protein S1 [Escherichia coli DEC2C]
gi|377897240|gb|EHU61623.1| ribosomal protein S1 [Escherichia coli DEC2E]
gi|377899821|gb|EHU64167.1| ribosomal protein S1 [Escherichia coli DEC3A]
gi|377901627|gb|EHU65943.1| ribosomal protein S1 [Escherichia coli DEC3B]
gi|377913238|gb|EHU77382.1| ribosomal protein S1 [Escherichia coli DEC3C]
gi|377917303|gb|EHU81368.1| ribosomal protein S1 [Escherichia coli DEC3D]
gi|377918927|gb|EHU82971.1| ribosomal protein S1 [Escherichia coli DEC3E]
gi|377931142|gb|EHU95012.1| ribosomal protein S1 [Escherichia coli DEC3F]
gi|377933434|gb|EHU97279.1| ribosomal protein S1 [Escherichia coli DEC4A]
gi|377938338|gb|EHV02106.1| ribosomal protein S1 [Escherichia coli DEC4B]
gi|377949087|gb|EHV12727.1| ribosomal protein S1 [Escherichia coli DEC4C]
gi|377950337|gb|EHV13965.1| ribosomal protein S1 [Escherichia coli DEC4D]
gi|377953872|gb|EHV17436.1| ribosomal protein S1 [Escherichia coli DEC4E]
gi|377964536|gb|EHV27971.1| ribosomal protein S1 [Escherichia coli DEC5A]
gi|377965350|gb|EHV28770.1| ribosomal protein S1 [Escherichia coli DEC4F]
gi|377971114|gb|EHV34471.1| ribosomal protein S1 [Escherichia coli DEC5B]
gi|377979291|gb|EHV42568.1| ribosomal protein S1 [Escherichia coli DEC5D]
gi|377986598|gb|EHV49788.1| ribosomal protein S1 [Escherichia coli DEC5E]
gi|377999050|gb|EHV62137.1| ribosomal protein S1 [Escherichia coli DEC6A]
gi|377999923|gb|EHV62998.1| ribosomal protein S1 [Escherichia coli DEC6B]
gi|378002184|gb|EHV65237.1| ribosomal protein S1 [Escherichia coli DEC6C]
gi|378012342|gb|EHV75274.1| ribosomal protein S1 [Escherichia coli DEC6D]
gi|378015442|gb|EHV78337.1| ribosomal protein S1 [Escherichia coli DEC6E]
gi|378018117|gb|EHV80984.1| ribosomal protein S1 [Escherichia coli DEC7A]
gi|378027067|gb|EHV89699.1| ribosomal protein S1 [Escherichia coli DEC7C]
gi|378032859|gb|EHV95440.1| ribosomal protein S1 [Escherichia coli DEC7D]
gi|378036346|gb|EHV98889.1| ribosomal protein S1 [Escherichia coli DEC7B]
gi|378041873|gb|EHW04331.1| ribosomal protein S1 [Escherichia coli DEC7E]
gi|378055733|gb|EHW17994.1| ribosomal protein S1 [Escherichia coli DEC8B]
gi|378061239|gb|EHW23425.1| ribosomal protein S1 [Escherichia coli DEC8C]
gi|378066863|gb|EHW28991.1| ribosomal protein S1 [Escherichia coli DEC8D]
gi|378071445|gb|EHW33515.1| ribosomal protein S1 [Escherichia coli DEC8E]
gi|378080071|gb|EHW42037.1| ribosomal protein S1 [Escherichia coli DEC9A]
gi|378081151|gb|EHW43106.1| ribosomal protein S1 [Escherichia coli DEC9B]
gi|378087751|gb|EHW49607.1| ribosomal protein S1 [Escherichia coli DEC9C]
gi|378093768|gb|EHW55572.1| ribosomal protein S1 [Escherichia coli DEC9D]
gi|378100104|gb|EHW61801.1| ribosomal protein S1 [Escherichia coli DEC9E]
gi|378105216|gb|EHW66863.1| ribosomal protein S1 [Escherichia coli DEC10A]
gi|378113702|gb|EHW75265.1| ribosomal protein S1 [Escherichia coli DEC10B]
gi|378117260|gb|EHW78776.1| ribosomal protein S1 [Escherichia coli DEC10C]
gi|378120950|gb|EHW82412.1| ribosomal protein S1 [Escherichia coli DEC10D]
gi|378132354|gb|EHW93706.1| ribosomal protein S1 [Escherichia coli DEC10E]
gi|378134878|gb|EHW96192.1| ribosomal protein S1 [Escherichia coli DEC11A]
gi|378138103|gb|EHW99364.1| ribosomal protein S1 [Escherichia coli DEC10F]
gi|378145299|gb|EHX06465.1| ribosomal protein S1 [Escherichia coli DEC11B]
gi|378151981|gb|EHX13083.1| ribosomal protein S1 [Escherichia coli DEC11D]
gi|378155165|gb|EHX16225.1| ribosomal protein S1 [Escherichia coli DEC11C]
gi|378160255|gb|EHX21252.1| ribosomal protein S1 [Escherichia coli DEC11E]
gi|378173210|gb|EHX34054.1| ribosomal protein S1 [Escherichia coli DEC12B]
gi|378173919|gb|EHX34752.1| ribosomal protein S1 [Escherichia coli DEC12A]
gi|378175365|gb|EHX36183.1| ribosomal protein S1 [Escherichia coli DEC12C]
gi|378188664|gb|EHX49260.1| ribosomal protein S1 [Escherichia coli DEC12D]
gi|378188967|gb|EHX49561.1| ribosomal protein S1 [Escherichia coli DEC13A]
gi|378193268|gb|EHX53809.1| ribosomal protein S1 [Escherichia coli DEC12E]
gi|378204639|gb|EHX65055.1| ribosomal protein S1 [Escherichia coli DEC13B]
gi|378206463|gb|EHX66866.1| ribosomal protein S1 [Escherichia coli DEC13C]
gi|378206822|gb|EHX67224.1| ribosomal protein S1 [Escherichia coli DEC13D]
gi|378217617|gb|EHX77894.1| ribosomal protein S1 [Escherichia coli DEC13E]
gi|378220901|gb|EHX81152.1| ribosomal protein S1 [Escherichia coli DEC14A]
gi|378224042|gb|EHX84250.1| ribosomal protein S1 [Escherichia coli DEC14B]
gi|378230865|gb|EHX90977.1| ribosomal protein S1 [Escherichia coli DEC14C]
gi|378234766|gb|EHX94842.1| ribosomal protein S1 [Escherichia coli DEC14D]
gi|378242671|gb|EHY02623.1| ribosomal protein S1 [Escherichia coli DEC15A]
gi|378250139|gb|EHY10047.1| ribosomal protein S1 [Escherichia coli DEC15B]
gi|378251188|gb|EHY11089.1| ribosomal protein S1 [Escherichia coli DEC15C]
gi|378256935|gb|EHY16780.1| ribosomal protein S1 [Escherichia coli DEC15D]
gi|378260781|gb|EHY20581.1| ribosomal protein S1 [Escherichia coli DEC15E]
gi|380348873|gb|EIA37149.1| 30S ribosomal protein S1 [Escherichia coli SCI-07]
gi|383102259|gb|AFG39768.1| 30S ribosomal protein S1 [Escherichia coli P12b]
gi|383393644|gb|AFH18602.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|383404414|gb|AFH10657.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|383466428|gb|EID61449.1| 30S ribosomal protein S1 [Shigella flexneri 5a str. M90T]
gi|383474020|gb|EID66024.1| 30S ribosomal protein S1 [Escherichia coli W26]
gi|384378493|gb|EIE36374.1| 30S ribosomal protein S1 [Escherichia coli J53]
gi|384472908|gb|EIE56956.1| 30S ribosomal protein S1 [Escherichia coli AI27]
gi|385157616|gb|EIF19607.1| 30S ribosomal protein S1 [Escherichia coli O32:H37 str. P4]
gi|385536554|gb|EIF83447.1| 30S ribosomal protein S1 [Escherichia coli M919]
gi|385707553|gb|EIG44584.1| 30S ribosomal protein S1 [Escherichia coli B799]
gi|385711746|gb|EIG48703.1| 30S ribosomal protein S1 [Escherichia coli H730]
gi|386122831|gb|EIG71438.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
gi|386138260|gb|EIG79420.1| ribosomal protein S1 [Escherichia coli 1.2741]
gi|386149328|gb|EIG95760.1| ribosomal protein S1 [Escherichia coli 97.0246]
gi|386153815|gb|EIH05096.1| ribosomal protein S1 [Escherichia coli 5.0588]
gi|386158890|gb|EIH15223.1| ribosomal protein S1 [Escherichia coli 97.0259]
gi|386164330|gb|EIH26116.1| ribosomal protein S1 [Escherichia coli 1.2264]
gi|386169337|gb|EIH35845.1| ribosomal protein S1 [Escherichia coli 96.0497]
gi|386173953|gb|EIH45954.1| ribosomal protein S1 [Escherichia coli 99.0741]
gi|386181173|gb|EIH58643.1| ribosomal protein S1 [Escherichia coli 3.2608]
gi|386185702|gb|EIH68428.1| ribosomal protein S1 [Escherichia coli 93.0624]
gi|386190223|gb|EIH78971.1| ribosomal protein S1 [Escherichia coli 4.0522]
gi|386196195|gb|EIH90421.1| ribosomal protein S1 [Escherichia coli JB1-95]
gi|386199957|gb|EIH98948.1| ribosomal protein S1 [Escherichia coli 96.154]
gi|386206796|gb|EII11302.1| ribosomal protein S1 [Escherichia coli 5.0959]
gi|386212083|gb|EII22532.1| ribosomal protein S1 [Escherichia coli 9.0111]
gi|386218239|gb|EII34722.1| ribosomal protein S1 [Escherichia coli 4.0967]
gi|386224560|gb|EII46895.1| ribosomal protein S1 [Escherichia coli 2.3916]
gi|386229391|gb|EII56746.1| ribosomal protein S1 [Escherichia coli 3.3884]
gi|386232643|gb|EII64628.1| ribosomal protein S1 [Escherichia coli 2.4168]
gi|386240847|gb|EII77767.1| ribosomal protein S1 [Escherichia coli 3.2303]
gi|386244177|gb|EII85909.1| ribosomal protein S1 [Escherichia coli 3003]
gi|386248033|gb|EII94206.1| ribosomal protein S1 [Escherichia coli TW07793]
gi|386255831|gb|EIJ05519.1| ribosomal protein S1 [Escherichia coli B41]
gi|386261401|gb|EIJ16866.1| ribosomal protein S1 [Escherichia coli 900105 (10e)]
gi|386794981|gb|AFJ28015.1| 30S ribosomal protein S1 [Escherichia coli Xuzhou21]
gi|388332449|gb|EIK99120.1| 30S ribosomal protein S1 [Escherichia coli O103:H2 str. CVM9450]
gi|388338641|gb|EIL05089.1| 30S ribosomal protein S1 [Escherichia coli O103:H25 str. CVM9340]
gi|388347162|gb|EIL12850.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9545]
gi|388352796|gb|EIL17884.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9534]
gi|388357528|gb|EIL22091.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9570]
gi|388363500|gb|EIL27429.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9574]
gi|388373675|gb|EIL36922.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10026]
gi|388379349|gb|EIL42018.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9942]
gi|388385806|gb|EIL47473.1| 30S ribosomal protein S1 [Escherichia coli 541-15]
gi|388392544|gb|EIL53961.1| 30S ribosomal protein S1 [Escherichia coli KD2]
gi|388393074|gb|EIL54468.1| 30S ribosomal protein S1 [Escherichia coli KD1]
gi|388401848|gb|EIL62460.1| 30S ribosomal protein S1 [Escherichia coli 576-1]
gi|388401976|gb|EIL62577.1| 30S ribosomal protein S1 [Escherichia coli 75]
gi|388405207|gb|EIL65641.1| 30S ribosomal protein S1 [Escherichia coli 541-1]
gi|388413178|gb|EIL73188.1| 30S ribosomal protein S1 [Escherichia coli CUMT8]
gi|388416606|gb|EIL76488.1| 30S ribosomal protein S1 [Escherichia coli HM605]
gi|390649708|gb|EIN28188.1| ribosomal protein S1 [Escherichia coli FRIK1996]
gi|390651818|gb|EIN30088.1| ribosomal protein S1 [Escherichia coli FDA517]
gi|390652133|gb|EIN30368.1| ribosomal protein S1 [Escherichia coli FDA505]
gi|390669182|gb|EIN45887.1| ribosomal protein S1 [Escherichia coli 93-001]
gi|390671692|gb|EIN48076.1| ribosomal protein S1 [Escherichia coli FRIK1990]
gi|390672244|gb|EIN48554.1| ribosomal protein S1 [Escherichia coli FRIK1985]
gi|390677866|gb|EIN53866.1| ribosomal protein S1 [Escherichia coli PA3]
gi|390690811|gb|EIN65597.1| ribosomal protein S1 [Escherichia coli PA9]
gi|390691240|gb|EIN65998.1| ribosomal protein S1 [Escherichia coli PA5]
gi|390707412|gb|EIN80762.1| ribosomal protein S1 [Escherichia coli PA10]
gi|390709183|gb|EIN82300.1| ribosomal protein S1 [Escherichia coli PA15]
gi|390710189|gb|EIN83212.1| ribosomal protein S1 [Escherichia coli PA14]
gi|390719374|gb|EIN92099.1| ribosomal protein S1 [Escherichia coli PA22]
gi|390732357|gb|EIO04043.1| ribosomal protein S1 [Escherichia coli PA24]
gi|390732548|gb|EIO04233.1| ribosomal protein S1 [Escherichia coli PA25]
gi|390735395|gb|EIO06789.1| ribosomal protein S1 [Escherichia coli PA28]
gi|390750844|gb|EIO20835.1| ribosomal protein S1 [Escherichia coli PA31]
gi|390751222|gb|EIO21150.1| ribosomal protein S1 [Escherichia coli PA32]
gi|390754063|gb|EIO23693.1| ribosomal protein S1 [Escherichia coli PA33]
gi|390761768|gb|EIO31044.1| ribosomal protein S1 [Escherichia coli PA40]
gi|390775158|gb|EIO43232.1| ribosomal protein S1 [Escherichia coli PA41]
gi|390776808|gb|EIO44687.1| ribosomal protein S1 [Escherichia coli PA42]
gi|390780689|gb|EIO48387.1| ribosomal protein S1 [Escherichia coli PA39]
gi|390785105|gb|EIO52661.1| ribosomal protein S1 [Escherichia coli TW06591]
gi|390794344|gb|EIO61643.1| ribosomal protein S1 [Escherichia coli TW10246]
gi|390801157|gb|EIO68223.1| ribosomal protein S1 [Escherichia coli TW11039]
gi|390808254|gb|EIO75100.1| ribosomal protein S1 [Escherichia coli TW07945]
gi|390811156|gb|EIO77880.1| ribosomal protein S1 [Escherichia coli TW09109]
gi|390818750|gb|EIO85119.1| ribosomal protein S1 [Escherichia coli TW10119]
gi|390821414|gb|EIO87604.1| ribosomal protein S1 [Escherichia coli TW09098]
gi|390831716|gb|EIO97084.1| ribosomal protein S1 [Escherichia coli EC4196]
gi|390836270|gb|EIP00823.1| ribosomal protein S1 [Escherichia coli EC4203]
gi|390839218|gb|EIP03355.1| ribosomal protein S1 [Escherichia coli TW09195]
gi|390854757|gb|EIP17534.1| ribosomal protein S1 [Escherichia coli TW14301]
gi|390857277|gb|EIP19725.1| ribosomal protein S1 [Escherichia coli TW14313]
gi|390857747|gb|EIP20173.1| ribosomal protein S1 [Escherichia coli EC4421]
gi|390870638|gb|EIP32139.1| ribosomal protein S1 [Escherichia coli EC4422]
gi|390875081|gb|EIP36163.1| ribosomal protein S1 [Escherichia coli EC4013]
gi|390884594|gb|EIP44885.1| ribosomal protein S1 [Escherichia coli EC4402]
gi|390887133|gb|EIP47128.1| ribosomal protein S1 [Escherichia coli EC4439]
gi|390892775|gb|EIP52346.1| ribosomal protein S1 [Escherichia coli EC4436]
gi|390903263|gb|EIP62318.1| ribosomal protein S1 [Escherichia coli EC1738]
gi|390908454|gb|EIP67277.1| ribosomal protein S1 [Escherichia coli EC4437]
gi|390911425|gb|EIP70130.1| ribosomal protein S1 [Escherichia coli EC1734]
gi|390913358|gb|EIP71949.1| ribosomal protein S1 [Escherichia coli EC4448]
gi|390924234|gb|EIP82036.1| ribosomal protein S1 [Escherichia coli EC1863]
gi|390925642|gb|EIP83276.1| ribosomal protein S1 [Escherichia coli EC1845]
gi|391250762|gb|EIQ09982.1| ribosomal protein S1 [Shigella flexneri CCH060]
gi|391253134|gb|EIQ12317.1| ribosomal protein S1 [Shigella flexneri 2850-71]
gi|391257254|gb|EIQ16373.1| ribosomal protein S1 [Shigella flexneri K-1770]
gi|391266634|gb|EIQ25583.1| ribosomal protein S1 [Shigella flexneri K-315]
gi|391270337|gb|EIQ29229.1| ribosomal protein S1 [Shigella boydii 965-58]
gi|391272217|gb|EIQ31072.1| ribosomal protein S1 [Shigella flexneri K-404]
gi|391287268|gb|EIQ45799.1| ribosomal protein S1 [Shigella sonnei 3226-85]
gi|391287410|gb|EIQ45940.1| ribosomal protein S1 [Shigella boydii 4444-74]
gi|391288134|gb|EIQ46643.1| ribosomal protein S1 [Shigella sonnei 3233-85]
gi|391295925|gb|EIQ54047.1| ribosomal protein S1 [Shigella sonnei 4822-66]
gi|391300944|gb|EIQ58847.1| ribosomal protein S1 [Shigella dysenteriae 225-75]
gi|391308898|gb|EIQ66585.1| ribosomal protein S1 [Escherichia coli EPECa12]
gi|391314246|gb|EIQ71802.1| ribosomal protein S1 [Escherichia coli EPEC C342-62]
gi|394382012|gb|EJE59665.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10224]
gi|394382303|gb|EJE59950.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9634]
gi|394389492|gb|EJE66634.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9602]
gi|394395887|gb|EJE72280.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9455]
gi|394401828|gb|EJE77597.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10021]
gi|394413049|gb|EJE87134.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9553]
gi|394415774|gb|EJE89618.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10030]
gi|394426790|gb|EJE99583.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9952]
gi|397786223|gb|EJK97063.1| ribosomal protein S1 [Escherichia coli STEC_O31]
gi|397900122|gb|EJL16488.1| ribosomal protein S1 [Shigella flexneri 6603-63]
gi|397902550|gb|EJL18863.1| ribosomal protein S1 [Shigella sonnei str. Moseley]
gi|404292293|gb|EJZ49122.1| 30S ribosomal protein S1 [Escherichia sp. 1_1_43]
gi|404339036|gb|EJZ65476.1| ribosomal protein S1 [Shigella flexneri 1485-80]
gi|406778598|gb|AFS58022.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055181|gb|AFS75232.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 2011C-3493]
gi|407064419|gb|AFS85466.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408071741|gb|EKH06076.1| ribosomal protein S1 [Escherichia coli PA7]
gi|408075294|gb|EKH09530.1| ribosomal protein S1 [Escherichia coli FRIK920]
gi|408085513|gb|EKH19137.1| ribosomal protein S1 [Escherichia coli PA34]
gi|408089351|gb|EKH22682.1| ribosomal protein S1 [Escherichia coli FDA506]
gi|408094145|gb|EKH27190.1| ribosomal protein S1 [Escherichia coli FDA507]
gi|408101182|gb|EKH33651.1| ribosomal protein S1 [Escherichia coli FDA504]
gi|408109149|gb|EKH41080.1| ribosomal protein S1 [Escherichia coli FRIK1999]
gi|408115678|gb|EKH47052.1| ribosomal protein S1 [Escherichia coli FRIK1997]
gi|408120673|gb|EKH51648.1| ribosomal protein S1 [Escherichia coli NE1487]
gi|408129008|gb|EKH59257.1| ribosomal protein S1 [Escherichia coli NE037]
gi|408131133|gb|EKH61194.1| ribosomal protein S1 [Escherichia coli FRIK2001]
gi|408140216|gb|EKH69751.1| ribosomal protein S1 [Escherichia coli PA4]
gi|408149566|gb|EKH78244.1| ribosomal protein S1 [Escherichia coli PA23]
gi|408151282|gb|EKH79790.1| ribosomal protein S1 [Escherichia coli PA49]
gi|408156571|gb|EKH84773.1| ribosomal protein S1 [Escherichia coli PA45]
gi|408166282|gb|EKH93900.1| ribosomal protein S1 [Escherichia coli TT12B]
gi|408170776|gb|EKH97931.1| ribosomal protein S1 [Escherichia coli MA6]
gi|408172988|gb|EKI00041.1| ribosomal protein S1 [Escherichia coli 5905]
gi|408186035|gb|EKI12149.1| ribosomal protein S1 [Escherichia coli CB7326]
gi|408190032|gb|EKI15708.1| ribosomal protein S1 [Escherichia coli 5412]
gi|408190579|gb|EKI16224.1| ribosomal protein S1 [Escherichia coli EC96038]
gi|408196394|gb|EKI21675.1| ribosomal protein S1 [Escherichia coli TW15901]
gi|408205138|gb|EKI30038.1| ribosomal protein S1 [Escherichia coli TW00353]
gi|408205980|gb|EKI30803.1| ribosomal protein S1 [Escherichia coli ARS4.2123]
gi|408217730|gb|EKI41969.1| ribosomal protein S1 [Escherichia coli 3006]
gi|408220912|gb|EKI44903.1| ribosomal protein S1 [Escherichia coli 07798]
gi|408228678|gb|EKI52205.1| ribosomal protein S1 [Escherichia coli N1]
gi|408231546|gb|EKI54813.1| ribosomal protein S1 [Escherichia coli PA38]
gi|408237562|gb|EKI60417.1| ribosomal protein S1 [Escherichia coli EC1735]
gi|408248306|gb|EKI70361.1| ribosomal protein S1 [Escherichia coli EC1736]
gi|408251980|gb|EKI73689.1| ribosomal protein S1 [Escherichia coli EC1737]
gi|408258188|gb|EKI79471.1| ribosomal protein S1 [Escherichia coli EC1846]
gi|408267130|gb|EKI87599.1| ribosomal protein S1 [Escherichia coli EC1847]
gi|408268806|gb|EKI89135.1| ribosomal protein S1 [Escherichia coli EC1848]
gi|408278307|gb|EKI98069.1| ribosomal protein S1 [Escherichia coli EC1849]
gi|408284009|gb|EKJ03138.1| ribosomal protein S1 [Escherichia coli EC1850]
gi|408286755|gb|EKJ05674.1| ribosomal protein S1 [Escherichia coli EC1856]
gi|408299202|gb|EKJ17031.1| ribosomal protein S1 [Escherichia coli EC1862]
gi|408299676|gb|EKJ17447.1| ribosomal protein S1 [Escherichia coli EC1864]
gi|408308792|gb|EKJ26025.1| ribosomal protein S1 [Escherichia coli EC1865]
gi|408315313|gb|EKJ31632.1| ribosomal protein S1 [Escherichia coli EC1868]
gi|408316038|gb|EKJ32336.1| ribosomal protein S1 [Escherichia coli EC1866]
gi|408330579|gb|EKJ45842.1| ribosomal protein S1 [Escherichia coli EC1869]
gi|408335284|gb|EKJ50135.1| ribosomal protein S1 [Escherichia coli NE098]
gi|408337114|gb|EKJ51860.1| ribosomal protein S1 [Escherichia coli EC1870]
gi|408347170|gb|EKJ61404.1| ribosomal protein S1 [Escherichia coli 0.1288]
gi|408349643|gb|EKJ63565.1| ribosomal protein S1 [Escherichia coli FRIK523]
gi|408352721|gb|EKJ66265.1| ribosomal protein S1 [Escherichia coli 0.1304]
gi|408458956|gb|EKJ82740.1| 30S ribosomal protein S1 [Escherichia coli AD30]
gi|408557643|gb|EKK34075.1| ribosomal protein S1 [Escherichia coli 5.2239]
gi|408557854|gb|EKK34276.1| ribosomal protein S1 [Escherichia coli 3.4870]
gi|408558558|gb|EKK34922.1| ribosomal protein S1 [Escherichia coli 6.0172]
gi|408570140|gb|EKK46120.1| ribosomal protein S1 [Escherichia coli 8.0586]
gi|408571986|gb|EKK47913.1| ribosomal protein S1 [Escherichia coli 8.0566]
gi|408572601|gb|EKK48487.1| ribosomal protein S1 [Escherichia coli 8.0569]
gi|408588694|gb|EKK63266.1| ribosomal protein S1 [Escherichia coli 8.2524]
gi|408589698|gb|EKK64200.1| ribosomal protein S1 [Escherichia coli 10.0833]
gi|408601322|gb|EKK75125.1| ribosomal protein S1 [Escherichia coli 8.0416]
gi|408603513|gb|EKK77154.1| ribosomal protein S1 [Escherichia coli 10.0869]
gi|408606767|gb|EKK80193.1| ribosomal protein S1 [Escherichia coli 88.0221]
gi|408616212|gb|EKK89371.1| ribosomal protein S1 [Escherichia coli 10.0821]
gi|412962249|emb|CCK46163.1| 30S ribosomal subunit protein S1 [Escherichia coli chi7122]
gi|412968828|emb|CCJ43454.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|421942234|gb|EKT99588.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421944007|gb|EKU01269.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421949995|gb|EKU06900.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427213408|gb|EKV82817.1| ribosomal protein S1 [Escherichia coli 88.1042]
gi|427215267|gb|EKV84453.1| ribosomal protein S1 [Escherichia coli 89.0511]
gi|427215522|gb|EKV84701.1| ribosomal protein S1 [Escherichia coli 88.1467]
gi|427232786|gb|EKW00592.1| ribosomal protein S1 [Escherichia coli 90.2281]
gi|427233208|gb|EKW00994.1| ribosomal protein S1 [Escherichia coli 90.0039]
gi|427234752|gb|EKW02429.1| ribosomal protein S1 [Escherichia coli 90.0091]
gi|427250509|gb|EKW17180.1| ribosomal protein S1 [Escherichia coli 93.0056]
gi|427252035|gb|EKW18557.1| ribosomal protein S1 [Escherichia coli 93.0055]
gi|427253369|gb|EKW19811.1| ribosomal protein S1 [Escherichia coli 94.0618]
gi|427269290|gb|EKW34256.1| ribosomal protein S1 [Escherichia coli 95.0183]
gi|427269429|gb|EKW34390.1| ribosomal protein S1 [Escherichia coli 95.0943]
gi|427273585|gb|EKW38264.1| ribosomal protein S1 [Escherichia coli 95.1288]
gi|427283329|gb|EKW47537.1| ribosomal protein S1 [Escherichia coli 96.0939]
gi|427285796|gb|EKW49735.1| ribosomal protein S1 [Escherichia coli 96.0428]
gi|427291007|gb|EKW54457.1| ribosomal protein S1 [Escherichia coli 96.0427]
gi|427292093|gb|EKW55449.1| ribosomal protein S1 [Escherichia coli 96.0932]
gi|427304142|gb|EKW66812.1| ribosomal protein S1 [Escherichia coli 97.0003]
gi|427309248|gb|EKW71570.1| ribosomal protein S1 [Escherichia coli 96.0107]
gi|427321145|gb|EKW82848.1| ribosomal protein S1 [Escherichia coli 97.0007]
gi|427323474|gb|EKW85037.1| ribosomal protein S1 [Escherichia coli 97.1742]
gi|427333067|gb|EKW94181.1| ribosomal protein S1 [Escherichia coli 99.0713]
gi|427333516|gb|EKW94621.1| ribosomal protein S1 [Escherichia coli 99.0678]
gi|427336233|gb|EKW97212.1| ribosomal protein S1 [Escherichia coli 99.0672]
gi|429259415|gb|EKY43112.1| ribosomal protein S1 [Escherichia coli 96.0109]
gi|429261278|gb|EKY44728.1| ribosomal protein S1 [Escherichia coli 97.0010]
gi|429350045|gb|EKY86780.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02030]
gi|429350757|gb|EKY87482.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429351135|gb|EKY87856.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02092]
gi|429365413|gb|EKZ02026.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02093]
gi|429366364|gb|EKZ02967.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02281]
gi|429368927|gb|EKZ05510.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02318]
gi|429381334|gb|EKZ17821.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02913]
gi|429382302|gb|EKZ18767.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03439]
gi|429383350|gb|EKZ19810.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03943]
gi|429395568|gb|EKZ31934.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-04080]
gi|429396782|gb|EKZ33130.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429397660|gb|EKZ34006.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429409388|gb|EKZ45618.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429417848|gb|EKZ53995.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421517|gb|EKZ57638.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429423257|gb|EKZ59365.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429427259|gb|EKZ63344.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434141|gb|EKZ70170.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429438128|gb|EKZ74122.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429443484|gb|EKZ79436.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429449587|gb|EKZ85486.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0466]
gi|429455162|gb|EKZ91019.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9941]
gi|430877349|gb|ELC00800.1| 30S ribosomal protein S1 [Escherichia coli KTE2]
gi|430879111|gb|ELC02468.1| 30S ribosomal protein S1 [Escherichia coli KTE4]
gi|430888180|gb|ELC10903.1| 30S ribosomal protein S1 [Escherichia coli KTE10]
gi|430889560|gb|ELC12221.1| 30S ribosomal protein S1 [Escherichia coli KTE5]
gi|430900650|gb|ELC22668.1| 30S ribosomal protein S1 [Escherichia coli KTE12]
gi|430909330|gb|ELC30715.1| 30S ribosomal protein S1 [Escherichia coli KTE16]
gi|430910596|gb|ELC31903.1| 30S ribosomal protein S1 [Escherichia coli KTE15]
gi|430917111|gb|ELC38159.1| 30S ribosomal protein S1 [Escherichia coli KTE25]
gi|430921560|gb|ELC42384.1| 30S ribosomal protein S1 [Escherichia coli KTE21]
gi|430927706|gb|ELC48269.1| 30S ribosomal protein S1 [Escherichia coli KTE26]
gi|430931877|gb|ELC52311.1| 30S ribosomal protein S1 [Escherichia coli KTE28]
gi|430937406|gb|ELC57661.1| 30S ribosomal protein S1 [Escherichia coli KTE39]
gi|430942442|gb|ELC62575.1| 30S ribosomal protein S1 [Escherichia coli KTE44]
gi|430946643|gb|ELC66566.1| 30S ribosomal protein S1 [Escherichia coli KTE178]
gi|430955396|gb|ELC74179.1| 30S ribosomal protein S1 [Escherichia coli KTE187]
gi|430958399|gb|ELC76993.1| 30S ribosomal protein S1 [Escherichia coli KTE181]
gi|430965812|gb|ELC83221.1| 30S ribosomal protein S1 [Escherichia coli KTE188]
gi|430968356|gb|ELC85582.1| 30S ribosomal protein S1 [Escherichia coli KTE189]
gi|430973823|gb|ELC90768.1| 30S ribosomal protein S1 [Escherichia coli KTE193]
gi|430975240|gb|ELC92142.1| 30S ribosomal protein S1 [Escherichia coli KTE191]
gi|430984498|gb|ELD01121.1| 30S ribosomal protein S1 [Escherichia coli KTE201]
gi|430990595|gb|ELD07016.1| 30S ribosomal protein S1 [Escherichia coli KTE204]
gi|430999453|gb|ELD15535.1| 30S ribosomal protein S1 [Escherichia coli KTE206]
gi|431008061|gb|ELD22868.1| 30S ribosomal protein S1 [Escherichia coli KTE208]
gi|431009233|gb|ELD23853.1| 30S ribosomal protein S1 [Escherichia coli KTE210]
gi|431017755|gb|ELD31210.1| 30S ribosomal protein S1 [Escherichia coli KTE212]
gi|431022757|gb|ELD36017.1| 30S ribosomal protein S1 [Escherichia coli KTE213]
gi|431027314|gb|ELD40377.1| 30S ribosomal protein S1 [Escherichia coli KTE214]
gi|431031181|gb|ELD44079.1| 30S ribosomal protein S1 [Escherichia coli KTE216]
gi|431041594|gb|ELD52094.1| 30S ribosomal protein S1 [Escherichia coli KTE220]
gi|431043750|gb|ELD54031.1| 30S ribosomal protein S1 [Escherichia coli KTE228]
gi|431044192|gb|ELD54472.1| 30S ribosomal protein S1 [Escherichia coli KTE224]
gi|431054303|gb|ELD63884.1| 30S ribosomal protein S1 [Escherichia coli KTE230]
gi|431056619|gb|ELD66120.1| 30S ribosomal protein S1 [Escherichia coli KTE233]
gi|431062859|gb|ELD72119.1| 30S ribosomal protein S1 [Escherichia coli KTE234]
gi|431072549|gb|ELD80300.1| 30S ribosomal protein S1 [Escherichia coli KTE235]
gi|431076549|gb|ELD84044.1| 30S ribosomal protein S1 [Escherichia coli KTE236]
gi|431083701|gb|ELD89873.1| 30S ribosomal protein S1 [Escherichia coli KTE237]
gi|431085628|gb|ELD91732.1| 30S ribosomal protein S1 [Escherichia coli KTE47]
gi|431093498|gb|ELD99163.1| 30S ribosomal protein S1 [Escherichia coli KTE49]
gi|431097471|gb|ELE02799.1| 30S ribosomal protein S1 [Escherichia coli KTE51]
gi|431102063|gb|ELE06968.1| 30S ribosomal protein S1 [Escherichia coli KTE53]
gi|431107598|gb|ELE11763.1| 30S ribosomal protein S1 [Escherichia coli KTE56]
gi|431110100|gb|ELE14027.1| 30S ribosomal protein S1 [Escherichia coli KTE55]
gi|431122889|gb|ELE25641.1| 30S ribosomal protein S1 [Escherichia coli KTE58]
gi|431131875|gb|ELE33891.1| 30S ribosomal protein S1 [Escherichia coli KTE60]
gi|431132578|gb|ELE34577.1| 30S ribosomal protein S1 [Escherichia coli KTE62]
gi|431140178|gb|ELE41955.1| 30S ribosomal protein S1 [Escherichia coli KTE67]
gi|431142382|gb|ELE44130.1| 30S ribosomal protein S1 [Escherichia coli KTE66]
gi|431150925|gb|ELE51967.1| 30S ribosomal protein S1 [Escherichia coli KTE72]
gi|431156428|gb|ELE57101.1| 30S ribosomal protein S1 [Escherichia coli KTE75]
gi|431161515|gb|ELE61986.1| 30S ribosomal protein S1 [Escherichia coli KTE76]
gi|431164464|gb|ELE64855.1| 30S ribosomal protein S1 [Escherichia coli KTE77]
gi|431173078|gb|ELE73159.1| 30S ribosomal protein S1 [Escherichia coli KTE81]
gi|431173568|gb|ELE73644.1| 30S ribosomal protein S1 [Escherichia coli KTE80]
gi|431182572|gb|ELE82389.1| 30S ribosomal protein S1 [Escherichia coli KTE86]
gi|431183995|gb|ELE83761.1| 30S ribosomal protein S1 [Escherichia coli KTE83]
gi|431192924|gb|ELE92268.1| 30S ribosomal protein S1 [Escherichia coli KTE87]
gi|431193790|gb|ELE93064.1| 30S ribosomal protein S1 [Escherichia coli KTE93]
gi|431202010|gb|ELF00706.1| 30S ribosomal protein S1 [Escherichia coli KTE111]
gi|431202839|gb|ELF01516.1| 30S ribosomal protein S1 [Escherichia coli KTE116]
gi|431212386|gb|ELF10313.1| 30S ribosomal protein S1 [Escherichia coli KTE119]
gi|431217076|gb|ELF14663.1| 30S ribosomal protein S1 [Escherichia coli KTE142]
gi|431223595|gb|ELF20841.1| 30S ribosomal protein S1 [Escherichia coli KTE143]
gi|431229221|gb|ELF25873.1| 30S ribosomal protein S1 [Escherichia coli KTE161]
gi|431236325|gb|ELF31538.1| 30S ribosomal protein S1 [Escherichia coli KTE162]
gi|431246047|gb|ELF40325.1| 30S ribosomal protein S1 [Escherichia coli KTE171]
gi|431246405|gb|ELF40671.1| 30S ribosomal protein S1 [Escherichia coli KTE169]
gi|431251478|gb|ELF45495.1| 30S ribosomal protein S1 [Escherichia coli KTE6]
gi|431258698|gb|ELF51461.1| 30S ribosomal protein S1 [Escherichia coli KTE8]
gi|431265068|gb|ELF56765.1| 30S ribosomal protein S1 [Escherichia coli KTE9]
gi|431267495|gb|ELF59012.1| 30S ribosomal protein S1 [Escherichia coli KTE17]
gi|431274794|gb|ELF65839.1| 30S ribosomal protein S1 [Escherichia coli KTE18]
gi|431277879|gb|ELF68883.1| 30S ribosomal protein S1 [Escherichia coli KTE45]
gi|431285283|gb|ELF76119.1| 30S ribosomal protein S1 [Escherichia coli KTE23]
gi|431285951|gb|ELF76786.1| 30S ribosomal protein S1 [Escherichia coli KTE42]
gi|431294359|gb|ELF84539.1| 30S ribosomal protein S1 [Escherichia coli KTE43]
gi|431298682|gb|ELF88306.1| 30S ribosomal protein S1 [Escherichia coli KTE29]
gi|431304902|gb|ELF93426.1| 30S ribosomal protein S1 [Escherichia coli KTE22]
gi|431310641|gb|ELF98822.1| 30S ribosomal protein S1 [Escherichia coli KTE46]
gi|431312812|gb|ELG00801.1| 30S ribosomal protein S1 [Escherichia coli KTE48]
gi|431317218|gb|ELG04998.1| 30S ribosomal protein S1 [Escherichia coli KTE50]
gi|431319455|gb|ELG07125.1| 30S ribosomal protein S1 [Escherichia coli KTE54]
gi|431329995|gb|ELG17280.1| 30S ribosomal protein S1 [Escherichia coli KTE59]
gi|431331191|gb|ELG18454.1| 30S ribosomal protein S1 [Escherichia coli KTE63]
gi|431340641|gb|ELG27662.1| 30S ribosomal protein S1 [Escherichia coli KTE65]
gi|431341232|gb|ELG28245.1| 30S ribosomal protein S1 [Escherichia coli KTE78]
gi|431344244|gb|ELG31182.1| 30S ribosomal protein S1 [Escherichia coli KTE79]
gi|431350178|gb|ELG36996.1| 30S ribosomal protein S1 [Escherichia coli KTE84]
gi|431356222|gb|ELG42913.1| 30S ribosomal protein S1 [Escherichia coli KTE101]
gi|431356649|gb|ELG43339.1| 30S ribosomal protein S1 [Escherichia coli KTE91]
gi|431366783|gb|ELG53280.1| 30S ribosomal protein S1 [Escherichia coli KTE115]
gi|431370427|gb|ELG56228.1| 30S ribosomal protein S1 [Escherichia coli KTE118]
gi|431379233|gb|ELG64167.1| 30S ribosomal protein S1 [Escherichia coli KTE135]
gi|431386873|gb|ELG70826.1| 30S ribosomal protein S1 [Escherichia coli KTE136]
gi|431391042|gb|ELG74690.1| 30S ribosomal protein S1 [Escherichia coli KTE140]
gi|431396748|gb|ELG80215.1| 30S ribosomal protein S1 [Escherichia coli KTE141]
gi|431401368|gb|ELG84712.1| 30S ribosomal protein S1 [Escherichia coli KTE144]
gi|431404071|gb|ELG87329.1| 30S ribosomal protein S1 [Escherichia coli KTE147]
gi|431406720|gb|ELG89939.1| 30S ribosomal protein S1 [Escherichia coli KTE146]
gi|431412874|gb|ELG95673.1| 30S ribosomal protein S1 [Escherichia coli KTE154]
gi|431418448|gb|ELH00843.1| 30S ribosomal protein S1 [Escherichia coli KTE158]
gi|431424623|gb|ELH06719.1| 30S ribosomal protein S1 [Escherichia coli KTE165]
gi|431428565|gb|ELH10506.1| 30S ribosomal protein S1 [Escherichia coli KTE192]
gi|431435334|gb|ELH16945.1| 30S ribosomal protein S1 [Escherichia coli KTE194]
gi|431443184|gb|ELH24261.1| 30S ribosomal protein S1 [Escherichia coli KTE190]
gi|431446310|gb|ELH27059.1| 30S ribosomal protein S1 [Escherichia coli KTE173]
gi|431448140|gb|ELH28858.1| 30S ribosomal protein S1 [Escherichia coli KTE175]
gi|431452389|gb|ELH32834.1| 30S ribosomal protein S1 [Escherichia coli KTE183]
gi|431455118|gb|ELH35474.1| 30S ribosomal protein S1 [Escherichia coli KTE184]
gi|431461592|gb|ELH41859.1| 30S ribosomal protein S1 [Escherichia coli KTE196]
gi|431469508|gb|ELH49437.1| 30S ribosomal protein S1 [Escherichia coli KTE197]
gi|431472980|gb|ELH52814.1| 30S ribosomal protein S1 [Escherichia coli KTE203]
gi|431477695|gb|ELH57457.1| 30S ribosomal protein S1 [Escherichia coli KTE202]
gi|431481076|gb|ELH60790.1| 30S ribosomal protein S1 [Escherichia coli KTE209]
gi|431485329|gb|ELH64991.1| 30S ribosomal protein S1 [Escherichia coli KTE207]
gi|431493275|gb|ELH72869.1| 30S ribosomal protein S1 [Escherichia coli KTE211]
gi|431496880|gb|ELH76458.1| 30S ribosomal protein S1 [Escherichia coli KTE217]
gi|431504546|gb|ELH83171.1| 30S ribosomal protein S1 [Escherichia coli KTE215]
gi|431508850|gb|ELH87121.1| 30S ribosomal protein S1 [Escherichia coli KTE218]
gi|431513395|gb|ELH91478.1| 30S ribosomal protein S1 [Escherichia coli KTE223]
gi|431517700|gb|ELH95222.1| 30S ribosomal protein S1 [Escherichia coli KTE227]
gi|431518249|gb|ELH95769.1| 30S ribosomal protein S1 [Escherichia coli KTE229]
gi|431534260|gb|ELI10744.1| 30S ribosomal protein S1 [Escherichia coli KTE104]
gi|431535861|gb|ELI12197.1| 30S ribosomal protein S1 [Escherichia coli KTE105]
gi|431539503|gb|ELI15254.1| 30S ribosomal protein S1 [Escherichia coli KTE106]
gi|431544932|gb|ELI19742.1| 30S ribosomal protein S1 [Escherichia coli KTE109]
gi|431554123|gb|ELI28005.1| 30S ribosomal protein S1 [Escherichia coli KTE113]
gi|431558530|gb|ELI32148.1| 30S ribosomal protein S1 [Escherichia coli KTE112]
gi|431559200|gb|ELI32771.1| 30S ribosomal protein S1 [Escherichia coli KTE117]
gi|431570408|gb|ELI43320.1| 30S ribosomal protein S1 [Escherichia coli KTE120]
gi|431573320|gb|ELI46125.1| 30S ribosomal protein S1 [Escherichia coli KTE124]
gi|431574727|gb|ELI47490.1| 30S ribosomal protein S1 [Escherichia coli KTE122]
gi|431586785|gb|ELI58171.1| 30S ribosomal protein S1 [Escherichia coli KTE125]
gi|431589695|gb|ELI60908.1| 30S ribosomal protein S1 [Escherichia coli KTE128]
gi|431600027|gb|ELI69704.1| 30S ribosomal protein S1 [Escherichia coli KTE131]
gi|431605673|gb|ELI75062.1| 30S ribosomal protein S1 [Escherichia coli KTE133]
gi|431608894|gb|ELI78231.1| 30S ribosomal protein S1 [Escherichia coli KTE137]
gi|431613204|gb|ELI82404.1| 30S ribosomal protein S1 [Escherichia coli KTE138]
gi|431618755|gb|ELI87689.1| 30S ribosomal protein S1 [Escherichia coli KTE139]
gi|431621879|gb|ELI90669.1| 30S ribosomal protein S1 [Escherichia coli KTE145]
gi|431630200|gb|ELI98538.1| 30S ribosomal protein S1 [Escherichia coli KTE150]
gi|431633069|gb|ELJ01351.1| 30S ribosomal protein S1 [Escherichia coli KTE148]
gi|431636226|gb|ELJ04384.1| 30S ribosomal protein S1 [Escherichia coli KTE153]
gi|431648910|gb|ELJ16277.1| 30S ribosomal protein S1 [Escherichia coli KTE160]
gi|431650547|gb|ELJ17865.1| 30S ribosomal protein S1 [Escherichia coli KTE163]
gi|431661189|gb|ELJ28005.1| 30S ribosomal protein S1 [Escherichia coli KTE166]
gi|431663997|gb|ELJ30739.1| 30S ribosomal protein S1 [Escherichia coli KTE167]
gi|431664893|gb|ELJ31621.1| 30S ribosomal protein S1 [Escherichia coli KTE168]
gi|431676024|gb|ELJ42148.1| 30S ribosomal protein S1 [Escherichia coli KTE174]
gi|431677679|gb|ELJ43753.1| 30S ribosomal protein S1 [Escherichia coli KTE176]
gi|431680904|gb|ELJ46717.1| 30S ribosomal protein S1 [Escherichia coli KTE177]
gi|431691419|gb|ELJ56879.1| 30S ribosomal protein S1 [Escherichia coli KTE179]
gi|431692731|gb|ELJ58155.1| 30S ribosomal protein S1 [Escherichia coli KTE180]
gi|431695454|gb|ELJ60761.1| 30S ribosomal protein S1 [Escherichia coli KTE232]
gi|431708698|gb|ELJ73206.1| 30S ribosomal protein S1 [Escherichia coli KTE88]
gi|431708971|gb|ELJ73472.1| 30S ribosomal protein S1 [Escherichia coli KTE82]
gi|431719787|gb|ELJ83837.1| 30S ribosomal protein S1 [Escherichia coli KTE90]
gi|431724589|gb|ELJ88506.1| 30S ribosomal protein S1 [Escherichia coli KTE94]
gi|431725097|gb|ELJ89008.1| 30S ribosomal protein S1 [Escherichia coli KTE95]
gi|431732241|gb|ELJ95697.1| 30S ribosomal protein S1 [Escherichia coli KTE97]
gi|431735721|gb|ELJ99067.1| 30S ribosomal protein S1 [Escherichia coli KTE99]
gi|432349174|gb|ELL43604.1| 30S ribosomal protein S1 [Escherichia coli J96]
gi|441604532|emb|CCP98278.1| SSU ribosomal protein S1p [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|441651277|emb|CCQ02979.1| SSU ribosomal protein S1p [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441712537|emb|CCQ07238.1| SSU ribosomal protein S1p [Escherichia coli Nissle 1917]
gi|443421534|gb|AGC86438.1| 30S ribosomal protein S1 [Escherichia coli APEC O78]
gi|444541786|gb|ELV21230.1| ribosomal protein S1 [Escherichia coli 99.0814]
gi|444547730|gb|ELV26287.1| ribosomal protein S1 [Escherichia coli 99.0815]
gi|444549350|gb|ELV27600.1| ribosomal protein S1 [Escherichia coli 09BKT078844]
gi|444558794|gb|ELV36055.1| ribosomal protein S1 [Escherichia coli 99.0816]
gi|444563997|gb|ELV40966.1| ribosomal protein S1 [Escherichia coli 99.0839]
gi|444570044|gb|ELV46594.1| ribosomal protein S1 [Escherichia coli 99.0848]
gi|444580859|gb|ELV56745.1| ribosomal protein S1 [Escherichia coli 99.1753]
gi|444584070|gb|ELV59741.1| ribosomal protein S1 [Escherichia coli 99.1775]
gi|444585357|gb|ELV60935.1| ribosomal protein S1 [Escherichia coli 99.1793]
gi|444598512|gb|ELV73431.1| ribosomal protein S1 [Escherichia coli ATCC 700728]
gi|444599043|gb|ELV73942.1| ribosomal protein S1 [Escherichia coli PA11]
gi|444606637|gb|ELV81244.1| ribosomal protein S1 [Escherichia coli 99.1805]
gi|444607315|gb|ELV81893.1| ribosomal protein S1 [Escherichia coli PA13]
gi|444613039|gb|ELV87303.1| ribosomal protein S1 [Escherichia coli PA19]
gi|444621591|gb|ELV95566.1| ribosomal protein S1 [Escherichia coli PA2]
gi|444630120|gb|ELW03785.1| ribosomal protein S1 [Escherichia coli PA8]
gi|444631313|gb|ELW04917.1| ribosomal protein S1 [Escherichia coli PA48]
gi|444631576|gb|ELW05174.1| ribosomal protein S1 [Escherichia coli PA47]
gi|444646723|gb|ELW19725.1| ribosomal protein S1 [Escherichia coli 7.1982]
gi|444648791|gb|ELW21705.1| ribosomal protein S1 [Escherichia coli 99.1781]
gi|444652209|gb|ELW24977.1| ribosomal protein S1 [Escherichia coli 99.1762]
gi|444661578|gb|ELW33874.1| ribosomal protein S1 [Escherichia coli PA35]
gi|444665774|gb|ELW37873.1| ribosomal protein S1 [Escherichia coli 3.4880]
gi|444671757|gb|ELW43539.1| ribosomal protein S1 [Escherichia coli 95.0083]
gi|444673884|gb|ELW45480.1| ribosomal protein S1 [Escherichia coli 99.0670]
gi|449321391|gb|EMD11404.1| 30S ribosomal protein S1 [Escherichia coli O08]
gi|449323822|gb|EMD13769.1| 30S ribosomal protein S1 [Escherichia coli SEPT362]
gi|449324018|gb|EMD13959.1| 30S ribosomal protein S1 [Escherichia coli S17]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|325268084|ref|ZP_08134730.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
gi|324980469|gb|EGC16135.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
Length = 563
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G T+ + + + + +++ +ADW E G I G I G
Sbjct: 63 GDLEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMEDGVILSGVINGKVK 122
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ + ++S + +
Sbjct: 123 GGLTVMINSIRAFLPGSLVDVRPIKDTSHFEGKEVEFKVIKLDRKRNNVVVSRRAV---- 178
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ V+ I DYGAF+ L DGL +H+++++W
Sbjct: 179 -LEATLGEERKALMENLQEGTLVKGIVKNITDYGAFVDLGGIDGL------LHITDLAWR 231
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
++ ++L G EV KV++ D++K R++L +KQL EDP + L + PQG
Sbjct: 232 RVKHPSEVLEVGQEVEAKVLRFDQDKQRVSLGLKQLGEDP-WDGLARRYPQG 282
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 276 ARRYPQGHRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V ++ +E+ +++ K W + + D G D+G F+ L
Sbjct: 329 LGDEVEVMILDIDEDKRRISLGMKQCQPNPWQDFEANFKKGDKIKGAVKSITDFGVFVGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE
Sbjct: 389 --PG---NIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
>gi|402842615|ref|ZP_10891027.1| ribosomal protein S1 [Klebsiella sp. OBRC7]
gi|402279557|gb|EJU28342.1| ribosomal protein S1 [Klebsiella sp. OBRC7]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV------W---NKYSSRVNVEDIFVGRDYGA 199
KG I+ V+Q + E +++ K W NK + VN + V GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKVTAVDA-KGA 466
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS++
Sbjct: 467 TVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSVRA 521
Query: 260 LEE 262
+E
Sbjct: 522 KDE 524
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKNNP 353
>gi|399053696|ref|ZP_10742495.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|433544588|ref|ZP_20500968.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
gi|398048473|gb|EJL40945.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|432184167|gb|ELK41688.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
Length = 390
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 28/194 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W +SG I E ++ GGL+V + GF+P M H ++
Sbjct: 95 WAELEQKMQSGEIIEATVKEVVKGGLVVDV-GVRGFIP-ASMVERHFVED--------FS 144
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DY 197
G +++KV++ ++E K++ S K + + ++ ++ I VG+ D+
Sbjct: 145 DYKGKSLTLKVVEMDKEKNKVILSHKAVLEEEAKAKKQSVLDQIQVGQVLEGTVQRMTDF 204
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
G F+ + DGL VHVSE++W+ ++ D++ EGD+V+VKV+KIDRE RI LSI
Sbjct: 205 GVFVDIGGVDGL------VHVSELAWNRVEKPSDVVKEGDKVQVKVLKIDRENERIGLSI 258
Query: 258 KQLEEDPLLETLEK 271
K+ + P + E+
Sbjct: 259 KETQAGPWAKVAEE 272
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 27/186 (14%)
Query: 93 ARAYKES-------GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIH 145
A+A K+S G + EG +Q G+ V + G + +++ + ++P +
Sbjct: 177 AKAKKQSVLDQIQVGQVLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNR-VEKPSDVVK 235
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DY 197
E G + VKV++ + E +++ S K+ W K + I G +
Sbjct: 236 E------GDKVQVKVLKIDRENERIGLSIKETQAGPWAKVAEEFKAGSITTGTVKRLVSF 289
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + + GLVH+S+++ + ++L EG EV+VK++ + ++ RI+LSI
Sbjct: 290 GAFVEV-----APGIEGLVHISQIANRRVNTPGEVLKEGQEVQVKILDVVPQEQRISLSI 344
Query: 258 KQLEED 263
+ +EED
Sbjct: 345 RAVEED 350
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK----DAVW 179
G +P ++SP H K + ++ G VKVI+ N+E ++LV S+K ++ W
Sbjct: 43 GLIPISELSPLHVEK-----VSDVV--AVGDTFEVKVIKLNDEKEELVVSKKAVAMESSW 95
Query: 180 NKYSSRVNVEDIFVGRDYGAFIHLRFPDGLY---HLTGLVHVSEVSWDLIQDIRDILNEG 236
+ ++ +I A + GL + G + S V ++D D +G
Sbjct: 96 AELEQKMQSGEII-----EATVKEVVKGGLVVDVGVRGFIPASMVERHFVEDFSDY--KG 148
Query: 237 DEVRVKVIKIDREKSRITLSIKQ-LEED 263
+ +KV+++D+EK+++ LS K LEE+
Sbjct: 149 KSLTLKVVEMDKEKNKVILSHKAVLEEE 176
>gi|149377379|ref|ZP_01895123.1| ribosomal protein S1 [Marinobacter algicola DG893]
gi|149358303|gb|EDM46781.1| ribosomal protein S1 [Marinobacter algicola DG893]
Length = 564
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 20/236 (8%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ + ++ + D + + +++ + WK E+ + +G I
Sbjct: 54 LNEKGELEVAIGDVVDVALDAVEDGFGETRLSREKAKRAEAWKVLEKSFEAEEVVKGVIN 113
Query: 109 GFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVI 161
G GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 114 GKVKGGFTVDLAGIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAV 173
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
E +E++A+ + + ++ I DYGAF+ L DGL H+T +
Sbjct: 174 LEAENS-----AEREALLETLTEGLEIKGIVKNLTDYGAFVDLGGVDGLLHIT------D 222
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP ++ ++ P+G
Sbjct: 223 MAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSLGLKQLGEDPWVD-IKGRYPEG 277
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVGVMILDIDEERRRISLGIKQCVANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+SS+ N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 DFSSKFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 410 KKGDEVETVILSVDPERERISLGIKQLESDPFAE 443
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ ++ SE+S D ++D R+ LNEGDEV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALNEGDEVEAKIISIDRKNRVINLSVKSKDVEDDKQALE 532
Query: 271 KVIPQGLE 278
V + E
Sbjct: 533 GVRAKAAE 540
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLTEGLEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W R R
Sbjct: 234 IVN------VGDEINVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGTKVTARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCVANP 353
>gi|375259993|ref|YP_005019163.1| 30S ribosomal protein S1 [Klebsiella oxytoca KCTC 1686]
gi|397657067|ref|YP_006497769.1| 30S ribosomal protein S1 [Klebsiella oxytoca E718]
gi|421727800|ref|ZP_16166958.1| 30S ribosomal protein S1 [Klebsiella oxytoca M5al]
gi|423102258|ref|ZP_17089960.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5242]
gi|423107606|ref|ZP_17095301.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5243]
gi|423113549|ref|ZP_17101240.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5245]
gi|423128360|ref|ZP_17116039.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5250]
gi|365909471|gb|AEX04924.1| 30S ribosomal protein S1 [Klebsiella oxytoca KCTC 1686]
gi|376387818|gb|EHT00521.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5243]
gi|376388235|gb|EHT00935.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5245]
gi|376389841|gb|EHT02530.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5242]
gi|376393716|gb|EHT06372.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5250]
gi|394345575|gb|AFN31696.1| SSU ribosomal protein S1p [Klebsiella oxytoca E718]
gi|410371283|gb|EKP26006.1| 30S ribosomal protein S1 [Klebsiella oxytoca M5al]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWITLEKAYEDAETVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNP 353
>gi|312959704|ref|ZP_07774221.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
gi|311286421|gb|EFQ64985.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
Length = 560
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L++ +P+
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKETVPE 542
Query: 276 GLEPYLKSFYKKMV 289
+ + + ++ +
Sbjct: 543 ATDTTMAALLRQAM 556
>gi|424924245|ref|ZP_18347606.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
gi|404305405|gb|EJZ59367.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
Length = 562
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|406960354|gb|EKD87440.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 374
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 23/189 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK A ++SG E ++ GGLLV + L G++P Q+ + S K+ K+
Sbjct: 112 WKDLVAKQKSGVPVEVIVKDPVRGGLLVDYGGLRGYIPQSQLDGAFS-KQLDKT------ 164
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVN-------VEDIFVGR-DY 197
+G I VKV++ +E +LVFS++ +A ++ ++ VE G +
Sbjct: 165 --SGRRIQVKVVEVEKETNRLVFSQRAMSEEAALSRQKELIDLIKVGEAVEATITGVVPF 222
Query: 198 GAFIHLRFP--DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
GAF D + + GL+H+SE++W+ + D L GD ++VK+I +D ++TL
Sbjct: 223 GAFAKFTVTKDDKKHDVEGLIHISEIAWEKVDDPGQYLKVGDSLKVKIIGVDEMSGKLTL 282
Query: 256 SIKQLEEDP 264
S+KQL DP
Sbjct: 283 SLKQLLPDP 291
>gi|398964539|ref|ZP_10680357.1| ribosomal protein S1 [Pseudomonas sp. GM30]
gi|398148257|gb|EJM36941.1| ribosomal protein S1 [Pseudomonas sp. GM30]
Length = 561
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K P+
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KAAPE 541
Query: 276 G 276
G
Sbjct: 542 G 542
>gi|408482966|ref|ZP_11189185.1| 30S ribosomal protein S1 [Pseudomonas sp. R81]
Length = 561
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETL 269
SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSL 536
>gi|387892910|ref|YP_006323207.1| 30S ribosomal protein S1 [Pseudomonas fluorescens A506]
gi|423690710|ref|ZP_17665230.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
gi|387163095|gb|AFJ58294.1| ribosomal protein S1 [Pseudomonas fluorescens A506]
gi|388001434|gb|EIK62763.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
Length = 561
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ + SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQS 535
Query: 269 LEKVIPQG 276
L++ P+
Sbjct: 536 LKEAAPEA 543
>gi|398850879|ref|ZP_10607574.1| ribosomal protein S1 [Pseudomonas sp. GM80]
gi|398247727|gb|EJN33162.1| ribosomal protein S1 [Pseudomonas sp. GM80]
Length = 561
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG+EV K+I +DR+ I LSIK EE +++L K P+
Sbjct: 483 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KAAPE 541
Query: 276 G 276
G
Sbjct: 542 G 542
>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 322
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ I N GG LVR L GF+P +S ++P++
Sbjct: 107 WERVRQLQKEDATVRSTIFATNRGGALVRIEGLRGFIPGSHIS----TRKPKEE------ 156
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ NK V G + YGAFI +
Sbjct: 157 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKPYGAFIDI- 214
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D + + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 215 -----GGVSGLLHISEISHDHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPNP 269
>gi|392989866|ref|YP_006488459.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
gi|392337286|gb|AFM71568.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
Length = 410
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G++ G V + G + ++S SH K P ++ G + VK
Sbjct: 205 GDVIDGRVARITDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDAL------AVGDEVKVK 257
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD + W + V + G+ +GAF+ + FP
Sbjct: 258 VLSINPEQERVSLSIKDTLPGPWTDIEEKATVGSVLDGKVKRLTSFGAFVEV-FPG---- 312
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV+++ E+ RI LSIK LEE P E
Sbjct: 313 VEGLVHISQISHKHIATPHEVLHEGDEVQVKVLEVHPEEHRIALSIKALEEKPASEEE-- 370
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 371 --PKDVETY 377
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 28/194 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ ++G I E + GGL+V + GF+P M H + +
Sbjct: 109 WEDIEKDFQAGNIIEAPVTNVVKGGLVVDV-GVRGFVP-ASMVEDHFVADFSE------- 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DY 197
G ++ K+++ +L+ S K V + + ++ D+ GR D+
Sbjct: 160 -YKGETLAFKIVEIEPSENRLILSHKAVVETEKEEKKKEILANIHEGDVIDGRVARITDF 218
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ L DGL VHVSE+S + D L GDEV+VKV+ I+ E+ R++LSI
Sbjct: 219 GAFVDLGGIDGL------VHVSEISHSHVAKPSDALAVGDEVKVKVLSINPEQERVSLSI 272
Query: 258 KQLEEDPLLETLEK 271
K P + EK
Sbjct: 273 KDTLPGPWTDIEEK 286
>gi|388469683|ref|ZP_10143892.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
gi|388006380|gb|EIK67646.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
Length = 561
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L++ P+
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKEAAPE 542
Query: 276 G 276
Sbjct: 543 A 543
>gi|223404|prf||0804233A protein S1
Length = 557
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELDGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4]
gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE-------DIFVG-----RDYGAF 200
G + V+VI+ N++ +V S K+ + + +SR +V I G DYGAF
Sbjct: 219 GQQLDVRVIKLNKKRGNVVISRKEILEEEQNSRKDVTLQTLEEGSIMTGVVKNLTDYGAF 278
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DGL H+T ++SW + RD++ GDE++VKV+K D+EK R++L KQL
Sbjct: 279 VDLGGLDGLLHIT------DMSWGRLTHPRDLVQVGDEIQVKVLKFDKEKQRVSLGFKQL 332
Query: 261 EEDPLLETLEK 271
DP L+ +E+
Sbjct: 333 TPDPWLDAIER 343
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I G ++ G V L G L MS P+ + G I
Sbjct: 260 EEGSIMTGVVKNLTDYGAFVDLGGLDGLLHITDMSWGR-LTHPRDLVQ------VGDEIQ 312
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ ++E +++ K W R + GR DYGAF+ L
Sbjct: 313 VKVLKFDKEKQRVSLGFKQLTPDPWLDAIERYPIGAQVKGRILSVTDYGAFVELE----- 367
Query: 210 YHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVHVSE++W ++ ++ GDE ++ ++ RI+L +KQL+++P E
Sbjct: 368 QGIEGLVHVSEMTWSKRMKHPSKMVKPGDEADTIILAVNPTDRRISLGMKQLQDNP-WEQ 426
Query: 269 LEKVIPQG 276
LE P G
Sbjct: 427 LENKYPIG 434
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I EG+++ G + + G + +S + K P + + + G +
Sbjct: 434 GEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKK------GEKVRA 487
Query: 159 KVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
V+ E ++L K VW+ + ++ V D+ G+ +G F+ +
Sbjct: 488 VVLGVEPENRRLSLGVKQLEPDVWDTFFAQHRVGDVVKGKVLRSAQFGTFVEI-----AE 542
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL HVSE +L Q + L G E+ K++K+ +E+ ++ LS++ + E+
Sbjct: 543 GVEGLCHVSEAVNELHQPV--TLEPGQEMEFKIVKMSQEEKKVGLSLRGIGEE 593
>gi|432684748|ref|ZP_19920057.1| 30S ribosomal protein S1 [Escherichia coli KTE156]
gi|431223883|gb|ELF21127.1| 30S ribosomal protein S1 [Escherichia coli KTE156]
Length = 557
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>gi|402836938|ref|ZP_10885469.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Mogibacterium
sp. CM50]
gi|402269954|gb|EJU19223.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Mogibacterium
sp. CM50]
Length = 656
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 30/197 (15%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R + + + AA+A KE I K+ G++ + + GF+P Q+S +
Sbjct: 382 RLEMNENFKELAAAQANKE---IISVKLVKSVNSGVIAAYKEISGFIPLSQLSDRYV--- 435
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-------NVEDIF 192
E A G + V+VI+ + + + VFS K + ++ ++ NV DI
Sbjct: 436 ------ENADEFLGQTVDVEVIKVDNKRNRAVFSRKAVLVDEKRKQIAEIWANLNVGDIV 489
Query: 193 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
G+ DYGAF+ + DGL +H+SE+SW ++ +++LN GD + VK++ ++
Sbjct: 490 EGKVMRFTDYGAFVDIGGVDGL------LHISEISWGKLKHPKEVLNIGDIINVKILALN 543
Query: 248 REKSRITLSIKQLEEDP 264
EK +I+L +KQ + +P
Sbjct: 544 EEKGKISLGLKQTQPEP 560
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 20/169 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I EGK+ F G V + G L ++S K P++ ++ G II+VK
Sbjct: 486 GDIVEGKVMRFTDYGAFVDIGGVDGLLHISEISWG-KLKHPKEVLN------IGDIINVK 538
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
++ NEE K+ K W+ S+ V + G+ DYGAF+ L
Sbjct: 539 ILALNEEKGKISLGLKQTQPEPWSLVGSKYEVGQVIEGKVVQIKDYGAFVELEAG----- 593
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
L GLVH+SE++ ++++ D L G + K+++ID ++ RI+LSIK L
Sbjct: 594 LDGLVHISEIANRRVENVSDELELGKIITAKIMEIDVDRKRISLSIKAL 642
>gi|253990303|ref|YP_003041659.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
gi|253781753|emb|CAQ84916.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
Length = 569
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 98 REKAKRHEAWLMLEKAYEDAETVM-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 152
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 153 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 207
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 208 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 261
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 262 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 366 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVTGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L IKQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGIKQLAEDPF 453
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 187 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 245
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 246 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 299
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 300 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 354 ISLGLKQCKANP 365
>gi|398985770|ref|ZP_10691236.1| ribosomal protein S1 [Pseudomonas sp. GM24]
gi|399011102|ref|ZP_10713435.1| ribosomal protein S1 [Pseudomonas sp. GM16]
gi|398118440|gb|EJM08171.1| ribosomal protein S1 [Pseudomonas sp. GM16]
gi|398153694|gb|EJM42190.1| ribosomal protein S1 [Pseudomonas sp. GM24]
Length = 560
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|406927465|gb|EKD63494.1| RNA binding S1 protein [uncultured bacterium]
Length = 376
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 80 RQSQSRSSADWKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH--- 135
R SQ +S W+ A AY E+ I E + N GGLL+ + GF+P Q++P H
Sbjct: 93 RASQEKS---WQRFADAY-ENNNIIEVRPNEANKGGLLLEIDGIKGFIPVSQLAPLHYPR 148
Query: 136 -SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVNVEDI 191
+ + + ++ K L G + KVI +++ KL+ SEK A + + ++ V
Sbjct: 149 VNGADSGMILQKLNK-LIGQLFDCKVIGLDKDNGKLILSEKAAQSAQRDTAMKKLKVGQK 207
Query: 192 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
GR +G F+ DGL GLVH+SE++W + D D GDEV V VI +
Sbjct: 208 VKGRISGVVKFGIFVAF---DGL---EGLVHISEIAWGHVSDPSDYGRVGDEVEVLVIGV 261
Query: 247 DREKSRITLSIKQLEEDPLLETLEK 271
D +K I+LS+K+L DP ++ +K
Sbjct: 262 DNDK--ISLSMKRLTPDPWIDAAQK 284
>gi|150017403|ref|YP_001309657.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
beijerinckii NCIMB 8052]
gi|149903868|gb|ABR34701.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
beijerinckii NCIMB 8052]
Length = 635
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 21/186 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S++S D KA ++ G + +G+++ F G V + G L Q+S +H K
Sbjct: 463 ESKNSEDAKAWESFN-LGDVIKGEVKRFTDFGAFVEVNGIDGLLHLSQISWNHI-----K 516
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
+ ++ K G II VK+I ++E KKL S K+ V W+ + I +G+
Sbjct: 517 KVSDVLK--EGQIIDVKIIGLDKEAKKLSLSIKELVAKPWDNAKEKYPEGSIVLGKVVRL 574
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
D+GAF+ L P + GLVH+S++S + I+ ++L G+E++ K++ +D E RI+
Sbjct: 575 NDFGAFVELE-PG----VDGLVHISKISHNRIEHPSEVLKIGEEIKAKILSVDEENKRIS 629
Query: 255 LSIKQL 260
LSIK +
Sbjct: 630 LSIKDV 635
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 16/109 (14%)
Query: 173 SEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 227
SE W + N+ D+ G D+GAF+ + DGL HL S++SW+ I+
Sbjct: 467 SEDAKAWESF----NLGDVIKGEVKRFTDFGAFVEVNGIDGLLHL------SQISWNHIK 516
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+ D+L EG + VK+I +D+E +++LSIK+L P EK P+G
Sbjct: 517 KVSDVLKEGQIIDVKIIGLDKEAKKLSLSIKELVAKPWDNAKEKY-PEG 564
>gi|329298228|ref|ZP_08255564.1| 30S ribosomal protein S1 [Plautia stali symbiont]
Length = 557
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPGEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 16/116 (13%)
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 212 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ + + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYITLNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK-- 258
+ L DG+ G + SE S D I+D +L+ GD+V+ K +DR+ ++LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASLDRIEDATQVLSVGDDVKAKFTGVDRKNRVVSLSVRAK 522
Query: 259 -QLEEDPLLETL 269
Q +E + T+
Sbjct: 523 DQADEKEAINTV 534
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPGE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|398868645|ref|ZP_10624041.1| ribosomal protein S1 [Pseudomonas sp. GM78]
gi|398232858|gb|EJN18810.1| ribosomal protein S1 [Pseudomonas sp. GM78]
Length = 564
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|398879374|ref|ZP_10634469.1| ribosomal protein S1 [Pseudomonas sp. GM67]
gi|398885421|ref|ZP_10640333.1| ribosomal protein S1 [Pseudomonas sp. GM60]
gi|398192549|gb|EJM79698.1| ribosomal protein S1 [Pseudomonas sp. GM60]
gi|398196537|gb|EJM83538.1| ribosomal protein S1 [Pseudomonas sp. GM67]
Length = 562
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K P+
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KTAPE 541
Query: 276 G 276
G
Sbjct: 542 G 542
>gi|395651191|ref|ZP_10439041.1| 30S ribosomal protein S1 [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 564
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETL 269
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEIEEKEAIQSL 536
>gi|419802506|ref|ZP_14327692.1| ribosomal protein S1 [Haemophilus parainfluenzae HK262]
gi|385190066|gb|EIF37516.1| ribosomal protein S1 [Haemophilus parainfluenzae HK262]
Length = 549
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY++
Sbjct: 48 IPVAEFQNAQGELEVKVGDTVNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEDKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIA 271
Query: 270 E 270
E
Sbjct: 272 E 272
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEV 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLE+DP
Sbjct: 391 VHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEDDPF 441
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|419844810|ref|ZP_14368097.1| ribosomal protein S1 [Haemophilus parainfluenzae HK2019]
gi|386416736|gb|EIJ31228.1| ribosomal protein S1 [Haemophilus parainfluenzae HK2019]
Length = 549
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY++
Sbjct: 48 IPVAEFQNAQGELEVKVGDTVNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEDKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIA 271
Query: 270 E 270
E
Sbjct: 272 E 272
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEV 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLE+DP
Sbjct: 391 VHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEDDPF 441
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|395499782|ref|ZP_10431361.1| 30S ribosomal protein S1 [Pseudomonas sp. PAMC 25886]
gi|395798599|ref|ZP_10477883.1| 30S ribosomal protein S1 [Pseudomonas sp. Ag1]
gi|421143521|ref|ZP_15603460.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BBc6R8]
gi|395337334|gb|EJF69191.1| 30S ribosomal protein S1 [Pseudomonas sp. Ag1]
gi|404505212|gb|EKA19243.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BBc6R8]
Length = 564
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|326794751|ref|YP_004312571.1| 30S ribosomal protein S1 [Marinomonas mediterranea MMB-1]
gi|326545515|gb|ADZ90735.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
Length = 560
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 40/246 (16%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+F+ N ++ + D + + +++ + W E G I G I
Sbjct: 54 LSESGEFTLNIGDEVKVALDAVEDGFGETKLSREKAKRAETWAVLEKAYEEGEIVTGIIN 113
Query: 109 GFNGGGLLVRFFSLVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
G GG V ++ FLP P SH L G + K+I+
Sbjct: 114 GKVKGGFTVDIANIRAFLPGSLVDVRPIRDTSH---------------LEGVDLEFKLIK 158
Query: 163 ANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLY 210
+++ +V S E++ + + V+ I DYGAF+ L DGL
Sbjct: 159 LDQKRNNVVVSRRAVMEATNSAERETLLSSLEEGQEVKGIVKNLTDYGAFVDLGGVDGLL 218
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L +KQL EDP + ++
Sbjct: 219 HIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AIK 271
Query: 271 KVIPQG 276
P+G
Sbjct: 272 ARYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTKVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAF 200
G + V V+ +EE +++ K W +++ N D G D+G F
Sbjct: 324 ---IGDEVEVMVLDIDEERRRISLGIKQCTPNPWEEFAGSFNKGDKISGAIKSITDFGVF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L DG + GLVH+S++SWD + +R +GD + V+ ID E+ RI+L +K
Sbjct: 381 IGL---DG--GIDGLVHLSDLSWDETGEEAVRQ-YKKGDLLETVVLSIDAERERISLGVK 434
Query: 259 QLEEDPLL 266
QL EDP +
Sbjct: 435 QLAEDPFI 442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + + E G +G ++ G V + G L M+ K P +
Sbjct: 175 EATNSAERETLLSSLEEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
I G I VKV++ + E ++ K A+ +Y V
Sbjct: 234 IIA------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTKVTARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L IKQ +P E
Sbjct: 342 ISLGIKQCTPNPWEE 356
>gi|229589170|ref|YP_002871289.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
gi|229361036|emb|CAY47898.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
Length = 563
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +T V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+GDE+ ++ +D E+ RI+L IKQLE DP E ++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQ 448
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|294140845|ref|YP_003556823.1| 30S ribosomal protein S1 [Shewanella violacea DSS12]
gi|293327314|dbj|BAJ02045.1| ribosomal protein S1 [Shewanella violacea DSS12]
Length = 555
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 33/219 (15%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFF 120
TV+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 67 TVHVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GVINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
+ FLP + + + + H L + KVI+ +++ +V S + + +
Sbjct: 126 GIRAFLPGSLVD----VRPVRDTAH-----LENKDLEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 181 KYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+ S+ + +E++ G+ DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ESSAERDALLENLQEGQAIKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+I+N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 231 PSEIVNVGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 28/155 (18%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIR 230
++ R N D G+ D+G FI L DG + GLVH+S++SW + + D +
Sbjct: 356 DFAERFNKGDKVTGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVADYK 410
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 ----KGDEINAVVLSVDPERERISLGVKQTEDDPF 441
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
>gi|114330421|ref|YP_746643.1| 30S ribosomal protein S1 [Nitrosomonas eutropha C91]
gi|114307435|gb|ABI58678.1| SSU ribosomal protein S1P [Nitrosomonas eutropha C91]
Length = 570
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 79 NRQSQSRSSAD-------WKAARAYKESGFIYEGKIQGFNGGGLL-----VRFF---SLV 123
N +SR S D W E G I G + G GGL +R F SLV
Sbjct: 86 NGYGESRLSRDKAKRLNAWYELEDAMEKGTIVTGMVNGKVKGGLTATINGIRAFLPGSLV 145
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS 183
P M+P + KE + + ++ + ++S + + +++ +++D +
Sbjct: 146 DIRPVKDMTP-YENKEMEFKVIKLDRKRNNVVVSRRAV-----LEETQGADRDELLASLQ 199
Query: 184 SRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 242
V+ I DYGAF+ L DGL H+T L +W ++ +++N GDEV K
Sbjct: 200 EGAVVQGIVKNITDYGAFVDLGGIDGLLHITDL------AWRRVKHPTEVINVGDEVSAK 253
Query: 243 VIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++K D+EK+R++L +KQL EDP + L + PQG + K
Sbjct: 254 ILKFDQEKNRVSLGLKQLTEDPWI-GLSRRYPQGTRMFGK 292
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 26/185 (14%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 280 SRRYPQGTRMF-GKVTNMTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKIVQ------ 332
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V +++ +E+ +++ K W ++S + G+ D+G FI L
Sbjct: 333 LGDEVEVMILEIDEDRRRISLGMKQCKPNPWEEFSLSHEKGNKVTGQIKSITDFGLFIGL 392
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSIKQL 260
P ++ GLVH+S++SW IQ ++E GDEV V+ ID EK RI+L IKQL
Sbjct: 393 --PG---NIDGLVHLSDLSW--IQTGEKAISEFRKGDEVEAVVLSIDVEKERISLGIKQL 445
Query: 261 EEDPL 265
E DP
Sbjct: 446 EGDPF 450
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ AD A + G + +G ++ G V + G L ++ K P +
Sbjct: 184 EETQGADRDELLASLQEGAVVQGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPTE 242
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
I+ G +S K+++ ++E ++ K W S R G+
Sbjct: 243 VIN------VGDEVSAKILKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRMFGKVTNM 296
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GLVHVSE+ W +++ I+ GDEV V +++ID ++ R
Sbjct: 297 TDYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEDRRR 350
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 351 ISLGMKQCKPNPWEE 365
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + SE S D I+DIR +NEGDE+ +I IDR+ I+LS+K Q EED + +
Sbjct: 483 VEGYLRASEFSRDKIEDIRTRVNEGDELEAAIINIDRKSRSISLSVKARIQEEEDKAIRS 542
Query: 269 L 269
L
Sbjct: 543 L 543
>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
Length = 330
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + +E
Sbjct: 108 WERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTRVNKEE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ NK V G + YGAFI +
Sbjct: 158 -LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKPYGAFIDI- 215
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N D+V+V +I +D E+ RI+LS KQLE +P
Sbjct: 216 -----GGVSGLLHISEISHDHIDTPHSVFNVNDQVKVMIIDLDAERGRISLSTKQLEPEP 270
>gi|358449186|ref|ZP_09159676.1| 30S ribosomal protein S1 [Marinobacter manganoxydans MnI7-9]
gi|357226603|gb|EHJ05078.1| 30S ribosomal protein S1 [Marinobacter manganoxydans MnI7-9]
Length = 564
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK E+ + +G I G GG V + FLP P
Sbjct: 86 REKAKRAEA-WKVLEKSFEAEEVVKGIINGKVKGGFTVDLAGIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + + ++ + ++S + + E +E++A+ + + ++ I
Sbjct: 145 AHLENKELEFKVIKLDQKRNNVVVSRRAVLEAENS-----AEREALLETLTEGMEIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEISVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP ++ ++ P+G
Sbjct: 254 RVSLGLKQLGEDPWVD-IKGRYPEG 277
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVGVMILDIDEERRRISLGIKQCVSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+SS N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 DFSSNFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 410 KKGDEVETVILSVDPERERISLGIKQLESDPFAE 443
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLTEGMEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G ISVKV++ + E ++ K + W R R
Sbjct: 234 IVN------VGDEISVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGSKVTARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCVSNP 353
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQALE 532
Query: 271 KV 272
V
Sbjct: 533 NV 534
>gi|379009524|ref|YP_005267337.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375158048|gb|AFA41114.1| 30S ribosomal subunit protein S1 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 557
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ + T++ I D + + +++ A W E I G I G
Sbjct: 58 GELEVKIGDVIDVTLDAIEDGFGETILSREKAKRYAAWSHLEKAHEESTIVNGVINGKVK 117
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V + FLP + + + S++ L G KVI+ +++ +V
Sbjct: 118 GGFTVELHGIRAFLPGSLVD----IRPIRDSVN-----LEGKNFEFKVIKLDQKRNNVVV 168
Query: 173 S-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E++ + N I DYGAFI L DGL H+T +
Sbjct: 169 SRRAVIESENSAEREHILNNLQEGAQATGIVKNLTDYGAFIDLGGIDGLLHIT------D 222
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
++W ++ +I+ GDE+ VK++K DREK+R++L +KQL +DP +
Sbjct: 223 MAWKRVKHPSEIVGMGDEITVKILKFDREKTRVSLGLKQLSQDPWI 268
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G I++V V+ +E+ +++ K W
Sbjct: 302 GLVHISEMDWTNKNIHPSKVVQ------IGDIVNVLVLDIDEDRRRISLGLKQCQPNPWK 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
K+S D G+ D+G FI L + GLVH+S+VSW+L ++
Sbjct: 356 KFSEIHKKGDCVKGKIKSITDFGIFIGLEGG-----IDGLVHLSDVSWNLSGEEAVKEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GD + V+++D ++ RI+L +KQL EDP + K
Sbjct: 411 KGDLISAMVLQVDSDRERISLGVKQLLEDPFHHYITK 447
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + + G G ++ G + + G L M+ K P +
Sbjct: 175 ESENSAEREHILNNLQEGAQATGIVKNLTDYGAFIDLGGIDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
+ G I+VK+++ + E ++ K W S++ GR
Sbjct: 234 IVG------MGDEITVKILKFDREKTRVSLGLKQLSQDPWINLSTKYPENKNVSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVH+SE+ W ++I ++ GD V V V+ ID ++ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHISEMDW-TNKNIHPSKVVQIGDIVNVLVLDIDEDRRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCQPNP 353
>gi|385331107|ref|YP_005885058.1| ribosomal S1 synthesis/modification protein [Marinobacter adhaerens
HP15]
gi|311694257|gb|ADP97130.1| ribosomal S1 synthesis/modification protein [Marinobacter adhaerens
HP15]
Length = 564
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK E+ + +G I G GG V + FLP P
Sbjct: 86 REKAKRAEA-WKVLEKSFEAEEVVKGIINGKVKGGFTVDLAGIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + + ++ + ++S + + E +E++A+ + + ++ I
Sbjct: 145 AHLENKELEFKVIKLDQKRNNVVVSRRAVLEAENS-----AEREALLETLTEGMEIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEISVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP ++ ++ P+G
Sbjct: 254 RVSLGLKQLGEDPWVD-IKGRYPEG 277
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVDVMILDIDEERRRISLGIKQCVSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+SS N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 DFSSNFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 410 KKGDEVETVILSVDPERERISLGIKQLESDPFAE 443
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLTEGMEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G ISVKV++ + E ++ K + W R R
Sbjct: 234 IVN------VGDEISVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGSKVKARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVDVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCVSNP 353
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQALE 532
Query: 271 KV 272
V
Sbjct: 533 NV 534
>gi|167623971|ref|YP_001674265.1| 30S ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
gi|167353993|gb|ABZ76606.1| ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
Length = 555
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ +V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFAERFNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|372267290|ref|ZP_09503338.1| 30S ribosomal protein S1 [Alteromonas sp. S89]
Length = 559
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + +G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRAEA-WKILDAAHAADEVVKGVISGKVKGGFTVDVANIRAFLPGSLV----DVR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ + + +V S E++A+ +
Sbjct: 140 PVRDTAH-----LEGKELDFKVIKLDAKRNNVVVSRRAVMEAANSEEREALLASLQEGMA 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
++ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K
Sbjct: 195 IKGIVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEIEVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE+SR++L +KQL EDP
Sbjct: 249 DRERSRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +S + +A A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAANSEEREALLASLQEGMAIKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K ++ +Y V+ +
Sbjct: 234 IVN------VGDEIEVKVLKFDRERSRVSLGLKQLGEDPWVSIKQRYPENSRVKAVITNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++N GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +E+P
Sbjct: 342 ISLGIKQCQENP 353
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G + V ++ +EE +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------VGDEVEVMILDIDEERRRISLGIKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++ + D G+ D+G FI L DG + GLVH+S++SW+ + +R
Sbjct: 356 AFARKFAKGDKISGKIKSITDFGIFIGL---DG--SIDGLVHLSDISWNEAGEEAVRK-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID ++ RI+L IKQLE DP
Sbjct: 410 KKGDELETVILGIDSDRERISLGIKQLESDPF 441
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ G++ SE+S D ++D R+ L EG+EV K+ +DR+ I+LSIK ++D
Sbjct: 473 EVEGVLRASEISRDKVEDARNALKEGEEVETKITSVDRKNRVISLSIKAKDQD 525
>gi|157961894|ref|YP_001501928.1| 30S ribosomal protein S1 [Shewanella pealeana ATCC 700345]
gi|157846894|gb|ABV87393.1| ribosomal protein S1 [Shewanella pealeana ATCC 700345]
Length = 555
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ +V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFAERFNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|30249909|ref|NP_841979.1| 30S ribosomal protein S1 [Nitrosomonas europaea ATCC 19718]
gi|30180946|emb|CAD85873.1| Ribosomal protein S1:S1 RNA binding domain [Nitrosomonas europaea
ATCC 19718]
Length = 572
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLL-----VRFF---SLVGFLPFPQM 131
R R +A W E G I G + G GGL +R F SLV P M
Sbjct: 95 RDKAKRLNA-WYELEEAMEKGKIVTGMVNGKVKGGLTATINGIRAFLPGSLVDIRPVKDM 153
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+P + KE + + ++ + ++S + + +++ +++D + V+ I
Sbjct: 154 TP-YENKEMEFKVIKLDRKRNNVVVSRRAV-----LEETQGADRDELLASLQDGAVVQGI 207
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T L +W ++ +++N GDEV KV+K D+EK
Sbjct: 208 VKNITDYGAFVDLGGIDGLLHITDL------AWRRVKHPTEVINVGDEVTAKVLKFDQEK 261
Query: 251 SRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
+R++L +KQL EDP + L + PQG + K
Sbjct: 262 NRVSLGLKQLTEDPWI-GLSRRYPQGTRIFGK 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ AD A + G + +G ++ G V + G L ++ K P +
Sbjct: 184 EETQGADRDELLASLQDGAVVQGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPTE 242
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
I+ G ++ KV++ ++E ++ K W S R G+
Sbjct: 243 VIN------VGDEVTAKVLKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRIFGKVTNM 296
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GLVHVSE+ W +++ I+ GDEV V +++ID ++ R
Sbjct: 297 TDYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEDRRR 350
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ +P E
Sbjct: 351 ISLGMKQCRPNPWEE 365
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLE 267
+ G + SE S D I+DIR +NEGDE+ +I IDR+ I+LS+K Q EED ++
Sbjct: 482 EVEGYLRASEFSRDKIEDIRSRVNEGDEIEAMIINIDRKNRSISLSVKARIQDEEDKAVK 541
Query: 268 TLEKV 272
+L V
Sbjct: 542 SLASV 546
>gi|430761091|ref|YP_007216948.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010715|gb|AGA33467.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
14787]
Length = 557
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + A +E ++ G+I G GG V + FLP +
Sbjct: 85 SREKAKRAKAWDRLEHAMEEEKYVV-GQISGKVKGGYTVELGDIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + + A L G + K+I+ + +V S + V +YS+ N+++ V
Sbjct: 139 ---RPVRDTAY-LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGIV 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W ++ D++N GDEV VKV+K
Sbjct: 195 VKGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSDVVNIGDEVDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE+ R++L +KQL EDP E + + P G
Sbjct: 249 DRERMRVSLGLKQLGEDP-WENIARRYPTG 277
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y I+ G++ G V V G + +M ++ P K++
Sbjct: 271 ARRYPTGTRIF-GRVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPGKAVA------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V ++ +EE +++ K W+ +++ N + G D+G F+ L
Sbjct: 324 IGDEVEVMILDLDEERRRISLGMKQCQANPWDDFAANHNRGEKVRGTIKSITDFGVFVGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 ---DG--GIDGLIHLSDLSWQQPGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLD 437
Query: 262 EDPL 265
DP
Sbjct: 438 RDPF 441
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ +++S D ++D R +LN GD++ K + +D++ I+LSIK
Sbjct: 474 IDGILRAADISRDRVEDARTVLNVGDKIEAKFMGVDKKTRAISLSIK 520
>gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
Length = 556
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLESLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
>gi|163748940|ref|ZP_02156191.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
gi|161331316|gb|EDQ02204.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
Length = 555
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 33/219 (15%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFF 120
TV+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 67 TVHVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GVINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
+ FLP + + + + H L + KVI+ +++ +V S + + +
Sbjct: 126 GIRAFLPGSLVD----VRPVRDTAH-----LENKDLEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 181 KYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+ S+ + +E++ G+ DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ESSAERDALLENLQEGQSIKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+I+N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 231 PSEIVNVGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVS------LGDEVEVLVLDIDEERRRISLGLKQCKSNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIR 230
++ R N D G+ D+G FI L DG + GLVH+S++SW + + D +
Sbjct: 356 DFAERFNKGDKVTGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVADYK 410
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 ----KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I +++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|350561176|ref|ZP_08930015.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781283|gb|EGZ35591.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 557
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + A +E ++ G+I G GG V + FLP +
Sbjct: 85 SREKAKRAKAWDRLEHAMEEETYVV-GQISGKVKGGYTVELGDIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + + A L G + K+I+ + +V S + V +YS+ N+++ V
Sbjct: 139 ---RPVRDTAY-LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGIV 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W ++ D++N GDEV VKV+K
Sbjct: 195 VKGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSDVVNIGDEVDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE+ R++L +KQL EDP E + + P G
Sbjct: 249 DRERMRVSLGLKQLGEDP-WENIARRYPTG 277
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y I+ G++ G V V G + +M ++ P K++
Sbjct: 271 ARRYPTGTRIF-GRVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPGKAVA------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V ++ +EE +++ K W +++ N + G D+G F+ L
Sbjct: 324 IGDEVEVMILDLDEERRRISLGMKQCQANPWEDFAANHNRGEKVRGTIKSITDFGVFVGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 ---DG--GIDGLIHLSDLSWQQPGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLD 437
Query: 262 EDPL 265
DP
Sbjct: 438 RDPF 441
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ +++S D ++D R +L+ GD+V K + +D++ I+LSIK
Sbjct: 474 IDGILRAADISRDRVEDARTVLSVGDQVEAKFMGVDKKTRAISLSIK 520
>gi|323495049|ref|ZP_08100138.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
gi|323310706|gb|EGA63881.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
Length = 556
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 269 LEK 271
L K
Sbjct: 534 LNK 536
>gi|37525567|ref|NP_928911.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784995|emb|CAE13915.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 557
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEDAETVT-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L IKQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGIKQLAEDPF 441
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEIAVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|410726916|ref|ZP_11365147.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Clostridium sp. Maddingley MBC34-26]
gi|410599891|gb|EKQ54430.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Clostridium sp. Maddingley MBC34-26]
Length = 634
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 21/185 (11%)
Query: 84 SRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS 143
S+++ D KA ++ G + +G+++ F G V + G L Q+S +H K
Sbjct: 463 SKNAEDAKAWESFN-LGDVVKGEVKRFTNFGAFVEVNGIDGLLHLSQVSWNHI-----KD 516
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR----- 195
+ E+ K G + VK+I ++E KKL S K+ + W+ + E I +G+
Sbjct: 517 VSEVLK--EGQTVDVKIIGLDKEAKKLSLSMKELIAKPWDNAKEKYPEESIVLGKVVRLN 574
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L P + GLVH+S++S I+ ++L G E++ K++ +D E RI+L
Sbjct: 575 DFGAFVELE-P----GVDGLVHISKISHSRIEHPSEVLKVGQEIKAKILAVDEENKRISL 629
Query: 256 SIKQL 260
SIK +
Sbjct: 630 SIKDI 634
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 173 SEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 227
+E W + N+ D+ G ++GAF+ + DGL HL S+VSW+ I+
Sbjct: 466 AEDAKAWESF----NLGDVVKGEVKRFTNFGAFVEVNGIDGLLHL------SQVSWNHIK 515
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
D+ ++L EG V VK+I +D+E +++LS+K+L P EK
Sbjct: 516 DVSEVLKEGQTVDVKIIGLDKEAKKLSLSMKELIAKPWDNAKEK 559
>gi|384081916|ref|ZP_09993091.1| 30S ribosomal protein S1 [gamma proteobacterium HIMB30]
Length = 561
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A +A++E+ + G I G GG V + FLP +
Sbjct: 85 SREKAKRAEAWIDLEKAHEENAVVM-GIINGKVKGGFTVDLAGIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR- 195
+ + ++A L G + KVI+ ++ +V S + + + S +E++ G+
Sbjct: 139 ---RPVRDVAH-LEGKELEFKVIKLDQRRNNVVVSRRAVLEQENSEEREALLENLVEGQA 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T ++SW I+ +++ GDEV VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMSWKRIKHPSEVVAVGDEVDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLE 267
DRE++R++L +KQL EDP +E
Sbjct: 249 DRERNRVSLGLKQLGEDPWIE 269
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +G ++ G V + G L MS K P + + G + VK
Sbjct: 192 GQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMSWKR-IKHPSEVVA------VGDEVDVK 244
Query: 160 VIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDGLY 210
V++ + E ++ K + N+Y ++RVN I DYG F +
Sbjct: 245 VLKFDRERNRVSLGLKQLGEDPWIEIKNRYPVNTRVNAR-ITNLTDYGCFAEIE-----E 298
Query: 211 HLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ I++ GDEV V V+ ID E+ RI+L IKQ + +P
Sbjct: 299 GVEGLVHVSEMDW-TNKNVHPSKIVSLGDEVEVMVLDIDEERRRISLGIKQCKVNP 353
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GL+H+S++SW ++ R+ +G+++ ++ +D E+ RI
Sbjct: 376 DFGVFIGL---DG--GIDGLIHLSDLSWSEPGEVAVRN-FKKGEDLEAVILAVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQLEEDP+
Sbjct: 430 SLGVKQLEEDPM 441
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++ SE+S D ++D R++LN GDEV K+ +DR+ +I+LS++
Sbjct: 477 VLKASELSRDRVEDARNVLNVGDEVEAKIANVDRKTRQISLSVR 520
>gi|197284609|ref|YP_002150481.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
gi|227356792|ref|ZP_03841177.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
gi|425067501|ref|ZP_18470617.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW6]
gi|425073062|ref|ZP_18476168.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW4]
gi|194682096|emb|CAR41670.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
gi|227163082|gb|EEI48017.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
gi|404595947|gb|EKA96478.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW4]
gi|404601332|gb|EKB01745.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW6]
Length = 557
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R A +AY+E+ + G I G GG V + FLP P
Sbjct: 86 REKAKRHEAWLMLEKAYEENETVV-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + + ++ + ++S + + +E +E+D + + V+ I
Sbjct: 145 THLENKELEFKVIKLDQKRNNVVVSRRAVIESENS-----AERDQLLENLQEGMEVKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERT 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP + + K P+G
Sbjct: 254 RVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLSEDPF 441
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|170726659|ref|YP_001760685.1| 30S ribosomal protein S1 [Shewanella woodyi ATCC 51908]
gi|169812006|gb|ACA86590.1| ribosomal protein S1 [Shewanella woodyi ATCC 51908]
Length = 555
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 33/219 (15%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFF 120
+V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 67 SVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GVINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS------- 173
+ FLP + + + + H L + KVI+ +++ +V S
Sbjct: 126 GIRAFLPGSLVD----VRPVRDTAH-----LENKDLEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 174 ----EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
E+DA+ +V+ I DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+I+N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 231 PSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R D G+ D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFADRFAKGDKVTGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEINAVVLSVDPERERISLGVKQTEDDPF 441
>gi|406875885|gb|EKD25587.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 468
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 14/163 (8%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSHSCK---EPQKSIHEIAKGLTGSIISVKVIQANEEM 167
N GGLLV + GF+P Q++P H + Q+ I E L G + V++I +E+
Sbjct: 122 NLGGLLVDMHGIKGFVPLSQLAPIHYPRVEDGDQEIIFEKLLDLIGKELKVRIINIDEDE 181
Query: 168 KKLVFSEKDAVWNKYSSRVNV-EDIFVGRDYGAFIHLRFPDGLY-----HLTGLVHVSEV 221
K++V SE++A+ R N+ +D+ VG+ Y + GL+ + GLVH+SE+
Sbjct: 182 KRIVLSEREAL---KEERENILKDLEVGKIYDGVVSGLSSYGLFVTIGWTVEGLVHISEI 238
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++ + +I + GD++ VKVI + E +I+LS K+L++DP
Sbjct: 239 TYGHVNNIEKLGKIGDKISVKVIGL--ENGKISLSSKKLKDDP 279
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQKSIHEIAK-GLTGSI 155
E G IY+G + G + GL V +++ G + +++ H ++ I K G G
Sbjct: 204 EVGKIYDGVVSGLSSYGLFVTIGWTVEGLVHISEITYGH--------VNNIEKLGKIGDK 255
Query: 156 ISVKVI-----QANEEMKKLVFSEKDAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGL 209
ISVKVI + + KKL + A+ +Y +E ++ YG F+ + F D
Sbjct: 256 ISVKVIGLENGKISLSSKKLKDDPRTALPKEYKIGDYIEGEVIRFVPYGVFVRV-FQD-- 312
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+SE+S IQ+ +++ G ++ K+I +D + +I LS+K +++D
Sbjct: 313 --INGLVHLSELSQKSIQNPNEVVKLGQIIKTKIILLDPKNRKIWLSMKGVDDD 364
>gi|410085396|ref|ZP_11282115.1| SSU ribosomal protein S1p [Morganella morganii SC01]
gi|421492373|ref|ZP_15939734.1| RPSA [Morganella morganii subsp. morganii KT]
gi|455738686|ref|YP_007504952.1| SSU ribosomal protein S1p [Morganella morganii subsp. morganii KT]
gi|400193529|gb|EJO26664.1| RPSA [Morganella morganii subsp. morganii KT]
gi|409768105|gb|EKN52169.1| SSU ribosomal protein S1p [Morganella morganii SC01]
gi|455420249|gb|AGG30579.1| SSU ribosomal protein S1p [Morganella morganii subsp. morganii KT]
Length = 557
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
KG I+ V+Q + E +++ K +N Y++ I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYTAVTKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I LS++
Sbjct: 468 VELM--DGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKYTGVDRKNRVINLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|372269727|ref|ZP_09505775.1| 30S ribosomal protein S1 [Marinobacterium stanieri S30]
Length = 558
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 40/204 (19%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R A W+ E+G + G I G GGL + L FLP P
Sbjct: 85 SRERAKRIEA-WEVLEQAYENGEVVTGHIIGRVRGGLTINVQGLNAFLPGSLVDIRPLRD 143
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN----- 187
SH L G + ++++ + LV S + + YS
Sbjct: 144 TSH---------------LEGQELEFRIVKLDARSNNLVVSRRAVLEEAYSKEREKLLEK 188
Query: 188 VEDIFVGR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR 240
+E+ V + DYGAFI L DGL H+T +++W ++ ++LN GDE+
Sbjct: 189 MEEGLVVKGVVKNLTDYGAFIDLGGIDGLLHIT------DIAWKRVKHPSEVLNVGDEID 242
Query: 241 VKVIKIDREKSRITLSIKQLEEDP 264
VKV+K D E+ R++L +KQL+EDP
Sbjct: 243 VKVLKYDAERKRVSLGLKQLQEDP 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +++ +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMILDIDQQRRRISLGMKQCQTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDIL 233
+++ D GR D+G F+ L DG + GLVH+S++SWDL + ++D
Sbjct: 356 AFATTHAKGDTVSGRVRSITDFGVFVGL---DG--GIDGLVHLSDLSWDLPGEEAMKD-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
N+GDEV V+ +D E+ RI L IKQL DP
Sbjct: 410 NKGDEVEALVLSVDPERERIALGIKQLNSDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +G ++ G + + G L ++ K P + ++ G I
Sbjct: 190 EEGLVVKGVVKNLTDYGAFIDLGGIDGLLHITDIAWKR-VKHPSEVLN------VGDEID 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E K++ K + W K V + DYG F +
Sbjct: 243 VKVLKYDAERKRVSLGLKQLQEDPWTKLIGEYTVGTRVKAKVTNLTDYGCFAEIS----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++ GDEV V ++ ID+++ RI+L +KQ + +P
Sbjct: 298 TGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMILDIDQQRRRISLGMKQCQTNP 353
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
G++ V+E+S D +D+ L GD + ++ +DR I LS++Q+E + + ++ V
Sbjct: 476 GVLKVAELSQDHTEDLTSELKVGDSLEASILSVDRRNRTINLSVRQMEREQTKQAMQSVR 535
Query: 274 PQ 275
Q
Sbjct: 536 EQ 537
>gi|343503065|ref|ZP_08740900.1| 30S ribosomal protein S1 [Vibrio tubiashii ATCC 19109]
gi|418480499|ref|ZP_13049557.1| 30S ribosomal protein S1 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812735|gb|EGU47727.1| 30S ribosomal protein S1 [Vibrio tubiashii ATCC 19109]
gi|384571891|gb|EIF02419.1| 30S ribosomal protein S1 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 556
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 269 LEK 271
L K
Sbjct: 534 LNK 536
>gi|260654143|ref|ZP_05859633.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
gi|260631128|gb|EEX49322.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
Length = 500
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 26/164 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V SL GF+P ++ P + E V +++ ++ ++LV
Sbjct: 123 GGLIVDCCSLEGFIPISHLAAEGRGVNPGRFEEEE--------FEVCLLEKDKRKRRLVL 174
Query: 173 SEK-------DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + +A ++ V V D+ G +GAF+++ + GLVH+SE
Sbjct: 175 SRRVLLDKDLNARREEFYQNVKVGDVVDGTVSSLTSFGAFVNV------GPIDGLVHLSE 228
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+SW I+D+L +GDEV+VKVI IDRE ++I+LS++Q++ DP
Sbjct: 229 ISWQRSAKIKDLLKKGDEVKVKVIGIDRENNKISLSMRQVQGDP 272
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G + G V + G + ++S S K I ++ K G + VK
Sbjct: 198 GDVVDGTVSSLTSFGAFVNVGPIDGLVHLSEISWQRSAK-----IKDLLK--KGDEVKVK 250
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSR-----VNVEDIFVGRDYGAFIHLRFPDGLYH 211
VI + E K+ S + W+ + R + D+GAF+ +
Sbjct: 251 VIGIDRENNKISLSMRQVQGDPWDTVTERWTKGQTTTGVVTNVTDFGAFVEVE-----PG 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+ ++SW I+ RD++ +G E+ V V+ ++ ++ R++L KQL DP
Sbjct: 306 IEGLVHIGDLSWARIKHPRDVIRKGQEIEVVVLDVEADRRRMSLGYKQL-NDP 357
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 161 IQANEEMKKLVFSEKDAVWNKYSSR-VNVEDIFVG----RDYGAFIHLRFPDGLYHLTGL 215
++A+ L + + + WN +R +D+ V D+GAF+ L + GL
Sbjct: 340 VEADRRRMSLGYKQLNDPWNGIENRYAKGQDVQVKVVRLADFGAFVELE-----EGVEGL 394
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+H+S++S + +D+L EG EV ++++++ + RI LS++ LE
Sbjct: 395 IHISQLSSKRVDKPKDVLTEGQEVTARILEVNPTERRIRLSLRALE 440
>gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
Length = 591
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ ++ + D + + +++ A W G + +G I G
Sbjct: 89 GELEVQVGDFVHVAIDALEDGYGETRLSREKAKRIAAWNDLEKALNEGSLVKGLISGRVK 148
Query: 113 GGLLVRFFSLVGFLP--FPQMSP-----SHSCKEPQKSIHEIAKGLTGSIISVKVI---Q 162
GGL V S+ FLP M P + KE + + ++ + ++S + +
Sbjct: 149 GGLTVMTNSIRAFLPGSLVDMRPVKDTSPYEGKEFEFKVIKLDRKRNNVVVSRRAVLEET 208
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE +KL+ + K+ K V++I DYGAF+ L DGL H+T L +
Sbjct: 209 MGEEREKLLANLKEGTVIKGI----VKNI---TDYGAFVDLGGIDGLLHITDL------A 255
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++LN GDE+ KV+K D+EK+R++L +KQL EDP + + + PQG + K
Sbjct: 256 WRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSLGLKQLGEDPWV-GISRRYPQGTRLFGK 314
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 345 KNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIKS 404
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L DG + GLVH+S++SW D ++ +GDEV V+ ID E+ R
Sbjct: 405 ITDFGVFIGL---DG--GIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERER 459
Query: 253 ITLSIKQLEEDPL 265
I+L +KQLE DP
Sbjct: 460 ISLGVKQLEGDPF 472
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 320 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 373
Query: 254 TLSIKQLEEDP 264
+L +KQ +P
Sbjct: 374 SLGMKQCMSNP 384
>gi|226330706|ref|ZP_03806224.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
gi|225201501|gb|EEG83855.1| ribosomal protein S1 [Proteus penneri ATCC 35198]
Length = 557
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R A +AY+E+ + G I G GG V + FLP P
Sbjct: 86 REKAKRHEAWLMLEKAYEENETVV-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + + ++ + ++S + + +E +E+D + + V+ I
Sbjct: 145 THLENKELEFKVIKLDQKRNNVVVSRRAVIESENS-----AERDQLLENLQEGMEVKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERT 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP + + K P+G
Sbjct: 254 RVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLSEDPF 441
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|127512882|ref|YP_001094079.1| 30S ribosomal protein S1 [Shewanella loihica PV-4]
gi|126638177|gb|ABO23820.1| SSU ribosomal protein S1P [Shewanella loihica PV-4]
Length = 555
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GVINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R D G+ D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFAERYAKGDKVTGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVSDYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEISAVVLSVDPERERISLGVKQTEDDPF 441
>gi|359781415|ref|ZP_09284639.1| 30S ribosomal protein S1 [Pseudomonas psychrotolerans L19]
gi|359370479|gb|EHK71046.1| 30S ribosomal protein S1 [Pseudomonas psychrotolerans L19]
Length = 559
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ + N ++ + D + + +++ + W A + + +G I G
Sbjct: 58 GELTINVGDEVHVALDAVEDGFGETKVSREKAKRAESWLVLEAAFSADEVVKGVINGKVK 117
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V + FLP + + + + H L G + KVI+ +++ +V
Sbjct: 118 GGFTVDVSGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVIKLDQKRNNVVV 168
Query: 173 S-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E++A+ V+ I DYGAF+ L DGL H+T +
Sbjct: 169 SRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHIT------D 222
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + ++ P+G
Sbjct: 223 MAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AIKARYPEG 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W ++S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCRANPWEEFSGQFNKGDRISGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGLE-----GGIDGLVHLSDISWNETGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L IKQ +P E
Sbjct: 342 ISLGIKQCRANPWEE 356
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ G++ SE+S D ++D R++L EGDEV K+I IDR+ I+LS+K + D E +
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVKSKDVDDEKEAM 531
>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 403
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 208 WDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQEGEN--------HEA-- 257
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A + + V + G + YG FI L
Sbjct: 258 -LVGKTLGVAFLEVNPETRKLVLSEKKAATAARFAELEVGQLVEGHVAAVKPYGLFIDL- 315
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R++ ++GD V+ + ++D + RI L+ LE P
Sbjct: 316 -----GGISGLLHQSMITGGSLRSLREVFDQGDTVKALITELDPGRGRIALNTAMLEGQP 370
>gi|319760512|ref|YP_004124450.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
gi|318039226|gb|ADV33776.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
Length = 575
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DWK-AARAYKESGF 101
P+ +F + ++ +V+ ILD D SR A W +AY+++
Sbjct: 48 IPIDQFYNSKGELEIAIGDSVDVILDAIEDGFGETVLSREKAKRLESWLFLEQAYRDTTT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ EG I G GG V + FLP + P K + L G I KVI
Sbjct: 108 V-EGIINGKVKGGFTVELNGIRAFLPGSLVDV-----RPIKDTLD----LEGQICEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ + + +V S E+D + NK V ++ + DYGAFI L DGL
Sbjct: 158 KLDYKRNNVVVSRRAAIESENSAERDQLLNKLHEGVVLKGLVKNLTDYGAFIDLGGIDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H++++SW ++ D++N GD + VKV+K D+E+ R++L +KQL++DP
Sbjct: 218 ------LHITDISWKRVKHPSDVINIGDSITVKVLKFDKERIRVSLGLKQLQDDP 266
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 96 YKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
YKE + GK+ G + V G + +M ++ +P K + G
Sbjct: 274 YKEGDKLV-GKVTNLTDYGCFIEIKGGVEGLVHISEMDWTNKNIQPSKVV------AIGD 326
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+I V V+ +++ +++ K W K+S D G+ D+G FI L
Sbjct: 327 LIEVIVLDIDKDRRRISLGLKQCKINPWQKFSEMYTRGDKVSGKIKSVTDFGIFIGLEGG 386
Query: 207 DGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SWD++ ++ + +GDE+ V+++D E+ RI+LSIKQL EDPL
Sbjct: 387 -----IDGLVHLSDISWDMVNEESINKYKKGDEIEAVVLQVDIERERISLSIKQLTEDPL 441
>gi|400405107|ref|YP_006587966.1| 30S ribosomal protein S1 [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363470|gb|AFP84538.1| ribosomal protein S1 [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 558
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A ++Y+ES + G I G GG + + FLP + +
Sbjct: 85 SREKAKRYEAWLILEKSYEESATVI-GIINGKVKGGFTIELKGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMK 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+ GDE+ VKV+K
Sbjct: 195 VQGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVTVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWI-AIAKRYPEG 277
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDI 232
W ++++ + D G+ D+G FI L DG + GLVH+S++SW L+ ++
Sbjct: 354 WQQFANTHHKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWHLVGEEAVRA 408
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D ++ RI+L +KQ+ EDP
Sbjct: 409 YKKGDEIEAVVLQVDADRERISLGVKQMAEDPF 441
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMKVQGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IV------TVGDEITVKVLKFDRERTRVSLGLKQLGEDPWIAIAKRYPEGAHLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N D V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVSDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|348029200|ref|YP_004871886.1| 30S ribosomal protein S1 [Glaciecola nitratireducens FR1064]
gi|347946543|gb|AEP29893.1| 30S ribosomal protein S1 [Glaciecola nitratireducens FR1064]
Length = 556
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + RAY+E I +G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRHEAWVELERAYEEKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
++++H L G + KVI+ + + +V S E+D + +
Sbjct: 140 PVRETVH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLSNLEEGDE 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
D+EKSR++L +KQ+ DP E + P+G
Sbjct: 249 DKEKSRVSLGMKQMGNDPWQEIANR-YPEG 277
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 28/155 (18%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G ++ V V++ +EE +++ K D W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVVEVMVLEIDEERRRISLGLKQCIDNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIR 230
++ D G+ D+G FI L DG + GLVH+S++SW D ++D +
Sbjct: 356 TFAKSHEKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWQKTGEDAVRDYK 410
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ++EDP
Sbjct: 411 ----KGDEISAVVLQVDPERERISLGVKQIDEDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 24/204 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDQLLSNLEEGDEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
++ G I+VKV++ ++E MK++ + N+Y +
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEKVIPQG 276
I+L +KQ ++P ET K +G
Sbjct: 342 ISLGLKQCIDNP-WETFAKSHEKG 364
>gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
Length = 569
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ ++ + D + + +++ A W G + +G I G
Sbjct: 67 GELEVQVGDFVHVAIDALEDGYGETRLSREKAKRIAAWNDLEKALNEGSLVKGLISGRVK 126
Query: 113 GGLLVRFFSLVGFLP--FPQMSP-----SHSCKEPQKSIHEIAKGLTGSIISVKVI---Q 162
GGL V S+ FLP M P + KE + + ++ + ++S + +
Sbjct: 127 GGLTVMTNSIRAFLPGSLVDMRPVKDTSPYEGKEFEFKVIKLDRKRNNVVVSRRAVLEET 186
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE +KL+ + K+ K V++I DYGAF+ L DGL H+T L +
Sbjct: 187 MGEEREKLLANLKEGTVIKGI----VKNI---TDYGAFVDLGGIDGLLHITDL------A 233
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++LN GDE+ KV+K D+EK+R++L +KQL EDP + + + PQG + K
Sbjct: 234 WRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSLGLKQLGEDPWV-GISRRYPQGTRLFGK 292
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 323 KNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIKS 382
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L DG + GLVH+S++SW D ++ +GDEV V+ ID E+ R
Sbjct: 383 ITDFGVFIGL---DG--GIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERER 437
Query: 253 ITLSIKQLEEDPL 265
I+L +KQLE DP
Sbjct: 438 ISLGVKQLEGDPF 450
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G ++ G V + G L ++ + P + ++ G I K
Sbjct: 201 GTVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVRHPSEVLN------VGDEIDAK 253
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K + W S R G+ DYGAF+ +
Sbjct: 254 VLKFDQEKNRVSLGLKQLGEDPWVGISRRYPQGTRLFGKVTNITDYGAFVEVE-----QG 308
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI+L +KQ +P
Sbjct: 309 IEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNP 362
>gi|42837|emb|CAA23630.1| unnamed protein product [Escherichia coli]
Length = 556
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV-EDIFVG--- 194
+ ++H L G + KVI+ +++ +V S + + ++ S+ + E++ G
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSADDQLLENLQEGMEV 194
Query: 195 -------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 195 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 248
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 249 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 276
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 353 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 407
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 408 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 440
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SAD + +E G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSADDQLLENLQE-GMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 232
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 233 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 286
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 287 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 340
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 341 ISLGLKQCKANP 352
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 353 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 409
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 410 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 466
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 467 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 521
Query: 261 EE 262
+E
Sbjct: 522 DE 523
>gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
Length = 556
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D I+D IL+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL-----VEGVEGYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE + +L K
Sbjct: 520 KAKDEAEEQEAMASLNK 536
>gi|24373949|ref|NP_717992.1| ribosomal protein S1 RpsA [Shewanella oneidensis MR-1]
gi|24348384|gb|AAN55436.1| ribosomal protein S1 RpsA [Shewanella oneidensis MR-1]
Length = 555
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|113970262|ref|YP_734055.1| 30S ribosomal protein S1 [Shewanella sp. MR-4]
gi|114047549|ref|YP_738099.1| 30S ribosomal protein S1 [Shewanella sp. MR-7]
gi|117920422|ref|YP_869614.1| 30S ribosomal protein S1 [Shewanella sp. ANA-3]
gi|113884946|gb|ABI38998.1| SSU ribosomal protein S1P [Shewanella sp. MR-4]
gi|113888991|gb|ABI43042.1| SSU ribosomal protein S1P [Shewanella sp. MR-7]
gi|117612754|gb|ABK48208.1| SSU ribosomal protein S1P [Shewanella sp. ANA-3]
Length = 555
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|410623139|ref|ZP_11333958.1| small subunit ribosomal protein S1 [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410157340|dbj|GAC29332.1| small subunit ribosomal protein S1 [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 557
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + RAY+E I +G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRHEAWVELERAYEEKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
++++H L G + KVI+ + + +V S E+D + +
Sbjct: 140 PVRETVH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLSNLEEGDE 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
D+EKSR++L +KQ+ DP E + P+G
Sbjct: 249 DKEKSRVSLGMKQMGNDPWQEIANR-YPEG 277
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 28/155 (18%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G ++ V V++ +EE +++ K D W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVVEVMVLEIDEERRRISLGLKQCIDNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIR 230
++ D G+ D+G FI L DG + GLVH+S++SW D ++D +
Sbjct: 356 TFAKSHEKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWQKTGEDAVRDYK 410
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ+EEDP
Sbjct: 411 ----KGDEISAVVLQVDPERERISLGVKQIEEDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 24/204 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDQLLSNLEEGDEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
++ G I+VKV++ ++E MK++ + N+Y +
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGARLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEKVIPQG 276
I+L +KQ ++P ET K +G
Sbjct: 342 ISLGLKQCIDNP-WETFAKSHEKG 364
>gi|91715111|gb|ABE55037.1| SSU ribosomal protein S1P [Shewanella denitrificans OS217]
Length = 577
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 90 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 148
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 149 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 203
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 204 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 257
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 258 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 291
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 324 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 377
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 378 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 432
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 433 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 463
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 197 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 256 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLSGRVTNL 309
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 310 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 363
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 364 ISLGLKQCKVNP 375
>gi|162210774|ref|YP_562760.2| 30S ribosomal protein S1 [Shewanella denitrificans OS217]
Length = 555
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
>gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli]
Length = 556
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV-EDIFVG--- 194
+ ++H L G + KVI+ +++ +V S + + ++ S+ + E++ G
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSADDQLLENLQEGMEV 194
Query: 195 -------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 195 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 248
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 249 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 276
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 353 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 407
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 408 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 440
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SAD + +E G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSADDQLLENLQE-GMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 232
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 233 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 286
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 287 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 340
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 341 ISLGLKQCKANP 352
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 353 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 409
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 410 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGVIVTGKVTAVDAKGAT 466
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 467 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 521
Query: 261 EE 262
+E
Sbjct: 522 DE 523
>gi|70731658|ref|YP_261400.1| 30S ribosomal protein S1 [Pseudomonas protegens Pf-5]
gi|389681236|ref|ZP_10172581.1| ribosomal protein S1 [Pseudomonas chlororaphis O6]
gi|399010119|ref|ZP_10712496.1| ribosomal protein S1 [Pseudomonas sp. GM17]
gi|425900776|ref|ZP_18877367.1| ribosomal protein S1 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|68345957|gb|AAY93563.1| ribosomal protein S1 [Pseudomonas protegens Pf-5]
gi|388554772|gb|EIM18020.1| ribosomal protein S1 [Pseudomonas chlororaphis O6]
gi|397883807|gb|EJL00294.1| ribosomal protein S1 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398107673|gb|EJL97667.1| ribosomal protein S1 [Pseudomonas sp. GM17]
Length = 564
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A +++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELSINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D I+D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRIEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|118594697|ref|ZP_01552044.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
gi|118440475|gb|EAV47102.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
Length = 503
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSC-----KEPQK 142
W E G I G + GGL V ++ FLP + P KE +
Sbjct: 105 WIDLEEAMEEGRIVSGFVSSRVKGGLRVTVNGIMAFLPGSLVDIRPVKDTAPFENKECEL 164
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFI 201
+ +I K ++S K + M++ +++++V NV+ I DYGAF+
Sbjct: 165 KVIKIDKKRNNVVVSRKAV-----MEEQSGTDRESVLESIVEGANVKGIIKNITDYGAFV 219
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L DGL H+T L +W I+ +ILN GDE+ +V+K D+EK+R++L +KQL+
Sbjct: 220 DLGGIDGLLHITDL------AWKRIKHPSEILNVGDEIEARVLKFDQEKNRVSLGLKQLD 273
Query: 262 EDP 264
EDP
Sbjct: 274 EDP 276
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G + + + G + +M ++ P K++ G + V +++
Sbjct: 292 GKVSNLTDYGAFIEIETGIEGLVHVSEMDWTNKNIHPTKAVQ------LGDEVEVMILEI 345
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+E+ ++L K W ++S V++ G+ D+G FI L P + GL
Sbjct: 346 DEDRRRLSLGMKQCQANPWEDFASNHKVDEKITGQIKSITDFGIFIGL--PG---EIDGL 400
Query: 216 VHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+H+S++SW D ++ + DE+ +I ID EK RI+L IKQL E+P E EK
Sbjct: 401 IHLSDISWTDSGEEAVKKYKKADELEAIIISIDVEKERISLGIKQLAENPNPEIAEK 457
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +G I+ G V + G L ++ K P + ++ G I +
Sbjct: 202 GANVKGIIKNITDYGAFVDLGGIDGLLHITDLAWKR-IKHPSEILN------VGDEIEAR 254
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K + W R V+ G+ DYGAFI +
Sbjct: 255 VLKFDQEKNRVSLGLKQLDEDPWVGLGRRYPVKTKLFGKVSNLTDYGAFIEIE-----TG 309
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I + GDEV V +++ID ++ R++L +KQ + +P
Sbjct: 310 IEGLVHVSEMDW-TNKNIHPTKAVQLGDEVEVMILEIDEDRRRLSLGMKQCQANP 363
>gi|126174291|ref|YP_001050440.1| 30S ribosomal protein S1 [Shewanella baltica OS155]
gi|153000799|ref|YP_001366480.1| 30S ribosomal protein S1 [Shewanella baltica OS185]
gi|160875508|ref|YP_001554824.1| 30S ribosomal protein S1 [Shewanella baltica OS195]
gi|217973242|ref|YP_002357993.1| 30S ribosomal protein S1 [Shewanella baltica OS223]
gi|373949584|ref|ZP_09609545.1| ribosomal protein S1 [Shewanella baltica OS183]
gi|378708706|ref|YP_005273600.1| 30S ribosomal protein S1 [Shewanella baltica OS678]
gi|386324581|ref|YP_006020698.1| 30S ribosomal protein S1 [Shewanella baltica BA175]
gi|386341020|ref|YP_006037386.1| 30S ribosomal protein S1 [Shewanella baltica OS117]
gi|418025303|ref|ZP_12664282.1| ribosomal protein S1 [Shewanella baltica OS625]
gi|125997496|gb|ABN61571.1| SSU ribosomal protein S1P [Shewanella baltica OS155]
gi|151365417|gb|ABS08417.1| ribosomal protein S1 [Shewanella baltica OS185]
gi|160861030|gb|ABX49564.1| ribosomal protein S1 [Shewanella baltica OS195]
gi|217498377|gb|ACK46570.1| ribosomal protein S1 [Shewanella baltica OS223]
gi|315267695|gb|ADT94548.1| ribosomal protein S1 [Shewanella baltica OS678]
gi|333818726|gb|AEG11392.1| ribosomal protein S1 [Shewanella baltica BA175]
gi|334863421|gb|AEH13892.1| ribosomal protein S1 [Shewanella baltica OS117]
gi|353535287|gb|EHC04850.1| ribosomal protein S1 [Shewanella baltica OS625]
gi|373886184|gb|EHQ15076.1| ribosomal protein S1 [Shewanella baltica OS183]
Length = 555
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + V+++S + I+D + N GD + K + +DR+ I+LSIK + EE ++ T
Sbjct: 474 VEGYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMAT 533
Query: 269 LEK----VIPQGLEPYLKSFYK 286
L K VI + K+ K
Sbjct: 534 LNKQDDAVISNAMAEAFKAARK 555
>gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
Length = 563
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 42/239 (17%)
Query: 49 LCPVGKFSTNAAKITPTTVNPI---LDDSSDANNRQSQSRSSADWKAARAYKESGFIYE- 104
+ P+ +F + ++ + I LD D SR A K ARA+ YE
Sbjct: 47 IIPLEEFVDDDGQVEVNVGDDIEVALDAVEDGFGETRLSREKA--KRARAWTHLEKAYEA 104
Query: 105 -----GKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
G+I G GG V + FLP + P L G +
Sbjct: 105 SESVTGQISGKVKGGFTVDLGHIRAFLPGSLVDIRPVRDTTY-----------LEGKDLE 153
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRF 205
KVI+ + +V S + V +YS+ +E + G+ DYGAF+ L
Sbjct: 154 FKVIKLDPRRNNVVVSRRAVVEEEYSAEREALLEKLQEGQVLKGIVKNLTDYGAFVDLGG 213
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DGL H+T +++W ++ +++N GDEV VKV+K DRE++R++L +KQL EDP
Sbjct: 214 IDGLLHIT------DMAWRRVKHPSEVVNVGDEVDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ES ++ G++ G V V G + +M ++ P K +
Sbjct: 271 ARRYPESSRVF-GRVTNITDYGSFVEIEEGVEGLVHVSEMDWTNKNVNPAKVV------T 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W++++++ N D G+ D+G F+ L
Sbjct: 324 IGEEVEVMVLDIDEERRRVSLGMKQCQANPWDEFAAKNNKGDHVCGQIKSITDFGIFVGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVH+S++SW++ ++ +G+EV V+ +D E+ RI+L IKQLE+
Sbjct: 384 -----AGGIDGLVHLSDLSWNITGEEAVRRYKKGEEVETVVLSVDPERERISLGIKQLEQ 438
Query: 263 DPL 265
DPL
Sbjct: 439 DPL 441
>gi|320539238|ref|ZP_08038908.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
gi|320030630|gb|EFW12639.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
Length = 558
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVV-GVINGKVKGGFTVELSGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDEV +KV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTIKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +RD
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRD 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ G + VSE S D I+D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 474 VEGYLRVSEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G +++KV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEVTIKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
Length = 441
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 31/220 (14%)
Query: 71 LDDSSDANNRQSQSRSSAD--WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF 128
+D + R S+ R+ W E+G + E ++ GGL+V L FLP
Sbjct: 114 VDTKGEGGLRISKRRADEQLAWAEVERKFEAGEVIEAEVTEAVKGGLVVDL-GLRAFLPA 172
Query: 129 PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNK 181
Q+ + + +++K G I VK+I+ + +++ S E+ A +
Sbjct: 173 SQVDRGY--------VADLSK-FVGQKIRVKIIELDPYKGRVILSRKQVLEAERTAARER 223
Query: 182 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 236
+ S V D+ G D+GAFI L DGL +H+SE+S+ I+ +++EG
Sbjct: 224 FWSTVQEGDVLEGTVKSITDFGAFIDLGGVDGL------LHISEMSYGRIKHPSQVVSEG 277
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+ ++VKV+++DREK +++L +KQ+ DP +++E+ P+G
Sbjct: 278 ERIKVKVLRLDREKGKVSLGLKQVLPDP-WDSVEEKYPEG 316
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + EG ++ G + + G L +MS K P + + E G I
Sbjct: 229 QEGDVLEGTVKSITDFGAFIDLGGVDGLLHISEMSYGR-IKHPSQVVSE------GERIK 281
Query: 158 VKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDG 208
VKV++ + E K+ K D+V KY VE V R +GAF+ L
Sbjct: 282 VKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEGT-VARLTTFGAFVELE---- 336
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ GL+H+S+++ I + ++++ GD V+VKVI +D + RI+LS++
Sbjct: 337 -PGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRISLSLR 385
>gi|336311340|ref|ZP_08566304.1| SSU ribosomal protein S1p [Shewanella sp. HN-41]
gi|335865143|gb|EGM70193.1| SSU ribosomal protein S1p [Shewanella sp. HN-41]
Length = 555
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + V+++S + I+D + N GD + K + +DR+ I+LSIK + EE ++ T
Sbjct: 474 VEGYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMAT 533
Query: 269 LEK----VIPQGLEPYLKSFYK 286
L K VI + K+ K
Sbjct: 534 LNKQEDAVISNAMAEAFKAARK 555
>gi|421497056|ref|ZP_15944247.1| 30S ribosomal protein S1 [Aeromonas media WS]
gi|407183949|gb|EKE57815.1| 30S ribosomal protein S1 [Aeromonas media WS]
Length = 556
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 ALGELEINVGDTVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|120598785|ref|YP_963359.1| 30S ribosomal protein S1 [Shewanella sp. W3-18-1]
gi|146293138|ref|YP_001183562.1| 30S ribosomal protein S1 [Shewanella putrefaciens CN-32]
gi|386313725|ref|YP_006009890.1| 30S ribosomal protein S1 [Shewanella putrefaciens 200]
gi|120558878|gb|ABM24805.1| SSU ribosomal protein S1P [Shewanella sp. W3-18-1]
gi|145564828|gb|ABP75763.1| SSU ribosomal protein S1P [Shewanella putrefaciens CN-32]
gi|319426350|gb|ADV54424.1| ribosomal protein S1 [Shewanella putrefaciens 200]
Length = 555
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + V+++S + I+D + N GD + K + +DR+ I+LSIK + EE ++ T
Sbjct: 474 VEGYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMAT 533
Query: 269 LEK----VIPQGLEPYLKSFYK 286
L K VI + K+ K
Sbjct: 534 LNKQEDAVISNAMAEAFKAARK 555
>gi|423201882|ref|ZP_17188461.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
gi|404615829|gb|EKB12788.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
Length = 556
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDTVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|77460293|ref|YP_349800.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
gi|77384296|gb|ABA75809.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
Length = 561
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWV-AI 272
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 273 KARYPEG 279
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 269 WVAIKARYPEGTRVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 325
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 326 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIF 382
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 383 IGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 437
Query: 260 LEEDPLLE 267
LE DP E
Sbjct: 438 LESDPFSE 445
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y +RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 272
+ SE+S D ++D R+ L EG EV K+I +DR+ +I+LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNALKEGQEVEAKIISVDRKSRQISLSIKSKDDAEEKEAIQSL-KA 538
Query: 273 IPQG 276
P+G
Sbjct: 539 APEG 542
>gi|300722536|ref|YP_003711826.1| 30S ribosomal protein S1 [Xenorhabdus nematophila ATCC 19061]
gi|297629043|emb|CBJ89628.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
19061]
Length = 557
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 250 RERTRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L IKQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGIKQLAEDPF 441
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA + L DG+ G + SE S D ++D +LN GDEV K + +DR+ I LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATQVLNVGDEVEAKYVGVDRKNRVINLSV 519
Query: 258 KQLEE 262
+ +E
Sbjct: 520 RAKDE 524
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|290473875|ref|YP_003466749.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
gi|289173182|emb|CBJ79955.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
Length = 557
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLMLEKAYEEAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 250 RERTRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L IKQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGIKQLAEDPF 441
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA + L DG+ G + SE S D I+D +LN GDEV K + +DR+ + LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRIEDATQVLNVGDEVEAKYVGVDRKNRIVNLSV 519
Query: 258 KQLEE 262
+ +E
Sbjct: 520 RAKDE 524
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|423207049|ref|ZP_17193605.1| 30S ribosomal protein S1 [Aeromonas veronii AMC34]
gi|404621342|gb|EKB18231.1| 30S ribosomal protein S1 [Aeromonas veronii AMC34]
Length = 556
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDTVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|402699907|ref|ZP_10847886.1| 30S ribosomal protein S1 [Pseudomonas fragi A22]
Length = 564
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFHNDAGELNINIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWV-AI 272
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 273 KARYPEG 279
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 269 WVAIKARYPEGTRVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 325
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 326 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIF 382
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 383 IGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 437
Query: 260 LEEDPLLETLEK 271
LE DP E +++
Sbjct: 438 LESDPFSEYVQE 449
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVTARVTNL 289
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 290 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 343
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 344 ISLGIKQCKSNP 355
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L PD + + SE+S D I+D R++L EG+EV K+I +DR+ I LSI
Sbjct: 467 GAIITL-APD----IEATLKASEISRDRIEDARNVLKEGEEVEAKIISVDRKSRVIQLSI 521
Query: 258 K 258
K
Sbjct: 522 K 522
>gi|225873902|ref|YP_002755361.1| 30S ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
Length = 637
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 28/179 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G + G GGL V + FLP Q+ P +++ G I V+VI+ N
Sbjct: 194 GIVAGRVKGGLTVDI-GIKAFLPGSQLE-----IRPVRNL----DAYIGQPIEVRVIKLN 243
Query: 165 EEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFIHLRFPDGLYHL 212
++ +V S K+ + + +++ + I G DYGAF+ + DGL H+
Sbjct: 244 KKRGNVVVSRKEILEEEQTAKRSETLEHLEEGSILTGTVKNLTDYGAFVDMGGIDGLLHI 303
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
T ++SW + RD++N GDE++VKV+K DR+K R++L KQL DP L+ E+
Sbjct: 304 T------DMSWGRLTHPRDLVNVGDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLDATER 356
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I G ++ G V + G L MS P+ ++ G I
Sbjct: 273 EEGSILTGTVKNLTDYGAFVDMGGIDGLLHITDMSWGR-LTHPRDLVN------VGDEIQ 325
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + + +++ K W + R V GR DYG+F+ L
Sbjct: 326 VKVLKFDRDKQRVSLGFKQLTPDPWLDATERYPVGARVRGRVLSVTDYGSFVELE----- 380
Query: 210 YHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVHVSE++W ++ +L GDEV V+ ++ RI+L +KQL+++P ET
Sbjct: 381 QGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQLQDNP-WET 439
Query: 269 LEKVIPQG 276
L P G
Sbjct: 440 LGDKYPTG 447
>gi|119774871|ref|YP_927611.1| 30S ribosomal protein S1 [Shewanella amazonensis SB2B]
gi|119767371|gb|ABL99941.1| SSU ribosomal protein S1P [Shewanella amazonensis SB2B]
Length = 555
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+DA+ V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFANRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIEAVVLSVDPERERISLGVKQTEDDPF 441
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKTNP 353
>gi|330830010|ref|YP_004392962.1| 30S ribosomal subunit protein S1 [Aeromonas veronii B565]
gi|406676711|ref|ZP_11083896.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
gi|423209287|ref|ZP_17195841.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
gi|328805146|gb|AEB50345.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
component of the degradosome [Aeromonas veronii B565]
gi|404617145|gb|EKB14081.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
gi|404625025|gb|EKB21842.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
Length = 556
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDTVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|423096548|ref|ZP_17084344.1| ribosomal protein S1 [Pseudomonas fluorescens Q2-87]
gi|397886827|gb|EJL03310.1| ribosomal protein S1 [Pseudomonas fluorescens Q2-87]
Length = 561
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWV-AI 272
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 273 KARYPEG 279
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 269 WVAIKARYPEGTRVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 325
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 326 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIF 382
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 383 IGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 437
Query: 260 LEEDPLLETLEK 271
LE DP E +++
Sbjct: 438 LESDPFSEYVQE 449
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y +RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 272
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KA 538
Query: 273 IPQG 276
P+G
Sbjct: 539 APEG 542
>gi|404493519|ref|YP_006717625.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
gi|77545561|gb|ABA89123.1| ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
Length = 573
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 31/238 (13%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F+ + ++ ++ + + + N S S+ AD + E + EG
Sbjct: 65 IIPLAEFADESGQVDIKVGDKIDVLFERRENENGLISLSKEKADRQKIWNSLEEDAVVEG 124
Query: 106 KIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
+I GGL V + FLP Q+ P +++ + L G K+I+ N+
Sbjct: 125 RIAARIKGGLSVDI-GVNAFLPGSQVDL-----RPVRNLDK----LLGETFEFKIIKLNK 174
Query: 166 EMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLT 213
+V S +++++ + + VG DYGAFI L DGL H+T
Sbjct: 175 RRGNIVLSRRVLLEEQRESLRQDTLETLAEDQEVVGVVKNLTDYGAFIDLGGIDGLLHIT 234
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++SW + D+L GD+++VKV+K DREK R++L +KQL DP L EK
Sbjct: 235 ------DMSWGRVAHPSDVLAVGDKIKVKVLKFDREKERVSLGLKQLTADPWLSVAEK 286
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W + +G GK+ G V V G + +MS + K P K I I
Sbjct: 280 WLSVAEKYPTGNRVSGKVVSLTDYGAFVELDEGVEGLIHVSEMSWTKRIKHPSK-ILNIG 338
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 203
+ +++V V +N + + + W + + I G+ D+G F+ +
Sbjct: 339 DDIESVVLAVDV--SNRRISLGLKQIERNPWEVIGEKFPIGTIIEGQVKNITDFGIFVGV 396
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG+ GLVH+S++SW I+ ++ +GD V+ V+ ID+E R +L IKQL
Sbjct: 397 --DDGI---DGLVHISDLSWTKRIKHPSELFKKGDVVKAVVLNIDQENERFSLGIKQLAS 451
Query: 263 DP 264
DP
Sbjct: 452 DP 453
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I EG+++ G+ V + G + +S + K P + + G ++
Sbjct: 377 GTIIEGQVKNITDFGIFVGVDDGIDGLVHISDLSWTKRIKHPSELFKK------GDVVKA 430
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
V+ ++E ++ K W ++R + G+ D+G F+ +
Sbjct: 431 VVLNIDQENERFSLGIKQLASDPWQTIATRYAPGTMISGKVTSVTDFGIFLEVE-----E 485
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GL+HVSE+S + + +D GD + V+ +D E +I LSIK +
Sbjct: 486 GIEGLIHVSEISKEKVDSPKDFAKVGDNLEAVVLHVDTEDKKIALSIKHV 535
>gi|398859100|ref|ZP_10614782.1| ribosomal protein S1 [Pseudomonas sp. GM79]
gi|398237713|gb|EJN23459.1| ribosomal protein S1 [Pseudomonas sp. GM79]
Length = 560
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L V
Sbjct: 483 SEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSLNSVQDA 542
Query: 276 GLEPYLKSFYKKMV 289
+ + + K+ +
Sbjct: 543 PADTTMAALLKQAM 556
>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
Length = 389
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W ++G I E ++ GGL+V + GF+P M H ++
Sbjct: 94 WSDLEQKMQAGEIIEAAVKEVVKGGLVVDV-GVRGFIP-ASMVERHFVED--------FS 143
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWN--KYSSRVNVEDIFVGR----------DY 197
G +++KV++ ++E K++ S K + + K + ++ I VG+ D+
Sbjct: 144 DYKGKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDF 203
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
G F+ + DGL VHVSE++W+ + D++ EGD+V+VKV+KIDRE RI LSI
Sbjct: 204 GVFVDIGGVDGL------VHVSELAWNRVDKPSDVVKEGDKVKVKVLKIDRENERIGLSI 257
Query: 258 KQLEEDP 264
K+ + P
Sbjct: 258 KETQAGP 264
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG +Q G+ V + G + +++ + K P + E G + VK
Sbjct: 190 GQVLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDK-PSDVVKE------GDKVKVK 242
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ + E +++ S K+ W + I G +GAFI L P
Sbjct: 243 VLKIDRENERIGLSIKETQAGPWASVAEDFKAGSILNGTVKRLVSFGAFIELA-P----G 297
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+S+++ + ++L EG EV+VKV+ + ++ RI+LSI+ +EED
Sbjct: 298 IEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQEQRISLSIRAVEED 349
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK----DAVW 179
G +P ++SP H K + ++ G VKVI+ N+E ++LV S+K ++ W
Sbjct: 42 GLIPISELSPLHVEK-----VSDVVA--VGDTFEVKVIKLNDEKEELVVSKKAVAMESSW 94
Query: 180 NKYSSRVNVEDIFVGRDYGAFIHLRFPDGL---YHLTGLVHVSEVSWDLIQDIRDILNEG 236
+ ++ +I A + GL + G + S V ++D D +G
Sbjct: 95 SDLEQKMQAGEII-----EAAVKEVVKGGLVVDVGVRGFIPASMVERHFVEDFSDY--KG 147
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ +KV+++D+EK+++ LS K + ED +
Sbjct: 148 KTLALKVVEMDKEKNKVILSHKAVLEDEV 176
>gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
Length = 406
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 22/174 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT-GSIISV 158
G I +GKI G + + G + Q++ H K+P A LT G ++V
Sbjct: 206 GDIVKGKIARLTNFGAFIDLGGVDGLVHISQIAYEH-VKDP-------ADVLTVGEEVNV 257
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 210
K++ NEE ++ S K+ + W+ R V + G +GAF+ + FP
Sbjct: 258 KILSVNEEEGRISLSIKETLPGPWDDIEERAAVGSVLDGLVKRLTSFGAFVEV-FP---- 312
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S + I ++LNEGDE++VKV++++ R++LSIK LEE P
Sbjct: 313 GVEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVNPTDQRLSLSIKALEEKP 366
>gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
gi|340782136|ref|YP_004748743.1| 30S ribosomal protein S1p [Acidithiobacillus caldus SM-1]
gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
gi|340556289|gb|AEK58043.1| SSU ribosomal protein S1p [Acidithiobacillus caldus SM-1]
Length = 573
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ ++R + W+ E G + G + G GG V + FLP +
Sbjct: 95 REKARRAKTWEDLEKAFEEGAVVHGFLTGKVKGGFTVSIDGVRAFLPGSLVDV------- 147
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG---- 194
+ + ++A L G + +K+I+ + + +V S + V + S+ +E I G
Sbjct: 148 -RPVRDVAY-LEGKDLEMKIIKLDRKRNNVVVSRRAVVEQEQSAERGALLESIQEGAILE 205
Query: 195 ------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAFI L DGL H+T ++ W ++ ++++ GDEVRV V+K DR
Sbjct: 206 GVVKNLTDYGAFIDLGGIDGLLHIT------DMGWRRVKHPSEVVSAGDEVRVMVLKFDR 259
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
E+ RI+L +KQL EDP + + + P+G + K
Sbjct: 260 ERGRISLGMKQLGEDP-WQDISRRYPEGTRIFGK 292
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y E I+ GK+ G V V G + ++ ++ P K++H
Sbjct: 280 SRRYPEGTRIF-GKVTNITDYGAFVEIEEGVEGLVHVSEIDWTNKNLNPAKALH------ 332
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K + W +++ D G+ D+G FI L
Sbjct: 333 LGQEVEVMVLDIDEERRRISLGIKQCLPNPWEEFAQNYQKGDRVSGQIKSITDFGVFIGL 392
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ GL+H+S++SWD + +RD +GDE+ V+ ID E+ RI+L IKQ+E
Sbjct: 393 E-----GGIDGLIHLSDLSWDRPGEEAVRD-FKKGDELEAVVLSIDPERERISLGIKQME 446
Query: 262 EDPLLE 267
DP ++
Sbjct: 447 TDPFIQ 452
>gi|238753503|ref|ZP_04614866.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
gi|238708456|gb|EEQ00811.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
Length = 557
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 35/246 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGK 106
PV +F ++ V+ LD D SR A A E F
Sbjct: 48 IPVEQFKNAQGELEIQVGDEVDVALDAVEDGFGETQLSREKAKRHEAWLTLEKAFEVAAT 107
Query: 107 IQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+ G NG GG V + FLP + + + ++H L G + KVI+
Sbjct: 108 VIGVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTLH-----LEGKELEFKVIK 158
Query: 163 ANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLY 210
+++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 159 LDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL 218
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 219 HIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWV-AIA 271
Query: 271 KVIPQG 276
K P+G
Sbjct: 272 KRYPEG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W ++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKSNP 353
>gi|398973366|ref|ZP_10684325.1| ribosomal protein S1 [Pseudomonas sp. GM25]
gi|398143082|gb|EJM31964.1| ribosomal protein S1 [Pseudomonas sp. GM25]
Length = 561
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKVIPQ 275
SE+S D ++D R++L EG +V K+I +DR+ I LSIK EE +++L K P+
Sbjct: 483 SEISRDRVEDARNVLKEGQQVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KAAPE 541
Query: 276 G 276
G
Sbjct: 542 G 542
>gi|352101957|ref|ZP_08959042.1| 30S ribosomal protein S1 [Halomonas sp. HAL1]
gi|448746309|ref|ZP_21727977.1| Ribosomal S1 synthesis/modification protein [Halomonas titanicae
BH1]
gi|350600250|gb|EHA16319.1| 30S ribosomal protein S1 [Halomonas sp. HAL1]
gi|445566171|gb|ELY22278.1| Ribosomal S1 synthesis/modification protein [Halomonas titanicae
BH1]
Length = 559
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK A E I +G I G GG V S+ FLP P
Sbjct: 86 REKAKRAEA-WKILEAAFEKDEIIKGVINGKVKGGFTVEVDSIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + ++ ++S + + E +E++A+ ++ I
Sbjct: 145 AHLENKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQGLEPY 280
R++L +KQL EDP + E+ P+G++ +
Sbjct: 254 RVSLGLKQLGEDPWVNIKER-YPEGMKVH 281
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 232
W +++ N D G D+G FI L + GLVH+S++SW D ++
Sbjct: 354 WETFNTDYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTDTGEEAVRS 408
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQ++ DP+ E L
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYL 445
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K ++D + L+K
Sbjct: 474 VIAVLKASEISADRVEDARNVLNEGDSVEARIVSVDRKSRQINLSVKAKDQDDTRQNLKK 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 MREQ 537
>gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|404489681|ref|YP_006713787.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682764|ref|ZP_17657603.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348671|gb|AAU41305.1| 30S ribosomal protein S1-like protein [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|383439538|gb|EID47313.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
Length = 382
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 20/174 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E+G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EAGQVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W+ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSNIGEKVKPGDVLDGKVQRLVSFGAFVEV-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+S++S I ++L EG +V+VKV+ ++ E+ RI+LS+K+LEE+
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEEEERISLSMKELEEN 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ ES ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFESKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +++ V++ + + +++ S + V + S R + + G+ D+
Sbjct: 142 DYKGKTLTLIVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K+ P EKV P
Sbjct: 256 KETLPGPWSNIGEKVKP 272
>gi|410092246|ref|ZP_11288778.1| 30S ribosomal protein S1 [Pseudomonas viridiflava UASWS0038]
gi|409760411|gb|EKN45559.1| 30S ribosomal protein S1 [Pseudomonas viridiflava UASWS0038]
Length = 561
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F +A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNDAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 411 KGDELDTVILSVDPERERISLGIKQLESDPFSE 443
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 286
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 287 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 340
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 341 RISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|359396508|ref|ZP_09189559.1| 30S ribosomal protein S1 [Halomonas boliviensis LC1]
gi|357969186|gb|EHJ91634.1| 30S ribosomal protein S1 [Halomonas boliviensis LC1]
Length = 559
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK A E I +G I G GG V S+ FLP P
Sbjct: 86 REKAKRAEA-WKILEAAFEKDEIIKGVINGKVKGGFTVEVDSIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + ++ ++S + + E +E++A+ ++ I
Sbjct: 145 AHLENKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQGLEPY 280
R++L +KQL EDP + E+ P+G++ +
Sbjct: 254 RVSLGLKQLGEDPWVNIKER-YPEGMKVH 281
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 232
W +++ N D G D+G FI L + GLVH+S++SW D ++
Sbjct: 354 WETFNTDYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTDTGEEAVRS 408
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQ++ DP+ E L
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYL 445
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ L+ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K ++D + L+K
Sbjct: 474 VIALLKASEISADRVEDARNVLNEGDSVEARIVSVDRKSRQINLSVKAKDQDDTRQNLKK 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 IREQ 537
>gi|331005955|ref|ZP_08329301.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
gi|330420250|gb|EGG94570.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
Length = 560
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK + + + G I G GG V + FLP + +
Sbjct: 85 SREKAKRAEA-WKVLESAHAAEEVMTGVINGKVKGGFTVDVAGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ ++H L G + KVI+ +++ +V S + + S+ +E+
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVMETANSAEREELLATLEEGAK 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W I+ +I+N GDE+ V+V+K
Sbjct: 195 AKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVRVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLE 267
DRE++R++L +KQL EDP +E
Sbjct: 249 DRERNRVSLGLKQLGEDPWVE 269
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K + G + V V++ +E +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVD------LGDEVEVMVLEIDEGRRRISLGIKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+ SR D G+ D+G F+ L DG + GLVH+S++SW D ++
Sbjct: 356 AFGSRFQKGDKISGKIKSITDFGIFLGL---DG--GIDGLVHLSDISWTDTGEEAVRNYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GD++ ++ +D E+ RI+L IKQLEED
Sbjct: 411 KGDDLETVILAVDPERERISLGIKQLEEDSF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 ETANSAEREELLATLEEGAKAKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I V+V++ + E ++ K + N+Y + +
Sbjct: 234 IVN------VGDEIDVRVLKFDRERNRVSLGLKQLGEDPWVEITNRYPVGAKAKAVVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F + + GLVHVSE+ W ++I +++ GDEV V V++ID + R
Sbjct: 288 TDYGCFAEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVDLGDEVEVMVLEIDEGRRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +E+P
Sbjct: 342 ISLGIKQCQENP 353
>gi|145630844|ref|ZP_01786621.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
gi|144983504|gb|EDJ90972.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
Length = 412
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 254 TLSIKQLEEDP 264
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 323
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S ++P++
Sbjct: 109 WERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHIS----TRKPKED------ 158
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 159 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGSVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 323
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ I N GG LVR L GF+P +S ++P++
Sbjct: 108 WERVRQLQKEDATVRATIFATNRGGALVRIEGLRGFIPGSHIS----SRKPKEE------ 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ NK V G + YGAFI +
Sbjct: 158 -LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKPYGAFIDI- 215
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S + + + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 216 -----GGVSGLLHISEISHEHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPNP 270
>gi|398839977|ref|ZP_10597217.1| ribosomal protein S1 [Pseudomonas sp. GM102]
gi|398111565|gb|EJM01447.1| ribosomal protein S1 [Pseudomonas sp. GM102]
Length = 563
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|398871479|ref|ZP_10626793.1| ribosomal protein S1 [Pseudomonas sp. GM74]
gi|398890638|ref|ZP_10644193.1| ribosomal protein S1 [Pseudomonas sp. GM55]
gi|398917344|ref|ZP_10658118.1| ribosomal protein S1 [Pseudomonas sp. GM49]
gi|398926474|ref|ZP_10662470.1| ribosomal protein S1 [Pseudomonas sp. GM48]
gi|398952118|ref|ZP_10674580.1| ribosomal protein S1 [Pseudomonas sp. GM33]
gi|426408276|ref|YP_007028375.1| 30S ribosomal protein S1 [Pseudomonas sp. UW4]
gi|398155615|gb|EJM44054.1| ribosomal protein S1 [Pseudomonas sp. GM33]
gi|398170741|gb|EJM58669.1| ribosomal protein S1 [Pseudomonas sp. GM48]
gi|398173038|gb|EJM60884.1| ribosomal protein S1 [Pseudomonas sp. GM49]
gi|398187904|gb|EJM75228.1| ribosomal protein S1 [Pseudomonas sp. GM55]
gi|398206035|gb|EJM92808.1| ribosomal protein S1 [Pseudomonas sp. GM74]
gi|426266493|gb|AFY18570.1| 30S ribosomal protein S1 [Pseudomonas sp. UW4]
Length = 563
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 483 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|330808293|ref|YP_004352755.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696083|ref|ZP_17670573.1| ribosomal protein S1 [Pseudomonas fluorescens Q8r1-96]
gi|327376401|gb|AEA67751.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388002876|gb|EIK64203.1| ribosomal protein S1 [Pseudomonas fluorescens Q8r1-96]
Length = 562
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|428222610|ref|YP_007106780.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427995950|gb|AFY74645.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 335
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ I N GG LVR L GF+P +S ++ +
Sbjct: 109 WERVRQLQKEDATVRALIFATNRGGALVRIEGLRGFIPGSHIS-----------TRKVKE 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLR 204
L + +K ++ +E+ +LV S + A+ NK V + G + YGAFI +
Sbjct: 158 ELVNEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFIDI- 216
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I ++ N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GGVSGLLHISEISHDHIDTPHNVFNVNDEVKVMIIDLDAERGRISLSTKQLEAEP 271
Query: 265 -LLETLEKVIPQGLEPYLKSFYKKM 288
+ +V+ G E F ++M
Sbjct: 272 GDMVKNPQVVYDGAEEMAAKFREQM 296
>gi|146282681|ref|YP_001172834.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
gi|145570886|gb|ABP79992.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
Length = 582
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 69 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 128
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 129 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 179
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 180 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 239
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 240 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 292
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 293 KARYPEG 299
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 289 WVAIKARYPEGTRVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 345
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 346 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIKSITDFGIF 402
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 403 IGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 457
Query: 260 LEEDPL 265
LE+DP
Sbjct: 458 LEDDPF 463
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 197 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 256 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 309
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 310 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 363
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 364 ISLGIKQCKSNP 375
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 496 IEATLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 542
>gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H]
gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H]
Length = 553
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 58 NAAKITPTTVNPILDDSSDANN---------RQSQSRSSADWKA-ARAYKESGFIYEGKI 107
NAA V +D + DA + R+ R A W+ +AY+E + G I
Sbjct: 55 NAAGEVEVVVGDEIDVALDATDDGFGETILSREKAKRHEA-WQVLEKAYEEKETVI-GVI 112
Query: 108 QGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM 167
G GG V + FLP + + + + H L G + KVI+ +++
Sbjct: 113 NGKVKGGFTVEVSDIRAFLPGSLVD----VRPVRDTAH-----LEGKPLEFKVIKLDQKR 163
Query: 168 KKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGL 215
+V S + + + S+ + +E + G+ DYGAF+ L DGL H+T
Sbjct: 164 NNVVVSRRAVIEAEGSAERDELLESLAEGQEVKGIVKNLTDYGAFVDLGGIDGLLHIT-- 221
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP
Sbjct: 222 ----DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGMKQLGEDP 266
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K + W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDTVEVLVLEIDEERRRISLGLKQCIANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD-IRDILN 234
+++ N D G+ D+G FI L DG + GLVH+S++SW ++ +RD
Sbjct: 356 EFAKNFNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWAGGEEAVRD-YK 409
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ E+DP
Sbjct: 410 KGDEIDAIVLQVDPERERISLGVKQAEDDPF 440
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-VKHPSEIVN------VGDEIQVKVLKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
E ++ K + W ++R GR DYG F+ ++ + GLV
Sbjct: 250 RERTRVSLGMKQLGEDPWVAIANRYPEGSKLSGRVTNLTDYGCFVEIQ-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEE 356
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + VS++S + I+D +L GD+V + + +DR+ I+LSIK Q +E ++
Sbjct: 473 VEGYLRVSDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIKAKDQADEREAMDN 532
Query: 269 LEKVIPQGLEPYLKSF 284
L +V GL +F
Sbjct: 533 LNQVEETGLSAMAAAF 548
>gi|359412969|ref|ZP_09205434.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
DL-VIII]
gi|357171853|gb|EHJ00028.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
DL-VIII]
Length = 634
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 21/185 (11%)
Query: 84 SRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS 143
++ + D KA + G I +G+++ F G V + G L Q+S +H K+
Sbjct: 463 AKDAEDSKAWEKFN-LGDIVKGEVKRFTNFGAFVEVNGIDGLLHLSQISWNHV-----KN 516
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR----- 195
+ ++ K G II VK+I ++E KKL S K+ + W + E I +G+
Sbjct: 517 VSDVLK--EGQIIDVKIIGLDKEAKKLSLSMKELMPKPWENVKEKYPEESIVLGKVVRLN 574
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L P + GLVH+S++S I+ ++L G E++ K++ +D E RI+L
Sbjct: 575 DFGAFVELE-PG----VDGLVHISKISHSRIEHPSEVLKVGQEIKAKILSVDEENKRISL 629
Query: 256 SIKQL 260
SIK +
Sbjct: 630 SIKDI 634
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 175 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI 229
KDA +K + N+ DI G ++GAF+ + DGL HL S++SW+ ++++
Sbjct: 464 KDAEDSKAWEKFNLGDIVKGEVKRFTNFGAFVEVNGIDGLLHL------SQISWNHVKNV 517
Query: 230 RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
D+L EG + VK+I +D+E +++LS+K+L P EK
Sbjct: 518 SDVLKEGQIIDVKIIGLDKEAKKLSLSMKELMPKPWENVKEK 559
>gi|406899169|gb|EKD42518.1| hypothetical protein ACD_73C00126G0001 [uncultured bacterium]
Length = 525
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 34/245 (13%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F T +IT ++ +++ D + S+ AD W + ESG
Sbjct: 20 VVPLEEFRTFDGEITVQPGDEIDVMVEQLEDGSGNIILSKEKADAMRSWDRVQQVYESGA 79
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ EG I GG+ V + FLP Q+ +P KS+ + L + K++
Sbjct: 80 VIEGVIVNKIKGGMSVNLGGIKAFLPASQIDL-----KPVKSLDK----LIATKCRFKIL 130
Query: 162 QANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+ N+ +V S E++++ + + + + G DYGAF+ L DGL
Sbjct: 131 KLNQSKGNIVLSRRTVLEEERESLKKELLTNLREGQVVAGTVKNITDYGAFVDLGGIDGL 190
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+H++++SW + + LN GDE+ V V+K ++E +++L +KQL+ DP L+
Sbjct: 191 ------LHITDISWGRVNHPNEALNVGDELEVVVLKYEKESEKVSLGLKQLQPDPWLDVA 244
Query: 270 EKVIP 274
+K P
Sbjct: 245 KKFTP 249
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+GKI G+ V + G + +++ S K P K + G ++ ++
Sbjct: 254 KGKIVNVTDYGVFVEIADGIEGLVHVSELTWSKKVKHPSKLVK------VGDVVDAVILD 307
Query: 163 ANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTG 214
+ + +++ K D++ +K+ ++ I D+G F+ + + + G
Sbjct: 308 VDAQNRRISMGIKQLEANPWDSLEHKFPIGTKIKGIVRNITDFGVFLGIEGEE----IDG 363
Query: 215 LVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
LVH+S++SWD + +I+ +G E+ V+ +DRE R L +KQL +DP
Sbjct: 364 LVHISDLSWDKNAKHPSEIVQKGQELEAIVLSVDRENERFALGVKQLMDDP 414
>gi|329123269|ref|ZP_08251837.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
gi|327471478|gb|EGF16926.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + +++ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEVVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|441502294|ref|ZP_20984305.1| SSU ribosomal protein S1p [Photobacterium sp. AK15]
gi|441430041|gb|ELR67492.1| SSU ribosomal protein S1p [Photobacterium sp. AK15]
Length = 556
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
PV +F A ++ V+ LD D SR A A +AY+++
Sbjct: 48 IPVEEFKNAAGELEIEVGAEVDVALDAVEDGFGETKLSRDKAKRHEAWIQLEKAYEDAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GTKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDRVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLE-----GGIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQIEEDPF 441
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|398995415|ref|ZP_10698299.1| ribosomal protein S1 [Pseudomonas sp. GM21]
gi|398130007|gb|EJM19359.1| ribosomal protein S1 [Pseudomonas sp. GM21]
Length = 561
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 272
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KT 538
Query: 273 IPQG 276
P+G
Sbjct: 539 APEG 542
>gi|378949573|ref|YP_005207061.1| protein RpsA [Pseudomonas fluorescens F113]
gi|359759587|gb|AEV61666.1| RpsA [Pseudomonas fluorescens F113]
Length = 564
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|157375435|ref|YP_001474035.1| 30S ribosomal protein S1 [Shewanella sediminis HAW-EB3]
gi|157317809|gb|ABV36907.1| ribosomal protein S1 [Shewanella sediminis HAW-EB3]
Length = 555
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 50 CPVGKFSTNAAKITPTTVNPI---LDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F + ++ + + + LD D SR A A +AY+++
Sbjct: 48 IPAEQFKNDQGELEISVGDSVAVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTAH-----LENKDLEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+DA+ +V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++ R D G+ D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFAERFQKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEINAVVLSVDPERERISLGVKQTEDDPF 441
>gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
Length = 655
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 100/192 (52%), Gaps = 25/192 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ +A ++ GK+ GGL V + + GF+P Q++ H + ++
Sbjct: 366 WEKLQAAAQANETVTGKVTAVVKGGLAVSLYGVRGFVPASQVAVQH--------VADLTP 417
Query: 150 --GLTGSIISVKVIQANEEM----KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYG 198
G T ++ +++ QA +++ +K++ E+ + SR+ I G D+G
Sbjct: 418 YVGQTLELLPIEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFG 477
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
F+ L DGL +H+S++SW +++ +++N GDEV+V V K+D + RI+LS+K
Sbjct: 478 VFVDLGGVDGL------IHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLK 531
Query: 259 QLEEDPLLETLE 270
+++ DP + +E
Sbjct: 532 RVQRDPWYDVVE 543
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAF+ ++ P + GLVH+SE++ + ++++ G V VK++ ID+E RI+LS
Sbjct: 561 FGAFVEVK-PG----VEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKENKRISLS 615
Query: 257 IKQLEED 263
I Q ++D
Sbjct: 616 IAQAQQD 622
>gi|399002592|ref|ZP_10705275.1| ribosomal protein S1 [Pseudomonas sp. GM18]
gi|398124507|gb|EJM14015.1| ribosomal protein S1 [Pseudomonas sp. GM18]
Length = 564
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+GDE+ ++ +D E+ RI+L IKQLE DP E +++
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSEYVQE 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|386265722|ref|YP_005829214.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
gi|309972958|gb|ADO96159.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K ++ G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVN------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|145633320|ref|ZP_01789051.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
gi|144986166|gb|EDJ92756.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKTNPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|440739723|ref|ZP_20919229.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
gi|447915934|ref|YP_007396502.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
gi|440379053|gb|ELQ15658.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
gi|445199797|gb|AGE25006.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
Length = 563
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
L P+ +F +A ++ V+ LD D SR A E+ F E
Sbjct: 49 LIPLEQFYNDAGELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 108
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 109 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 159
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 160 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 220 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 304 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 357
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 358 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 413 KGDELDTVILSVDPERERISLGIKQLESDPFSE 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 177 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 235
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 236 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 288
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 289 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 342
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 343 RISLGIKQCKSNP 355
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 476 IEATLKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|373466747|ref|ZP_09558058.1| ribosomal protein S1 [Haemophilus sp. oral taxon 851 str. F0397]
gi|417841094|ref|ZP_12487200.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19501]
gi|419839972|ref|ZP_14363372.1| ribosomal protein S1 [Haemophilus haemolyticus HK386]
gi|341949994|gb|EGT76591.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19501]
gi|371760005|gb|EHO48710.1| ribosomal protein S1 [Haemophilus sp. oral taxon 851 str. F0397]
gi|386908710|gb|EIJ73397.1| ribosomal protein S1 [Haemophilus haemolyticus HK386]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|91229576|ref|ZP_01262936.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
gi|91187384|gb|EAS73741.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
Length = 389
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 29/243 (11%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGS 154
+ G I G GG V + FLP P +H KE + + ++ +
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNV 166
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLT 213
++S + + +E E+D + V+ I DYGAF+ L DGL H+T
Sbjct: 167 VVSRRAVIESENS-----VERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT 221
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
+++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 222 ------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AIAKRY 274
Query: 274 PQG 276
P+G
Sbjct: 275 PEG 277
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
>gi|343496480|ref|ZP_08734576.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
gi|342821093|gb|EGU55887.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
Length = 556
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ T V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGTEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D ++D IL+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL-----VEGVEGYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE + +L K
Sbjct: 520 KAKDEAEEQEAMASLNK 536
>gi|342904490|ref|ZP_08726289.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21621]
gi|341952911|gb|EGT79425.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21621]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWTELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDALKERISLGIKQLEEDPF 441
>gi|145629272|ref|ZP_01785071.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
gi|145636918|ref|ZP_01792583.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
gi|260581139|ref|ZP_05848959.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
gi|260582648|ref|ZP_05850437.1| ribosomal protein S1 [Haemophilus influenzae NT127]
gi|319776105|ref|YP_004138593.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
gi|319896914|ref|YP_004135109.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
gi|378697445|ref|YP_005179403.1| 30S ribosomal protein S1 [Haemophilus influenzae 10810]
gi|144978775|gb|EDJ88498.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
gi|145269999|gb|EDK09937.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
gi|260092167|gb|EEW76110.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
gi|260094320|gb|EEW78219.1| ribosomal protein S1 [Haemophilus influenzae NT127]
gi|301169961|emb|CBW29565.1| 30S ribosomal subunit protein S1 [Haemophilus influenzae 10810]
gi|317432418|emb|CBY80773.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
gi|317450696|emb|CBY86916.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|429214745|ref|ZP_19205908.1| 30S ribosomal protein S1 [Pseudomonas sp. M1]
gi|428155031|gb|EKX01581.1| 30S ribosomal protein S1 [Pseudomonas sp. M1]
Length = 560
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFNAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVSGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S R N D G D+G FI L + GLVH+S++SW+ ++
Sbjct: 356 DFSGRFNKGDKISGTIKSITDFGIFIGLEGG-----IDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVIARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LSIK
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSIK 520
>gi|417843391|ref|ZP_12489466.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21127]
gi|341949870|gb|EGT76469.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21127]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|335428822|ref|ZP_08555732.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|335430794|ref|ZP_08557680.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|334887334|gb|EGM25666.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|334891763|gb|EGM30009.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
Length = 466
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 32/209 (15%)
Query: 76 DANNRQSQSR---------SSADWKAARAY---KESGFIYEGKIQGFNGGGLLVRFFSLV 123
D N R++++R ++KA +A E G +YEG + G LV
Sbjct: 149 DFNKRKNRTRIKVSRTIVIKEDNFKAKQAAFNALEVGGLYEGIVDRVEKYGALVVANDFR 208
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G +P ++S K+ + I+E G ++VKVI +E + +S K + W+
Sbjct: 209 GLVPNNELS-HLPFKKTEDVINE------GDTVNVKVIDKDENRMRATYSVKALLPKPWD 261
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
++ +N D+ G+ D+GAF+++ L + GL+H +EVS++ + +D+L E
Sbjct: 262 IANNELNEGDVIKGKVVRITDFGAFVNV-----LPLVDGLLHKNEVSYNPNVEFKDVLEE 316
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDP 264
G E+ VKV+ IDR + R++LS++ L+++P
Sbjct: 317 GQEIEVKVLNIDRNRERLSLSLRALKDNP 345
>gi|148827070|ref|YP_001291823.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
gi|148718312|gb|ABQ99439.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|358638543|dbj|BAL25840.1| 30S ribosomal protein S1 [Azoarcus sp. KH32C]
Length = 568
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ ++ + D + + +++ A W G + +G I G
Sbjct: 67 GELEVKVGDFVHVAIDALEDGYGETRLSREKAKRIAAWNDLEKALNEGTLVKGLISGRVK 126
Query: 113 GGLLVRFFSLVGFLP--FPQMSP-----SHSCKEPQKSIHEIAKGLTGSIISVKVI---Q 162
GGL V S+ FLP M P + KE + + ++ + ++S + +
Sbjct: 127 GGLTVMTNSIRAFLPGSLVDMRPVKDTTPYEGKEFEFKVIKLDRKRNNVVVSRRAVLEET 186
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVS 222
EE +KL+ + K+ K V++I DYGAF+ L DGL H+T L +
Sbjct: 187 MGEEREKLLANLKEGTVVKGV----VKNI---TDYGAFVDLGGIDGLLHITDL------A 233
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
W ++ ++L+ GDE+ KV+K D+EK+R++L +KQL EDP + + + PQG + K
Sbjct: 234 WRRVRHPSEVLSVGDEIEAKVLKFDQEKNRVSLGLKQLGEDPWV-GIARRYPQGTRLFGK 292
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 280 ARRYPQGTRLF-GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQ------ 332
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V +++ +E+ +++ K + W+ ++ D G+ D+G FI L
Sbjct: 333 LGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIKSITDFGVFIGL 392
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW D ++ +GDEV V+ ID E+ RI+L +KQLE
Sbjct: 393 ---DG--GIDGLVHLSDLSWSDSGEEAVRRFKKGDEVEAVVLAIDVERERISLGVKQLEG 447
Query: 263 DPL 265
DP
Sbjct: 448 DPF 450
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G + SE + + D+ +L EGDEV + +I +DR+ I LSI+ ++ + ++
Sbjct: 482 EVEGYLRASEAAAHRVDDLTTVLKEGDEVELMIINVDRKTRSINLSIRAKDQAEQSDAMQ 541
Query: 271 KVIPQ 275
K+ +
Sbjct: 542 KLASE 546
>gi|284007586|emb|CBA73155.1| 30S ribosomal protein S1 [Arsenophonus nasoniae]
Length = 569
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 97 SREKAKRHEAWLMLEKAYEDAETVM-GIINGKVKGGFTVELKGIRAFLPGSLVD----VR 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG-- 194
+ + H L G + KVI+ +++ +V S + + ++ S+ + +E++ G
Sbjct: 152 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDHLLENLQEGME 206
Query: 195 --------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 207 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 260
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DR+++R++L +KQL EDP + + K P+G
Sbjct: 261 DRDRTRVSLGLKQLGEDPWV-AIAKRYPEG 289
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 366 WQQFAETHNKNDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 420
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 421 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 453
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
EGKI+ G+ + + G + +S + + +E ++ E KG I+ V+Q
Sbjct: 380 EGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEE---AVREYKKG---DEIAAVVLQ 433
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+ E +++ K +N Y S I G+ GA I L + G
Sbjct: 434 VDAERERISLGVKQLAEDPFNNYLSAHKKGVIVTGKVVAVDAKGATIEL-----AAGVEG 488
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ SE S D ++D +LN GD V K +DR+ ITLS++ +E
Sbjct: 489 HLRASEASRDRVEDTTQVLNVGDTVEAKYTGVDRKNRIITLSVRAKDE 536
>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 284
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + E I E K+ N GG + L FLP ++ ++
Sbjct: 101 WEKVLSMAEEDQILEAKVIAVNRGGAICLVEGLRAFLPGSHLTGQLPDED---------- 150
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G+ + +K ++ N+E KLV S + AV + + ++ D+ G + YGAF+ +
Sbjct: 151 -LIGNNLQLKFLEVNQETNKLVVSNRKAVVEQQMADLSRGDLVAGMVKALKPYGAFVEVG 209
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+S++S+D I D+ +L G +V+ +I D+ RI LS K LE +P
Sbjct: 210 ------GMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRIALSTKTLEPEP 263
>gi|226943704|ref|YP_002798777.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
gi|226718631|gb|ACO77802.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
Length = 559
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGF 101
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFAADE 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ +G I G GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGIINGKVKGGFTVDINGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+SSR N D G D+G FI L + GLVH+S++SW + ++
Sbjct: 356 DFSSRYNKGDRITGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWNEQGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L +KQL +DP
Sbjct: 411 KGDELETVILSVDPERERISLGVKQLADDPF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK + D + +++
Sbjct: 474 IEAVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIKAKDVDDEKDAIKE 533
Query: 272 VIPQGLE 278
+ Q E
Sbjct: 534 LRKQETE 540
>gi|417845713|ref|ZP_12491739.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21639]
gi|341954782|gb|EGT81255.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21639]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
Length = 430
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 235 WDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGEN--------HEA-- 284
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N + +KLV SEK A + + V + G + YG FI L
Sbjct: 285 -LVGKTLGVAFLEVNPDTRKLVLSEKKAATAARFAELEVGQLVEGHVAAVKPYGLFIDL- 342
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ IR++ + GD V+ + ++D + RI L+ LE P
Sbjct: 343 -----GGISGLLHQSMITGGSLRSIREVFDHGDSVKALITELDPGRGRIALNTAMLEGQP 397
>gi|339494294|ref|YP_004714587.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386020965|ref|YP_005938989.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
gi|327480937|gb|AEA84247.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
gi|338801666|gb|AEJ05498.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 560
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELDTVILSVDPERERISLGIKQLEDDPF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|443468983|ref|ZP_21059180.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
gi|442898255|gb|ELS25009.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
Length = 559
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFNAE 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVSGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SSR N D G D+G FI L + GLVH+S++SW+ + ++
Sbjct: 356 DFSSRFNKGDKISGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R V R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVVARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G++ SE+S D ++D R++L EGDEV K+I IDR+ I+LS+K + D + ++
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMK 532
Query: 271 KVIPQGLE 278
++ Q +E
Sbjct: 533 ELRKQEVE 540
>gi|434398471|ref|YP_007132475.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428269568|gb|AFZ35509.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 296
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 24/219 (10%)
Query: 72 DDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
+D + Q + A W ESG + +I G N GG+ L GF+P +
Sbjct: 89 NDEGQVTLSRRQLQLQAAWDNVAEIAESGKSVQVRITGVNKGGVTGEIEGLRGFIPRSHL 148
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+ L G +++ ++ N + KKLV S++ A+ K ++V +
Sbjct: 149 EQRDNLD-----------SLVGQLLTATFLEVNPDDKKLVLSQRGAIQAKAMAKVEQGTL 197
Query: 192 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G+ YG F+ L DG TGL+H+ EVS I + I G ++V + ++
Sbjct: 198 VEGKIVSLKPYGVFVDL---DGA---TGLLHIKEVSNTHINSLTTIFKIGQIIKVVIAEV 251
Query: 247 DREKSRITLSIKQLEEDP--LLETLEKVIPQGLEPYLKS 283
D K+R++LSIK LEE P ++E L++V+ E + K+
Sbjct: 252 DEYKNRLSLSIKVLEEYPGEIVENLDQVMATAEERWQKA 290
>gi|68250248|ref|YP_249360.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
gi|68058447|gb|AAX88700.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|417840377|ref|ZP_12486514.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19107]
gi|341948601|gb|EGT75225.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19107]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|421619223|ref|ZP_16060185.1| 30S ribosomal protein S1 [Pseudomonas stutzeri KOS6]
gi|409778774|gb|EKN58458.1| 30S ribosomal protein S1 [Pseudomonas stutzeri KOS6]
Length = 560
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW + ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNEQGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|119477610|ref|ZP_01617760.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
gi|119449113|gb|EAW30353.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
Length = 559
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 79 NRQSQSRSSADWK---AARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH 135
+R+ R+ A WK AA A +ES G I G GG V S+ FLP +
Sbjct: 85 SREKAKRAEA-WKVLEAAYAAEES---VVGIINGKVKGGFTVDVNSIRAFLPGSLVD--- 137
Query: 136 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSS 184
+ +++ H L G + KVI+ +++ +V S E+D +
Sbjct: 138 -VRPVRETTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVMETANSAERDELLATLQE 191
Query: 185 RVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 243
+V+ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV
Sbjct: 192 GQSVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKV 245
Query: 244 IKIDREKSRITLSIKQLEEDP 264
+K DRE++R++L +KQL EDP
Sbjct: 246 LKFDRERNRVSLGLKQLGEDP 266
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V ++ +EE +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVMILDIDEERRRISLGIKQCMENPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+ + N D G D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 AFGRQFNKGDKISGGIKSITDFGIFIGL---DGA--IDGLVHLSDISWNETGEDAVRKYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDEIETVILSVDPERERISLGIKQLEDDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ETANSAERDELLATLQEGQSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K ++ +Y V+
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVSITGRYPEGARVKATITNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F + + GLVHVSE+ W ++I ++N GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ E+P
Sbjct: 342 ISLGIKQCMENP 353
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G + SE+S D ++D R+ L EGDEV VK+I IDR+ I LSIK
Sbjct: 474 IEGTLKASEISRDKVEDARNALKEGDEVEVKIISIDRKNRTIALSIK 520
>gi|229845053|ref|ZP_04465189.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
gi|229846877|ref|ZP_04466984.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
gi|229810366|gb|EEP46085.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
gi|229812025|gb|EEP47718.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|429335751|ref|ZP_19216371.1| 30S ribosomal protein S1 [Pseudomonas putida CSV86]
gi|428759641|gb|EKX81935.1| 30S ribosomal protein S1 [Pseudomonas putida CSV86]
Length = 558
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTRVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDE+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEIEAKIISVDRKSRNISLSIK 520
>gi|365175178|ref|ZP_09362615.1| ribosomal protein S1 [Synergistes sp. 3_1_syn1]
gi|363613517|gb|EHL65028.1| ribosomal protein S1 [Synergistes sp. 3_1_syn1]
Length = 526
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V + GF+P ++ P K L VK+I+ + ++LVF
Sbjct: 137 GGLIVSCCGIEGFIPISHLTQEGHGVNPGK--------LLDQEFPVKLIEKDRRKRRLVF 188
Query: 173 SEKD-------AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S + + + +V+ D+ G +G F++L + GLVH+SE
Sbjct: 189 SRRSLIEEELTGIRQAFYDQVHEGDVLEGDVSSITSFGVFVNL------GAMEGLVHISE 242
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
+SW ++I+ +GD V+VKVI ID+E +RI+LSI+Q +DP E+ P
Sbjct: 243 LSWQRNAKAKEIVAKGDHVKVKVIGIDKENNRISLSIRQTLDDPWTTAAERWTP 296
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G + EG + G+ V ++ G + ++S + K K I +AKG + V
Sbjct: 211 EGDVLEGDVSSITSFGVFVNLGAMEGLVHISELSWQRNAK--AKEI--VAKG---DHVKV 263
Query: 159 KVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
KVI ++E ++ S + D W + R + G ++GAF+ +
Sbjct: 264 KVIGIDKENNRISLSIRQTLDDPWTTAAERWTPGKVTEGTVTNLTEFGAFVEIE-----P 318
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ GL+H+ ++SW I+ +++L +G +V V +I+ D E+ RI+L KQL DP + E
Sbjct: 319 GVEGLIHIGDLSWTRIKHPKEVLKKGQKVEVSIIETDTERKRISLGYKQL-NDPWKDAAE 377
Query: 271 K 271
K
Sbjct: 378 K 378
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 25/200 (12%)
Query: 78 NNRQSQS-RSSAD--WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSP 133
NNR S S R + D W A G + EG + G V V G + +S
Sbjct: 272 NNRISLSIRQTLDDPWTTAAERWTPGKVTEGTVTNLTEFGAFVEIEPGVEGLIHIGDLSW 331
Query: 134 SHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKK--LVFSEKDAVW----NKYS--SR 185
+ K P++ + + G + V +I+ + E K+ L + + + W KY +
Sbjct: 332 TR-IKHPKEVLKK------GQKVEVSIIETDTERKRISLGYKQLNDPWKDAAEKYQKDAE 384
Query: 186 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
V V+ + + D+GAF+ L + GL+H+S++S +++ +++L+EG EV +V++
Sbjct: 385 VPVKVVRIA-DFGAFVELE-----EGIEGLIHISQLSTQRVENPKEVLSEGQEVTARVLE 438
Query: 246 IDREKSRITLSIKQLEEDPL 265
++ + RI LS++ E+P+
Sbjct: 439 VNPVERRIRLSLRPANEEPV 458
>gi|333907595|ref|YP_004481181.1| 30S ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
gi|333477601|gb|AEF54262.1| ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
Length = 560
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 41/235 (17%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKA-ARAYKESGFIYEGKI 107
L G+F+ N ++ + D + + +++ + W +AY+E+ ++ G I
Sbjct: 54 LTESGEFNLNIGDEVKVALDAVEDGFGETKLSREKAKRAETWSVLEKAYEENAIVH-GVI 112
Query: 108 QGFNGGGLLVRFFSLVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G GG V ++ FLP P SH L G + K+I
Sbjct: 113 NGKVKGGFTVDIANIRAFLPGSLVDVRPIRDTSH---------------LEGVDLEFKLI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++ + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVMEATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------IGDEVEVMVLDIDEERRRISLGIKQCTMNPWE 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++++ N D G D+G FI L DG + GLVH+S++SWD + +R
Sbjct: 356 EFATSFNKGDKISGAIKSITDFGVFIGL---DG--GIDGLVHLSDLSWDEAGEEAVRQ-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+GD + V+ ID E+ RI+L +KQLEEDP L
Sbjct: 410 KKGDMLETVVLSIDAERERISLGVKQLEEDPFL 442
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
I G I VKV++ + E ++ K A+ +Y V
Sbjct: 234 II------AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPENTKVTAKVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L IKQ +P E
Sbjct: 342 ISLGIKQCTMNPWEE 356
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ VSE+S + ++D L EGD V +I +DR+ ITLSIKQ
Sbjct: 478 LKVSEISRERVEDATTALKEGDSVEAAIINVDRKARTITLSIKQ 521
>gi|145634451|ref|ZP_01790161.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
gi|145641111|ref|ZP_01796692.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
gi|145268431|gb|EDK08425.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
gi|145274272|gb|EDK14137.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.4-21]
Length = 549
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|428171104|gb|EKX40024.1| ribosomal protein S1, chloroplastic [Guillardia theta CCMP2712]
Length = 404
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + +I N GG L+ F L GFLP SH+ PQ + +
Sbjct: 188 WERVRQIQAEDCTIMAEILSINRGGALINFEGLRGFLP-----GSHA---PQG----MTE 235
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--DIFVG-----RDYGAFIH 202
G++I +K ++ ++ +LV S + AV + VN+E + G + YGAF+
Sbjct: 236 DTVGTMIPLKFLEVDQAKNRLVVSNRRAVVE--TKLVNLEPGQLVTGIVRSIKPYGAFVD 293
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ ++GL+H+S++S D I D+ +L EG E++ ++ D++K R +LS K LE
Sbjct: 294 I------GGISGLLHISQISHDHISDVSKVLQEGQEIKAMILTQDKDKGRFSLSTKTLEA 347
Query: 263 DP 264
+P
Sbjct: 348 EP 349
>gi|392421531|ref|YP_006458135.1| 30S ribosomal protein S1 [Pseudomonas stutzeri CCUG 29243]
gi|431927123|ref|YP_007240157.1| 30S ribosomal protein S1P [Pseudomonas stutzeri RCH2]
gi|452749402|ref|ZP_21949166.1| 30S ribosomal protein S1 [Pseudomonas stutzeri NF13]
gi|390983719|gb|AFM33712.1| 30S ribosomal protein S1 [Pseudomonas stutzeri CCUG 29243]
gi|431825410|gb|AGA86527.1| SSU ribosomal protein S1P [Pseudomonas stutzeri RCH2]
gi|452006737|gb|EMD99005.1| 30S ribosomal protein S1 [Pseudomonas stutzeri NF13]
Length = 560
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
Length = 403
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF+ +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G EV+VKVI ID ++ RI+LSIKQ+E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSPF 273
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G V + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFVDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQEVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQIEPSPFEQATANLNEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G EV+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIK 352
>gi|452877435|ref|ZP_21954721.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa VRFPA01]
gi|452185817|gb|EME12835.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa VRFPA01]
Length = 530
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ G++ SE+S D ++D R++L EG+EV K+I ID
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISID 509
>gi|260880822|ref|ZP_05893177.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
gi|308093620|gb|EFO43315.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
Length = 507
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
>gi|421159453|ref|ZP_15618588.1| 30S ribosomal protein S1, partial [Pseudomonas aeruginosa ATCC
25324]
gi|404547165|gb|EKA56179.1| 30S ribosomal protein S1, partial [Pseudomonas aeruginosa ATCC
25324]
Length = 272
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 34/236 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
>gi|418293368|ref|ZP_12905277.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064760|gb|EHY77503.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 560
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDRISGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G I VKV++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKTNP 353
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|410663090|ref|YP_006915461.1| 30S ribosomal protein S1 [Simiduia agarivorans SA1 = DSM 21679]
gi|409025447|gb|AFU97731.1| 30S ribosomal protein S1 [Simiduia agarivorans SA1 = DSM 21679]
Length = 560
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + G I G GG V S+ FLP +
Sbjct: 85 SREKAKRAEA-WKVLEAAHNADEVVTGVINGKVKGGFTVDVASIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + E A L G + KVI+ +++ +V S E++ + +
Sbjct: 139 ---RPVRETAH-LEGKELEFKVIKLDQKRNNVVVSRRAVLEQANSAEREELLASLQEGMA 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERNRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +SA+ + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EQANSAEREELLASLQEGMAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
+ G I VKV++ + E ++ K A+ N+Y V+ +
Sbjct: 234 IV------AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWAAITNRYPEGAKVKAVVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +E+P
Sbjct: 342 ISLGIKQCQENP 353
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G + V V+ +EE +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------VGDEVEVMVLDIDEERRRISLGIKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDIL 233
+ + D G+ D+G FI L DG + GLVH+S++SW+ + +R
Sbjct: 356 AFGRQYAKNDKISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNENGEEAVRK-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L IKQL++DP
Sbjct: 410 KKGDELETVILAIDPERERISLGIKQLDQDPF 441
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
SE+S D ++D R++L EG+ V K+I +DR+ I LSIK + D
Sbjct: 481 SEISRDKVEDARNVLKEGESVEAKIINVDRKNRVINLSIKSKDVD 525
>gi|16273139|ref|NP_439376.1| 30S ribosomal protein S1 [Haemophilus influenzae Rd KW20]
gi|2500383|sp|Q48082.1|RS1_HAEIN RecName: Full=30S ribosomal protein S1
gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd KW20]
Length = 549
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLIXGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|254481764|ref|ZP_05095007.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
gi|214037893|gb|EEB78557.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
Length = 558
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK + E+ + G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRAEA-WKELESAHEAEEVVIGIINGKVKGGFTVDINTIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+++ H L G + KVI+ +++ +V S E++A+ ++
Sbjct: 140 PVRETTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVMEAANSEEREALLETLQEGMS 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+ G E+ VK++K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQEIDVKILKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP +E + P+G
Sbjct: 249 DRERNRVSLGLKQLGEDPWVEITGRY-PEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVN------LGDELEVMVLDIDEERRRISLGIKQCQQNPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S+ D G D+G FI L ++ GLVH+S++SW+ + +R+
Sbjct: 356 AFASKCQKGDKISGSIKSITDFGIFIGLE-----GNIDGLVHLSDISWNETGEEAVRN-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L +KQLE+DP
Sbjct: 410 KKGDEIETVILSIDPERERISLGVKQLEDDPF 441
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G I
Sbjct: 190 QEGMSVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVE------VGQEID 242
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
VK+++ + E ++ K + +Y SRVN + I DYG F L
Sbjct: 243 VKILKFDRERNRVSLGLKQLGEDPWVEITGRYPEGSRVNAK-ITNLTDYGCFAELE---- 297
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ I+N GDE+ V V+ ID E+ RI+L IKQ +++P
Sbjct: 298 -EGVEGLVHVSEMDW-TNKNVHPSKIVNLGDELEVMVLDIDEERRRISLGIKQCQQNP 353
>gi|145639201|ref|ZP_01794808.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
gi|145271763|gb|EDK11673.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
gi|309750777|gb|ADO80761.1| 30S ribosomal protein S1 [Haemophilus influenzae R2866]
Length = 549
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLINGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>gi|406879237|gb|EKD27894.1| RNA binding S1 protein [uncultured bacterium]
Length = 391
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP-- 140
Q+ + W K++ + KI+ N GGL+ + GF+P Q++P++ K
Sbjct: 93 QADNDRAWDILEEKKKNKENIQVKIKSANRGGLIAEYKDTEGFIPVSQLAPNNYPKVEGG 152
Query: 141 -QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR---- 195
Q I + + G ++ VKV+ ++ +KL+FSEK AV + +V+++ +G+
Sbjct: 153 NQSLILKKLQSFVGELMDVKVMSVDKNSEKLIFSEKIAVGSIKDE--DVKNLKLGKEVEA 210
Query: 196 ------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
D+G F+ + Y GL+H SE++WD D + EG +VK + I +
Sbjct: 211 LITSIVDFGLFVKINIEKKEYD--GLIHYSEITWDKQVDWKKNYKEGQ--KVKAVIISLK 266
Query: 250 KSRITLSIKQLEEDPLLETLEKVIPQG 276
R+ LSIK LE++P E E I +G
Sbjct: 267 DGRLALSIKALEKNP-WEKAEGKIKKG 292
>gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402776548|ref|YP_006630492.1| RNA degradation presenting factor [Bacillus subtilis QB928]
gi|418032549|ref|ZP_12671032.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|452915853|ref|ZP_21964479.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
gi|585942|sp|P38494.1|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog
gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative
[Bacillus subtilis subsp. subtilis str. 168]
gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus subtilis subsp. subtilis str. 168]
gi|351471412|gb|EHA31533.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481729|gb|AFQ58238.1| RNA degradation presenting factor (ribosomal protein S1 like
protein) [Bacillus subtilis QB928]
gi|407959531|dbj|BAM52771.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|407965107|dbj|BAM58346.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7003]
gi|452116201|gb|EME06597.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
Length = 382
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + WN+ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K P + EKV P
Sbjct: 256 KDTLPGPWNQIGEKVKP 272
>gi|334705228|ref|ZP_08521094.1| 30S ribosomal protein S1 [Aeromonas caviae Ae398]
Length = 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDSVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|384227744|ref|YP_005619489.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538684|gb|AEO08661.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 558
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 28/199 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A W E G I G GG V + FLP + +
Sbjct: 86 REKAKRHEA-WLILEQAHEKSETVVGIINGKVKGGFTVELNEIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+++IH L G + KVI+ +++ +V S E+D + ++V
Sbjct: 141 VRETIH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ +K++K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLL 266
RE++R++L +KQL EDP +
Sbjct: 250 RERTRVSLGLKQLGEDPWI 268
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 254
D+G FI L + GLVH+S++SW ++ + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWITPGEEAVKKYKKNDEISAVVLQVDAERERIS 430
Query: 255 LSIKQLEEDPL 265
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I++K+++ + E ++ K + W S R E GR
Sbjct: 234 IVN------VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++ D V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVVVNDIVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKINPWKE 356
>gi|409426083|ref|ZP_11260649.1| 30S ribosomal protein S1 [Pseudomonas sp. HYS]
Length = 559
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 411 KGDELDTVILSVDPERERISLGIKQLESDPFSE 443
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ + SE+S D ++D R++L EG+E+ K+I +DR+ I LSIK EE +++
Sbjct: 474 IEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQS 533
Query: 269 LEKVIP 274
L++ P
Sbjct: 534 LKEAAP 539
>gi|424033428|ref|ZP_17772842.1| ribosomal protein S1 [Vibrio cholerae HENC-01]
gi|424042692|ref|ZP_17780374.1| ribosomal protein S1 [Vibrio cholerae HENC-02]
gi|408874677|gb|EKM13845.1| ribosomal protein S1 [Vibrio cholerae HENC-01]
gi|408887534|gb|EKM26083.1| ribosomal protein S1 [Vibrio cholerae HENC-02]
Length = 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|409394007|ref|ZP_11245258.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|409396158|ref|ZP_11247179.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|419955062|ref|ZP_14471194.1| 30S ribosomal protein S1 [Pseudomonas stutzeri TS44]
gi|387968046|gb|EIK52339.1| 30S ribosomal protein S1 [Pseudomonas stutzeri TS44]
gi|409119411|gb|EKM95795.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|409121434|gb|EKM97556.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
Length = 560
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T V+ LD D SR A + E+ F E
Sbjct: 47 VIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTAH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELDTVILSVDPERERISLGIKQLEDDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPENTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|15598358|ref|NP_251852.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
gi|116051151|ref|YP_790018.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
gi|152988074|ref|YP_001347348.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA7]
gi|218890646|ref|YP_002439510.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
gi|296388354|ref|ZP_06877829.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAb1]
gi|313108474|ref|ZP_07794478.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
gi|355641007|ref|ZP_09051994.1| 30S ribosomal protein S1 [Pseudomonas sp. 2_1_26]
gi|386057876|ref|YP_005974398.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa M18]
gi|386067180|ref|YP_005982484.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCGM2.S1]
gi|392983113|ref|YP_006481700.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa DK2]
gi|416865812|ref|ZP_11915822.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 138244]
gi|416884117|ref|ZP_11922257.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 152504]
gi|418585264|ref|ZP_13149318.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P1]
gi|418591686|ref|ZP_13155579.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P2]
gi|419752515|ref|ZP_14278922.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PADK2_CF510]
gi|421152923|ref|ZP_15612491.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 14886]
gi|421166698|ref|ZP_15624932.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 700888]
gi|421173646|ref|ZP_15631385.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CI27]
gi|421179684|ref|ZP_15637263.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa E2]
gi|421517692|ref|ZP_15964366.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO579]
gi|424942532|ref|ZP_18358295.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCMG1179]
gi|451987907|ref|ZP_21936058.1| SSU ribosomal protein S1p [Pseudomonas aeruginosa 18A]
gi|81540491|sp|Q9HZ71.1|RS1_PSEAE RecName: Full=30S ribosomal protein S1
gi|9949278|gb|AAG06550.1|AE004740_3 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
gi|115586372|gb|ABJ12387.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
gi|150963232|gb|ABR85257.1| ribosomal protein S1 [Pseudomonas aeruginosa PA7]
gi|218770869|emb|CAW26634.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
gi|310880980|gb|EFQ39574.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
gi|334834249|gb|EGM13230.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 138244]
gi|334834315|gb|EGM13289.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 152504]
gi|346058978|dbj|GAA18861.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCMG1179]
gi|347304182|gb|AEO74296.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa M18]
gi|348035739|dbj|BAK91099.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCGM2.S1]
gi|354831033|gb|EHF15062.1| 30S ribosomal protein S1 [Pseudomonas sp. 2_1_26]
gi|375044684|gb|EHS37278.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P1]
gi|375049496|gb|EHS41990.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P2]
gi|384401055|gb|EIE47411.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PADK2_CF510]
gi|392318618|gb|AFM63998.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa DK2]
gi|404347174|gb|EJZ73523.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO579]
gi|404524601|gb|EKA34928.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 14886]
gi|404535463|gb|EKA45155.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CI27]
gi|404537280|gb|EKA46885.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 700888]
gi|404546695|gb|EKA55737.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa E2]
gi|451754454|emb|CCQ88581.1| SSU ribosomal protein S1p [Pseudomonas aeruginosa 18A]
gi|453043077|gb|EME90811.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA21_ST175]
Length = 559
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 272 VIPQGLE 278
+ Q +E
Sbjct: 534 LRKQEVE 540
>gi|262393793|ref|YP_003285647.1| 30S ribosomal protein S1 [Vibrio sp. Ex25]
gi|269966533|ref|ZP_06180616.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
gi|451976115|ref|ZP_21927285.1| 30S ribosomal protein S1 [Vibrio alginolyticus E0666]
gi|262337387|gb|ACY51182.1| SSU ribosomal protein S1p [Vibrio sp. Ex25]
gi|269828877|gb|EEZ83128.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
gi|451929964|gb|EMD77688.1| 30S ribosomal protein S1 [Vibrio alginolyticus E0666]
Length = 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|117617800|ref|YP_856344.1| 30S ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117559207|gb|ABK36155.1| ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDSVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|15616919|ref|NP_240132.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681673|ref|YP_002468059.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682228|ref|YP_002468612.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471362|ref|ZP_05635361.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226112|ref|YP_005617275.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384226630|ref|YP_005618381.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|414562666|ref|YP_005617857.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11387054|sp|P57395.1|RS1_BUCAI RecName: Full=30S ribosomal protein S1
gi|25294429|pir||B84966 30S ribosomal protein S1 [imported] - Buchnera sp. (strain APS)
gi|10038983|dbj|BAB13018.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621961|gb|ACL30117.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624516|gb|ACL30671.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086619|gb|ADP66700.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087202|gb|ADP67282.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087727|gb|ADP67806.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 558
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +A+++S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLILEKAHEKSETVI-GIINGKVKGGFTVELNDIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ +IH L G + KVI+ +++ +V S E+D + ++V
Sbjct: 141 VRDTIH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ +K++K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLL 266
RE++R++L +KQL EDP +
Sbjct: 250 RERTRVSLGLKQLGEDPWI 268
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 254
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 255 LSIKQLEEDPL 265
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I++K+++ + E ++ K + W S R E GR
Sbjct: 234 IVN------VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++ D V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKINPWKE 356
>gi|120553955|ref|YP_958306.1| 30S ribosomal protein S1 [Marinobacter aquaeolei VT8]
gi|387814664|ref|YP_005430151.1| 30S ribosomal protein S1 [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|120323804|gb|ABM18119.1| SSU ribosomal protein S1P [Marinobacter aquaeolei VT8]
gi|381339681|emb|CCG95728.1| 30S ribosomal subunit protein S1 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 563
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK E+ + +G I G GG V + FLP P
Sbjct: 86 REKAKRAEA-WKVLEKSFEAEEVVKGIINGKVKGGFTVDLAGIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + + ++ + ++S + + E + +++A+ + + ++ I
Sbjct: 145 AHLENKELEFKVIKLDQKRNNVVVSRRAVLEAENSE-----QREALLETLTEGLEIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEINVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP ++ ++ P+G
Sbjct: 254 RVSLGLKQLGEDPWVD-IKGRYPEG 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMILDIDEERRRISLGIKQCVANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+SS N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 DFSSNFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 410 KKGDEVETVILSVDPERERISLGIKQLESDPFAE 443
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +G ++ G V + G L M+ K P + ++ G I+VK
Sbjct: 192 GLEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVN------VGDEINVK 244
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ + E ++ K + W R R DYG F L
Sbjct: 245 VLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGSKVTARVTNLTDYGCFAELE-----EG 299
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI+L IKQ +P
Sbjct: 300 VEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMILDIDEERRRISLGIKQCVANP 353
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ ++ SE+S D ++D R++L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNVLKEGEEVEAKIISIDRKNRVINLSVKSKDVEDDKQALE 532
Query: 271 KVIPQGLE 278
V + E
Sbjct: 533 NVRSKAAE 540
>gi|375266127|ref|YP_005023570.1| 30S ribosomal protein S1 [Vibrio sp. EJY3]
gi|369841448|gb|AEX22592.1| 30S ribosomal protein S1 [Vibrio sp. EJY3]
Length = 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|345878482|ref|ZP_08830194.1| D-3-phosphoglycerate dehydrogenase [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344224513|gb|EGV50904.1| D-3-phosphoglycerate dehydrogenase [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 519
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 31/216 (14%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYE----GKIQGFNGGGLLVRFFSL 122
V LD D SR A A + E F E G+I G GG V +
Sbjct: 93 VEVALDAVEDGFGATRLSREKAKRDQAWKFLEKAFEAEDTVNGRINGKVKGGFTVELGDI 152
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182
FLP + + + + A L G + KVI+ + +V S + V +Y
Sbjct: 153 RAFLPGSLVDV--------RPVRDTAY-LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEY 203
Query: 183 SSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
S+ +E++ G+ DYGAF+ L DGL H+T +++W ++
Sbjct: 204 SAEREKLLENLQEGQELKGVVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRVKHPS 257
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
D++ GDE+ VKV+K DRE++R++L +KQ+ +DP +
Sbjct: 258 DVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWV 293
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A AR Y ES ++ GK+ G V V G + +M ++ P K +
Sbjct: 292 WVALARRYPESTRLF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV--- 347
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W++++ N D G+ D+G
Sbjct: 348 ---TLGDEVEVMVLDIDEERRRVSLGIKQCKSNPWDEFAVTHNKNDHVSGKIKSITDFGI 404
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SWD + IR+ +GDEV V+ +D E+ RI+L I
Sbjct: 405 FIGL---DG--GIDGLVHLSDISWDDAGEDAIRN-FKKGDEVETVVLSVDPERERISLGI 458
Query: 258 KQLEEDPL 265
KQL +DP
Sbjct: 459 KQLAKDPF 466
>gi|152996867|ref|YP_001341702.1| 30S ribosomal protein S1 [Marinomonas sp. MWYL1]
gi|150837791|gb|ABR71767.1| ribosomal protein S1 [Marinomonas sp. MWYL1]
Length = 560
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 41/235 (17%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKA-ARAYKESGFIYEGKI 107
L G+F+ N ++ + D + + +++ + W +AY+E+ ++ G I
Sbjct: 54 LTDSGEFNLNIGDEVKVALDAVEDGFGETKLSREKAKRAETWSVLEKAYEENAIVH-GVI 112
Query: 108 QGFNGGGLLVRFFSLVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G GG V ++ FLP P SH L G + K+I
Sbjct: 113 NGKVKGGFTVDIANIRAFLPGSLVDVRPIRDTSH---------------LEGVDLEFKLI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++ + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVMEATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------IGDEVEVMVLDIDEERRRISLGIKQCTMNPWE 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++++ N D G D+G FI L DG + GLVH+S++SWD + +R
Sbjct: 356 EFATSFNKGDKISGAIKSITDFGVFIGL---DG--GIDGLVHLSDLSWDETGEEAVRQ-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+GD + V+ ID E+ RI+L +KQLEEDP L
Sbjct: 410 KKGDMLETVVLSIDAERERISLGVKQLEEDPFL 442
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
I G I VKV++ + E ++ K A+ +Y V
Sbjct: 234 IIA------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPENTKVTAKVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L IKQ +P E
Sbjct: 342 ISLGIKQCTMNPWEE 356
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ VSE+S + I+D L EGD+V +I +DR+ ITLSIKQ
Sbjct: 478 LKVSEISRERIEDATTALKEGDKVEAAIINVDRKARTITLSIKQ 521
>gi|28898804|ref|NP_798409.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
gi|417319447|ref|ZP_12106005.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
gi|433658133|ref|YP_007275512.1| SSU ribosomal protein S1p [Vibrio parahaemolyticus BB22OP]
gi|28807023|dbj|BAC60293.1| ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
gi|328474637|gb|EGF45442.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
gi|432508821|gb|AGB10338.1| SSU ribosomal protein S1p [Vibrio parahaemolyticus BB22OP]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|365157688|ref|ZP_09353938.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
gi|363623000|gb|EHL74136.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
Length = 378
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+Q G V + G + Q+S H ++P + E G I+ VK
Sbjct: 188 GDVLEGKVQRLTDFGAFVDIGGVDGLVHISQLSHEH-VEKPSDVVKE------GEIVKVK 240
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ + + +++ S K+ + W + + V + G YGAF+ + FP
Sbjct: 241 VLSVDRDNERISLSIKETIPGPWENIAEKAPVGSVLKGTVKRLVSYGAFVEV-FPG---- 295
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++S I ++L+EG EV VKV+ ++ ++ R++LSIK+LE +P+
Sbjct: 296 VEGLVHISQISHKHIGTPHEVLSEGQEVEVKVLDVNEKEKRLSLSIKELENEPV 349
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 31/212 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W R E+G I+E +++ GGL+V + GF+P + + E +
Sbjct: 92 WDLMRKRFENGEIFEAEVKEVVKGGLVVDL-GVRGFVPASLVEDYYV---------EDFE 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DY 197
G ++ K+++ +EE +L+ S + V + + D+ G+ D+
Sbjct: 142 DYKGKTLTFKIVELDEEKNRLILSHRAVVEEEKQKAKKKLLDEIQPGDVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S + ++ D++ EG+ V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGVDGL------VHISQLSHEHVEKPSDVVKEGEIVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIPQGLEPYLKSFYKKMV 289
K+ P EK P G LK K++V
Sbjct: 256 KETIPGPWENIAEKA-PVG--SVLKGTVKRLV 284
>gi|411009665|ref|ZP_11385994.1| 30S ribosomal protein S1 [Aeromonas aquariorum AAK1]
gi|423196292|ref|ZP_17182875.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
gi|404632516|gb|EKB29121.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 51 PVGKFSTNAAKITPTTVNPILDDSSDAN-NRQSQSRSSADWKAARAYKESGFIYEGKIQG 109
+G+ N ++ I D + +R+ R A + +AY+E + G I G
Sbjct: 56 AMGELEINVGDSVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIING 114
Query: 110 FNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V + FLP P +H KE + + ++ + ++S + +
Sbjct: 115 KVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVI 174
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
E SE++++ V+ I DYGAF+ L DGL H+T ++
Sbjct: 175 ETENT-----SERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DM 223
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 224 AWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|269961758|ref|ZP_06176118.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
gi|424046845|ref|ZP_17784407.1| ribosomal protein S1 [Vibrio cholerae HENC-03]
gi|269833541|gb|EEZ87640.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
gi|408884905|gb|EKM23633.1| ribosomal protein S1 [Vibrio cholerae HENC-03]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|94971687|ref|YP_593735.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
gi|94553737|gb|ABF43661.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
Length = 609
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 27/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V FLP Q+ P +++ L G + V++I+ N++ +V
Sbjct: 170 GGLTVDIMGARAFLPGSQVD-----LRPVRNL----DALKGHELEVRIIKLNKKRGNIVV 220
Query: 173 SEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S K + + + + +N + + G DYGAF+ L DGL +H+++
Sbjct: 221 SRKQILEEEQNDKKSKTLEHLNEDAVLTGTVKNLTDYGAFVDLGGIDGL------LHITD 274
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+SW + RD++ GD+++VKV+K DR+K R++L KQL DP L+ E+
Sbjct: 275 MSWGRLTHPRDLVQVGDQIQVKVLKFDRDKQRVSLGFKQLTPDPWLDASER 325
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I VKV++ + + +++ K W S R + GR DYGAFI L
Sbjct: 290 GDQIQVKVLKFDRDKQRVSLGFKQLTPDPWLDASERYPIGARVHGRVISVTDYGAFIELE 349
Query: 205 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVHVSE++W ++ I+N GD+V V+ ++ ++ RI+L +KQLE +
Sbjct: 350 -----QGIEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLKQLETN 404
Query: 264 PLLETLEKVIPQG 276
P E+L + P G
Sbjct: 405 P-WESLHEKFPVG 416
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWN 180
G + +M+ S K P K ++ G + V+ N + +++ K W
Sbjct: 354 GLVHVSEMTWSKRMKHPSKIVN------VGDQVDAVVLNVNPQERRISLGLKQLETNPWE 407
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+ V + G+ D+GAFI + DG+ GLVHVS +SW ++ ++L
Sbjct: 408 SLHEKFPVGGVVEGKVRNLTDFGAFIEIE--DGI---DGLVHVSNLSWTKRVKHPSEVLK 462
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEED 263
+GD+V+ V+ I+ + R++L +KQL+ D
Sbjct: 463 KGDKVKAVVLAIEPDNRRLSLGVKQLQPD 491
>gi|107102692|ref|ZP_01366610.1| hypothetical protein PaerPA_01003758 [Pseudomonas aeruginosa PACS2]
Length = 542
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 29 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 88
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 89 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 139
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 140 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 199
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 200 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 252
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 253 IKARYPEG 260
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 285 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 338
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 339 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 393
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 394 KGDELETVILSVDPERERISLGIKQLEDDPF 424
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 158 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 216
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 217 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 270
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 271 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 324
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 325 ISLGIKQCKSNP 336
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 457 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 516
Query: 272 VIPQGLE 278
+ Q +E
Sbjct: 517 LRKQEVE 523
>gi|54309615|ref|YP_130635.1| 30S ribosomal protein S1 [Photobacterium profundum SS9]
gi|46914053|emb|CAG20833.1| putative ribosomal protein S1 [Photobacterium profundum SS9]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
PV +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPVEEFKNAAGELEIEVGAEVDVALDAIEDGFGETKLSREKAKRHEAWIQLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y ES + G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPESTKLS-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDRVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVTGEDAVRD-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQIEEDPF 441
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|374308458|ref|YP_005054889.1| hypothetical protein [Filifactor alocis ATCC 35896]
gi|320120527|gb|ADW16175.1| hypothetical protein HMPREF0389_01731 [Filifactor alocis ATCC
35896]
Length = 394
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMS---------PSHSCKEPQKSIHEI 147
E G + + K+ GL+V++ S+ GF+P ++ + +E Q I ++
Sbjct: 97 EVGKVIDVKVAEIGNKGLIVKYKNSIKGFIPLSHVANRFVKDEDLQEFAGQEFQAEIIDV 156
Query: 148 AKGLTGSIISVKVIQA-NEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFP 206
I+S KVI A EE K+ F + V N Y+ V DI ++YG F+ L
Sbjct: 157 EPRKRRLILSRKVIIAREEEAKRDEFVKTLEVGNVYTGVVR--DI---KNYGMFVDLG-- 209
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+TGLVH+SE+SW+ I ++ DEV+VKV+ D EK R++LSIK L EDP
Sbjct: 210 ----AMTGLVHISELSWNRRDKIEELYKVDDEVQVKVVDFDPEKGRLSLSIKALSEDP-F 264
Query: 267 ETLEK 271
ET K
Sbjct: 265 ETFRK 269
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G +Y G ++ G+ V ++ G + ++S + K I E+ K +
Sbjct: 187 EVGNVYTGVVRDIKNYGMFVDLGAMTGLVHISELSWNRRDK-----IEELYK--VDDEVQ 239
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VKV+ + E +L S K + + + V+DI ++YG F+ L
Sbjct: 240 VKVVDFDPEKGRLSLSIKALSEDPFETFRKNAKVDDIIECTVKNIKEYGVFVKLN----- 294
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
+ G +H+S +S +++ +++++GD + ++I I+ E ++ L++
Sbjct: 295 ETVDGFIHISNLSSSYVKNPNEVVSQGDVITARIISINEETQKVELTM 342
>gi|350531886|ref|ZP_08910827.1| 30S ribosomal protein S1 [Vibrio rotiferianus DAT722]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|397687381|ref|YP_006524700.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 10701]
gi|395808937|gb|AFN78342.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 10701]
Length = 561
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ PV +F ++T + V+ LD D SR A E+ F E
Sbjct: 47 VIPVEQFYNEQGELTISVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELDTVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPENTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK----QLEEDPLLE 267
+ + SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK + E+D + E
Sbjct: 474 IEATLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIKSKDVEDEKDAIKE 533
Query: 268 TLEKVIPQGLEP 279
K Q +EP
Sbjct: 534 LRSK---QDVEP 542
>gi|156975133|ref|YP_001446040.1| 30S ribosomal protein S1 [Vibrio harveyi ATCC BAA-1116]
gi|388599724|ref|ZP_10158120.1| 30S ribosomal protein S1 [Vibrio campbellii DS40M4]
gi|444427377|ref|ZP_21222761.1| 30S ribosomal protein S1 [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|156526727|gb|ABU71813.1| hypothetical protein VIBHAR_02860 [Vibrio harveyi ATCC BAA-1116]
gi|444239388|gb|ELU50956.1| 30S ribosomal protein S1 [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 556
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|384227170|ref|YP_005618920.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086046|gb|ADP66128.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
Length = 558
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +A+++S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLILEKAHEKSETVI-GIINGKVKGGFTVELNDIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ +IH L G + KVI+ +++ +V S E+D + ++V
Sbjct: 141 VRDTIH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ +K++K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLL 266
RE++R++L +KQL EDP +
Sbjct: 250 RERTRVSLGLKQLGEDPWI 268
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 254
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 255 LSIKQLEEDPL 265
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I++K+++ + E ++ K + W S R E GR
Sbjct: 234 IVN------VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++ D V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKINPWKE 356
>gi|367467422|ref|ZP_09467362.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
gi|365817505|gb|EHN12463.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
Length = 494
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 28/205 (13%)
Query: 72 DDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
DD + Q+R WK A +E+G EG + GGL++ + GFLP +
Sbjct: 88 DDEGRLKVSRKQARYERAWKRIEAAQETGEPVEGTVIEVVKGGLIIDL-GVRGFLP-ASL 145
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWN 180
+ +H +II KVI+ N + +V S ++ A+ +
Sbjct: 146 VDIRRVPNLDEYLH--------TIIECKVIELNRQRNNVVLSRRAVLEEERKEQRQAILD 197
Query: 181 KYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEV 239
V VE I D+GAF+ L DGL +H+SE+SW + +++ GD V
Sbjct: 198 VLQPGVIVEGQISNIVDFGAFVDLNGIDGL------IHISELSWTHVNHPTEVVAIGDTV 251
Query: 240 RVKVIKIDREKSRITLSIKQLEEDP 264
+VKV+ IDR++ RI+L +KQ +EDP
Sbjct: 252 QVKVLDIDRDRQRISLGLKQTQEDP 276
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I EG+I G V + G + ++S +H P + + G +
Sbjct: 200 QPGVIVEGQISNIVDFGAFVDLNGIDGLIHISELSWTH-VNHPTEVV------AIGDTVQ 252
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ K + W + NV D G +GAF+ + +
Sbjct: 253 VKVLDIDRDRQRISLGLKQTQEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEI-----M 307
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ GLVH+SE++ ++ R++++ GD+V+VK+++ID ++ R++LS+K++E
Sbjct: 308 EGVEGLVHISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVKRVE 359
>gi|384246482|gb|EIE19972.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 386
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 90 WKAARAYK----ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIH 145
W+ AR K E I+ + N GGLL SL FLP+ M+ + ++ SI
Sbjct: 150 WERARQMKHACEEDKEIFTVVVTDVNSGGLLATMESLPAFLPYSLMAKNR--EDSWMSIE 207
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAF 200
++ K I V + + +++K+V + + A+ N+ ++ V + G YG F
Sbjct: 208 DVKKKYLNKTIEVGIKDVSPQLRKVVLNMQQAITNRLLKKLTVGSLVWGTVRRVEPYGVF 267
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L +GL+H+S +S I+ + D+ + GD VR +I +D SRI+LS +L
Sbjct: 268 VGLEDT----RFSGLLHISSISRAHIESVEDMFSVGDRVRAMLIGMDEGFSRISLSTSEL 323
Query: 261 EEDP--LLETLEKV 272
E P +L + EKV
Sbjct: 324 EAAPGDMLFSKEKV 337
>gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
Length = 439
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 244 WDKVKVLEKEGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGEN--------HE--- 292
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + V + G + YG F+ L
Sbjct: 293 SLVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEVGQLVEGHVVAVKPYGFFVDL- 351
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R++ + GD V+ + ++D + RI L+ LE P
Sbjct: 352 -----GGISGLLHQSVITGGSLRSLREVFDHGDLVKALITELDPGRGRIALNTAMLEGQP 406
Query: 265 --LLETLEKVIPQGLE 278
LL +KV+ + ++
Sbjct: 407 GELLVEKDKVMAEAVD 422
>gi|104780673|ref|YP_607171.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
gi|95109660|emb|CAK14361.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
Length = 558
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFINEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDKITGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|262274461|ref|ZP_06052272.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
gi|262221024|gb|EEY72338.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY+E+ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWIQLEKAYEEAETVI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L G + KVI+ +++ +V S E+D + + V
Sbjct: 141 VRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSVERDELLASLQEGMEV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
R+++R++L +KQL EDP
Sbjct: 250 RDRTRVSLGLKQLGEDP 266
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIANRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W ++ N D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQLFAEMQNKGDRVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLQVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQMEEDPF 441
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + + ++ K + W ++R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRDRTRVSLGLKQLGEDPWVAIANRYPEGHKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|254785518|ref|YP_003072947.1| 30S ribosomal protein S1 [Teredinibacter turnerae T7901]
gi|237685745|gb|ACR13009.1| ribosomal protein S1 [Teredinibacter turnerae T7901]
Length = 560
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 29/197 (14%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + WK A ES + G I G GG V + FLP + +
Sbjct: 86 REKAKRAESWKVLEAAHESEEVITGVINGKVKGGFTVDVAGIRAFLPGSLVD----VRPV 141
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----- 195
+++ H L G + KVI+ +++ +V S + AV + ++ E + +
Sbjct: 142 RETTH-----LEGKELEFKVIKLDQKRNNVVVSRR-AVMEQTNTEEREELLATLQEGQAV 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIEVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 250 RERNRVSLGLKQLGEDP 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G + V ++ +EE +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVMILDIDEERRRISLGIKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+S++ D G+ D+G FI L + GLVH+S++SW+ + +R
Sbjct: 356 AFSNQYAKGDKITGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNEAGEEAVRK-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ ID E+ RI+L IKQL+EDP
Sbjct: 410 KKGDELETVVLAIDPERERISLGIKQLDEDPF 441
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A + G +G ++ G V + G L M+ K P + + G
Sbjct: 187 ATLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIV------AVGD 239
Query: 155 IISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLRFP 206
I VKV++ + E ++ K A+ +Y V+ DYG F +
Sbjct: 240 EIEVKVLKFDRERNRVSLGLKQLGEDPWAAITQRYPEGAKVKATITNLTDYGCFAEIE-- 297
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ +E+P
Sbjct: 298 ---EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMILDIDEERRRISLGIKQCQENP 353
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ G + SE+S D ++D R+ L EGD+V K+ +DR+ I LSIK + D
Sbjct: 474 VEGTLKASEISRDKVEDARNALKEGDDVEAKITNVDRKNRTIILSIKAKDSD 525
>gi|390956265|ref|YP_006420022.1| 30S ribosomal protein S1P [Terriglobus roseus DSM 18391]
gi|390411183|gb|AFL86687.1| SSU ribosomal protein S1P [Terriglobus roseus DSM 18391]
Length = 629
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 18/131 (13%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR--VNVEDIFVG----------RDYGAF 200
G+ + V+VI+ N++ +V S K+ + + ++R V +E + G DYGAF
Sbjct: 216 GTQLDVRVIKLNKKRGNVVISRKEILEEEQNARKSVTLETLEEGAVLTGVVKNLTDYGAF 275
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DGL H+T ++SW + RD++ GDE++VKV+K D++K R++L KQL
Sbjct: 276 VELGGLDGLLHIT------DMSWGRLTHPRDLVQVGDEIQVKVLKFDKDKHRVSLGFKQL 329
Query: 261 EEDPLLETLEK 271
DP L+ +E+
Sbjct: 330 TPDPWLDAIER 340
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + G ++ G V L G L MS P+ + G I
Sbjct: 257 EEGAVLTGVVKNLTDYGAFVELGGLDGLLHITDMSWGR-LTHPRDLVQ------VGDEIQ 309
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ +++ ++ K W R + GR DYGAF+ L
Sbjct: 310 VKVLKFDKDKHRVSLGFKQLTPDPWLDAIERYPIGAQVKGRVLSVTDYGAFVELE----- 364
Query: 210 YHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVHVSE++W ++ ++ GDEV ++ ++ RI+L +KQL+++P E
Sbjct: 365 QGIEGLVHVSEMTWSKRMKHPSKMVKPGDEVDTIILAVNPNDRRISLGMKQLQDNP-WEQ 423
Query: 269 LEKVIPQG 276
LE P G
Sbjct: 424 LENKYPIG 431
>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 343
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHE 146
A W R + + ++ N GGLLV L GF+P SH + + P +
Sbjct: 115 AAWNRCREMQAADEAVSAEVLSVNRGGLLVEVEHLRGFVP-----QSHIAIRTPNR---- 165
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
+ L G + VK ++ +E+ +LV S + A + V D+ G + YGAF+
Sbjct: 166 --EDLIGQKVPVKFLEVDEDKNRLVMSNRLATDVVSGEGLGVGDVCKGIVQAVKPYGAFV 223
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ ++GL+H+S++S D I + ++L+ GDE++V ++ D E+SR++LS K+LE
Sbjct: 224 DV------GGVSGLLHISQISHDRIVAVENVLSPGDELKVLILSKDAERSRLSLSTKKLE 277
Query: 262 EDP 264
P
Sbjct: 278 PSP 280
>gi|119946634|ref|YP_944314.1| 30S ribosomal protein S1 [Psychromonas ingrahamii 37]
gi|119865238|gb|ABM04715.1| SSU ribosomal protein S1P [Psychromonas ingrahamii 37]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWIQLEKAYEDQETVI-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+ + H L I KVI+ +++ +V S + + + S + +E++ G+
Sbjct: 141 VRDTAH-----LENKDIEFKVIKLDQKRNNVVVSRRAVIETENSVERDELLENLQEGQEI 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + K P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G GK+ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GTRLTGKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G V V+ +EE +++ K W ++SS + G+ D+G
Sbjct: 324 ----LGDAAEVMVLDIDEERRRISLGLKQCKANPWEEFSSTHDKGQKVSGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREKSRITLSI 257
FI L DG ++ GLVH+S++SW+ + + +L+ +GDE+ V+++D E+ RI+L I
Sbjct: 380 FIGL---DG--NIDGLVHLSDISWEA-EGEKAVLDYKKGDEIEAVVLQVDPERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+ DP
Sbjct: 434 KQISIDPF 441
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGQEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R G+ DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGKVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W ++I ++N GD V V+ ID E+ RI+L +KQ + +P E
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDAAEVMVLDIDEERRRISLGLKQCKANPWEE 356
>gi|416217715|ref|ZP_11624448.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
gi|416235529|ref|ZP_11630205.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
gi|416240484|ref|ZP_11632455.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
gi|416246645|ref|ZP_11635103.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
gi|416254830|ref|ZP_11638932.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
gi|326560464|gb|EGE10846.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
gi|326564205|gb|EGE14441.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
gi|326565804|gb|EGE15966.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
gi|326570457|gb|EGE20497.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
gi|326577136|gb|EGE27030.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
Length = 557
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 28/208 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ W+A E+ I +G I GG V S+ FLP + +
Sbjct: 87 REKAKREESWRALEQLHENDEIVKGVISSKVKGGFTVEIGSVRAFLPGSLVD----VRPV 142
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
+++ H L G + KVI+ +++ +V S E+D + K + VE
Sbjct: 143 RETTH-----LEGKELEFKVIKIDKQRNNIVVSRRAVMEAENSAERDELLAKLEEGMEVE 197
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
I DYGAF+ L DGL H+T +++W I+ + + G +++VKV+K DR
Sbjct: 198 GIVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEAVEVGQDLKVKVLKFDR 251
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQG 276
E++R++L +KQL DP E +E+ P G
Sbjct: 252 ERNRVSLGLKQLGADPWTE-VEQTYPVG 278
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L + GLVH+S++SW + IR+ ++GD V V+ +D E +RI
Sbjct: 377 DFGLFIGLEGG-----IDGLVHLSDISWTESGEEAIRN-YSKGDTVEAVVLSVDAEANRI 430
Query: 254 TLSIKQLEEDPLLETL 269
+L IKQL DP E L
Sbjct: 431 SLGIKQLNSDPFNEYL 446
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ G + V++++ + +D +L+ GDEV K++ +DR+ I+LSIK +E
Sbjct: 474 EVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIKAKDE 525
>gi|345863468|ref|ZP_08815679.1| 30S ribosomal protein S1 [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125546|gb|EGW55415.1| 30S ribosomal protein S1 [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 558
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A WK E+ G+I G GG V + FLP +
Sbjct: 85 SREKAKRDQA-WKFLEKAFEAEDTVNGRINGKVKGGFTVELGDIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR- 195
+ + + A L G + KVI+ + +V S + V +YS+ +E++ G+
Sbjct: 139 ---RPVRDTAY-LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D++ GDE+ VKV+K
Sbjct: 195 LKGVVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRVKHPSDVVQIGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQ+ +DP
Sbjct: 249 DRERNRVSLGLKQMGDDP 266
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A AR Y ES ++ GK+ G V V G + +M ++ P K +
Sbjct: 267 WVALARRYPESTRLF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV--- 322
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W++++ N D G+ D+G
Sbjct: 323 ---TLGDEVEVMVLDIDEERRRVSLGIKQCKSNPWDEFAVTHNKNDHVSGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SWD + IR+ +GDEV V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWDDAGEDAIRN-FKKGDEVETVVLSVDPERERISLGI 433
Query: 258 KQLEEDPL 265
KQL +DP
Sbjct: 434 KQLAKDPF 441
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SE+S D ++D R +L EG E+ K I +DR+ I+LSI
Sbjct: 465 GAVIDL--ADGV---EGYLRASELSRDRVEDARTLLKEGQEIEAKFIGVDRKNRTISLSI 519
>gi|145298754|ref|YP_001141595.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418360897|ref|ZP_12961560.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|142851526|gb|ABO89847.1| ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356687880|gb|EHI52454.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFF 120
TV+ LD D SR A A +AY+E + G I G GG V
Sbjct: 67 TVDVALDSIEDGFGETKLSREKAKRHEAWLQLEKAYEEQATVI-GIINGKVKGGFTVELN 125
Query: 121 SLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173
+ FLP P +H KE + + ++ + ++S + + E S
Sbjct: 126 GIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIETENT-----S 180
Query: 174 EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
E++++ V+ I DYGAF+ L DGL H+T +++W ++ +I
Sbjct: 181 ERESLLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEI 234
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 235 VNVGDEIAVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 254 TLSIKQLEEDPL 265
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
>gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
Length = 582
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 34/259 (13%)
Query: 31 SSLVCVNP---LIIERICQRNLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQS 84
++V VNP ++ + P+ +F+ + T V+ + + + + + S
Sbjct: 53 GTIVQVNPDSVVVDVGYKSEGVIPLAEFAVDGQPATLEVGDKVDVLFERAENESGLIGLS 112
Query: 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
+ AD + E G + EG+I GGL V + FLP Q+ P +++
Sbjct: 113 KEKADRQKVWNALEEGAVVEGRIVSRIKGGLSVDI-GVNAFLPGSQVDL-----RPVRNL 166
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-----------VEDIFV 193
+ L G K+I+ N+ +V S + + + S+ + VE +
Sbjct: 167 DK----LIGETFEFKIIKLNKRRGNIVLSRRVLLETERESQRSDTLKTLEEGQIVEGVVK 222
Query: 194 G-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAFI L DGL H+T ++SW + DIL GD + VKV+K DREK R
Sbjct: 223 NLTDYGAFIDLGGIDGLLHIT------DMSWGRVSHPSDILAVGDSINVKVLKFDREKER 276
Query: 253 ITLSIKQLEEDPLLETLEK 271
++L +KQ+ DP L EK
Sbjct: 277 VSLGLKQITPDPWLSVAEK 295
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +MS + K P K + G + V+ + E +++ K W
Sbjct: 324 GLIHVSEMSWTKRIKHPNKLLS------IGDEVETVVLAMDTENRRISLGLKQVEPNPWE 377
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+ I G+ D+G F+ + + GLVH+S++SW I+ ++
Sbjct: 378 VIGEKFPAGTIIEGQVKNITDFGIFVGVD-----EGIDGLVHISDLSWTKRIKHPSELYK 432
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
+GD V+ V+ IDR+ R +L +KQL +DP ++IP+ P
Sbjct: 433 KGDLVKAVVLNIDRDNERFSLGVKQLTQDPW-----QIIPEQYAP 472
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ +G I EG+++ G+ V + G + +S + K P E+
Sbjct: 376 WEVIGEKFPAGTIIEGQVKNITDFGIFVGVDEGIDGLVHISDLSWTKRIKHPS----ELY 431
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
K G ++ V+ + + ++ K W + I G+ ++G F
Sbjct: 432 K--KGDLVKAVVLNIDRDNERFSLGVKQLTQDPWQIIPEQYAPGTIIRGKVTSVTEFGIF 489
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + + GL+HVSE+S D + +D GDE+ V+ +D + +I LSIK L
Sbjct: 490 LEVE-----EGVEGLIHVSEISKDKVDSPKDFAKVGDELEAVVLHVDTNEHKIALSIKHL 544
>gi|398813282|ref|ZP_10571981.1| ribosomal protein S1 [Brevibacillus sp. BC25]
gi|398038943|gb|EJL32089.1| ribosomal protein S1 [Brevibacillus sp. BC25]
Length = 390
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 28/187 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W ++G I E ++ GGL+V + GF+P M H ++
Sbjct: 95 WSDLEQKMQAGEIIEATVKEVVKGGLVVDV-GVRGFIP-ASMVERHFVED--------FS 144
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWN--KYSSRVNVEDIFVGR----------DY 197
G +++KV++ ++E K++ S K + + K + ++ I VG+ D+
Sbjct: 145 DYKGKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDF 204
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
G F+ + DGL VHVSE++W+ + D++ EGD+V+VKV+KIDRE RI LSI
Sbjct: 205 GVFVDIGGVDGL------VHVSELAWNRVDKPSDVVKEGDKVQVKVLKIDRENERIGLSI 258
Query: 258 KQLEEDP 264
K + P
Sbjct: 259 KDTQAGP 265
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG +Q G+ V + G + +++ + K P + E G + VK
Sbjct: 191 GQVLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDK-PSDVVKE------GDKVQVK 243
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ + E +++ S KD W + I G +GAFI L P
Sbjct: 244 VLKIDRENERIGLSIKDTQAGPWANVAEDFKAGSILNGTVKRLVSFGAFIELA-P----G 298
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+S+++ + ++L EG EV+VKV+ + ++ RI+LSI+ +EED
Sbjct: 299 IEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQEQRISLSIRAVEED 350
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK----DAVW 179
G +P ++SP H K + ++ G VKVI+ N+E ++LV S+K ++ W
Sbjct: 43 GLIPISELSPLHVEK-----VSDVVA--VGDTFEVKVIKLNDEKEELVVSKKAVAMESSW 95
Query: 180 NKYSSRVNVEDIFVGRDYGAFIHLRFPDGL---YHLTGLVHVSEVSWDLIQDIRDILNEG 236
+ ++ +I A + GL + G + S V ++D D +G
Sbjct: 96 SDLEQKMQAGEII-----EATVKEVVKGGLVVDVGVRGFIPASMVERHFVEDFSDY--KG 148
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ +KV+++D+EK+++ LS K + ED +
Sbjct: 149 KTLALKVVEMDKEKNKVILSHKAVLEDEV 177
>gi|237749145|ref|ZP_04579625.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
gi|229380507|gb|EEO30598.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
Length = 568
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 52 VGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFN 111
VG+ N + + + D + +++ A W A ESG I G + G
Sbjct: 67 VGELEVNVGDYVSVAIESLENGYGDTILSRDKAKRLASWLALEKAMESGEIVTGTVNGKV 126
Query: 112 GGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQ 162
GGL V R F SLV P +P + K + + ++ + ++S + V++
Sbjct: 127 KGGLTVLTNGIRAFLPGSLVDTRPVKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRAVVE 185
Query: 163 AN--EEMKKLVFSEKDA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVS 219
A+ EE +KL+ + K+ + N + DYGAFI L DGL H+T L
Sbjct: 186 ASMGEERQKLMETLKEGTIVNGVVKNIT--------DYGAFIDLGGIDGLLHITDL---- 233
Query: 220 EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
+W ++ ++L G E+ KV+K D+EK+R++L +KQL +DP L + PQG
Sbjct: 234 --AWRRVRHPSEMLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWT-GLSRRYPQGTRL 290
Query: 280 YLK 282
+ K
Sbjct: 291 FGK 293
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I G ++ G + + G L ++ + P + + G I+ K
Sbjct: 202 GTIVNGVVKNITDYGAFIDLGGIDGLLHITDLA-WRRVRHPSEML------TVGQEITAK 254
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 255 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVE-----QG 309
Query: 212 LTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ GLVHVSE+ W +++ ++ GDEV V V++ID E+ RI+L +KQ + +P E
Sbjct: 310 IEGLVHVSEMDW-TNKNVAPNKVVKLGDEVEVMVLEIDEERRRISLGMKQCKANPWEEFA 368
Query: 270 E 270
E
Sbjct: 369 E 369
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 281 SRRYPQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVK------ 333
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +EE +++ K W +++ D G D+G FI L
Sbjct: 334 LGDEVEVMVLEIDEERRRISLGMKQCKANPWEEFAETHKKGDKVNGAIKSITDFGVFIGL 393
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + + +GDE+ V+ ID E+ R++L +KQLE
Sbjct: 394 --PG---NIDGLVHLSDLSWTEAGETAVHNFKKGDELEAVVLAIDVERERVSLGVKQLEG 448
Query: 263 DPL 265
DP
Sbjct: 449 DPF 451
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + G + SE+S D ++D L D+V V +I IDR+ + LSI
Sbjct: 475 GAVIQLN-----DEVEGYLRASEISRDRVEDAGTQLKVDDKVEVMIINIDRKSRTLQLSI 529
Query: 258 KQLEEDPLLETLEKV 272
K ++ E ++K+
Sbjct: 530 KAKDQQETQEAMQKI 544
>gi|406915508|gb|EKD54583.1| hypothetical protein ACD_60C00067G0001 [uncultured bacterium]
Length = 573
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY E I G IQG GG V + FLP + +
Sbjct: 85 SRERAKRLEAWIDLEKAY-EKKEIVRGVIQGRVKGGFTVEVNKIRAFLP-GSLVDVKPIR 142
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVW--NKYSSRVNVEDIFVG-- 194
+P+ L G +VI+ + + +V S + A+ N +E + G
Sbjct: 143 DPE--------ALEGKEFDFRVIKIDAKRNNIVVSRRSAMESENNVEREALLEKLHEGDE 194
Query: 195 --------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAFI L DGL H+T ++SW I+ +IL GDE++VK++K
Sbjct: 195 VKGSVKNLTDYGAFIDLGGIDGLLHIT------DMSWKRIKHPNEILAIGDEIKVKILKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+ +R++L +KQL EDP
Sbjct: 249 DRDNARVSLGLKQLGEDP 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G +GK+ G V + + G + +M ++ P K +H G + V
Sbjct: 277 GKRLQGKVTNITDYGCFVEIEAGIEGLVHVSEMDWTNKNVNPNKVVH------LGQEVEV 330
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
V+ + E +++ K W ++++ D G+ D+G FI L DG
Sbjct: 331 IVLDIDGERRRISLGLKQCTVNPWEEFATHHQKGDKISGKIKSITDFGIFIGL---DG-- 385
Query: 211 HLTGLVHVSEVSWD---LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL+H+S++SW+ + IR +GDE+ ++ ID E+ RI+L +KQL EDP+
Sbjct: 386 GIDGLIHLSDISWNEGSAEEAIRK-FQKGDELETIILTIDAERERISLGLKQLAEDPMTN 444
Query: 268 TL 269
L
Sbjct: 445 YL 446
>gi|258621309|ref|ZP_05716343.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
gi|258625367|ref|ZP_05720264.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
gi|262171091|ref|ZP_06038769.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
gi|424807147|ref|ZP_18232555.1| 30S ribosomal protein S1 [Vibrio mimicus SX-4]
gi|449144442|ref|ZP_21775257.1| 30S ribosomal protein S1 [Vibrio mimicus CAIM 602]
gi|258582358|gb|EEW07210.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
gi|258586697|gb|EEW11412.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
gi|261892167|gb|EEY38153.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
gi|342325089|gb|EGU20869.1| 30S ribosomal protein S1 [Vibrio mimicus SX-4]
gi|449079943|gb|EMB50862.1| 30S ribosomal protein S1 [Vibrio mimicus CAIM 602]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|237749845|ref|ZP_04580325.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
gi|229374595|gb|EEO24986.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
Length = 562
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 27/199 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R + ++A + A+ +SG YEG ++ GL V S+ G + F ++S
Sbjct: 183 RYLDTHTAAQKENAKKILDSGLAYEGVVKNVTKFGLFVEIGSVDGLVHFTEISHRGPV-N 241
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKL------VFSE-----KDAVWNKYSSRVNV 188
P+K G + VK ++ NEE +L +F + KD + Y RV V
Sbjct: 242 PEKHYK------VGDKVQVKPLEYNEEKNRLSLSIRALFDDPWKEIKDEIKVGYVIRVTV 295
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKID 247
+I DYGAF+ L + G +H+SE+SWD I+ D L G+E+ V+VI+ID
Sbjct: 296 SNI---EDYGAFVDLG-----NDVEGFLHISEMSWDKNIKQPSDCLKVGEEINVEVIEID 347
Query: 248 REKSRITLSIKQLEEDPLL 266
+ R+ +S+K+L++ P +
Sbjct: 348 PDNRRLRVSLKKLQDKPFV 366
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
WK + + G++ + G V + V GFL +MS + K+P +
Sbjct: 278 WKEIKDEIKVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISEMSWDKNIKQPSDCLK--- 334
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAF 200
G I+V+VI+ + + ++L S K D + +++ V D+ G+ ++GAF
Sbjct: 335 ---VGEEINVEVIEIDPDNRRLRVSLKKLQDKPFVRFTKEHKVGDVIKGKVATITNFGAF 391
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
++L DGL +H + WD + D GD + VK+ KID +I+L+ + L
Sbjct: 392 VNLGAVDGL------LHNEDAFWDKSKKCADEFKVGDSIEVKIDKIDTANEKISLNRRYL 445
Query: 261 EEDP 264
E P
Sbjct: 446 VESP 449
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 96 YKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSI 155
YK+ + EG I+G N GG +V + V + S K+ K + K + I
Sbjct: 113 YKDK--VVEGVIRGKNKGGYIVESANGVEYFMPRHYSALSRDKDDSKVV---GKPIKACI 167
Query: 156 ISVK------VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
+ ++ VI + ++K+ S + E + +G F+ + DG
Sbjct: 168 VDIRPNGNSIVISRKRYLDTHTAAQKENAKKILDSGLAYEGVVKNVTKFGLFVEIGSVDG 227
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H T + H V+ + + GD+V+VK ++ + EK+R++LSI+ L +DP E
Sbjct: 228 LVHFTEISHRGPVNPEKHYKV------GDKVQVKPLEYNEEKNRLSLSIRALFDDPWKEI 281
Query: 269 LEKV 272
+++
Sbjct: 282 KDEI 285
>gi|237746992|ref|ZP_04577472.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
gi|229378343|gb|EEO28434.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
Length = 569
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 52 VGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFN 111
VG+ N + + + D + +++ A W A ESG I G + G
Sbjct: 67 VGELEVNVGDYVSVAIESLENGYGDTILSRDKAKRLASWLALEKAMESGEIVTGTVNGKV 126
Query: 112 GGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQ 162
GGL V R F SLV P +P + K + + ++ + ++S + V++
Sbjct: 127 KGGLTVLTNGIRAFLPGSLVDTRPVKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRAVVE 185
Query: 163 AN--EEMKKLVFSEKDA-VWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVS 219
A+ EE +KL+ + K+ + N + DYGAFI L DGL H+T L
Sbjct: 186 ASMGEERQKLMETLKEGTIVNGVVKNIT--------DYGAFIDLGGIDGLLHITDL---- 233
Query: 220 EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
+W ++ ++L G E+ KV+K D+EK+R++L +KQL +DP L + PQG
Sbjct: 234 --AWRRVRHPSEMLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWT-GLSRRYPQGTRL 290
Query: 280 YLK 282
+ K
Sbjct: 291 FGK 293
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I G ++ G + + G L ++ + P + + G I+ K
Sbjct: 202 GTIVNGVVKNITDYGAFIDLGGIDGLLHITDLA-WRRVRHPSEML------TVGQEITAK 254
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 255 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVE-----QG 309
Query: 212 LTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ GLVHVSE+ W +++ ++ GDEV V V++ID E+ RI+L +KQ + +P E
Sbjct: 310 IEGLVHVSEMDW-TNKNVAPNKVVKLGDEVEVMVLEIDEERRRISLGMKQCKPNPWEEFA 368
Query: 270 E 270
E
Sbjct: 369 E 369
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 281 SRRYPQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVK------ 333
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +EE +++ K W +++ D G D+G FI L
Sbjct: 334 LGDEVEVMVLEIDEERRRISLGMKQCKPNPWEEFAETHKKGDKVSGAIKSITDFGVFIGL 393
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + + +GDE+ V+ ID E+ R++L +KQLE
Sbjct: 394 --PG---NIDGLVHLSDLSWTEPGETAVHNFKKGDELEAVVLAIDVERERVSLGVKQLEG 448
Query: 263 DPL 265
DP
Sbjct: 449 DPF 451
>gi|261210556|ref|ZP_05924849.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
gi|260840341|gb|EEX66912.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE + T+ K
Sbjct: 520 KAKDEAEEQEAMATINK 536
>gi|406956438|gb|EKD84534.1| hypothetical protein ACD_38C00205G0002 [uncultured bacterium]
Length = 369
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ R DW + + +GK+ N GGL+V GFLP Q+ K
Sbjct: 107 RGRRPMDWSKFVSARNQKSKLQGKVIEVNKGGLIVEAAGTRGFLPNSQVGFELLSKS--- 163
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIH 202
E + L G +++ VI+ ++ KL+FS++ V ++ +++ + + I
Sbjct: 164 --GEGMENLIGQDLTITVIEVDQNNNKLIFSQRGQVSDEVKKKLS--EFKKDQKMTGKIV 219
Query: 203 LRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
P GL GLV +S+VSWD + D+ GD V V ++ +D E R+ LSIK
Sbjct: 220 AVLPFGLVVDVSGAEGLVFISDVSWDKVDDLSLDYARGDSVEVLILGLDEELGRLNLSIK 279
Query: 259 QLEEDPLLETLEKVIP 274
QL+EDP + + P
Sbjct: 280 QLKEDPFTKAAKSYTP 295
>gi|121591424|ref|ZP_01678703.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
gi|121546719|gb|EAX56895.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
Length = 542
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 34 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 93
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 94 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 143
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 144 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 203
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 204 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 256
Query: 270 EKVIPQG 276
K P+G
Sbjct: 257 AKRYPEG 263
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 253 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 309
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 310 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 365
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 366 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 419
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 420 KQMENDPF 427
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 451 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 505
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 506 KAKDEAEEQEVMATLNK 522
>gi|422909685|ref|ZP_16944328.1| ribosomal protein S1 [Vibrio cholerae HE-09]
gi|424659624|ref|ZP_18096873.1| ribosomal protein S1 [Vibrio cholerae HE-16]
gi|341634445|gb|EGS59203.1| ribosomal protein S1 [Vibrio cholerae HE-09]
gi|408051980|gb|EKG87046.1| ribosomal protein S1 [Vibrio cholerae HE-16]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + I + A L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|262404268|ref|ZP_06080823.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
gi|262349300|gb|EEY98438.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + I + A L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GAAIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|15641917|ref|NP_231549.1| 30S ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|147673739|ref|YP_001217448.1| 30S ribosomal protein S1 [Vibrio cholerae O395]
gi|227082045|ref|YP_002810596.1| 30S ribosomal protein S1 [Vibrio cholerae M66-2]
gi|227118363|ref|YP_002820259.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|229507989|ref|ZP_04397494.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
gi|229515301|ref|ZP_04404761.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
gi|229518911|ref|ZP_04408354.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
gi|229521837|ref|ZP_04411254.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
gi|229523935|ref|ZP_04413340.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
gi|229529059|ref|ZP_04418449.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
gi|229607535|ref|YP_002878183.1| 30S ribosomal protein S1 [Vibrio cholerae MJ-1236]
gi|254286724|ref|ZP_04961678.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
gi|254849003|ref|ZP_05238353.1| ribosomal protein S1 [Vibrio cholerae MO10]
gi|255745326|ref|ZP_05419275.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
gi|360035798|ref|YP_004937561.1| 30S ribosomal protein S1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|379741748|ref|YP_005333717.1| 30S ribosomal protein S1 [Vibrio cholerae IEC224]
gi|384424906|ref|YP_005634264.1| 30S ribosomal protein S1 [Vibrio cholerae LMA3984-4]
gi|417813960|ref|ZP_12460613.1| ribosomal protein S1 [Vibrio cholerae HC-49A2]
gi|417817697|ref|ZP_12464326.1| ribosomal protein S1 [Vibrio cholerae HCUF01]
gi|417821268|ref|ZP_12467882.1| ribosomal protein S1 [Vibrio cholerae HE39]
gi|417825136|ref|ZP_12471724.1| ribosomal protein S1 [Vibrio cholerae HE48]
gi|418334935|ref|ZP_12943849.1| ribosomal protein S1 [Vibrio cholerae HC-06A1]
gi|418338552|ref|ZP_12947446.1| ribosomal protein S1 [Vibrio cholerae HC-23A1]
gi|418346470|ref|ZP_12951232.1| ribosomal protein S1 [Vibrio cholerae HC-28A1]
gi|418350232|ref|ZP_12954963.1| ribosomal protein S1 [Vibrio cholerae HC-43A1]
gi|418355439|ref|ZP_12958158.1| ribosomal protein S1 [Vibrio cholerae HC-61A1]
gi|419826894|ref|ZP_14350393.1| ribosomal protein S1 [Vibrio cholerae CP1033(6)]
gi|419830390|ref|ZP_14353875.1| ribosomal protein S1 [Vibrio cholerae HC-1A2]
gi|419834069|ref|ZP_14357524.1| ribosomal protein S1 [Vibrio cholerae HC-61A2]
gi|419837645|ref|ZP_14361083.1| ribosomal protein S1 [Vibrio cholerae HC-46B1]
gi|421318314|ref|ZP_15768882.1| ribosomal protein S1 [Vibrio cholerae CP1032(5)]
gi|421321687|ref|ZP_15772240.1| ribosomal protein S1 [Vibrio cholerae CP1038(11)]
gi|421325486|ref|ZP_15776010.1| ribosomal protein S1 [Vibrio cholerae CP1041(14)]
gi|421329148|ref|ZP_15779658.1| ribosomal protein S1 [Vibrio cholerae CP1042(15)]
gi|421333055|ref|ZP_15783532.1| ribosomal protein S1 [Vibrio cholerae CP1046(19)]
gi|421336644|ref|ZP_15787105.1| ribosomal protein S1 [Vibrio cholerae CP1048(21)]
gi|421340075|ref|ZP_15790507.1| ribosomal protein S1 [Vibrio cholerae HC-20A2]
gi|421344595|ref|ZP_15794998.1| ribosomal protein S1 [Vibrio cholerae HC-43B1]
gi|421348311|ref|ZP_15798688.1| ribosomal protein S1 [Vibrio cholerae HC-46A1]
gi|421351656|ref|ZP_15802021.1| ribosomal protein S1 [Vibrio cholerae HE-25]
gi|421354589|ref|ZP_15804921.1| ribosomal protein S1 [Vibrio cholerae HE-45]
gi|422307866|ref|ZP_16395020.1| ribosomal protein S1 [Vibrio cholerae CP1035(8)]
gi|422897022|ref|ZP_16934472.1| ribosomal protein S1 [Vibrio cholerae HC-40A1]
gi|422903224|ref|ZP_16938200.1| ribosomal protein S1 [Vibrio cholerae HC-48A1]
gi|422907108|ref|ZP_16941912.1| ribosomal protein S1 [Vibrio cholerae HC-70A1]
gi|422913955|ref|ZP_16948461.1| ribosomal protein S1 [Vibrio cholerae HFU-02]
gi|422917771|ref|ZP_16952089.1| ribosomal protein S1 [Vibrio cholerae HC-02A1]
gi|422923220|ref|ZP_16956378.1| ribosomal protein S1 [Vibrio cholerae BJG-01]
gi|422926161|ref|ZP_16959175.1| ribosomal protein S1 [Vibrio cholerae HC-38A1]
gi|423145480|ref|ZP_17133074.1| ribosomal protein S1 [Vibrio cholerae HC-19A1]
gi|423150156|ref|ZP_17137470.1| ribosomal protein S1 [Vibrio cholerae HC-21A1]
gi|423153976|ref|ZP_17141157.1| ribosomal protein S1 [Vibrio cholerae HC-22A1]
gi|423157060|ref|ZP_17144153.1| ribosomal protein S1 [Vibrio cholerae HC-32A1]
gi|423160630|ref|ZP_17147570.1| ribosomal protein S1 [Vibrio cholerae HC-33A2]
gi|423165450|ref|ZP_17152179.1| ribosomal protein S1 [Vibrio cholerae HC-48B2]
gi|423731467|ref|ZP_17704770.1| ribosomal protein S1 [Vibrio cholerae HC-17A1]
gi|423735597|ref|ZP_17708794.1| ribosomal protein S1 [Vibrio cholerae HC-41B1]
gi|423822676|ref|ZP_17716686.1| ribosomal protein S1 [Vibrio cholerae HC-55C2]
gi|423856417|ref|ZP_17720493.1| ribosomal protein S1 [Vibrio cholerae HC-59A1]
gi|423882943|ref|ZP_17724080.1| ribosomal protein S1 [Vibrio cholerae HC-60A1]
gi|423895358|ref|ZP_17727105.1| ribosomal protein S1 [Vibrio cholerae HC-62A1]
gi|423930796|ref|ZP_17731499.1| ribosomal protein S1 [Vibrio cholerae HC-77A1]
gi|423956429|ref|ZP_17734983.1| ribosomal protein S1 [Vibrio cholerae HE-40]
gi|423985215|ref|ZP_17738532.1| ribosomal protein S1 [Vibrio cholerae HE-46]
gi|423998201|ref|ZP_17741453.1| ribosomal protein S1 [Vibrio cholerae HC-02C1]
gi|424002911|ref|ZP_17745986.1| ribosomal protein S1 [Vibrio cholerae HC-17A2]
gi|424006700|ref|ZP_17749670.1| ribosomal protein S1 [Vibrio cholerae HC-37A1]
gi|424009937|ref|ZP_17752874.1| ribosomal protein S1 [Vibrio cholerae HC-44C1]
gi|424017094|ref|ZP_17756923.1| ribosomal protein S1 [Vibrio cholerae HC-55B2]
gi|424020019|ref|ZP_17759805.1| ribosomal protein S1 [Vibrio cholerae HC-59B1]
gi|424024681|ref|ZP_17764332.1| ribosomal protein S1 [Vibrio cholerae HC-62B1]
gi|424027566|ref|ZP_17767169.1| ribosomal protein S1 [Vibrio cholerae HC-69A1]
gi|424586838|ref|ZP_18026417.1| ribosomal protein S1 [Vibrio cholerae CP1030(3)]
gi|424591580|ref|ZP_18031007.1| ribosomal protein S1 [Vibrio cholerae CP1037(10)]
gi|424595485|ref|ZP_18034806.1| ribosomal protein S1 [Vibrio cholerae CP1040(13)]
gi|424599401|ref|ZP_18038582.1| ribosomal protein S1 [Vibrio Cholerae CP1044(17)]
gi|424602122|ref|ZP_18041264.1| ribosomal protein S1 [Vibrio cholerae CP1047(20)]
gi|424607093|ref|ZP_18046037.1| ribosomal protein S1 [Vibrio cholerae CP1050(23)]
gi|424610916|ref|ZP_18049755.1| ribosomal protein S1 [Vibrio cholerae HC-39A1]
gi|424613729|ref|ZP_18052517.1| ribosomal protein S1 [Vibrio cholerae HC-41A1]
gi|424617709|ref|ZP_18056381.1| ribosomal protein S1 [Vibrio cholerae HC-42A1]
gi|424622488|ref|ZP_18060996.1| ribosomal protein S1 [Vibrio cholerae HC-47A1]
gi|424625387|ref|ZP_18063848.1| ribosomal protein S1 [Vibrio cholerae HC-50A1]
gi|424629873|ref|ZP_18068160.1| ribosomal protein S1 [Vibrio cholerae HC-51A1]
gi|424633916|ref|ZP_18072016.1| ribosomal protein S1 [Vibrio cholerae HC-52A1]
gi|424636998|ref|ZP_18075006.1| ribosomal protein S1 [Vibrio cholerae HC-55A1]
gi|424640907|ref|ZP_18078790.1| ribosomal protein S1 [Vibrio cholerae HC-56A1]
gi|424645452|ref|ZP_18083188.1| ribosomal protein S1 [Vibrio cholerae HC-56A2]
gi|424648975|ref|ZP_18086638.1| ribosomal protein S1 [Vibrio cholerae HC-57A1]
gi|424653221|ref|ZP_18090601.1| ribosomal protein S1 [Vibrio cholerae HC-57A2]
gi|424657042|ref|ZP_18094327.1| ribosomal protein S1 [Vibrio cholerae HC-81A2]
gi|429887943|ref|ZP_19369447.1| SSU ribosomal protein S1p [Vibrio cholerae PS15]
gi|440710118|ref|ZP_20890769.1| SSU ribosomal protein S1p [Vibrio cholerae 4260B]
gi|443504278|ref|ZP_21071236.1| ribosomal protein S1 [Vibrio cholerae HC-64A1]
gi|443508176|ref|ZP_21074939.1| ribosomal protein S1 [Vibrio cholerae HC-65A1]
gi|443512018|ref|ZP_21078656.1| ribosomal protein S1 [Vibrio cholerae HC-67A1]
gi|443515576|ref|ZP_21082087.1| ribosomal protein S1 [Vibrio cholerae HC-68A1]
gi|443519370|ref|ZP_21085766.1| ribosomal protein S1 [Vibrio cholerae HC-71A1]
gi|443524260|ref|ZP_21090473.1| ribosomal protein S1 [Vibrio cholerae HC-72A2]
gi|443527894|ref|ZP_21093943.1| ribosomal protein S1 [Vibrio cholerae HC-78A1]
gi|443531857|ref|ZP_21097871.1| ribosomal protein S1 [Vibrio cholerae HC-7A1]
gi|443535654|ref|ZP_21101532.1| ribosomal protein S1 [Vibrio cholerae HC-80A1]
gi|443539201|ref|ZP_21105055.1| ribosomal protein S1 [Vibrio cholerae HC-81A1]
gi|449055655|ref|ZP_21734323.1| SSU ribosomal protein S1p [Vibrio cholerae O1 str. Inaba G4222]
gi|9656450|gb|AAF95063.1| ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|146315622|gb|ABQ20161.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|150423151|gb|EDN15098.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
gi|227009933|gb|ACP06145.1| ribosomal protein S1 [Vibrio cholerae M66-2]
gi|227013813|gb|ACP10023.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|229332833|gb|EEN98319.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
gi|229337516|gb|EEO02533.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
gi|229340762|gb|EEO05767.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
gi|229343600|gb|EEO08575.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
gi|229348006|gb|EEO12965.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
gi|229355494|gb|EEO20415.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
gi|229370190|gb|ACQ60613.1| SSU ribosomal protein S1p [Vibrio cholerae MJ-1236]
gi|254844708|gb|EET23122.1| ribosomal protein S1 [Vibrio cholerae MO10]
gi|255737156|gb|EET92552.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
gi|327484459|gb|AEA78866.1| SSU ribosomal protein S1p [Vibrio cholerae LMA3984-4]
gi|340036446|gb|EGQ97422.1| ribosomal protein S1 [Vibrio cholerae HC-49A2]
gi|340037420|gb|EGQ98395.1| ribosomal protein S1 [Vibrio cholerae HCUF01]
gi|340038899|gb|EGQ99873.1| ribosomal protein S1 [Vibrio cholerae HE39]
gi|340046621|gb|EGR07551.1| ribosomal protein S1 [Vibrio cholerae HE48]
gi|341621315|gb|EGS47061.1| ribosomal protein S1 [Vibrio cholerae HC-70A1]
gi|341621458|gb|EGS47203.1| ribosomal protein S1 [Vibrio cholerae HC-48A1]
gi|341622383|gb|EGS48046.1| ribosomal protein S1 [Vibrio cholerae HC-40A1]
gi|341636653|gb|EGS61347.1| ribosomal protein S1 [Vibrio cholerae HC-02A1]
gi|341637616|gb|EGS62294.1| ribosomal protein S1 [Vibrio cholerae HFU-02]
gi|341644312|gb|EGS68537.1| ribosomal protein S1 [Vibrio cholerae BJG-01]
gi|341646367|gb|EGS70481.1| ribosomal protein S1 [Vibrio cholerae HC-38A1]
gi|356417644|gb|EHH71259.1| ribosomal protein S1 [Vibrio cholerae HC-06A1]
gi|356418516|gb|EHH72113.1| ribosomal protein S1 [Vibrio cholerae HC-21A1]
gi|356423090|gb|EHH76551.1| ribosomal protein S1 [Vibrio cholerae HC-19A1]
gi|356428536|gb|EHH81762.1| ribosomal protein S1 [Vibrio cholerae HC-22A1]
gi|356430194|gb|EHH83403.1| ribosomal protein S1 [Vibrio cholerae HC-23A1]
gi|356433549|gb|EHH86738.1| ribosomal protein S1 [Vibrio cholerae HC-28A1]
gi|356439717|gb|EHH92682.1| ribosomal protein S1 [Vibrio cholerae HC-32A1]
gi|356444728|gb|EHH97537.1| ribosomal protein S1 [Vibrio cholerae HC-43A1]
gi|356445727|gb|EHH98529.1| ribosomal protein S1 [Vibrio cholerae HC-33A2]
gi|356450971|gb|EHI03676.1| ribosomal protein S1 [Vibrio cholerae HC-48B2]
gi|356451937|gb|EHI04616.1| ribosomal protein S1 [Vibrio cholerae HC-61A1]
gi|356646952|gb|AET27007.1| 30S ribosomal protein S1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795258|gb|AFC58729.1| 30S ribosomal protein S1 [Vibrio cholerae IEC224]
gi|395916572|gb|EJH27402.1| ribosomal protein S1 [Vibrio cholerae CP1032(5)]
gi|395917324|gb|EJH28152.1| ribosomal protein S1 [Vibrio cholerae CP1041(14)]
gi|395918681|gb|EJH29505.1| ribosomal protein S1 [Vibrio cholerae CP1038(11)]
gi|395927682|gb|EJH38445.1| ribosomal protein S1 [Vibrio cholerae CP1042(15)]
gi|395928457|gb|EJH39210.1| ribosomal protein S1 [Vibrio cholerae CP1046(19)]
gi|395931743|gb|EJH42487.1| ribosomal protein S1 [Vibrio cholerae CP1048(21)]
gi|395939358|gb|EJH50040.1| ribosomal protein S1 [Vibrio cholerae HC-20A2]
gi|395940675|gb|EJH51356.1| ribosomal protein S1 [Vibrio cholerae HC-43B1]
gi|395942890|gb|EJH53566.1| ribosomal protein S1 [Vibrio cholerae HC-46A1]
gi|395952101|gb|EJH62715.1| ribosomal protein S1 [Vibrio cholerae HE-25]
gi|395953714|gb|EJH64327.1| ribosomal protein S1 [Vibrio cholerae HE-45]
gi|395958915|gb|EJH69370.1| ribosomal protein S1 [Vibrio cholerae HC-56A2]
gi|395959520|gb|EJH69948.1| ribosomal protein S1 [Vibrio cholerae HC-57A2]
gi|395962166|gb|EJH72467.1| ribosomal protein S1 [Vibrio cholerae HC-42A1]
gi|395970877|gb|EJH80594.1| ribosomal protein S1 [Vibrio cholerae HC-47A1]
gi|395973480|gb|EJH83039.1| ribosomal protein S1 [Vibrio cholerae CP1030(3)]
gi|395975863|gb|EJH85337.1| ribosomal protein S1 [Vibrio cholerae CP1047(20)]
gi|408007238|gb|EKG45331.1| ribosomal protein S1 [Vibrio cholerae HC-39A1]
gi|408012529|gb|EKG50306.1| ribosomal protein S1 [Vibrio cholerae HC-50A1]
gi|408013138|gb|EKG50883.1| ribosomal protein S1 [Vibrio cholerae HC-41A1]
gi|408018221|gb|EKG55680.1| ribosomal protein S1 [Vibrio cholerae HC-52A1]
gi|408023460|gb|EKG60623.1| ribosomal protein S1 [Vibrio cholerae HC-56A1]
gi|408024048|gb|EKG61184.1| ribosomal protein S1 [Vibrio cholerae HC-55A1]
gi|408031470|gb|EKG68092.1| ribosomal protein S1 [Vibrio cholerae CP1037(10)]
gi|408032378|gb|EKG68964.1| ribosomal protein S1 [Vibrio cholerae CP1040(13)]
gi|408032924|gb|EKG69493.1| ribosomal protein S1 [Vibrio cholerae HC-57A1]
gi|408041784|gb|EKG77878.1| ribosomal protein S1 [Vibrio Cholerae CP1044(17)]
gi|408043268|gb|EKG79274.1| ribosomal protein S1 [Vibrio cholerae CP1050(23)]
gi|408053600|gb|EKG88605.1| ribosomal protein S1 [Vibrio cholerae HC-81A2]
gi|408055226|gb|EKG90165.1| ribosomal protein S1 [Vibrio cholerae HC-51A1]
gi|408607684|gb|EKK81087.1| ribosomal protein S1 [Vibrio cholerae CP1033(6)]
gi|408618818|gb|EKK91876.1| ribosomal protein S1 [Vibrio cholerae CP1035(8)]
gi|408620163|gb|EKK93175.1| ribosomal protein S1 [Vibrio cholerae HC-1A2]
gi|408624089|gb|EKK97041.1| ribosomal protein S1 [Vibrio cholerae HC-17A1]
gi|408629780|gb|EKL02449.1| ribosomal protein S1 [Vibrio cholerae HC-41B1]
gi|408634652|gb|EKL06887.1| ribosomal protein S1 [Vibrio cholerae HC-55C2]
gi|408640705|gb|EKL12491.1| ribosomal protein S1 [Vibrio cholerae HC-59A1]
gi|408641067|gb|EKL12848.1| ribosomal protein S1 [Vibrio cholerae HC-60A1]
gi|408648891|gb|EKL20208.1| ribosomal protein S1 [Vibrio cholerae HC-61A2]
gi|408654228|gb|EKL25370.1| ribosomal protein S1 [Vibrio cholerae HC-77A1]
gi|408655158|gb|EKL26283.1| ribosomal protein S1 [Vibrio cholerae HC-62A1]
gi|408657650|gb|EKL28728.1| ribosomal protein S1 [Vibrio cholerae HE-40]
gi|408664446|gb|EKL35283.1| ribosomal protein S1 [Vibrio cholerae HE-46]
gi|408845308|gb|EKL85424.1| ribosomal protein S1 [Vibrio cholerae HC-37A1]
gi|408846081|gb|EKL86193.1| ribosomal protein S1 [Vibrio cholerae HC-17A2]
gi|408852556|gb|EKL92378.1| ribosomal protein S1 [Vibrio cholerae HC-02C1]
gi|408856193|gb|EKL95888.1| ribosomal protein S1 [Vibrio cholerae HC-46B1]
gi|408860002|gb|EKL99656.1| ribosomal protein S1 [Vibrio cholerae HC-55B2]
gi|408863732|gb|EKM03206.1| ribosomal protein S1 [Vibrio cholerae HC-44C1]
gi|408867113|gb|EKM06475.1| ribosomal protein S1 [Vibrio cholerae HC-59B1]
gi|408870423|gb|EKM09703.1| ribosomal protein S1 [Vibrio cholerae HC-62B1]
gi|408878869|gb|EKM17862.1| ribosomal protein S1 [Vibrio cholerae HC-69A1]
gi|429224942|gb|EKY31240.1| SSU ribosomal protein S1p [Vibrio cholerae PS15]
gi|439974341|gb|ELP50518.1| SSU ribosomal protein S1p [Vibrio cholerae 4260B]
gi|443431223|gb|ELS73775.1| ribosomal protein S1 [Vibrio cholerae HC-64A1]
gi|443435118|gb|ELS81262.1| ribosomal protein S1 [Vibrio cholerae HC-65A1]
gi|443439001|gb|ELS88716.1| ribosomal protein S1 [Vibrio cholerae HC-67A1]
gi|443442986|gb|ELS96288.1| ribosomal protein S1 [Vibrio cholerae HC-68A1]
gi|443446788|gb|ELT03444.1| ribosomal protein S1 [Vibrio cholerae HC-71A1]
gi|443449594|gb|ELT09885.1| ribosomal protein S1 [Vibrio cholerae HC-72A2]
gi|443453766|gb|ELT17584.1| ribosomal protein S1 [Vibrio cholerae HC-78A1]
gi|443457247|gb|ELT24644.1| ribosomal protein S1 [Vibrio cholerae HC-7A1]
gi|443461194|gb|ELT32267.1| ribosomal protein S1 [Vibrio cholerae HC-80A1]
gi|443465301|gb|ELT39961.1| ribosomal protein S1 [Vibrio cholerae HC-81A1]
gi|448264694|gb|EMB01931.1| SSU ribosomal protein S1p [Vibrio cholerae O1 str. Inaba G4222]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + I + A L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain-containing protein [Clostridium thermocellum ATCC
27405]
gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|385778858|ref|YP_005688023.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|419723125|ref|ZP_14250260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
gi|419724971|ref|ZP_14252026.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum ATCC 27405]
gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|380771591|gb|EIC05456.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|380780892|gb|EIC10555.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
Length = 694
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 27/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG++ + + F+P Q+S + K ++E K I+V++++ NE+ +K+V
Sbjct: 410 GGVIASYKGVRIFVPASQVSDRYV-----KDLNEFLK----RSITVRILELNEKRRKVVG 460
Query: 173 S-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S EK+A+ N+ + + V +F G D+GAF+ + DGL +H+SE
Sbjct: 461 SARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGVDGL------IHISE 514
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+SW ++ ++L GDEV V V++ D+EK +++L +++E++P + EK
Sbjct: 515 LSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEK 565
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G +++G ++ G V + G + ++S + K P + + G +
Sbjct: 482 EVGKVFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTR-VKHPSEVLK------VGDEVE 534
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF---VGR--DYGAFIHLRFPDGL 209
V V++ ++E KK+ + D W K + V D+ V R +GAF+ L
Sbjct: 535 VTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELE----- 589
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GLVH+S++S + + D L G +V K+I++D E +I+LSIK++
Sbjct: 590 KGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEV 640
>gi|343504831|ref|ZP_08742505.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
gi|342810447|gb|EGU45530.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVAVGDEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLENLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
Length = 567
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V L FLPF S + +P K+ EI G+ + V+V+ + + +V
Sbjct: 127 GGFAVDIEGLKAFLPF-----SQAFLKPPKNPEEI----IGTTLKVEVVSVDRKKNNVVV 177
Query: 173 SEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSE 220
S ++ + + R +E++ G+ DYG F+ L DGL +HVS+
Sbjct: 178 SHRNYLEKESERRKKELLENLEEGQVLEGTVKSITDYGVFVDLGGVDGL------LHVSD 231
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+SW ++ + GD+++VKVIK DREK +I L IKQL DP ET+ + P+G
Sbjct: 232 ISWGRVKHPSNYFKVGDKIKVKVIKYDREKEKIALGIKQLTPDP-WETVAEKYPEG 286
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGK+ G V V G + ++S + K P + I E+
Sbjct: 276 WETVAEKYPEGKRIEGKVVSLTNFGAFVELEPGVEGLIHISELSWTKRIKHP-RDILEV- 333
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVE-DIFVGRDYGAF 200
G + V V+ + E +++ S K D + ++S + +E + D+G F
Sbjct: 334 ----GDKVEVVVLGVDSENRRVSLSLKQVEPNPWDVLVEQFSEGMVIEAPVKTVTDFGVF 389
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + + + G +HVS++SW I+ + GD ++ ++KIDREK ++ L +KQL
Sbjct: 390 VEV-----MEGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVILKIDREKEKLALGVKQL 444
Query: 261 EEDPLLETLEK 271
DP EK
Sbjct: 445 TPDPWESVPEK 455
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G +I +++ + E +KL K W + V + G+ D+G F+ L
Sbjct: 420 GDMIQAVILKIDREKEKLALGVKQLTPDPWESVPEKYPVGSVVTGKVSNVTDFGVFVELE 479
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
+ GLVHVSE+S ++ + G EV+ KV+KI+ E RI LSI
Sbjct: 480 -----EGVEGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRRIGLSI 527
>gi|262166045|ref|ZP_06033782.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
gi|262025761|gb|EEY44429.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVQVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|399544568|ref|YP_006557876.1| 30S ribosomal protein S1 [Marinobacter sp. BSs20148]
gi|399159900|gb|AFP30463.1| 30S ribosomal protein S1 [Marinobacter sp. BSs20148]
Length = 564
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 24/222 (10%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGF-NG---GGLLVRFFSL 122
V+ L+ D SR A A E F E ++G NG GG V +
Sbjct: 68 VDVALEAVEDGFGETRLSREKAKRAEAWTVLEKSFAAEEVVKGIINGKVKGGFTVDLAGI 127
Query: 123 VGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
FLP P +H KE + + ++ + ++S + + E +E+
Sbjct: 128 RAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVLEAENS-----AER 182
Query: 176 DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 234
+A+ + + ++ I DYGAF+ L DGL H+T +++W I+ +I+N
Sbjct: 183 EALLETLTEGLTIKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVN 236
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
GDE+ VKV+K DRE++R++L +KQL EDP +E ++ P+G
Sbjct: 237 VGDEINVKVLKFDRERNRVSLGLKQLGEDPWVE-IKARYPEG 277
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVGVMILDIDEERRRISLGIKQCVSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+S N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 DFSGNFNKGDKISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 410 KKGDEVDTVILSVDPERERISLGIKQLESDPFAE 443
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLTEGLTIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + +R R
Sbjct: 234 IVN------VGDEINVKVLKFDRERNRVSLGLKQLGEDPWVEIKARYPEGSKVTARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCVSNP 353
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K
Sbjct: 473 EVEAILKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVK 520
>gi|149675741|dbj|BAF64753.1| ribosomal protein S1 [Shewanella livingstonensis]
Length = 555
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+D + V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKHIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W + I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKHIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
>gi|114563294|ref|YP_750807.1| 30S ribosomal protein S1 [Shewanella frigidimarina NCIMB 400]
gi|114334587|gb|ABI71969.1| SSU ribosomal protein S1P [Shewanella frigidimarina NCIMB 400]
Length = 555
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGFIYEGKIQGFNGGGLLVRFFS 121
V+ LD D SR A A +AY+++ + G I G GG V
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI-GIINGKVKGGFTVELNG 126
Query: 122 LVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174
+ FLP P +H KE + + ++ + ++S + + +E +E
Sbjct: 127 IRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESS-----AE 181
Query: 175 KDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+D + V+ I DYGAF+ L DGL H+T +++W ++ +I+
Sbjct: 182 RDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIV 235
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
N GDE+ VKV+K DRE++R++L +KQL EDP LE
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDEVEVLVLDIDEERRRISLGLKQCKVNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++R N D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 DFATRYNKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ +D E+ RI+L +KQ E+DP
Sbjct: 411 KGDEIHAVVLSVDPERERISLGVKQTEDDPF 441
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESESSAERDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + S R GR
Sbjct: 234 IVN------VGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKVNP 353
>gi|343510918|ref|ZP_08748109.1| 30S ribosomal protein S1 [Vibrio scophthalmi LMG 19158]
gi|343517333|ref|ZP_08754339.1| 30S ribosomal protein S1 [Vibrio sp. N418]
gi|342793657|gb|EGU29447.1| 30S ribosomal protein S1 [Vibrio sp. N418]
gi|342799864|gb|EGU35414.1| 30S ribosomal protein S1 [Vibrio scophthalmi LMG 19158]
Length = 556
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVAVGDEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSVERDELLENLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + VSE++ D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 474 VEGYIRVSEIARDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEADEQEAMAS 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 INKQ 537
>gi|406967508|gb|EKD92572.1| RNA binding S1 protein [uncultured bacterium]
Length = 385
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK- 138
+ SQ R+ W+ E+ + K N GGLL+ + GF+P Q++P H +
Sbjct: 85 KASQERA---WRRFLDAYENNEVITVKPNEANKGGLLLEVDGIKGFIPVSQLAPLHYPRV 141
Query: 139 --EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVNVEDIFV 193
I + K L +SVK+I ++E KL+ SE+ A + + + V +
Sbjct: 142 NGADANLIFDKLKKLISVPLSVKIINIDKENGKLILSERSAYQEERKNALKSLKVGSVVK 201
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G+ +G F+ L GLVH+SE++W ++D D GD V V+VI ID
Sbjct: 202 GKISGVVKFGIFV------AFDELEGLVHISEIAWGHVKDPSDYGKVGDPVEVQVIGIDG 255
Query: 249 EKSRITLSIKQLEEDPLLETLEK 271
+K I+LS+K+L DP E +K
Sbjct: 256 DK--ISLSMKRLIPDPWAEAAQK 276
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +GKI G G+ V F L G + +++ H K+P G G + V+
Sbjct: 197 GSVVKGKISGVVKFGIFVAFDELEGLVHISEIAWGH-VKDPSDY------GKVGDPVEVQ 249
Query: 160 VIQANEE-----MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VI + + MK+L+ W + + + V+ + G +GAFI L
Sbjct: 250 VIGIDGDKISLSMKRLIPDP----WAEAAQKFPVDKVVKGEINRLAPFGAFIKLT----- 300
Query: 210 YHLTGLVHVSE-VSWD--LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GL+H+SE VS D + + D+L GD + KVI ++ E+ RI LS+K L
Sbjct: 301 DDINGLIHLSELVSKDGSPVNEPGDVLTVGDMIEAKVIDVNLEEHRIGLSMKAL 354
>gi|121997364|ref|YP_001002151.1| 30S ribosomal protein S1 [Halorhodospira halophila SL1]
gi|121588769|gb|ABM61349.1| SSU ribosomal protein S1P [Halorhodospira halophila SL1]
Length = 560
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 49 LCPVGKFSTNAAKITPTTVNPI---LDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ PV +F A + + + + LD D SR A W+A E+
Sbjct: 47 VIPVSQFYDEAGNLEVSVGDEVEVALDTVEDGFGETRLSRERAKRAYAWRALEQAYENSE 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G+I G GG V + FLP + P L G + K
Sbjct: 107 TVSGQISGKVKGGFTVDLGHIRAFLPGSLVDIRPVRDTTY-----------LEGKDLEFK 155
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPD 207
VI+ + +V S + V +YS+ +E + G DYGAF+ L D
Sbjct: 156 VIKLDARRNNVVVSRRAVVEEEYSAEREALLEKLQEGETLKGIVKNLTDYGAFVDLGGID 215
Query: 208 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
GL H+T +++W +++ +++ G E+ VKV+K DRE++R++L +KQL DP E
Sbjct: 216 GLLHIT------DMAWRRVKNPSEVVEVGQEIEVKVLKFDRERNRVSLGLKQLGADP-WE 268
Query: 268 TLEKVIPQG 276
+ + P+G
Sbjct: 269 AIAQRYPEG 277
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 25/192 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W+A A+ Y E G GK+ G V V G + +M ++ P K +
Sbjct: 267 WEAIAQRYPE-GARVPGKVTNITEYGCFVEIEEGVEGLVHVSEMDWTNKNVNPAKLVA-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V ++ +EE +++ K W++++++ D VG+ D+G
Sbjct: 324 ----VGDDVEVMILDIDEERRRISLGMKQCQPNPWDEFAAKYAKGDRVVGQIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
F+ L + GLVH+S++SWD + +R+ +G+EV V+ ID E+ RI+L I
Sbjct: 380 FVGLEG-----GIDGLVHLSDLSWDEAGEEAVRN-YRKGEEVETVVLSIDPERERISLGI 433
Query: 258 KQLEEDPLLETL 269
KQLE+DPL + L
Sbjct: 434 KQLEQDPLSQWL 445
>gi|189425204|ref|YP_001952381.1| 30S ribosomal protein S1 [Geobacter lovleyi SZ]
gi|189421463|gb|ACD95861.1| ribosomal protein S1 [Geobacter lovleyi SZ]
Length = 573
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 31/244 (12%)
Query: 48 NLCPVGKFSTNAAKITPTTVNPI-LDDSSDANNRQSQSRSS--ADWKAARAYKESGFIYE 104
P+ +F ++ + + + + S D N+ S+ R+ A W+ G + E
Sbjct: 65 GFVPISEFRDAEGNVSVSVGDKVKVVSSRDGGNKFSKKRADQMAAWETIHEAGGEGAVLE 124
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I GG V + FLP Q+ S G KVI N
Sbjct: 125 GTIIAKTNGGFTVAIGGINAFLPASQVDTRPSGN---------GDAYIGVAGQFKVISLN 175
Query: 165 EEMKKLVFSEKDAVWNKY--SSRVNVEDIFVGR----------DYGAFIHLRFPDGLYHL 212
++ +V S + + + S + +E + G+ +YGAF+ L DGL
Sbjct: 176 QKRGNIVLSRRALLEEERAESRKATLEKLSEGQIMQGVVKNLTEYGAFVDLGGVDGL--- 232
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
+HV+++SW + D+L G EV VK++K DREK ++++ IKQ DP + +
Sbjct: 233 ---LHVTDISWGRVGKPADVLKPGQEVNVKILKFDREKGKVSVGIKQTLPDPWQDIANR- 288
Query: 273 IPQG 276
P+G
Sbjct: 289 FPEG 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 176 DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDI 229
D W + R V G+ D+G FI + + GLVHVS++SW ++
Sbjct: 366 DNPWQSIAERYPVGTKLEGQIKNMTDFGMFIGIE-----EGIDGLVHVSDISWTKRVKHP 420
Query: 230 RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
D+ ++GD V+ V+K+D + R++L IKQL DP ++PQ P
Sbjct: 421 GDVYSKGDLVQAVVLKVDPQNERVSLGIKQLTPDPW-----SLVPQKYAP 465
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G ++VK+++ + E K+ K + W ++R G+ DYGAFI L
Sbjct: 253 GQEVNVKILKFDREKGKVSVGIKQTLPDPWQDIANRFPEGTRVSGKVVSLMDYGAFIELE 312
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVHVSE+SW ++ D+LN GD+V V V+ +D + +I+L +KQ+ ++
Sbjct: 313 -----SGIEGLVHVSEMSWTKRVRKAADMLNVGDQVDVVVLGVDLQNRKISLGLKQVNDN 367
Query: 264 PLLETLEK 271
P E+
Sbjct: 368 PWQSIAER 375
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+G F+ + + GL+HVSE+S + + +D GD + V+ D + RI+L
Sbjct: 478 DFGVFVEIE-----EGIEGLIHVSELSREKVPSAKDFAIVGDSIEAVVLNADSRERRISL 532
Query: 256 SIKQL 260
S+K L
Sbjct: 533 SVKSL 537
>gi|153825197|ref|ZP_01977864.1| ribosomal protein S1, partial [Vibrio cholerae MZO-2]
gi|149741176|gb|EDM55227.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
Length = 544
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 36 IPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 95
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 96 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 145
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 146 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 205
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 206 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 258
Query: 270 EKVIPQG 276
K P+G
Sbjct: 259 AKRYPEG 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 255 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 311
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 312 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 367
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 368 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 421
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 422 KQMENDPF 429
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 453 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 507
Query: 258 K---QLEEDPLLETLEK 271
K + EE ++ TL K
Sbjct: 508 KAKDEAEEQEVMATLNK 524
>gi|444378755|ref|ZP_21177945.1| SSU ribosomal protein S1p [Enterovibrio sp. AK16]
gi|443677097|gb|ELT83788.1| SSU ribosomal protein S1p [Enterovibrio sp. AK16]
Length = 556
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWIQLEKAYEEAETVI-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSVERDELLASLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+++R++L +KQL EDP
Sbjct: 249 DRDRTRVSLGLKQLGEDP 266
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIANRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W ++ N D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQNKGDRVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLQVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQMEEDPF 441
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + + ++ K + W ++R GR
Sbjct: 234 IVN------VGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIANRYPEGHKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 23/148 (15%)
Query: 122 LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNK 181
L GF+PF Q+S S +E L + +K + +EE +LV S + A+ +
Sbjct: 207 LQGFVPFSQISSKSSAEE-----------LLDKEVPLKFVDVDEEQSRLVLSNRKAMADS 255
Query: 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 236
+++ + + G + YGAFI + + GL+HVS++S D + DI +L G
Sbjct: 256 -QAQLGIGSVVTGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVSDISTVLQPG 308
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDP 264
D ++V ++ DRE+ R++LS K+LE P
Sbjct: 309 DTLKVMILSHDRERGRVSLSTKKLEPTP 336
>gi|449134813|ref|ZP_21770280.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
gi|448886528|gb|EMB16932.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
Length = 560
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 27/179 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + E I G N GGL + S+ GF+P Q+S + + + ++ + +I
Sbjct: 266 DEGSVVEATITGHNNGGLECKVGSVRGFMPISQIS--------EYRVEDCSEFVDQKMIC 317
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 205
+ V +AN LV S E++ + ++ DI G RD+GAF+ +
Sbjct: 318 L-VTEANARRGNLVLSRRAILEREREVKRQEQLEKIEPGDILEGVVRSVRDFGAFVDV-- 374
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L GL+HVS++SW+ I+ +++ EG V+V+V KID++ +++L+ + L E+P
Sbjct: 375 ----GGLDGLIHVSKLSWERIKHPSEVIEEGQNVKVRVDKIDKQTGKMSLTYRDLLENP 429
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I EG ++ G V L G + ++S K P + I E G +
Sbjct: 353 EPGDILEGVVRSVRDFGAFVDVGGLDGLIHVSKLS-WERIKHPSEVIEE------GQNVK 405
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V + +++ K+ + +D + W+ S V + G ++GAF+ L
Sbjct: 406 VRVDKIDKQTGKMSLTYRDLLENPWDSAESMFAVGSVHKGEVTRTAEFGAFVRL-----T 460
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL H+SE++ + + ++N GDEV VK++ DR+ ++ LSIK P E
Sbjct: 461 AGVEGLCHISELATHRVSRVSSVVNVGDEVDVKIMSFDRDSQKVGLSIKAAHAKPAAE 518
>gi|170720565|ref|YP_001748253.1| 30S ribosomal protein S1 [Pseudomonas putida W619]
gi|169758568|gb|ACA71884.1| ribosomal protein S1 [Pseudomonas putida W619]
Length = 558
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDEV V+V+K DRE++R++L +KQ+ EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDP 266
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAITARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNETGEEAVRRFKKGDELETVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G + V+V++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|420138995|ref|ZP_14646865.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CIG1]
gi|403248252|gb|EJY61838.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CIG1]
Length = 559
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDG 208
I+ +++ +V S + + + S+ +E + G+ DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEHEALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEHEALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 272 VIPQGLE 278
+ Q +E
Sbjct: 534 LRKQEVE 540
>gi|398846604|ref|ZP_10603571.1| ribosomal protein S1 [Pseudomonas sp. GM84]
gi|398252428|gb|EJN37618.1| ribosomal protein S1 [Pseudomonas sp. GM84]
Length = 558
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDEV V+V+K DRE++R++L +KQ+ EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDP 266
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDKITGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G + V+V++ + E ++ K A+ ++Y V+
Sbjct: 234 IVN------VGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITSRYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
Length = 398
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 54 KFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSA-DWKAARAYKE------SGFIYEGK 106
+F N K + + A NR SR + KAA A KE G I +GK
Sbjct: 141 RFVRNTEKFVGQEFEAKIKEVVPAENRFILSRREVVEEKAAAARKEVFSKIEEGSIVKGK 200
Query: 107 IQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166
+ G V + G + ++S H KS+ + G I VKV+ +EE
Sbjct: 201 VARLTSFGAFVDLGGVDGLVHVTELS--HERNVSPKSVVSV-----GEEIEVKVLSIDEE 253
Query: 167 MKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHV 218
++ S K W+ ++ D+ G+ D+GAF+ + L + GLVH+
Sbjct: 254 AGRVSLSLKATTPGPWDGVEQKLAAGDVVEGKVKRLTDFGAFVEV-----LPGIDGLVHI 308
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
S++S + + +D+L+ G EV+VKV+ ++ + R++LSIK LEE P
Sbjct: 309 SQISHKRVGNPKDVLSVGQEVKVKVLDVNADAERVSLSIKALEERP 354
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 29/165 (17%)
Query: 113 GGLLVRFFSLVGFLP-------FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V F L GF+P F + + +E + I E+ I+S
Sbjct: 120 GGLSVEFEGLRGFIPASMIDTRFVRNTEKFVGQEFEAKIKEVVPAENRFILS-------- 171
Query: 166 EMKKLVFSEKDAVWNKYS-SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVS 219
++ V EK A K S++ I G+ +GAF+ L DGL H+T L H
Sbjct: 172 --RREVVEEKAAAARKEVFSKIEEGSIVKGKVARLTSFGAFVDLGGVDGLVHVTELSHER 229
Query: 220 EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
VS + +++ G+E+ VKV+ ID E R++LS+K P
Sbjct: 230 NVSP------KSVVSVGEEIEVKVLSIDEEAGRVSLSLKATTPGP 268
>gi|443327239|ref|ZP_21055869.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442793178|gb|ELS02635.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 299
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 26/209 (12%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
RQ Q + + W ES + ++ G N GG+ L GF+P + + +
Sbjct: 102 RQMQLQDA--WDKVTEISESSKSTQIRVTGVNKGGITGDVEGLRGFIPRSHLRQRDNLE- 158
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG----- 194
L G +++V I+ N E +KLV S+++A+ + +R+ + G
Sbjct: 159 ----------SLIGQLLTVTFIEVNPEKRKLVLSQRNAMRAEALTRLVEGALVTGTIVNM 208
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+ YGAF+ L +TGL+HV EVS + +IL G E++V + ++D +R++
Sbjct: 209 KPYGAFVDLG------GVTGLLHVKEVSGTRTDSLENILQIGQEIKVVIAQVDEYNNRLS 262
Query: 255 LSIKQLEEDP--LLETLEKVIPQGLEPYL 281
LS K EE P +LE E+V+ E ++
Sbjct: 263 LSTKVFEEYPGEILEKFEQVMTTAEERFV 291
>gi|148549148|ref|YP_001269250.1| 30S ribosomal protein S1 [Pseudomonas putida F1]
gi|161378133|ref|NP_743928.2| 30S ribosomal protein S1 [Pseudomonas putida KT2440]
gi|167032375|ref|YP_001667606.1| 30S ribosomal protein S1 [Pseudomonas putida GB-1]
gi|325276950|ref|ZP_08142633.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
gi|339486340|ref|YP_004700868.1| 30S ribosomal protein S1 [Pseudomonas putida S16]
gi|386013356|ref|YP_005931633.1| RpsA [Pseudomonas putida BIRD-1]
gi|395444837|ref|YP_006385090.1| ribosomal protein S1 [Pseudomonas putida ND6]
gi|397695769|ref|YP_006533652.1| 30S ribosomal protein S1 [Pseudomonas putida DOT-T1E]
gi|421522461|ref|ZP_15969102.1| 30S ribosomal protein S1 [Pseudomonas putida LS46]
gi|431801327|ref|YP_007228230.1| 30S ribosomal protein S1 [Pseudomonas putida HB3267]
gi|148513206|gb|ABQ80066.1| SSU ribosomal protein S1P [Pseudomonas putida F1]
gi|166858863|gb|ABY97270.1| ribosomal protein S1 [Pseudomonas putida GB-1]
gi|313500062|gb|ADR61428.1| RpsA [Pseudomonas putida BIRD-1]
gi|324097915|gb|EGB96078.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
gi|338837183|gb|AEJ11988.1| 30S ribosomal protein S1 [Pseudomonas putida S16]
gi|388558834|gb|AFK67975.1| ribosomal protein S1 [Pseudomonas putida ND6]
gi|397332499|gb|AFO48858.1| 30S ribosomal protein S1 [Pseudomonas putida DOT-T1E]
gi|402753561|gb|EJX14054.1| 30S ribosomal protein S1 [Pseudomonas putida LS46]
gi|430792092|gb|AGA72287.1| 30S ribosomal protein S1 [Pseudomonas putida HB3267]
Length = 558
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDEV V+V+K DRE++R++L +KQ+ EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDP 266
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A A G + ++ G V G + +M ++ P K +
Sbjct: 267 WVAITARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 324 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNETGEEAVRRFKKGDELETVILSVDPERERISLGIKQ 435
Query: 260 LEEDPL 265
LE+DP
Sbjct: 436 LEDDPF 441
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G + V+V++ + E ++ K A+ +Y V+
Sbjct: 234 IVN------VGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGTRVQARVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
gi|158446521|gb|EDP23516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Parvimonas
micra ATCC 33270]
Length = 674
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 73 DSSDANNRQSQSR--SSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
D + N S R S DW+ + + E ++ GGLL + F+P
Sbjct: 356 DDGEGNVVLSTRRVESLKDWQNLVEKFNNKELVEAEVVKEVKGGLLATVDGINAFIPASH 415
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISV-----KVIQANEEMKKLVFSEK-DAVWNKYSS 184
++ S + I K L +II++ K++ + E+++ EK D W S
Sbjct: 416 ITTSF----VKDFTPYIGKKLECAIINIDERKKKIVLSRREVEEKELQEKLDLAW----S 467
Query: 185 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEV 239
++ V D+ G D+GAF++L DGL +HVS++SW+ I+ DIL+ GDEV
Sbjct: 468 KLAVGDVLRGTVRKLTDFGAFVNLGDVDGL------IHVSDISWNRIKKPSDILSVGDEV 521
Query: 240 RVKVIKIDREKSRITLSIKQLEEDPL 265
V ++K++RE++RI+L +KQL + P
Sbjct: 522 EVIILKLNRERNRISLGLKQLTKKPF 547
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L+ ++ GLVH+S++S D I+ D+LN G+EV+VK+I ID E +I+L
Sbjct: 569 DFGAFVKLK-----ENVEGLVHISQISHDHIEKASDVLNIGEEVQVKIINIDEENQKISL 623
Query: 256 SIKQL 260
SIK+L
Sbjct: 624 SIKEL 628
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
Y G++ + E+S D+ + +D+ +EG E+ V VIK+D + + LS +++E
Sbjct: 319 YRSDGIIKLDELSSDVTKKPKDLFHEGQEIDVYVIKLDDGEGNVVLSTRRVE 370
>gi|410635047|ref|ZP_11345667.1| small subunit ribosomal protein S1 [Glaciecola lipolytica E3]
gi|410145384|dbj|GAC12872.1| small subunit ribosomal protein S1 [Glaciecola lipolytica E3]
Length = 558
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 39/248 (15%)
Query: 50 CPVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESG 100
PV +F NA + + +D + DA +R+ R A + +AY+E
Sbjct: 48 IPVEQFK-NAEGVIEVAIGDTVDVALDAVEDGFGETILSREKAKRHEAWVELEKAYEEKE 106
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
I G I G GG V ++ FLP + + + + H L G + KV
Sbjct: 107 TII-GVINGKVKGGFTVEVNTVRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ + + +V S E+D + V+ I DYGAF+ L DG
Sbjct: 157 IKLDAKRNNVVVSRRAVIEAESSAERDQILANLEEGHEVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L +KQ+ DP E
Sbjct: 217 LLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSLGMKQMGSDPWQEI 270
Query: 269 LEKVIPQG 276
+ P+G
Sbjct: 271 ANR-YPEG 277
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G ++ V V++ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVVEVMVLEIDEERRRISLGLKQCKANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 EFAKSHEKNDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ+EEDP
Sbjct: 411 KGDEISAVVLQVDPERERISLGVKQIEEDPF 441
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDQILANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K W + ++R G
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGSDPWQEIANRYPEGSKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKANPWEE 356
>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3M9]
Length = 423
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + ++ G + + + GFN GG+ L GF+P Q+ + +E
Sbjct: 228 WERVKEMEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENHQE---------- 277
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A S + V + G + YG FI L
Sbjct: 278 -LVGKTLGVAFLEVNSETRKLVLSEKRAAVAARFSELEVGQLVEGQVAAVKPYGLFIDL- 335
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ IR++ ++GD V+ + ++D + RI L+ LE P
Sbjct: 336 -----GGISGLLHQSMITNGSLRSIREVFDQGDRVKAMITELDPGRGRIGLNTALLEGPP 390
Query: 265 --LLETLEKVI 273
LL +KV+
Sbjct: 391 GELLVEKDKVM 401
>gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
gi|417302698|ref|ZP_12089787.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
gi|440713140|ref|ZP_20893745.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
gi|32397082|emb|CAD72386.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
gi|327541012|gb|EGF27567.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
gi|436442159|gb|ELP35327.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
Length = 560
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 27/179 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + E I G N GGL + S+ GF+P Q+S + + + ++ + ++
Sbjct: 266 DEGSVVEATITGHNNGGLECKVGSVRGFMPISQIS--------EYRVEDCSEFVDQKMVC 317
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 205
+ V +AN LV S E++ + ++ DI G RD+GAF+ +
Sbjct: 318 L-VTEANARRGNLVLSRRAILEREREVKRQEQLEKIEPGDILEGVVRSVRDFGAFVDV-- 374
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L GL+HVS++SW+ I+ +++ EG V+V+V KID++ +++L+ + L E+P
Sbjct: 375 ----GGLDGLIHVSKLSWERIKHPSEVIEEGQNVKVRVDKIDKQTGKMSLTYRDLLENP 429
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I EG ++ G V L G + ++S K P + I E G +
Sbjct: 353 EPGDILEGVVRSVRDFGAFVDVGGLDGLIHVSKLS-WERIKHPSEVIEE------GQNVK 405
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V + +++ K+ + +D + W+ S V + G ++GAF+ L
Sbjct: 406 VRVDKIDKQTGKMSLTYRDLLENPWDSAESMFAVGSVHKGEVTRTAEFGAFVRL-----T 460
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL H+SE++ + + ++N GDEV VK++ DR+ ++ LSIK P E
Sbjct: 461 AGVEGLCHISELATHRVSRVSSVVNVGDEVDVKIMSFDRDSQKVGLSIKAAHAKPAAE 518
>gi|307106926|gb|EFN55170.1| hypothetical protein CHLNCDRAFT_57952 [Chlorella variabilis]
Length = 389
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 19/203 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH--------SCKEPQ 141
W ++ E ++ N GLLV L GFLP+ + PS S P
Sbjct: 90 WSEVLQMRKDHTTIETVVKSANKSGLLVPVGKLTGFLPYKLLDPSRLQQRRPDGSRIPPP 149
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RD 196
+ H+ L G+ + VKV Q K+L+ SEK + ++ ++ V DI G D
Sbjct: 150 PNGHQ---SLVGAPVRVKVTQVIVPEKRLIVSEKAVLLDELAAMVQPGDIIDGVVGSNMD 206
Query: 197 YGAFIHLRFPDG--LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI-KIDREKSRI 253
+GAF+ +G ++ + E+S+ + ++++ V+V V+ + ++++
Sbjct: 207 WGAFVECHTVNGEPCPRAEAVLPMRELSYSWLNSASEVVHPSQPVQVVVLYRETAPEAKV 266
Query: 254 TLSIKQLEEDPLLETLEKVIPQG 276
+S+K+LEEDPL ETL+ V+P G
Sbjct: 267 VVSLKRLEEDPLKETLDNVLPLG 289
>gi|421612518|ref|ZP_16053624.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
gi|408496639|gb|EKK01192.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
Length = 560
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 27/179 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + E I G N GGL + S+ GF+P Q+S + + + ++ + ++
Sbjct: 266 DEGSVVEATITGHNNGGLECKVGSVRGFMPISQIS--------EYRVEDCSEFVDQKMVC 317
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 205
+ V +AN LV S E++ + ++ DI G RD+GAF+ +
Sbjct: 318 L-VTEANARRGNLVLSRRAILEREREVKRQEQLEKIEPGDILEGVVRSVRDFGAFVDV-- 374
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L GL+HVS++SW+ I+ +++ EG V+V+V KID++ +++L+ + L E+P
Sbjct: 375 ----GGLDGLIHVSKLSWERIKHPSEVIEEGQNVKVRVDKIDKQTGKMSLTYRDLLENP 429
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I EG ++ G V L G + ++S K P + I E G +
Sbjct: 353 EPGDILEGVVRSVRDFGAFVDVGGLDGLIHVSKLS-WERIKHPSEVIEE------GQNVK 405
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V + +++ K+ + +D + W+ S V + G ++GAF+ L
Sbjct: 406 VRVDKIDKQTGKMSLTYRDLLENPWDSAESMFAVGSVHKGEVTRTAEFGAFVRL-----T 460
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL H+SE++ + + ++N GDEV VK++ DR+ ++ LSIK P E
Sbjct: 461 AGVEGLCHISELATHRVSRVSSVVNVGDEVDVKIMSFDRDSQKVGLSIKAAHAKPAAE 518
>gi|336233298|ref|YP_004590044.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
gi|335345239|gb|AEH39785.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
Length = 536
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 39/248 (15%)
Query: 50 CPVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESG 100
P+ +F + I T I+D S DA +R+ R A + AY+
Sbjct: 48 IPLEQFQDSEGNIEIKT-GDIIDVSLDAIEDGFGETLLSREKAKRHEAWIQLENAYENKH 106
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
I G I G GG V + FLP + + + ++H L G + KV
Sbjct: 107 SIL-GTINGKVKGGFTVELDEIRAFLPGSLVD----IRPIRDTVH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVG-----RDYGAFIHLRFPDG 208
I+ +++ +V S + + ++ S+ + +I G DYGAFI L DG
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSAERYQLLNNLKEGNIIQGIVKNLTDYGAFIDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W ++ +I+ GD++RVK++K D+EK+R++L +KQL DP +
Sbjct: 217 LLHIT------DMAWKRVKHPNEIVKIGDDIRVKILKFDQEKTRVSLGLKQLGIDPWI-N 269
Query: 269 LEKVIPQG 276
LEK P+G
Sbjct: 270 LEKRYPEG 277
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K+IH +G I V ++ +EE +++ K WNK+S + I G+
Sbjct: 314 KNIHPSKVVKSGESIQVSILNIDEERRRISLGIKQCTINPWNKFSKKNKRGCIVSGKIKS 373
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 252
D+G FI L+ + GLVH+S++SW ++ +GD++ V+++D E+ R
Sbjct: 374 ITDFGIFIGLKGG-----IDGLVHLSDLSWYTSGEESVKKYKKGDDISAIVLQVDSERER 428
Query: 253 ITLSIKQLEEDPL 265
I+L IKQL EDP
Sbjct: 429 ISLGIKQLTEDPF 441
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G I +G ++ G + + G L M+ K P
Sbjct: 175 ESENSAERYQLLNNLKEGNIIQGIVKNLTDYGAFIDLGGVDGLLHITDMAWKR-VKHP-- 231
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
+EI K G I VK+++ ++E +K+L + +Y + I
Sbjct: 232 --NEIVK--IGDDIRVKILKFDQEKTRVSLGLKQLGIDPWINLEKRYPEGTKHQGIVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++ G+ ++V ++ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVKSGESIQVSILNIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCTINP 353
>gi|21672576|ref|NP_660643.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|2500382|sp|Q44653.1|RS1_BUCAP RecName: Full=30S ribosomal protein S1
gi|1448954|gb|AAC05429.1| ribosomal protein S1 [Buchnera aphidicola]
gi|21623204|gb|AAM67854.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 559
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 39/250 (15%)
Query: 50 CPVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESG 100
PV +F NA + V +D + DA +R+ R A +A+++S
Sbjct: 48 IPVEQFK-NAQGLLDVKVGDQIDVALDAIEDGFGETLLSREKAKRHEAWLILEQAHEKSE 106
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ G I G GG V + FLP + + + +IH L G + KV
Sbjct: 107 TVI-GIINGKVKGGFTVELNEIRAFLPGSLVD----VRPVRDTIH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E+D + + ++ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W ++ +I+N GDE+ VK++K D+E++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDPWI-A 269
Query: 269 LEKVIPQGLE 278
+ P+G++
Sbjct: 270 ISNRYPEGIK 279
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WIAISNRYPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV---- 322
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--SRVNVEDIFVG------RDYGAF 200
+I+ V V+ +EE +++ K N + S + + I V D+G F
Sbjct: 323 --AVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L+ + GLVH+S++SW + ++ +GDE+ V+++D E+ RI+L IKQ
Sbjct: 381 IGLKGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQ 435
Query: 260 LEEDPL 265
LEEDP
Sbjct: 436 LEEDPF 441
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR 195
++ G I+VK+++ ++E ++ K A+ N+Y + + GR
Sbjct: 234 IVN------VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLS----GR 283
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDR 248
DYG F+ + + GLVHVSE+ W ++I ++ + V V V+ ID
Sbjct: 284 VTNLTDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVAVNNIVDVIVLDIDE 337
Query: 249 EKSRITLSIKQLEEDPLLE 267
E+ RI+L +KQ + +P E
Sbjct: 338 ERRRISLGLKQCKINPWQE 356
>gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 671
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G + EG +Q G V + G + +MS + K P + + G + V
Sbjct: 463 EGDVIEGTVQRLTDFGAFVDVGGVDGLIHISEMSWNR-IKHPSEVV------APGENVEV 515
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
+++ +EE ++ K W+++ S V V D G D+GAF+ L
Sbjct: 516 QILNLDEEKNRIALGLKQTTKRPWDEFVSSVEVGDTVTGHVVNLLDFGAFVRLE-----S 570
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GL+HVS++S D I+ DILN GDEV VKV ID E +I+LSIK L
Sbjct: 571 GVDGLLHVSQISRDHIEKPADILNIGDEVTVKVTDIDEENKKISLSIKAL 620
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL L F+P SH Q+ +++ G + ++I ++ +++V
Sbjct: 390 GGLTADVDGLKAFIP-----ASHVAMRFQRDLNK----FVGQDLECEIIDFDKAKRRIVL 440
Query: 173 SEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S K+ ++ S+++ D+ G D+GAF+ + DGL +H+SE
Sbjct: 441 SRKNIEEKQFEDTRKEVFSKLHEGDVIEGTVQRLTDFGAFVDVGGVDGL------IHISE 494
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+SW+ I+ +++ G+ V V+++ +D EK+RI L +KQ + P
Sbjct: 495 MSWNRIKHPSEVVAPGENVEVQILNLDEEKNRIALGLKQTTKRP 538
>gi|133870|sp|P14128.1|RS1_PROSP RecName: Full=30S ribosomal protein S1
gi|897799|emb|CAA26596.1| unnamed protein product [Providencia sp.]
Length = 378
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I G GG V + FLP + + + + H L G + KVI+ +
Sbjct: 5 GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVIKLD 55
Query: 165 EEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
++ +V S E+D + + V+ I DYGAF+ L DGL H+
Sbjct: 56 QKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHI 115
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 116 T------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWV-AIAKR 168
Query: 273 IPQG 276
P+G
Sbjct: 169 YPEG 172
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 227 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 281
Query: 212 LTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 282 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 336
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 70 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 128
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 129 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 182
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 183 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 236
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 237 ISLGLKQCKSNP 248
>gi|24983268|gb|AAN67392.1|AE016365_7 ribosomal protein S1 [Pseudomonas putida KT2440]
Length = 576
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 65 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 124
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 125 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 175
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 176 KLDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGL 235
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDEV V+V+K DRE++R++L +KQ+ EDP
Sbjct: 236 LHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDP 284
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A A G + ++ G V G + +M ++ P K +
Sbjct: 285 WVAITARYPEGTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 341
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ +EE +++ K W +S + N D G D+G F
Sbjct: 342 ---VGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIKSITDFGIF 398
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ RI+L IKQ
Sbjct: 399 IGL---DG--GIDGLVHLSDISWNETGEEAVRRFKKGDELETVILSVDPERERISLGIKQ 453
Query: 260 LEEDPL 265
LE+DP
Sbjct: 454 LEDDPF 459
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 193 EAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSE 251
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
++ G + V+V++ + E ++ K A+ +Y V+
Sbjct: 252 IVN------VGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGTRVQARVTNL 305
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 306 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 359
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 360 ISLGIKQCKSNP 371
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 496 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 538
>gi|425063489|ref|ZP_18466614.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
X73]
gi|404383052|gb|EJZ79509.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
X73]
Length = 549
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 33/222 (14%)
Query: 66 TVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
VN LD D SR A W + +AY+E + G I G GG V
Sbjct: 67 VVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEQATVI-GLINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
+ FLP + + ++++H L G + KVI+ +++ +V S + + +
Sbjct: 126 GVRAFLPGSLVD----TRPVRETLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 181 KYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+ S +E++ G DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ENSQEREQILENLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+I+N GDE+ VKV+K D++++R++L +KQL +DP + E
Sbjct: 231 PSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAE 272
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDVVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L DG + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKSITDFGIFIGL---DG--GIDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R +GDEV V+++D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKERISLGIKQLEEDPF 441
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|339477878|ref|YP_004706698.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
gi|338172429|gb|AEI74830.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
Length = 556
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R + +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRYESWLMLEKAYEQAATVI-GIINGKVKGGFTVEINGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + +VI+ +++ +V S ++D + + +
Sbjct: 140 PVRDTLH-----LEGKDLEFQVIKLDQKRNNVVVSRRAVIESESSTDRDQLLSNLQESIT 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAFI L DGL H+T +++W ++ +I++ G+E+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFIDLGGVDGLLHIT------DMAWKRVKHPSEIVHIGEEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQGL 277
DRE++R++L +KQL EDP + + K P+G+
Sbjct: 249 DRERTRVSLGLKQLSEDPWI-AIAKRYPEGI 278
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G GK+ G V V G + +M ++ P K ++
Sbjct: 267 WIAIAKRYPE-GIRLIGKVTNLTEYGCFVEIVEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G ++ V V+ +EE +++ K W K++ D G+ D+G
Sbjct: 324 ----VGKMVEVIVLDVDEERRRISLGMKQCKGNPWQKFAETYKKGDRVEGKIKSITDFGV 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH S+++W++I + +R+ +GDE+ V+++D + RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHSSDIAWNVIGEEAVRE-YKKGDEITAVVLQVDAGRERISLGI 433
Query: 258 KQLEEDPL 265
KQL EDPL
Sbjct: 434 KQLVEDPL 441
>gi|374623007|ref|ZP_09695525.1| 30S ribosomal protein S1 [Ectothiorhodospira sp. PHS-1]
gi|373942126|gb|EHQ52671.1| 30S ribosomal protein S1 [Ectothiorhodospira sp. PHS-1]
Length = 561
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A W+ E G I G GG V + FLP +
Sbjct: 85 SREKAKRAKA-WERLEEAMEKDETIAGMISGKVKGGFTVELGDIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + + A L G + K+I+ + +V S + V +YS+ N+++ V
Sbjct: 139 ---RPVRDTAY-LEGKELEFKLIKLDRRRNNVVVSRRAVVEKEYSAEREALLKNLQEGMV 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ +++N GDE++VKV+K
Sbjct: 195 LNGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSEVVNIGDEIQVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
DRE++R++L +KQL EDP E + + P G + K
Sbjct: 249 DRERNRVSLGLKQLGEDP-WENITRRYPVGTRLFGK 283
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRD 231
W+++++ N + G D+G F+ L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WDEFAAMHNKGEKVSGVIKSITDFGIFVGL---DG--GIDGLVHLSDLSWNMPGEEAVRN 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+E+ V+ +D E+ RI+L +KQL++DP
Sbjct: 409 -FRKGEEIEAVVLSVDPERERISLGLKQLDKDPF 441
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G++ SE+S D ++D R +LN GD V K + +DR+ +TLSIK E D E ++
Sbjct: 474 VDGILRASELSRDRVEDARSVLNVGDAVEAKFVGVDRKNRTVTLSIKAKESDEEAEVMQ 532
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
SA+ +A + G + G ++ G + + G L M+ K P + ++
Sbjct: 179 SAEREALLKNLQEGMVLNGIVKNLTDYGAFLDLGGIDGLLHITDMAWKR-VKHPSEVVN- 236
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYG 198
G I VKV++ + E ++ K + W + R V G+ DYG
Sbjct: 237 -----IGDEIQVKVLKFDRERNRVSLGLKQLGEDPWENITRRYPVGTRLFGKITNITDYG 291
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
F+ + DG+ GLVHVSE+ W + + ++ G+EV V ++ ID E+ RI+L +
Sbjct: 292 CFVEVE--DGV---EGLVHVSEMDWTNKNVNPAKVVVVGEEVEVMILDIDEERRRISLGM 346
Query: 258 KQLEEDP 264
KQ + +P
Sbjct: 347 KQCQPNP 353
>gi|157827436|ref|YP_001496500.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
gi|157802740|gb|ABV79463.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
Length = 572
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 102/241 (42%), Gaps = 56/241 (23%)
Query: 67 VNPILDDSSDANNRQ----------------------SQSRSSADWKAARAYKESGFIYE 104
V PI D SS N RQ +SRS A + KE G I E
Sbjct: 154 VRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKE-GMILE 212
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGLTGSIISV 158
G ++ G + S+ G L +S PS + QK + V
Sbjct: 213 GTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQK-------------VKV 259
Query: 159 KVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
VI+ NEE K++ K W K V G+ DYG FI L+ DGL
Sbjct: 260 MVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--DGL- 316
Query: 211 HLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL++
Sbjct: 317 --EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFA 374
Query: 270 E 270
E
Sbjct: 375 E 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 62 ITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKES-----------GFIYEGKIQGF 110
++P P + D D +++ S +A KE G +G I G
Sbjct: 72 LSPAHKLPEIGDLVDVYIEKTEGHSGKTLSREKAIKEELWGQLELMCSKGEFVDGTIFGR 131
Query: 111 NGGGLLVRFFSLVGFLPFPQMS------PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V +V FLP Q+ PS + ++P K I + K L ++S + I
Sbjct: 132 VKGGFTVDLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFK-ILSMDKKLGNIVVSRRAI- 189
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
+++ +D + +K + +E DYGAFI L DGL HLT ++
Sbjct: 190 ----LEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLT------DI 239
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
SW + ++L +V+V VIK + E RI+L +KQL+ +P E +++ P G
Sbjct: 240 SWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNP-WEKIKEEFPVG 293
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G GK+ F G+ + L G + ++S S + P+K++
Sbjct: 283 WEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTL---- 338
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDYGAF 200
G + V++ + E ++ S K N K++ V + D+G F
Sbjct: 339 --TIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETNPVGTVIKAPIRNITDFGIF 396
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L +L G++H +++W+ ++ +GDEV KV+ I+ EK +I+L IKQ
Sbjct: 397 VALS-----DNLDGMIHEGDITWEYNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQ 451
Query: 260 LEEDP 264
L +P
Sbjct: 452 LTPNP 456
>gi|37679484|ref|NP_934093.1| 30S ribosomal protein S1 [Vibrio vulnificus YJ016]
gi|320156766|ref|YP_004189145.1| 30S ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
gi|37198228|dbj|BAC94064.1| ribosomal protein S1 [Vibrio vulnificus YJ016]
gi|319932078|gb|ADV86942.1| SSU ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
Length = 556
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 29/243 (11%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGS 154
+ G I G GG V + FLP P +H KE + + ++ +
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNV 166
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLT 213
++S + + +E E+D + V+ I DYGAF+ L DGL H+T
Sbjct: 167 VVSRRAVIESEST-----VERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT 221
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
+++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + + K
Sbjct: 222 ------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRY 274
Query: 274 PQG 276
P+G
Sbjct: 275 PEG 277
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDATLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEEDPLLETL 269
K +E E +
Sbjct: 520 KAKDEAEEQEAM 531
>gi|27366257|ref|NP_761785.1| 30S ribosomal protein S1 [Vibrio vulnificus CMCP6]
gi|27362458|gb|AAO11312.1| ribosomal protein S1 [Vibrio vulnificus CMCP6]
Length = 556
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 29/243 (11%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGS 154
+ G I G GG V + FLP P +H KE + + ++ +
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNV 166
Query: 155 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLT 213
++S + + +E E+D + V+ I DYGAF+ L DGL H+T
Sbjct: 167 VVSRRAVIESEST-----VERDELLETLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT 221
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
+++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + + K
Sbjct: 222 ------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AIAKRY 274
Query: 274 PQG 276
P+G
Sbjct: 275 PEG 277
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVAGEETVRE-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDATLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEEDPLLETL 269
K +E E +
Sbjct: 520 KAKDEAEEQEAM 531
>gi|388545944|ref|ZP_10149223.1| 30S ribosomal protein S1 [Pseudomonas sp. M47T1]
gi|388276061|gb|EIK95644.1| 30S ribosomal protein S1 [Pseudomonas sp. M47T1]
Length = 562
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F A ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFYNEAGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +++N GDE+ VKV+K DRE++R++L KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEVVNVGDEIDVKVLKYDRERNRVSLGFKQLGEDP 266
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDEISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE DP
Sbjct: 411 KGDELNTVILSVDPERERISLGIKQLESDPF 441
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 VVN------VGDEIDVKVLKYDRERNRVSLGFKQLGEDPWVAIKARYPENTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVINLSIK 520
>gi|383784774|ref|YP_005469344.1| 30S ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
gi|383083687|dbj|BAM07214.1| ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
Length = 585
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 32/210 (15%)
Query: 71 LDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFL 126
L++ D + S+ AD W A G + EGK+ GG+ V L FL
Sbjct: 89 LEEREDLHGNLVLSKEKADRMKVWDAIEESFNRGDVMEGKVVARIKGGMTVDV-GLKAFL 147
Query: 127 PFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSS 184
P Q+ + + ++ + L G I V++I+ N++ ++ S + + W
Sbjct: 148 PGSQID--------LRPVRDMDR-LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRK 198
Query: 185 RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 234
+V ++ + G DYGAFI L DGL +H++++SW + + +D++N
Sbjct: 199 KVTMDALKEGEVLEGIVKNITDYGAFIDLGGIDGL------LHITDMSWGRVSNPQDLMN 252
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GD++ V V+K DR+ R++L +KQL DP
Sbjct: 253 VGDKLNVVVLKHDRDTGRVSLGLKQLSADP 282
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWN 180
G + +MS +H K P K ++ G ++ +V++ +E+ +K+ K W+
Sbjct: 318 GLMHVTEMSWNHEVKHPSKIMN------VGDVVEARVLKIDEKNRKISLGLKQLGPNPWD 371
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
R + + G+ D+GAF+ L + GL+H+S++SW ++ ++
Sbjct: 372 SVEERYPIGTVVSGKVKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSELFK 426
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+G +V V V+KI++E+ R++L KQL +DP
Sbjct: 427 KGQKVEVAVLKIEKERQRLSLGFKQLSQDP 456
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W + G + GK++ G V + G + MS + + P E+
Sbjct: 370 WDSVEERYPIGTVVSGKVKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPS----ELF 425
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN-----KYSSRVNVEDIFVG-RDYGA 199
K G + V V++ +E ++L K W+ +++ V+V+ + D+G
Sbjct: 426 K--KGQKVEVAVLKIEKERQRLSLGFKQLSQDPWDSEIPERFAVGVSVDGVITKVMDFGF 483
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F+ L + GLVHVSEV + Q + G + V+VIK+D + +I LS+K
Sbjct: 484 FVEL-----AEGVEGLVHVSEVDIESGQRLDQSYQVGSTISVRVIKLDPAERKIGLSVKP 538
Query: 260 LEE 262
+ E
Sbjct: 539 MPE 541
>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
Length = 381
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + ++E +I N GG +V L FLP + S E
Sbjct: 152 WETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASE---------- 201
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ G I +K ++ N+E KLV S + AV + + D++ G + YGAF+ +
Sbjct: 202 AMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEI- 260
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+S++S+D ++D+ L G ++ VI D+ RI LS K LE +P
Sbjct: 261 -----MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEP 315
>gi|87119277|ref|ZP_01075175.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
gi|86165668|gb|EAQ66935.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
Length = 561
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKA-ARAYKESGFIYEGKI 107
L G+F+ N ++ + D + + +++ + W+ +AY++S + G I
Sbjct: 54 LSESGEFTLNIGDEVKVALDAVEDGFGETKLSREKAKRAETWEVLEKAYEDSEIVV-GVI 112
Query: 108 QGFNGGGLLVRFFSLVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G GG V ++ FLP P SH L G + K+I
Sbjct: 113 NGKVKGGFTVDIANIRAFLPGSLVDVRPIRDTSH---------------LEGVDLEFKLI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++ + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVMEATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
+ P+G
Sbjct: 271 KARYPEG 277
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A +A G K+ G V G + +M ++ P K +
Sbjct: 267 WVAIKARYPEGTKVTAKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQ--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAF 200
G + V ++ +EE +++ K W ++++ N D G D+G F
Sbjct: 324 ---IGDEVEVMILDIDEERRRISLGVKQCTPNPWEEFATSYNKGDKISGGIKSITDFGVF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L + GLVH+S++SWD + +R +GD + V+ ID E+ RI+L +K
Sbjct: 381 IGLE-----GGIDGLVHLSDLSWDETGEEAVRQ-YKKGDNLETVVLSIDAERERISLGVK 434
Query: 259 QLEEDPLL 266
QLEEDP +
Sbjct: 435 QLEEDPFV 442
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EATNSAERETLLASLEEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG- 194
I G I VKV++ + E ++ K A+ +Y V
Sbjct: 234 IIA------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTKVTAKVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ +P E
Sbjct: 342 ISLGVKQCTPNPWEE 356
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ VSE+S D ++D +L EGD V VI +DR+ I LSIKQ
Sbjct: 478 LKVSELSRDRVEDATSVLKEGDSVEAAVINVDRKARTIALSIKQ 521
>gi|213579893|ref|ZP_03361719.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 443
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V + FLP + + + ++H L G + KVI+ +++ +V
Sbjct: 4 GGFTVELNGIRAFLPGSLVD----VRPVRDTLH-----LEGKELEFKVIKLDQKRNNVVV 54
Query: 173 S-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E+D + + V+ I DYGAF+ L DGL H+T +
Sbjct: 55 SRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHIT------D 108
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K P+G
Sbjct: 109 MAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWV-AIAKRYPEG 163
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 240 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 294
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 295 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 327
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 76 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 128
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 129 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 183
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 184 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 239
>gi|15602666|ref|NP_245738.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378774511|ref|YP_005176754.1| 30S ribosomal protein S1 [Pasteurella multocida 36950]
gi|383310481|ref|YP_005363291.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. HN06]
gi|386834049|ref|YP_006239364.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. 3480]
gi|421263540|ref|ZP_15714580.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|425065664|ref|ZP_18468784.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
P1059]
gi|12721105|gb|AAK02885.1| RpS1 [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597059|gb|AET15785.1| 30S ribosomal protein S1 [Pasteurella multocida 36950]
gi|380871753|gb|AFF24120.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. HN06]
gi|385200750|gb|AFI45605.1| ribosomal protein S1 [Pasteurella multocida subsp. multocida str.
3480]
gi|401689453|gb|EJS84888.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|404384040|gb|EJZ80485.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
P1059]
Length = 549
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 33/222 (14%)
Query: 66 TVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
VN LD D SR A W + +AY+E + G I G GG V
Sbjct: 67 VVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEQATVI-GLINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
+ FLP + + ++++H L G + KVI+ +++ +V S + + +
Sbjct: 126 GVRAFLPGSLVD----TRPVRETLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 181 KYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+ S +E++ G DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ENSQEREQILENLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+I+N GDE+ VKV+K D++++R++L +KQL +DP + E
Sbjct: 231 PSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAE 272
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDVVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L DG + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKSITDFGIFIGL---DG--GIDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R +GDEV V+++D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKERISLGIKQLEEDPF 441
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
Length = 381
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + ++E +I N GG +V L FLP + S E
Sbjct: 152 WETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASE---------- 201
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ G I +K ++ N+E KLV S + AV + + D++ G + YGAF+ +
Sbjct: 202 AMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEI- 260
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+S++S+D ++D+ L G ++ VI D+ RI LS K LE +P
Sbjct: 261 -----MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEP 315
>gi|417850726|ref|ZP_12496573.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|338220431|gb|EGP05945.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
Length = 549
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 33/222 (14%)
Query: 66 TVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
VN LD D SR A W + +AY+E + G I G GG V
Sbjct: 67 VVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEQATVI-GLINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
+ FLP + + ++++H L G + KVI+ +++ +V S + + +
Sbjct: 126 GVRAFLPGSLVD----TRPVRETLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 181 KYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+ S +E++ G DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ENSQEREQILENLQEGSEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+I+N GDE+ VKV+K D++++R++L +KQL +DP + E
Sbjct: 231 PSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAE 272
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDVVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L DG + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKSITDFGIFIGL---DG--GIDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R +GDEV V+++D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKERISLGIKQLEEDPF 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 254 TLSIKQLEEDPLLETLE 270
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|428218680|ref|YP_007103145.1| RNA binding S1 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427990462|gb|AFY70717.1| RNA binding S1 domain protein [Pseudanabaena sp. PCC 7367]
Length = 296
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ +AY+ I++ + N GG++V L GF+P ++ + + +
Sbjct: 106 WQQMQAYQAEETIFDCVVLHTNKGGVVVNAAGLRGFIPRSHLT-----------VKDNLE 154
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V VI+ NE +LV S +AV + + G R +G F++
Sbjct: 155 SLIGKTLPVSVIEINEPTNRLVLSNTNAVRTSVMGNLAKGQLVAGTVSGIRPFGVFLNF- 213
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED- 263
DG+ +GL+H+ E+S + DI + GD V +I ID ++RI+LS K LE
Sbjct: 214 --DGV---SGLLHIKEISQARVNDINAVFAIGDPVPAVIIDIDESRNRISLSTKLLENHS 268
Query: 264 -PLLETLEKVIPQGLEPYLKSFYK 286
LLE +V + E K+ K
Sbjct: 269 GELLENTAQVFAEAPERLEKNIQK 292
>gi|187932428|ref|YP_001885998.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
botulinum B str. Eklund 17B]
gi|187720581|gb|ACD21802.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
botulinum B str. Eklund 17B]
Length = 635
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 20/169 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + E +++ F G + + G L Q+S +H K+I +I K G +I VK
Sbjct: 479 GDVLEAEVKRFTNFGAFLDVNGIDGLLHLSQISWNHV-----KNIEDILK--KGEMIEVK 531
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
+I ++E KKL S K+ + W + I +G+ D+GAFI L P
Sbjct: 532 IIALDKENKKLSLSRKELLPKPWENVKEKYPEGSIVLGKVVRINDFGAFIELE-PG---- 586
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GLVH+S++S++ I ++L+ G+EV+ K++++D E R++LSIK +
Sbjct: 587 VDGLVHISKISFNRISHPSEVLSVGEEVKAKILEVDEENKRVSLSIKDI 635
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 37/194 (19%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +E KI+ + GL+ + + F+P Q+ + K+ K I++I + VK
Sbjct: 391 GKTFEVKIKEASENGLVAYYKGIRIFIPASQIDIKFT-KDKSKYINQI--------LEVK 441
Query: 160 VIQ-ANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
+I + EE KK++ S E++ +W +NV D+ ++GAF+
Sbjct: 442 LINYSAEEHKKVIASRRVLLEVLKETEEEKIW----ESLNVGDVLEAEVKRFTNFGAFLD 497
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ DGL HL S++SW+ +++I DIL +G+ + VK+I +D+E +++LS K+L
Sbjct: 498 VNGIDGLLHL------SQISWNHVKNIEDILKKGEMIEVKIIALDKENKKLSLSRKELLP 551
Query: 263 DPLLETLEKVIPQG 276
P E +++ P+G
Sbjct: 552 KP-WENVKEKYPEG 564
>gi|91205227|ref|YP_537582.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
gi|123388135|sp|Q1RJH1.1|RS1_RICBR RecName: Full=30S ribosomal protein S1
gi|91068771|gb|ABE04493.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
Length = 572
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 102/241 (42%), Gaps = 56/241 (23%)
Query: 67 VNPILDDSSDANNRQ----------------------SQSRSSADWKAARAYKESGFIYE 104
V PI D SS N RQ +SRS A + KE G I E
Sbjct: 154 VRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKE-GMILE 212
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGLTGSIISV 158
G ++ G + S+ G L +S PS + QK + V
Sbjct: 213 GTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQK-------------VKV 259
Query: 159 KVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
VI+ NEE K++ K W K V G+ DYG FI L+ DGL
Sbjct: 260 MVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--DGL- 316
Query: 211 HLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL++
Sbjct: 317 --EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFA 374
Query: 270 E 270
E
Sbjct: 375 E 375
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 62 ITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKES-----------GFIYEGKIQGF 110
++P P + D D +++ S +A KE G +G I G
Sbjct: 72 LSPAHKLPEIGDLVDVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTIFGR 131
Query: 111 NGGGLLVRFFSLVGFLPFPQMS------PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V +V FLP Q+ PS + ++P K I + K L ++S + I
Sbjct: 132 VKGGFTVDLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFK-ILSMDKKLGNIVVSRRAI- 189
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
+++ +D + +K + +E DYGAFI L DGL HLT ++
Sbjct: 190 ----LEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLT------DI 239
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
SW + ++L +V+V VIK + E RI+L +KQL+ +P E +++ P G
Sbjct: 240 SWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNP-WEKIKEEFPVG 293
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G GK+ F G+ + L G + ++S S + P+K++
Sbjct: 283 WEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTL---- 338
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDYGAF 200
G + V++ + E ++ S K N K++ V + D+G F
Sbjct: 339 --TIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETNPVGTVIKAPIRNITDFGIF 396
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L +L G++H +++W D ++ +GDEV KV+ I+ EK +I+L IKQ
Sbjct: 397 VALS-----DNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQ 451
Query: 260 LEEDP 264
L +P
Sbjct: 452 LTPNP 456
>gi|407980900|ref|ZP_11161668.1| 30S ribosomal protein S1 [Bacillus sp. HYC-10]
gi|407412316|gb|EKF34135.1| 30S ribosomal protein S1 [Bacillus sp. HYC-10]
Length = 383
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S +H ++P + E G +
Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLAVDRDNERISLSIKETLPGPWSQIGEKVQQGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I +++L EG V+VKV+ ++ ++ RI+LSI++LEE+P
Sbjct: 294 PGVEGLVHISQISHKHIGTPQEVLEEGQTVKVKVLDVNEDEERISLSIRELEENP 348
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHYVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNK-------YSSRVNVEDIFVGR-----DY 197
G +S+ V++ + E +++ S + V + + ++ V + G+ D+
Sbjct: 142 DYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL H++ L H ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGLVHISQLSHAH------VEKPSDVVEEGQEVKVKVLAVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|431794256|ref|YP_007221161.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784482|gb|AGA69765.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 661
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 36/216 (16%)
Query: 68 NPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP 127
NP+L + R++ ++AD + Y E+ +GK+ GGL+V + GF+P
Sbjct: 361 NPLL------SKRRADEFAAAD--RLKEYAETKQEIQGKVAEVVKGGLIVDV-GMRGFVP 411
Query: 128 FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-- 185
Q+ P + E G + ++VI+ + +++V S+K+ + + + +
Sbjct: 412 ASQIQPGYV---------EDLNQFKGQTLRLRVIEFDPSKRRVVLSQKEILQEELAVKKE 462
Query: 186 -----VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
+ D+ G +GAFI L DGL +HVS++++ I+ + +N
Sbjct: 463 QLLGTLQEGDVISGTVKRLAQFGAFIDLGGVDGL------LHVSDIAYTRIKHPSEYVNV 516
Query: 236 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
GDEV V+V+K+D+E+ +I+L +KQL+ P LEK
Sbjct: 517 GDEVEVQVLKVDKEQGKISLGLKQLKPSPWENALEK 552
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + G ++ G + + G L ++ + K P + ++ G +
Sbjct: 469 QEGDVISGTVKRLAQFGAFIDLGGVDGLLHVSDIAYTR-IKHPSEYVN------VGDEVE 521
Query: 158 VKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V++ ++E K+ K + W + V + G+ +GAF+ L DG+
Sbjct: 522 VQVLKVDKEQGKISLGLKQLKPSPWENALEKYPVGALVTGKVVRLAPFGAFVQLE--DGV 579
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
LVH+S++S + + DI+ GD V+ K+I+ E+ RI+LSI+
Sbjct: 580 ---DALVHISQLSEKRVNKVEDIVTVGDMVQAKIIECKPEEKRISLSIR 625
>gi|410619280|ref|ZP_11330185.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
gi|410161174|dbj|GAC34323.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
Length = 579
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V ++ FLP + +
Sbjct: 108 REKAKRHEAWVELEKAYDDKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VRP 162
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVG 194
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 163 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLANLEEGHEV 217
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 218 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 271
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EKSR++L +KQ+ DP E E+ P+G
Sbjct: 272 KEKSRVSLGMKQMGNDPWQEIAER-YPEG 299
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K W
Sbjct: 324 GLVHVSEMDWTNKNIHPSKVVN------LGDTVEVMVLEIDEERRRISLGLKQCKPNPWE 377
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ + D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 378 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYK 432
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE+ V+++D E+ RI+L +KQ+EEDP + L
Sbjct: 433 KGDEISAVVLQVDPERERISLGVKQIEEDPFNQYL 467
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 197 EAESSAERDQLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K + W + + R G
Sbjct: 256 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNL 309
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 310 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 364 ISLGLKQCKPNPWEE 378
>gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
Length = 662
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 28/164 (17%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGLLV + GF+P Q+ P Q G + +++I+ +E KKLV
Sbjct: 397 GGLLVDL-GMRGFVPASQIQPDFVADLNQ---------FVGQTLRLRIIEFDEGKKKLVL 446
Query: 173 S-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E++ K + + D+ G D+GAFI L DGL +HVS+
Sbjct: 447 SQKAILAEEREQEKEKLFATIKEGDVVQGVVRRLTDFGAFIDLGGVDGL------LHVSD 500
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+++ + + DI+N GDEV V++I +D+ K RI+L +KQL+ +P
Sbjct: 501 MAFSRVSNPSDIVNIGDEVEVQIISVDQSKGRISLGLKQLKTNP 544
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAF+ L DG+ L+H+S+++ + + +++ GD + K+I+ E+ RI+LS
Sbjct: 568 FGAFVQLE--DGI---DALIHISQLADRRVGKVDEVVKIGDVIEAKIIECKPEEKRISLS 622
Query: 257 IKQLEED 263
I++L D
Sbjct: 623 IRELIAD 629
>gi|90021782|ref|YP_527609.1| 30S ribosomal protein S1 [Saccharophagus degradans 2-40]
gi|89951382|gb|ABD81397.1| SSU ribosomal protein S1P [Saccharophagus degradans 2-40]
Length = 560
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + WK A ++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRAESWKVLEAAHDAEEVITGVINGKVKGGFTVDVAGIRAFLPGSLVD----VRPV 141
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR------VNVEDIFVG 194
+++ H L G + KVI+ ++ +V S + AV + +S N+++
Sbjct: 142 RETTH-----LEGKELEFKVIKLDQRRNNVVVSRR-AVMEQANSEEREELLANLQEGMAV 195
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIDVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 250 RERNRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K + G + V ++ +EE +++ K + W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVS------LGDEVEVMILDIDEERRRISLGIKQCQENPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+S++ D G+ D+G FI L DG + GLVH+S++SW+ + +R
Sbjct: 356 AFSNQFAKGDKISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRK-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ ID E+ RI+L +KQL+EDP
Sbjct: 410 KKGDEIETVVLAIDPERERISLGVKQLDEDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G I
Sbjct: 190 QEGMAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIV------AVGDEID 242
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
VKV++ + E ++ K A+ +Y V+ DYG F +
Sbjct: 243 VKVLKFDRERNRVSLGLKQLGEDPWSAITQRYPEGAKVKARITNLTDYGCFAEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I +++ GDEV V ++ ID E+ RI+L IKQ +E+P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDEVEVMILDIDEERRRISLGIKQCQENP 353
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+TG + SE+S D ++D R++L EGDEV K+ +DR+ I LS+K
Sbjct: 474 ITGTLKASEISRDKVEDARNVLKEGDEVEAKITNVDRKNRAIILSVK 520
>gi|295698418|ref|YP_003603073.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
gi|291157307|gb|ADD79752.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
Length = 554
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 49 LCPVGKFSTNAAKITPT---TVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
P+G+F + KI TV+ IL+ D SR A A + + +
Sbjct: 47 FVPIGQFKDSKGKIEVNIGDTVDVILETIEDGFGETVVSREKAKRNAIWTFLKESYSGGK 106
Query: 106 KIQGF----NGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
KI G GG V + FLP P + + L G I K+I
Sbjct: 107 KISGIITEKVKGGFAVEIEGIRAFLPGSLFDV-----RPIRDFS--SNNLEGKEIEFKII 159
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNV-EDIFVG----------RDYGAFIHLRFPDGL 209
+ ++ +V S K + ++ ++ R+++ E + G DYGAFI L DGL
Sbjct: 160 KLDQRRNNIVVSRKAIIESENNNDRISLLESLKEGIEVPGIVKNLTDYGAFIDLGGVDGL 219
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T ++SW ++ +I+ GD ++VKV+K D++KSR++L +KQL DP L
Sbjct: 220 LHIT------DISWKRVKHPSEIVKIGDNIKVKVLKFDKDKSRVSLGLKQLGIDPWKGIL 273
Query: 270 EKVIP 274
EK P
Sbjct: 274 EKYSP 278
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I V ++ +E+ +++ K W ++S + D G+ D+G FI L
Sbjct: 327 GEEIKVMILDIDEKRRRISLGLKQCQPNPWKQFSEAHSKNDRVEGKIKSITDFGIFIELN 386
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH S+VSWD + + +GD + V+++D E+ RI+L IKQL ED
Sbjct: 387 -----GGIDGLVHSSDVSWDNSYEEESVKYKKGDLISAVVLQVDFERERISLGIKQLSED 441
Query: 264 PL 265
P+
Sbjct: 442 PI 443
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + + GLVHVSE+ W ++I I+N G+E++V ++ ID ++ RI
Sbjct: 291 DYGCFVEIE-----EGIEGLVHVSEIDWTK-RNIHPSKIVNIGEEIKVMILDIDEKRRRI 344
Query: 254 TLSIKQLEEDP 264
+L +KQ + +P
Sbjct: 345 SLGLKQCQPNP 355
>gi|424864387|ref|ZP_18288291.1| 30S ribosomal protein S1 [SAR86 cluster bacterium SAR86B]
gi|400759816|gb|EJP73997.1| 30S ribosomal protein S1 [SAR86 cluster bacterium SAR86B]
Length = 420
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 40/241 (16%)
Query: 49 LCPVGKFSTNAAKI-------TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGF 101
+ P+ +F N ++ + + D + + ++R + WK E+G
Sbjct: 32 VIPLDEFRNNKGEVDVEVGAEVQVALEAVEDGYGETRISREKARKISTWKMLEEALETGE 91
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
GKI GG V + FLP + P + + +I E K
Sbjct: 92 FVTGKILNRVKGGFAVEVDVVKAFLPGSLVDVRPVKEAPDIENTIQEF-----------K 140
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DIFVG-----RDYGAFIHLRFP 206
VI+ + + +V S K AV K +S + VE I G DYGAFI L
Sbjct: 141 VIKLDYKRNNVVLSRK-AVLEKNNSEIKVELLKNLEEGQIVKGIVKNITDYGAFIDLG-- 197
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
L GL+H++++SW + + + L G+E+ VKV+ D+EK R++L +KQ+ DP
Sbjct: 198 ----GLDGLLHITDLSWSRVPNPSEFLKLGEEIDVKVLSFDKEKLRVSLGLKQIHNDPWT 253
Query: 267 E 267
E
Sbjct: 254 E 254
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I +G ++ G + L G L +S S + P S E K G I
Sbjct: 175 EEGQIVKGIVKNITDYGAFIDLGGLDGLLHITDLSWS---RVPNPS--EFLK--LGEEID 227
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ ++E ++ K + W + S+ +V ++ DYG F L DG+
Sbjct: 228 VKVLSFDKEKLRVSLGLKQIHNDPWTEIESKYSVGGVYEAEVSNIADYGCFAQLE--DGI 285
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
GL+H+SE+ W ++I ++ +++V +++ID EK RI+L +KQ + +P +E
Sbjct: 286 ---EGLIHLSELDW-TSKNIHPSKVVEMNQKIKVMILEIDYEKRRISLGLKQTKSNPWVE 341
>gi|375131462|ref|YP_004993562.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
gi|315180636|gb|ADT87550.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
Length = 556
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDASLILSIGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEEDPLLETLEKVIPQ 275
K +E E + + Q
Sbjct: 520 KAKDEAEEQEAMASINKQ 537
>gi|410625445|ref|ZP_11336230.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
gi|410155041|dbj|GAC22999.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
Length = 579
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V ++ FLP + +
Sbjct: 108 REKAKRHEAWVELEKAYDDKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VRP 162
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVG 194
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 163 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLANLEEGHEV 217
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 218 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 271
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EKSR++L +KQ+ DP E E+ P+G
Sbjct: 272 KEKSRVSLGMKQMGNDPWQEIAER-YPEG 299
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K W
Sbjct: 324 GLVHVSEMDWTNKNIHPSKVVN------LGDTVEVMVLEIDEERRRISLGLKQCKPNPWE 377
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ + D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 378 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYK 432
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE+ V+++D E+ RI+L +KQ+EEDP + L
Sbjct: 433 KGDEISAVVLQVDPERERISLGVKQIEEDPFNQYL 467
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 197 EAESSAERDQLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K + W + + R G
Sbjct: 256 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNL 309
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 310 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 364 ISLGLKQCKPNPWEE 378
>gi|407795535|ref|ZP_11142493.1| 30S ribosomal protein S1 [Salimicrobium sp. MJ3]
gi|407019876|gb|EKE32590.1| 30S ribosomal protein S1 [Salimicrobium sp. MJ3]
Length = 380
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 20/174 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
ESG + EG +Q G V + G + Q+S H K + E G IS
Sbjct: 186 ESGQVVEGTVQRLTDFGAFVNLGGIDGLVHISQLSHEHVSK-ASDVVEE------GQKIS 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ W +V+ D+ G ++GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSLKETQPGPWENIGDKVSQGDVLEGTVQRLVNFGAFVEV-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+S++S I + +++L EG+ V VKV+ +D + R++LSIK+L+ED
Sbjct: 294 PGVEGLVHISQISTRHIANPQEVLEEGETVNVKVLDVDENQKRLSLSIKELDED 347
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ I+ ++Q GGL+V L GF+P + + E +
Sbjct: 92 WEDLETKYENEEIFNAEVQDVVKGGLVVDI-GLRGFIPASLVETYYV---------EDFE 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV-WNKYSSRVNV-EDIFVGR----------DY 197
G +S+KV++ + E +++ S + V + + NV + + G+ D+
Sbjct: 142 DYKGKELSLKVVELDREQNRVILSHRAVVEGEEKEQKQNVLQSLESGQVVEGTVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF++L DGL VH+S++S + + D++ EG ++ VKV+ +DR+ RI+LS+
Sbjct: 202 GAFVNLGGIDGL------VHISQLSHEHVSKASDVVEEGQKISVKVLSVDRDNERISLSL 255
Query: 258 KQLEEDP 264
K+ + P
Sbjct: 256 KETQPGP 262
>gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|419820553|ref|ZP_14344163.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|388475369|gb|EIM12082.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
Length = 382
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSQIGEKVKKGDVLEGKVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG +V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEGEERISLSMRELEEAP 348
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 99/195 (50%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++ K
Sbjct: 92 WEDLEEKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVEDFTD-----YK 144
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G T ++I V++ + + +++ S + V + +++ + V + G+ D+
Sbjct: 145 GRTLTLI---VVELDRDKNRVILSHRAVVEKEQTNKKQEFLQTLEVGSVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|374619390|ref|ZP_09691924.1| ribosomal protein S1 [gamma proteobacterium HIMB55]
gi|374302617|gb|EHQ56801.1| ribosomal protein S1 [gamma proteobacterium HIMB55]
Length = 568
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + G I G GG V S+ FLP +
Sbjct: 96 SREKAKRAEA-WKTLEAAHVAQEVVIGVINGKVKGGFTVDVDSIRAFLPGSLIDV----- 149
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ I E A L G + KVI+ +++ +V S E+D + +
Sbjct: 150 ---RPIRETAH-LEGKELEFKVIKLDQKRNNVVVSRRAVMEAANSAERDELLQNLQEGQS 205
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ + DYGAF+ L DGL H+T +++W I+ +++ G E+ VKV+K
Sbjct: 206 VKGVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEVVEVGQEMDVKVLKF 259
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP +E + P+G
Sbjct: 260 DRERNRVSLGLKQLGEDPWVEITNR-YPEG 288
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G +
Sbjct: 201 QEGQSVKGVVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEVVE------VGQEMD 253
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
VKV++ + E ++ K + N+Y SRVN I DYG F +
Sbjct: 254 VKVLKFDRERNRVSLGLKQLGEDPWVEITNRYPEGSRVNAR-ITNLTDYGCFAEIE---- 308
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ I+N GDEV V V+ ID+E+ RI+L IKQ +++P
Sbjct: 309 -EGVEGLVHVSEMDW-TNKNVHPSKIVNLGDEVEVMVLDIDQERRRISLGIKQCQQNP 364
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ ++E +++ K W+
Sbjct: 313 GLVHVSEMDWTNKNVHPSKIVN------LGDEVEVMVLDIDQERRRISLGIKQCQQNPWD 366
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S+ D G D+G FI L ++ GLVH+S++SW+ + +R+
Sbjct: 367 AFASQHATGDKISGSIKSITDFGIFIGL-----AGNIDGLVHLSDISWNETGEEAVRN-Y 420
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L IKQLEED
Sbjct: 421 KKGDEIETVILSIDPERERISLGIKQLEEDSF 452
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G + V+++S D ++D R +LN GD+V K++ IDR+ I LSIK + D E ++
Sbjct: 484 EVDGYIKVADLSRDRVEDARSVLNVGDKVEAKIVNIDRKSRSIGLSIKAKDMDDEKEAVQ 543
Query: 271 KVIPQ 275
+ Q
Sbjct: 544 SLKDQ 548
>gi|332306876|ref|YP_004434727.1| 30S ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410640736|ref|ZP_11351266.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
gi|410648186|ref|ZP_11358600.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410132205|dbj|GAC06999.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
gi|410139764|dbj|GAC09453.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
Length = 579
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V ++ FLP + +
Sbjct: 108 REKAKRHEAWVELEKAYDDKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VRP 162
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVG 194
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 163 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLANLEEGHEV 217
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 218 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 271
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EKSR++L +KQ+ DP E E+ P+G
Sbjct: 272 KEKSRVSLGMKQMGNDPWQEIAER-YPEG 299
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 197 EAESSAERDQLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K + W + + R G
Sbjct: 256 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNL 309
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 310 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 364 ISLGLKQCKPNPWEE 378
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + G GKI+ G+ + G +S K + ++ E K
Sbjct: 376 WEEFAKAQSKGDKVSGKIKSITDFGIFIGLDG--GIDGLVHLSDISWNKTGEDAVREYKK 433
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFI 201
G IS V+Q + E +++ K + +N+Y + I VG G +
Sbjct: 434 G---DEISAVVLQVDPERERISLGVKQIEEDPFNQYLTDTKKGTIVVGTVTEVDAKGVTV 490
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L + G + V++++ + ++D ++ + GDE+ K + +DR+ + LS+K +
Sbjct: 491 KL-----AEEVEGYIRVTDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVKAKD 545
Query: 262 EDPLLETLEKVIPQ 275
+ E L+KV Q
Sbjct: 546 QADEKEALDKVNQQ 559
>gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c]
Length = 579
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V ++ FLP + +
Sbjct: 108 REKAKRHEAWVELEKAYDDKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VRP 162
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVG 194
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 163 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLANLEEGHEV 217
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 218 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 271
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EKSR++L +KQ+ DP E E+ P+G
Sbjct: 272 KEKSRVSLGMKQMGNDPWQEIAER-YPEG 299
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K W
Sbjct: 324 GLVHVSEMDWTNKNIHPSKVVN------LGDTVEVMVLEIDEERRRISLGLKQCKPNPWE 377
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ + D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 378 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYK 432
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE+ V+++D E+ RI+L +KQ+EEDP + L
Sbjct: 433 KGDEISAVVLQVDPERERISLGVKQIEEDPFNQYL 467
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 197 EAESSAERDQLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 255
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K + W + + R G
Sbjct: 256 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNL 309
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 310 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 364 ISLGLKQCKPNPWEE 378
>gi|88798958|ref|ZP_01114539.1| 30S ribosomal protein S1 [Reinekea blandensis MED297]
gi|88778185|gb|EAR09379.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
Length = 560
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 28/201 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AY E+ + +G I G GG V S+ FLP + +
Sbjct: 85 SREKAKRAEAWAELEKAY-EAKEVVKGVINGKVKGGFTVDVSSVRAFLPGSLVD----IR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR- 195
+ ++H L G + KVI+ ++ +V S + + S+ +E++ G+
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQRRNNVVVSRRAVLEASNSAEREELLENLQEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K
Sbjct: 195 IKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVQVGDEIDVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLE 267
DRE++R++L +KQL EDP ++
Sbjct: 249 DRERNRVSLGLKQLGEDPWVD 269
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G I V V+ +EE +++ K V W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEIEVMVLDIDEERRRISLGIKQTVVNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+++R N D G+ D+G FI L + GLVH+S++SW+ + +R
Sbjct: 356 DFANRYNKSDKVSGKIKSITDFGIFIGLE-----GGIDGLVHLSDISWNESGEEAVRK-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ ID E+ RI+L IKQL+ DP E
Sbjct: 410 KKGDELETTILSIDPERERISLGIKQLDMDPFAE 443
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ SE+S D ++D R++LNEG+EV K++ IDR+ I+LSIK
Sbjct: 474 IEGVLKASEISRDKVEDARNVLNEGEEVEAKIVSIDRKNRVISLSIK 520
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G I
Sbjct: 190 QEGQEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVQ------VGDEID 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W +R E + DYG F L
Sbjct: 243 VKVLKFDRERNRVSLGLKQLGEDPWVDIKARYPEEAKVTAKVTNLTDYGCFAELE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++ GDE+ V V+ ID E+ RI+L IKQ +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEIEVMVLDIDEERRRISLGIKQTVVNP 353
>gi|384158705|ref|YP_005540778.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
gi|384167767|ref|YP_005549145.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens XH7]
gi|328552793|gb|AEB23285.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
gi|341827046|gb|AEK88297.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens XH7]
Length = 378
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 182 EVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 234
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 235 VKVLSVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGKVQRLVSFGAFVEI-----L 289
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 290 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESEERISLSMRELEEAP 344
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 44 ICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQ------SRSSAD----WKAA 93
+ Q + P+ + S+ + VN +DD D + + S+ + D W+
Sbjct: 38 VKQSGIIPISELSSLHVEKASDVVN--VDDELDLKVTKVEDDALILSKRAVDADRAWEDL 95
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTG 153
E+ ++E +++G GL+V + GF+P + +H ++ G
Sbjct: 96 EKKFETKEVFEAEVKG----GLVVDI-GVRGFIP-ASLVEAHFVED--------FTDYKG 141
Query: 154 SIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFI 201
+S+ V++ + + +++ S + V + +++ + V + G+ D+GAF+
Sbjct: 142 KTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFV 201
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSIK+
Sbjct: 202 DIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSIKETL 255
Query: 262 EDPLLETLEKV 272
P + EKV
Sbjct: 256 PGPWSQIGEKV 266
>gi|365538375|ref|ZP_09363550.1| 30S ribosomal protein S1 [Vibrio ordalii ATCC 33509]
Length = 556
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTTH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
>gi|260768940|ref|ZP_05877874.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
gi|260616970|gb|EEX42155.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
Length = 556
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEEDPLLETLEKVIPQ 275
K +E E + + Q
Sbjct: 520 KAKDEAEEQEAMASINKQ 537
>gi|336124541|ref|YP_004566589.1| 30S ribosomal protein S1P [Vibrio anguillarum 775]
gi|335342264|gb|AEH33547.1| SSU ribosomal protein S1P [Vibrio anguillarum 775]
Length = 556
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTTH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
>gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
Length = 419
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 27/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG++ + + F+P Q+S + K ++E K I+V++++ NE+ +K+V
Sbjct: 135 GGVIASYKGVRIFVPASQVSDRYV-----KDLNEFLK----RSITVRILELNEKRRKVVG 185
Query: 173 S-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S EK+A+ N+ + + V +F G D+GAF+ + DGL +H+SE
Sbjct: 186 SARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGVDGL------IHISE 239
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+SW ++ ++L GDEV V V++ D+EK +++L +++E++P + EK
Sbjct: 240 LSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEK 290
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G +++G ++ G V + G + ++S + K P + + G +
Sbjct: 207 EVGKVFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTR-VKHPSEVLK------VGDEVE 259
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF---VGR--DYGAFIHLRFPDGL 209
V V++ ++E KK+ + D W K + V D+ V R +GAF+ L
Sbjct: 260 VTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELE----- 314
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GLVH+S++S + + D L G +V K+I++D E +I+LSIK++
Sbjct: 315 KGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEV 365
>gi|407452560|ref|YP_006724285.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-CH-1]
gi|403313544|gb|AFR36385.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-1]
Length = 610
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 48/250 (19%)
Query: 42 ERICQRNLCPVGKFSTNAAKITPT-----TVNPILDDSSDANNR----QSQSRSSADWKA 92
E I + G S N + P+ V ++D D + ++R+ W
Sbjct: 87 EAIVDIDFKSEGVISLNEFRYNPSLKVGDEVEVMVDRREDKTGQLQLSHKKARTLKAWDK 146
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
Y ESG + G ++ GG++V F + FLP Q+ +P K +
Sbjct: 147 VNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQIDV-----KPIKDYDQ----YV 197
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED-------------IFVGR---- 195
G + KV++ N E K +V S K + ++ED + G
Sbjct: 198 GKTMEFKVVKINPEFKNVVVSHKALI------EADIEDQKKEIIAQLEKGQVLEGTVKNI 251
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
YG FI L DGL VH++++SW + +IL +G V+V ++ D +K+RI
Sbjct: 252 TSYGVFIDLGGVDGL------VHITDLSWSRVNHPTEILEDGQTVKVVILDFDEDKTRIQ 305
Query: 255 LSIKQLEEDP 264
L +KQLE P
Sbjct: 306 LGMKQLEAHP 315
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + EG ++ G+ + + G + +S S P + + + G
Sbjct: 236 AQLEKGQVLEGTVKNITSYGVFIDLGGVDGLVHITDLSWSR-VNHPTEILED------GQ 288
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+ V ++ +E+ ++ K W+ + V D G+ DYGAF+ + P
Sbjct: 289 TVKVVILDFDEDKTRIQLGMKQLEAHPWDALDENLKVGDKVKGKVVVLADYGAFVEVA-P 347
Query: 207 DGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+SW ++ D + GDEV +V+ +D+E+ +I+L +KQL EDP
Sbjct: 348 ----GVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEERKISLGMKQLSEDP 402
>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
Length = 403
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ ++ D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATADLHEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|374314235|ref|YP_005060664.1| 30S ribosomal protein S1 [Serratia symbiotica str. 'Cinara cedri']
gi|363988461|gb|AEW44652.1| 30S ribosomal protein S1 [Serratia symbiotica str. 'Cinara cedri']
Length = 561
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY+ + G I G GG V + FLP + +
Sbjct: 89 REKAKRHEAWITLEKAYEGVETVL-GVINGKVKGGFTVELNGIRAFLPGSLVD----VRP 143
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ ++H L G + KVI+ +++ +V S E+D + + V
Sbjct: 144 VRDTLH-----LEGRELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQESMEV 198
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
I DYGAF+ L DGL H+T +++W ++ +I+N GDEV VK++K D
Sbjct: 199 RGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPTEIVNVGDEVTVKILKFD 252
Query: 248 REKSRITLSIKQLEEDP 264
RE++R++L +KQL EDP
Sbjct: 253 RERTRVSLGLKQLGEDP 269
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y ES + G++ G V V G + +M ++ P K ++
Sbjct: 270 WVAIAKHYPESTTLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 326
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G + V V+ +EE +++ K W +++ N D G+ D+G
Sbjct: 327 ----VGDFVEVMVLDIDEERRRISLGLKQCKPNPWQQFADSHNKGDHVEGKIKSITDFGI 382
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L I
Sbjct: 383 FIGL---DG--GIDGLVHLSDISWNVSGEDAVRD-YKKGDEIAAVVLQVDAERERISLGI 436
Query: 258 KQLEEDPL 265
KQL EDP
Sbjct: 437 KQLAEDPF 444
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G ++VK+++ +
Sbjct: 200 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPTEIVN------VGDEVTVKILKFD 252
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
E ++ K + W + GR DYG F+ + + GLV
Sbjct: 253 RERTRVSLGLKQLGEDPWVAIAKHYPESTTLTGRVTNLTDYGCFVEIE-----EGVEGLV 307
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
HVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 308 HVSEMDW-TNKNIHPSKVVNVGDFVEVMVLDIDEERRRISLGLKQCKPNP 356
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + S ++ + +
Sbjct: 357 WQQFADSHNKGDHVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVSGEDAVRDYKK-- 414
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G I+ V+Q + E +++ K +N Y S +I G+ GA
Sbjct: 415 ----GDEIAAVVLQVDAERERISLGIKQLAEDPFNNYLSMNKKGNIVTGKVTAVETKGAT 470
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + + G + SEVS + ++D +LN GD V K I +DR+ ++LSI+
Sbjct: 471 VEL-----VGGVEGYLRASEVSRNRVEDTTLVLNVGDAVEAKFIGVDRKNRIVSLSIRAK 525
Query: 261 EE 262
+E
Sbjct: 526 DE 527
>gi|260773187|ref|ZP_05882103.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
gi|260612326|gb|EEX37529.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
Length = 556
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P +F A ++ + V+ LD D SR A A +AY+E+
Sbjct: 48 IPAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + + H L + KVI
Sbjct: 108 VI-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRPIRDTAH-----LENKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L +KQL EDP + +
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWV-AI 270
Query: 270 EKVIPQG 276
K P+G
Sbjct: 271 AKRYPEG 277
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVDVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
>gi|153814341|ref|ZP_01967009.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
gi|317500055|ref|ZP_07958290.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087715|ref|ZP_08336641.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438143|ref|ZP_08617784.1| hypothetical protein HMPREF0990_00178 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848737|gb|EDK25655.1| S1 RNA binding domain protein [Ruminococcus torques ATCC 27756]
gi|316898540|gb|EFV20576.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409696|gb|EGG89132.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015187|gb|EGN45011.1| hypothetical protein HMPREF0990_00178 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 239
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 38/232 (16%)
Query: 56 STNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGL 115
+ AA T T+ D DAN W Y E + K++G GG+
Sbjct: 17 TEEAAASTTETMADYEDHFDDAN----------PWNLVTKYMEEKTVLPVKVEGVVNGGV 66
Query: 116 LVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
+V L GF+P ++S S+ I ++ L I V+VI A++ +LV S +
Sbjct: 67 IVMIEGLRGFVPASKLSLSY--------IEDLETYLLKEI-EVQVIDADQANNRLVLSAR 117
Query: 176 DAVWNKYS-------SRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+ + K + + + ++ G ++YGAFI L L+GLVHVS++S
Sbjct: 118 ELLKEKEKKAREDQIANLKIGEVLEGTVETLQNYGAFIKLD-----NGLSGLVHVSQISQ 172
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
++ D+LN GD+V VKVI I + +I+LS+K LEE T + VIP+
Sbjct: 173 KRVKLPSDVLNAGDKVTVKVIGI--KDGKISLSMKALEEVKEEPTEKVVIPK 222
>gi|334341469|ref|YP_004546449.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
ruminis DSM 2154]
gi|334092823|gb|AEG61163.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
ruminis DSM 2154]
Length = 671
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 38/232 (16%)
Query: 74 SSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFP 129
S D R S+ AD W E G I +G ++ GGLLV + F+P
Sbjct: 354 SEDNEGRLILSKERADAEKAWGGLEEAMEKGTIIQGTVREVVKGGLLVDV-GVRAFMPAS 412
Query: 130 QMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE 189
+ + + +++K L ISV+VI+ N++ KK+V S K + +Y+ +
Sbjct: 413 LVDRGY--------VEDLSKYLN-EKISVRVIEMNKQRKKVVISRKAVLEEEYARKREEL 463
Query: 190 DI----------FVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
V R +GAF+ L L GL+H+SE+SW I +++ GD
Sbjct: 464 LETLEEGQTVKGIVRRLTQFGAFVDL------GGLDGLLHISEMSWHRINHPSEVVKAGD 517
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMV 289
E+ V V+K+DRE +I+L +KQ+ +P EK P K F K+V
Sbjct: 518 ELEVMVLKVDRENEKISLGLKQILPNPWDNIEEKY------PVDKVFPAKVV 563
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G +G ++ G V L G L +MS H P + + G + V
Sbjct: 470 GQTVKGIVRRLTQFGAFVDLGGLDGLLHISEMS-WHRINHPSEVVK------AGDELEVM 522
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ + E +K+ K + W+ + V+ +F + +GAF+ L
Sbjct: 523 VLKVDRENEKISLGLKQILPNPWDNIEEKYPVDKVFPAKVVRLASFGAFVQLE-----PG 577
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GLVH+S ++ + +++ EG+EV VKV+ +D + RI LSI+++
Sbjct: 578 VEGLVHISHLADRHVAKPDEVVREGEEVNVKVLSVDPVEKRIRLSIREV 626
>gi|119505043|ref|ZP_01627119.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
HTCC2080]
gi|119459025|gb|EAW40124.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
HTCC2080]
Length = 557
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + G I G GG V S+ FLP + +
Sbjct: 85 SREKAKRAEA-WKRLEAAHVADEVVTGIINGKVKGGFTVDIESIRAFLPGSLID----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+++ H L G + KVI+ +++ +V S E++ + ++
Sbjct: 140 PVRETTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVMEAANSQEREELLENLQEGMS 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ + DYGAF+ L DGL H+T +++W I+ +I+ G E+ VK++K
Sbjct: 195 VKGVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQEMDVKILKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP +E + P+G
Sbjct: 249 DRERNRVSLGLKQLGEDPWVEITNR-YPEG 277
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +E+ +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVQ------LGDEVEVMVLDIDEDRRRISLGIKQCTQNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S D G D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 356 AFASDHAKGDRISGTIKSITDFGIFIGL---DGA--IDGLVHLSDISWNETGEEAVRN-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L +KQ+EED
Sbjct: 410 KKGDEIETVILSIDPERERISLGVKQMEEDAF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G +
Sbjct: 190 QEGMSVKGVVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVE------VGQEMD 242
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
VK+++ + E ++ K + N+Y +RVN + + DYG F +
Sbjct: 243 VKILKFDRERNRVSLGLKQLGEDPWVEITNRYPEGARVNAK-VTNLTDYGCFAEIE---- 297
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ I+ GDEV V V+ ID ++ RI+L IKQ ++P
Sbjct: 298 -EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEDRRRISLGIKQCTQNP 353
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L ++G + V ++S + I+D R ++N GD V K+ +DR+ + LSI
Sbjct: 465 GALIKLS-----DEVSGYLKVGDISVERIEDARSVINVGDSVEAKITNVDRKNRTLGLSI 519
Query: 258 K---QLEEDPLLETLEK 271
K +E +ETL++
Sbjct: 520 KAKDMADEKEAVETLKQ 536
>gi|386286363|ref|ZP_10063553.1| 30S ribosomal protein S1 [gamma proteobacterium BDW918]
gi|385280513|gb|EIF44435.1| 30S ribosomal protein S1 [gamma proteobacterium BDW918]
Length = 560
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A W A E+ G I G GG V S+ FLP + +
Sbjct: 85 SREKAKRAEA-WTTLEAAYEAEETVIGIINGKVKGGFTVDINSIRAFLPGSLV----DVR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ +++ +V S E++A+ +
Sbjct: 140 PVRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVLESVNSEEREALLESLQEGMI 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+N GDE+ V+++K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVRILKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERNRVSLGLKQLGEDP 266
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V ++ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------VGDEVEVMILDIDEERRRISLGIKQCQQNPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+ + D G D+G FI L DG ++ GLVH+S++SW+ + +R
Sbjct: 356 AFGGQFTKGDKIKGAIKSITDFGIFIGL---DG--NIDGLVHLSDISWNETGEEAVRK-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L IKQLE+DP
Sbjct: 410 KKGDEIETVILSIDPERERISLGIKQLEDDPF 441
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGMIVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSEIVN------VGDEID 242
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
V++++ + E ++ K A+ +Y +SRV + + DYG F +
Sbjct: 243 VRILKFDRERNRVSLGLKQLGEDPWVAIKGRYPENSRVKAK-VTNLTDYGCFAEIE---- 297
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ +++P
Sbjct: 298 -EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMILDIDEERRRISLGIKQCQQNP 353
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ G++ SE+S D ++D R++L G+ V VK+I +DR+ +TLSIK + D E +
Sbjct: 473 EVEGVLKASEISRDKVEDARNVLKVGETVEVKIISVDRKNRAMTLSIKAKDVDDEKEAV 531
>gi|261855929|ref|YP_003263212.1| 30S ribosomal protein S1 [Halothiobacillus neapolitanus c2]
gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
Length = 560
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 32/200 (16%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHS 136
+R+ R+ A W A ++ I G+I G GG V + FLP + P
Sbjct: 88 SREKALRARA-WTALEKSFKNEEIVTGRITGKVKGGFTVEMGEIRAFLPGSLVDVRPIRD 146
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-----VEDI 191
L G + K+I+ +++ +V S + V +YS+ + +++
Sbjct: 147 TTY-----------LEGKDVEFKIIKLDQKRNNVVVSRRAVVEQEYSAERDALLDQLQEG 195
Query: 192 FVGR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
V R DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+
Sbjct: 196 MVLRGVVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSEVVNIGDEVDVKVL 249
Query: 245 KIDREKSRITLSIKQLEEDP 264
K DR+++R++L +KQ+ EDP
Sbjct: 250 KFDRDRNRVSLGMKQMGEDP 269
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + V G + +M ++ P K + G + V ++
Sbjct: 285 GKVTNLTDYGCFVEIDNGVEGLVHVSEMDWTNKNVNPGKVVS------VGDEVEVMILDI 338
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W+ +++ D G+ D+G FI L DG + GL
Sbjct: 339 DEERRRISLGMKQCQANPWDAFAASHQKGDKVSGQIKSITDFGVFIGL---DG--GIDGL 393
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+H+S++SW+ + +R +G+E+ VI ID E+ RI+L +KQLE DP+
Sbjct: 394 IHLSDLSWNEAGEEAVRQ-FKKGEEIEAVVIAIDPERERISLGLKQLESDPI 444
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + G ++ G + + G L M+ K P + ++ G +
Sbjct: 193 QEGMVLRGVVKNLTDYGAFLDLGGIDGLLHITDMAWKR-VKHPSEVVN------IGDEVD 245
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + + ++ K + W+ + R + G+ DYG F+ +
Sbjct: 246 VKVLKFDRDRNRVSLGMKQMGEDPWSDLARRFPISSRMFGKVTNLTDYGCFVEID----- 300
Query: 210 YHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W + + +++ GDEV V ++ ID E+ RI+L +KQ + +P
Sbjct: 301 NGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLGMKQCQANP 356
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + S++S D I D R +L EGD V KV+ +DR+ ++LSI+ + E +E+
Sbjct: 477 VEGYLRASDISRDRIDDARTVLKEGDAVEAKVMGVDRKNRMVSLSIRAKDSQEESEAMEE 536
Query: 272 V 272
+
Sbjct: 537 L 537
>gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM
7]
gi|384164854|ref|YP_005546233.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens DSM 7]
gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
Length = 382
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGKVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESEERISLSMRELEEAP 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 118/251 (47%), Gaps = 40/251 (15%)
Query: 44 ICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQ------SRSSAD----WKAA 93
+ Q + P+ + S+ + VN +DD D + + S+ + D W+
Sbjct: 38 VKQSGIIPISELSSLHVEKASDVVN--VDDELDLKVTKVEDDALILSKRAVDADRAWEDL 95
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTG 153
E+ ++E +++ GGL+V + GF+P + +H ++ G
Sbjct: 96 EKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FTDYKG 145
Query: 154 SIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFI 201
+S+ V++ + + +++ S + V + +++ + V + G+ D+GAF+
Sbjct: 146 KTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFV 205
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSIK+
Sbjct: 206 DIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSIKETL 259
Query: 262 EDPLLETLEKV 272
P + EKV
Sbjct: 260 PGPWSQIGEKV 270
>gi|410447757|ref|ZP_11301849.1| putative ribosomal protein S1 [SAR86 cluster bacterium SAR86E]
gi|409979337|gb|EKO36099.1| putative ribosomal protein S1 [SAR86 cluster bacterium SAR86E]
Length = 435
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCK 138
+ ++R WK E+G EGK+ GG V + FLP + P
Sbjct: 86 REKARKIGTWKKLEEALETGEFVEGKVLTRVKGGFSVEVDVVKAFLPGSLVDIRPVKEAP 145
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------D 190
E + ++ E KVI+ + + +V S K AV K +S VE
Sbjct: 146 ELENTVQEF-----------KVIKLDYKRNNVVLSRK-AVLEKINSAEKVELLKNLDEGQ 193
Query: 191 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 245
I G DYGAF+ L DGL H+T ++SW + + ++L+ G E+ VK++
Sbjct: 194 IVKGVVKNLTDYGAFVDLGGLDGLLHIT------DISWSRVTNPSEVLSLGQEIDVKILS 247
Query: 246 IDREKSRITLSIKQLEEDPLLETLE 270
D+EK R++L +KQ++ DP ET+E
Sbjct: 248 FDKEKLRVSLGLKQIQNDP-WETIE 271
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G ++ G V L G L +S S P + + G I
Sbjct: 190 DEGQIVKGVVKNLTDYGAFVDLGGLDGLLHITDISWSR-VTNPSEVLS------LGQEID 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VK++ ++E ++ K + W + +V ++ DYG F L
Sbjct: 243 VKILSFDKEKLRVSLGLKQIQNDPWETIEGKYSVGGVYEATVSNLTDYGCFAELE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL+H+SE+ W ++I +++ ++++V V++ID +K RI+L +KQ + +P E
Sbjct: 298 QGVEGLIHLSELDW-TNKNIHPSKVVDLEEKIKVMVLEIDHDKRRISLGLKQTKPNPWTE 356
>gi|375362802|ref|YP_005130841.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384265885|ref|YP_005421592.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898896|ref|YP_006329192.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|394993524|ref|ZP_10386269.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|421731213|ref|ZP_16170339.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505676|ref|YP_007186860.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346526|ref|YP_007445157.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452856047|ref|YP_007497730.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|371568796|emb|CCF05646.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499238|emb|CCG50276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173006|gb|AFJ62467.1| small subunit ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|393805636|gb|EJD67010.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|407075367|gb|EKE48354.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487266|gb|AFZ91190.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850284|gb|AGF27276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452080307|emb|CCP22069.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 382
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGKVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESEERISLSMRELEEAP 348
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ ++ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V + +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42]
gi|385265263|ref|ZP_10043350.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42]
gi|385149759|gb|EIF13696.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
Length = 382
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSQVGEKVKQGDVLEGKVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESEERISLSMRELEEAP 348
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ ++ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V + +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQVGEKV 270
>gi|308049649|ref|YP_003913215.1| 30S ribosomal protein S1 [Ferrimonas balearica DSM 9799]
gi|307631839|gb|ADN76141.1| SSU ribosomal protein S1P [Ferrimonas balearica DSM 9799]
Length = 556
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +A +E + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWVRLEKAAEEQETVI-GVINGKVKGGFTVELEGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+ + H L G + KVI+ +++ +V S + + ++ S +E++ G+
Sbjct: 141 VRDTTH-----LEGKDLEFKVIKLDQKRNNVVVSRRAVIESENSVEREQLLENLAEGQEV 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + ++ P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWV-SIANRYPEG 277
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDSVEVMVLDIDEERRRISLGLKQCKANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ N D G+ D+G FI L + GLVH+S++SW+ +D
Sbjct: 356 EFARNFNKGDKVSGKIKSITDFGIFIGLE-----GGIDGLVHLSDISWNATGEDAVREYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+E+ V+ +D E+ RI+L +KQ+EEDP
Sbjct: 411 KGEEISAVVLSVDPERERISLGVKQIEEDPF 441
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I+VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEINVKVLKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
E ++ K + W ++R GR DYG F+ + + GLV
Sbjct: 250 RERTRVSLGLKQLGEDPWVSIANRYPEGAKLTGRVTNLTDYGCFVEIE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVNLGDSVEVMVLDIDEERRRISLGLKQCKANPWEE 356
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
++ G + V+++S D I+D +L+ G+ V K + +DR+ I+LSIK +E E ++
Sbjct: 473 NIEGYIRVADISRDRIEDASTVLSVGESVEAKFMGVDRKNRNISLSIKAKDEAEEKEAID 532
Query: 271 KVIPQ 275
+ Q
Sbjct: 533 ALNQQ 537
>gi|365875510|ref|ZP_09415038.1| 30S ribosomal protein S1 [Elizabethkingia anophelis Ag1]
gi|442588775|ref|ZP_21007585.1| 30S ribosomal protein S1 [Elizabethkingia anophelis R26]
gi|365756769|gb|EHM98680.1| 30S ribosomal protein S1 [Elizabethkingia anophelis Ag1]
gi|442561533|gb|ELR78758.1| 30S ribosomal protein S1 [Elizabethkingia anophelis R26]
Length = 594
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNR----QSQSRSSADWKAARAYKESGFIYE 104
+ + +F N V ++D D + + ++R+ W Y ESG I
Sbjct: 81 VISLNEFRYNQGLQVGDEVEVMVDRREDKSGQLQLSHKKARTLRAWDKVNEYHESGEIVN 140
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ GG++V F + FLP Q+ +P K + G + K+++ N
Sbjct: 141 GFVKSRTKGGMIVDVFGIEAFLPGSQIDV-----KPIKDYDQ----FVGKTMEFKIVKIN 191
Query: 165 EEMKKLVFSEK-----DAVWNKYSSRVNVE--DIFVGR-----DYGAFIHLRFPDGLYHL 212
E K +V S K D K +E + G YG FI L DGL
Sbjct: 192 HEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLEGTVKNITSYGVFIDLGGVDGL--- 248
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H++++SW + +IL +G V+V ++ D EK+RI L +KQLE P
Sbjct: 249 ---IHITDLSWSRVNHPSEILEDGQTVKVVILDFDDEKTRIQLGMKQLEAHP 297
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + EG ++ G+ + + G + +S S P + + + G
Sbjct: 218 AQLEKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWSR-VNHPSEILED------GQ 270
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+ V ++ ++E ++ K W+ + + V D G+ DYGAF+ + P
Sbjct: 271 TVKVVILDFDDEKTRIQLGMKQLEAHPWDALDANLKVGDKVKGKVVVLADYGAFVEIA-P 329
Query: 207 DGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GL+HVSE+SW ++ D + GDEV +V+ IDRE +I+L IKQL +DP
Sbjct: 330 G----VEGLIHVSEMSWSTHLRSAGDFVKIGDEVEAEVLTIDREDRKISLGIKQLTQDPW 385
Query: 266 LETLEK 271
EK
Sbjct: 386 ANIQEK 391
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G F+ L + GL+++S++SW I+ + N GD + V V+++D + RI+
Sbjct: 407 NFGVFVELE-----EGIDGLIYISDLSWTKKIKHPSEFCNVGDTLDVVVLELDLDNRRIS 461
Query: 255 LSIKQLEEDP 264
L KQL+E+P
Sbjct: 462 LGHKQLQENP 471
>gi|347521866|ref|YP_004779437.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|385833250|ref|YP_005871025.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|420143919|ref|ZP_14651407.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
gi|343180434|dbj|BAK58773.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|343182403|dbj|BAK60741.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|391855371|gb|EIT65920.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
Length = 407
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
K A A G I EG + G V + G + ++S + K P +
Sbjct: 186 KEAFAQLNEGDIVEGTVSRVTNFGAFVDLGGIDGLVHVSELS-HNRVKRPSDVVK----- 239
Query: 151 LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
G + VK+++ +EE +L S K W + + V G D+GAF+
Sbjct: 240 -PGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L FP + GLVHVS++SW+ +++ +D+L G V VKV+ + E+ RI+LSIK LEE
Sbjct: 299 L-FP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEE 353
Query: 263 DP 264
P
Sbjct: 354 AP 355
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + + GF+P M ++ K+ +K G I K+I+ N + +
Sbjct: 121 GGLSVDYNGVRGFIP-ASMIDTYFVKDTKK--------FVGQEIEAKIIEINASENRFIL 171
Query: 173 SEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + V + +++N DI G ++GAF+ L DGL VHVSE
Sbjct: 172 SRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDLGGIDGL------VHVSE 225
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+S + ++ D++ GD+V VK++K+D E R++LS+K + P E +E+ P G
Sbjct: 226 LSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGP-WEQVEEKAPVG 280
>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
Length = 402
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGKAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ ++ D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATANLSEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|403238099|ref|ZP_10916685.1| 30S ribosomal protein S1 [Bacillus sp. 10403023]
Length = 378
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG +Q G V + G + Q+S H K P + E G +I VK
Sbjct: 188 GAVLEGTVQRLTDFGAFVDIGGIDGLVHISQLSHEHVSK-PSDVVEE------GQVIKVK 240
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ + + +++ S K+ + W + +++V D+ G+ +GAF+ + L
Sbjct: 241 VLSVDRDNERISLSVKETLPGPWENIAEKISVGDVVDGKVKRLVSFGAFVEV-----LPG 295
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ GLVH+S++S I ++L EG EV+VKV++++ + RI+LS+K+LE
Sbjct: 296 VEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELE 345
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 86 SSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIH 145
+S W +G ++E ++ GGL+V + GF+P + +
Sbjct: 88 ASKAWDDLEQKFNTGEVFEAVVKDVVKGGLVVDL-GVRGFIPASLVENYYV--------- 137
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR--- 195
E ++VKV++ + E +++ S + V + ++ + V + G
Sbjct: 138 EDFSDYKDKALTVKVVELDREKNRVILSHRAVVEEEQKNKKQHVLDSLQVGAVLEGTVQR 197
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
D+GAF+ + DGL VH+S++S + + D++ EG ++VKV+ +DR+ RI
Sbjct: 198 LTDFGAFVDIGGIDGL------VHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERI 251
Query: 254 TLSIKQLEEDPLLETLEKV 272
+LS+K+ P EK+
Sbjct: 252 SLSVKETLPGPWENIAEKI 270
>gi|146329586|ref|YP_001209043.1| 30S ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
Length = 558
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 27/194 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ A S I +G + G GG V + FLP + K+P +I E
Sbjct: 96 WEILEAKFASEEIIKGIVSGRVKGGFTVDVEGVKAFLP-GSLVDVRPVKDP--AIVE--- 149
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVGR-------DY 197
G I K+I+ +++ +V S + + ++Y + N+++ V + DY
Sbjct: 150 ---GKEIEFKIIKLDQKRNNIVVSRRAVIEHEYKAEREEVLQNLQEGDVVKAVVKNLTDY 206
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ L DGL H+T +++W I+ +++N GDEV VKV+K DRE++R++L +
Sbjct: 207 GAFLDLGGVDGLLHIT------DMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGL 260
Query: 258 KQLEEDPLLETLEK 271
KQL EDP + E+
Sbjct: 261 KQLGEDPWGDIAER 274
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + VKV++ + E ++ K + W + R V GR DYGAF+ +
Sbjct: 239 GDEVEVKVLKFDRERARVSLGLKQLGEDPWGDIAERYPVNTQASGRVTNIADYGAFVEIE 298
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
DG+ GLVHVSE+ W + + R + G EV V ++ +D E+ RI+L +KQ + +
Sbjct: 299 --DGV---EGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISLGMKQCQSN 353
Query: 264 PLLE 267
P E
Sbjct: 354 PWQE 357
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P+K + G + V ++ + E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVNPRKFV------AVGQEVEVMILDVDSERRRISLGMKQCQSNPWQ 356
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDIL 233
++ N + G+ D+G FI L P G+ GLVH+S++SWD + +R
Sbjct: 357 EFEKNYNKGERIKGQIKSITDFGIFIGL--PGGI---DGLVHLSDLSWDENNEEAVR-AY 410
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+G EV ++ I+ ++ RI+L IKQL +D
Sbjct: 411 QKGQEVETIILGIEADRERISLGIKQLSQD 440
>gi|443475240|ref|ZP_21065196.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019959|gb|ELS33979.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R Y+ ++E K+ G N GG++V L GF+P +S + ++AK
Sbjct: 107 WQTLRDYQAESKVFETKVIGTNSGGVIVDSVGLRGFIPRSHLSDTS----------DLAK 156
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G I+ V V+ A+E KKLV S + A +++ + G R +GAF+
Sbjct: 157 -LVGKILPVVVLDADETRKKLVLSNRQAAKLAAMNQLAKGQLITGKVTNIRPFGAFVEF- 214
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
++GL+H+ E+S + D + D ++ V+ ID + RI LS K LE
Sbjct: 215 -----AGVSGLLHIKEMSQKPVNDPTHVFQINDIIKAVVVDIDESRDRIALSTKILE 266
>gi|71892158|ref|YP_277890.1| 30S ribosomal protein S1 [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|71796264|gb|AAZ41015.1| 30S ribosomal subunit protein S1 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 564
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 27/224 (12%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ + T++ + D + + +++ W + ++ G I G
Sbjct: 58 GELEISMGDYVDVTLDAVEDGFGETVLSREKAKRYESWVSLEQAHQNMTTVTGIINGKVK 117
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V + FLP + K I + + L G KVI+ + + +V
Sbjct: 118 GGFTVELNGVRAFLPGSLVDV--------KPIRDTSF-LEGQAFEFKVIKLDHKRNNVVV 168
Query: 173 S-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E+D + N+ + + + DYGAFI L DGL H+T +
Sbjct: 169 SRRAVIESENSVERDQLLNQLHEGIEIRGVVKNLTDYGAFIDLGGVDGLLHIT------D 222
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++W ++ DI+N GDE+ VKV++ DRE+ R++L +KQL EDP
Sbjct: 223 MAWKRVKHPSDIVNVGDEIIVKVLRFDRERIRVSLGLKQLGEDP 266
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A + G G++ G + V G + +M ++ P K +
Sbjct: 267 WAAIVQRHKEGSKLIGQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVV---- 322
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ ++E +++ K W K+S N D +GR D+G F
Sbjct: 323 --AVGESVEVMVLDIDKERRRISLGLKQCKINPWQKFSDMYNRGDRVMGRIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L + GLVH+S++SW L ++ + +GDE+ V+++D E+ RI+L IKQ
Sbjct: 381 IGLEGG-----IDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQVDAERERISLGIKQ 435
Query: 260 LEEDPL 265
L EDPL
Sbjct: 436 LTEDPL 441
>gi|407015342|gb|EKE29231.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 412
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSH----SCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166
N G LL+ + F+P Q++P + P+K + + + L G V+VI +++
Sbjct: 122 NKGWLLIDLDGIKWFIPVSQLTPVNYPRVEWANPEKILAHLNR-LVGKPFKVRVINVDQD 180
Query: 167 MKKLVFSEKDAV-------WNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHV 218
KK++FSEK AV K VE + G YG F+ L GLVHV
Sbjct: 181 GKKIIFSEKAAVEEERGAALEKLKIGAQVEWVVSGILTYGLFVTFN------GLEGLVHV 234
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
SE+ W + D GD+++V+VI ID +K I+LS+K+L+ +P +E +K
Sbjct: 235 SEIDWGHVNDPSKFAKVGDKIKVEVIGIDADK--ISLSMKRLKHNPWVELAKK 285
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G E + G GL V F L G + ++ H +P K ++ + +I +
Sbjct: 206 GAQVEWVVSGILTYGLFVTFNGLEGLVHVSEIDWGH-VNDPSK-FAKVGDKIKVEVIGID 263
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF---VGR--DYGAFIHLRFPDGLYHLTG 214
+ + MK+L K W + + + V D+ V R +G F+ L DG ++G
Sbjct: 264 ADKISLSMKRL----KHNPWVELAKKYKVGDVIKAPVMRISKFGIFLSL---DG--GISG 314
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L+H+SE+S ++++++ D + GD V KVI D + RI LS+K EE
Sbjct: 315 LIHLSEISNEIVKNVEDYVKVGDLVEAKVITFDPNEKRIGLSLKTQEE 362
>gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111]
gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493]
gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493]
gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111]
Length = 555
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 85 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 142
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 143 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 195 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 249 DRDKKRVSLGMKQLADDP 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAK 149
K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 269 KIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ---- 323
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFI 201
+G + V V++ +EE +++ K W +++ + ++ G+ D+G FI
Sbjct: 324 --SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 381
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L IKQ
Sbjct: 382 GLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIKQ 435
Query: 260 LEEDPLLETLE 270
LE DP +E +E
Sbjct: 436 LEGDPFMEFVE 446
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 175 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 234 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 288 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 342 ISLGIKQCKRNPWQEFAEK 360
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|421766691|ref|ZP_16203460.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
gi|407624717|gb|EKF51450.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
Length = 407
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
K A A G I EG + G V + G + ++S + K P +
Sbjct: 186 KEAFAQLNEGDIVEGTVSRVTNFGAFVDLGGIDGLVHVSELS-HNRVKRPSDVVK----- 239
Query: 151 LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
G + VK+++ +EE +L S K W + + V G D+GAF+
Sbjct: 240 -PGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L FP + GLVHVS++SW+ +++ +D+L G V VKV+ + E+ RI+LSIK LEE
Sbjct: 299 L-FP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEE 353
Query: 263 DP 264
P
Sbjct: 354 AP 355
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + + GF+P M ++ K+ +K G I K+I+ N + +
Sbjct: 121 GGLSVDYNGVRGFIP-ASMIDTYFVKDTKK--------FVGQEIEAKIIEINASENRFIL 171
Query: 173 SEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + V + +++N DI G ++GAF+ L DGL VHVSE
Sbjct: 172 SRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVTNFGAFVDLGGIDGL------VHVSE 225
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+S + ++ D++ GD+V VK++K+D E R++LS+K + P E +E+ P G
Sbjct: 226 LSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSLSLKATQAGP-WEQVEEKAPVG 280
>gi|304310672|ref|YP_003810270.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
gi|301796405|emb|CBL44613.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
Length = 551
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A W+ A E+ I +G I G GG V ++ FLP + +
Sbjct: 80 SREKAKRAEA-WRRLEAACEASQIVKGIINGKVKGGFTVDVDAVRAFLPGSLVD----IR 134
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L G + KVI+ + + +V S E++A+ + +
Sbjct: 135 PVRDTAH-----LEGKELEFKVIKLDAKRNNVVVSRRAVLEAENSAEREALLSNLQEGME 189
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K
Sbjct: 190 VKGIVKNLTDYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVAVGDEILVKVLKF 243
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DR+++R++L +KQL DP +E ++ P+G
Sbjct: 244 DRDRNRVSLGLKQLGSDPWVE-IKARYPEG 272
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G I V ++ +EE +++ K W
Sbjct: 297 GLVHVSEMDWTNKNIHPSKVVS------IGEEIEVVILDIDEERRRISLGVKQCKPNPWE 350
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++++ N D G+ D+G FI L DG + GLVH+S++SWDL ++
Sbjct: 351 EFATHFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWDLPGEEAVRAYK 405
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE+ ++ +D E+ RI+L +KQL EDP L
Sbjct: 406 KGDEIDTVILSVDPERERISLGVKQLSEDPFTAYL 440
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F L+ + GLVHVSE+ W ++I +++ G+E+ V ++ ID E+ RI
Sbjct: 284 DYGCFAELQ-----EGVEGLVHVSEMDW-TNKNIHPSKVVSIGEEIEVVILDIDEERRRI 337
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 338 SLGVKQCKPNPWEE 351
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA + LR DG+ ++ SE+S D I+D R+ L EGD + ++I +DR+ I LS+
Sbjct: 460 GAVVELR--DGV---EAVLKASEISRDRIEDARNALKEGDVIEARIIAVDRKNRAINLSV 514
Query: 258 K---QLEEDPLLETL---EKVIPQGLEPYLKS 283
K +E ++TL + V P+ + +K+
Sbjct: 515 KAKDAADEKEAMKTLSQDDAVAPRTIGDLIKA 546
>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 401
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR D+G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTDFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 306 -QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154]
gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154]
Length = 555
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 85 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 142
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 143 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 195 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 249 DRDKKRVSLGMKQLADDP 266
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 90 W-KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 267 WAKIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
+G + V V++ +EE +++ K W +++ + ++ G+ D+G
Sbjct: 324 ----SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGM 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L I
Sbjct: 380 FIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGI 433
Query: 258 KQLEEDPLLETLE 270
KQLE DP +E +E
Sbjct: 434 KQLEGDPFMEFVE 446
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 175 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 234 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 288 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 342 ISLGIKQCKRNPWQEFAEK 360
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212]
gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212]
Length = 555
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 85 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 142
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 143 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 195 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 249 DRDKKRVSLGMKQLADDP 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAK 149
K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 269 KIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ---- 323
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFI 201
+G + V V++ +EE +++ K W +++ + ++ G+ D+G FI
Sbjct: 324 --SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 381
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L IKQ
Sbjct: 382 GLEG-----DIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIKQ 435
Query: 260 LEEDPLLETLE 270
LE DP +E +E
Sbjct: 436 LEGDPFMEFVE 446
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 175 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 234 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 288 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 342 ISLGIKQCKRNPWQEFAEK 360
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|52425531|ref|YP_088668.1| 30S ribosomal protein S1 [Mannheimia succiniciproducens MBEL55E]
gi|52307583|gb|AAU38083.1| RpsA protein [Mannheimia succiniciproducens MBEL55E]
Length = 549
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 40/237 (16%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ VN LD D SR A W + +AY+E
Sbjct: 48 IPVEEFQNAQGELEVQVGDVVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEQAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + ++H L G + KVI
Sbjct: 108 VT-GLINGKVKGGFTVELNGVRAFLPGSLVD----TRPVRDTLH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG--------------RDYGAFIHLRFPD 207
+ +++ +V S + + ++ S + E+I DYGAF+ L D
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQ--DREEILANLAEGAEVKGTVKNLTDYGAFVDLGGVD 215
Query: 208 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L +KQL +DP
Sbjct: 216 GLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G GK+ G V V G + +M ++ P K +
Sbjct: 267 WAAIAQNHPVGSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K W +++ N D G+ D+G F
Sbjct: 324 ---LGDTVEVMVLEIDEERRRISLGLKQCKANPWLQFAETHNKGDKVEGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L + GLVH+S++SW++ + +R+ +GDEV V+++D K RI+L IK
Sbjct: 381 IGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVAAVVLQVDSAKERISLGIK 434
Query: 259 QLEEDPL 265
QLEEDP
Sbjct: 435 QLEEDPF 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 23/198 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S D + A G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSQDREEILANLAEGAEVKGTVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ +++ ++ K W + V G+
Sbjct: 234 IVN------VGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAQNHPVGSKLTGKVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLE 270
I+L +KQ + +P L+ E
Sbjct: 342 ISLGLKQCKANPWLQFAE 359
>gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331]
gi|81629367|sp|Q83E09.1|RS1_COXBU RecName: Full=30S ribosomal protein S1
gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331]
Length = 551
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 81 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 139 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 190
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 191 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 244
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 245 DRDKKRVSLGMKQLADDP 262
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAK 149
K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 265 KIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ---- 319
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFI 201
+G + V V++ +EE +++ K W +++ + ++ G+ D+G FI
Sbjct: 320 --SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 377
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L IKQ
Sbjct: 378 GLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIKQ 431
Query: 260 LEEDPLLETLE 270
LE DP +E +E
Sbjct: 432 LEGDPFMEFVE 442
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 229
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 230 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 283
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 284 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 337
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 338 ISLGIKQCKRNPWQEFAEK 356
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>gi|386322231|ref|YP_006018393.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-GD]
gi|442315037|ref|YP_007356340.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-2]
gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD]
gi|441483960|gb|AGC40646.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-2]
Length = 603
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 42 ERICQRNLCPVGKFSTNAAKITPT-----TVNPILDDSSDANNR----QSQSRSSADWKA 92
E I + G S N + P V ++D D + ++R+ W
Sbjct: 80 EAIVDIDFKSEGVISLNEFRYNPNLKVGDEVEVMVDRREDKTGQLQLSHKKARTLKAWDK 139
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
Y ESG + G ++ GG++V F + FLP Q+ +P K +
Sbjct: 140 VNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQIDV-----KPIKDYDQ----YV 190
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED-------------IFVGR---- 195
G + KV++ N E K +V S K + ++ED + G
Sbjct: 191 GKTMEFKVVKINPEFKNVVVSHKALI------EADIEDQKKEIIAQLEKGQVLEGTVKNI 244
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
YG FI L DGL VH++++SW + +IL +G V+V ++ D +K+RI
Sbjct: 245 TSYGVFIDLGGVDGL------VHITDLSWSRVNHPTEILEDGQTVKVVILDFDEDKTRIQ 298
Query: 255 LSIKQLEEDP 264
L +KQLE P
Sbjct: 299 LGMKQLEAHP 308
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + EG ++ G+ + + G + +S S P + + + G
Sbjct: 229 AQLEKGQVLEGTVKNITSYGVFIDLGGVDGLVHITDLSWSR-VNHPTEILED------GQ 281
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+ V ++ +E+ ++ K W + V D G+ DYGAF+ + P
Sbjct: 282 TVKVVILDFDEDKTRIQLGMKQLEAHPWEALDQNLKVGDKVKGKVVVLADYGAFVEVA-P 340
Query: 207 DGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+SW ++ D + GDEV +V+ +D+E+ +I+L +KQL EDP
Sbjct: 341 ----GVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEERKISLGMKQLSEDP 395
>gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii Q321]
gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii Q321]
Length = 551
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 81 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 139 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 190
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 191 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 244
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 245 DRDKKRVSLGMKQLADDP 262
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAK 149
K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 265 KIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ---- 319
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFI 201
+G + V V++ +EE +++ K W +++ + ++ G+ D+G FI
Sbjct: 320 --SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 377
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L IKQ
Sbjct: 378 GLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIKQ 431
Query: 260 LEEDPLLETLE 270
LE DP +E +E
Sbjct: 432 LEGDPFMEFVE 442
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 229
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 230 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 283
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 284 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 337
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 338 ISLGIKQCKRNPWQEFAEK 356
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>gi|160872757|ref|ZP_02062889.1| ribosomal protein S1 [Rickettsiella grylli]
gi|159121556|gb|EDP46894.1| ribosomal protein S1 [Rickettsiella grylli]
Length = 522
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 39/249 (15%)
Query: 49 LCPVGKFSTNAAKI-------TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGF 101
L P+ +F A ++ ++ + D + + +++ + W A + ++
Sbjct: 47 LIPIEQFYNEAGELEVSVGDQVDVSIESLEDGFGETRLSREKAKRAEMWAALQRAHDADT 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
+ GK+ G GG V SL FLP + P SI E G + K
Sbjct: 107 LVTGKVTGKVKGGFTVEIGSLRAFLPGSLVDVRPIRDS-----SIIE------GKDLEFK 155
Query: 160 VIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPD 207
VI+ + + +V S E A + + + + G DYGAFI L D
Sbjct: 156 VIKLDPKRNNIVLSRRAVLESEGQAGREQLLTELEEGQVIKGIVKNLADYGAFIDLGGID 215
Query: 208 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
GL +HV+++SW ++ ++LN GDE+ V V+KI+RE+ R++L +KQL DP E
Sbjct: 216 GL------LHVTDISWKRVKQPSEVLNIGDEIEVVVLKIERERGRVSLGLKQLVGDP-WE 268
Query: 268 TLEKVIPQG 276
L K P G
Sbjct: 269 DLVKRYPVG 277
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +G ++ G + + G L +S K+P + ++ G I
Sbjct: 190 EEGQVIKGIVKNLADYGAFIDLGGIDGLLHVTDISWKR-VKQPSEVLN------IGDEIE 242
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V V++ E ++ K V W R V G+ DYG F+ +
Sbjct: 243 VVVLKIERERGRVSLGLKQLVGDPWEDLVKRYPVGTRLKGKVTNVTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W + I+ G E+ V V+ ID ++ RI+L IKQ + +P
Sbjct: 298 EGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVIVLDIDSDRRRISLGIKQCKSNP 353
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 8/68 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L P ++ GLVH+S+++W+L + +R +GDE+ ++ ID E+ RI
Sbjct: 376 DFGLFIGL--PG---NIDGLVHLSDIAWNLSGEEAVRK-YKKGDELETIILSIDPERERI 429
Query: 254 TLSIKQLE 261
+L IKQL+
Sbjct: 430 SLGIKQLD 437
>gi|332288796|ref|YP_004419648.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
gi|330431692|gb|AEC16751.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
Length = 549
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSA----DWKA-ARAYKESGF 101
P +F +IT V LD D SR A W A +AY++
Sbjct: 48 IPAEEFQNAQGEITVQVGDQVQVALDAVEDGFGETKLSREKAVRHESWIALEKAYEDQET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + + ++H L G + KVI
Sbjct: 108 VV-GLINGKVKGGFTVELNGVRAFLPGSLVD----TRPVRDTLH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E+D + V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQERDQLLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K DR+++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPGEIVNVGDEVTVKVLKFDRDRTRVSLGLKQLGQDP 266
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGIEGLVHVSEMDWTNKNIHPSKVVS------VGDEVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWQQFADTHNKGDKVSGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ + +R+ +GDEV V+++D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNVPGEEAVRN-YKKGDEVEAIVLQVDAAKERISLGIKQLEEDPF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G ++
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPGEIVN------VGDEVT 242
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + + ++ K W + V G+ DYG F+ + L
Sbjct: 243 VKVLKFDRDRTRVSLGLKQLGQDPWAAIAENYPVNSKLTGKVTNLTDYGCFVEI-----L 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I +++ GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 DGIEGLVHVSEMDW-TNKNIHPSKVVSVGDEVEVMVLEIDEERRRISLGLKQCKPNP 353
>gi|451820111|ref|YP_007456312.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786090|gb|AGF57058.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 634
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 20/169 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G+++ F G + + G L Q+S +H K+ ++ K G II VK
Sbjct: 478 GDVVKGEVKRFTNFGAFININGIDGLLHLSQISWNHI-----KNAGDVLK--EGQIIDVK 530
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI ++E KKL S K+ + W+ + E I +G+ D+GAF+ L P
Sbjct: 531 VIDLDKETKKLSLSMKELMPKPWDNAKEKYPEESIVLGKVVRLNDFGAFVELE-PG---- 585
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ GLVH+S++S + I+ ++L G E++ K++ +D E RI+LSIK +
Sbjct: 586 VDGLVHISKISHNRIEHPSEVLKIGQEIKAKILGVDEENKRISLSIKDV 634
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 86 SSADWKAARAYKE------SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
S +++ AYKE G I+E I+ GL+ + + F+P Q+ +
Sbjct: 370 SRLEYEREEAYKELEKLFTEGTIFEVNIKEAREKGLVSDYKGVRIFIPASQID----IRF 425
Query: 140 PQKSIHEIAKGLTGSIIS------VKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFV 193
Q + K L +I VKV+ + + L+ K+A K +N+ D+
Sbjct: 426 IQNKDEFVGKNLEVKLIDFSLGKPVKVVASR---RVLLEEAKNAEEAKALENINIGDVVK 482
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G ++GAFI++ DGL HL S++SW+ I++ D+L EG + VKVI +D+
Sbjct: 483 GEVKRFTNFGAFININGIDGLLHL------SQISWNHIKNAGDVLKEGQIIDVKVIDLDK 536
Query: 249 EKSRITLSIKQLEEDPLLETLEK 271
E +++LS+K+L P EK
Sbjct: 537 ETKKLSLSMKELMPKPWDNAKEK 559
>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
Length = 401
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E+G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EAGTPIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYMGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD + ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID +++RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPF 273
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ ++ DIF G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRNRISLSIKQTEPSPFEQATANLHDGDIFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|398306780|ref|ZP_10510366.1| 30S ribosomal protein S1 [Bacillus vallismortis DV1-F-3]
Length = 382
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWSQIGEKVKSGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEEAP 348
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLVKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ S++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQSNKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K P + EKV
Sbjct: 256 KDTLPGPWSQIGEKV 270
>gi|393776139|ref|ZP_10364436.1| 30S ribosomal protein S1 [Ralstonia sp. PBA]
gi|392717082|gb|EIZ04659.1| 30S ribosomal protein S1 [Ralstonia sp. PBA]
Length = 564
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ ++ + + D + +++ A W ESG I G +
Sbjct: 59 LNDTGELEVQVGDFVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALESGEIITGAVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YENKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ AV N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAVVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLTVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARTQKKGDKLTGAIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
P G+ GLVH+S++SW+ + +R +GDEV V+ ID EK RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWNESGEEAVRK-YKKGDEVEAMVLGIDVEKERISLGIKQLS 442
Query: 262 EDPL 265
DP
Sbjct: 443 GDPF 446
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + G + SE+S D ++D R++L EG+ V V+ +DR+ I LS+
Sbjct: 470 GAVIQL-----ADDVEGYLRASEISSDRVEDARNVLKEGESVTAMVVNVDRKSRSINLSV 524
Query: 258 KQLEEDPLLETLEK 271
K + E ++K
Sbjct: 525 KAKDAGDAQEAMQK 538
>gi|329894499|ref|ZP_08270313.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
gi|328923024|gb|EGG30349.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
Length = 558
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 27/199 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + WK A + +G I G GG V S+ FLP + +
Sbjct: 86 REKAKRAESWKDLEAAHAGDEVVKGIINGKVKGGFTVDINSIRAFLPGSLVD----VRPI 141
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
++++H L G + KVI+ +++ +V S E++A+ + V+
Sbjct: 142 RETLH-----LEGKELDFKVIKLDQKRNNVVVSRRAVMEEANSVEREALLENLQEGMAVK 196
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
+ DYGAF+ L DGL H+T +++W I+ +I+ G E+ V+V+K DR
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQEIDVRVLKFDR 250
Query: 249 EKSRITLSIKQLEEDPLLE 267
+++R++L +KQL EDP +E
Sbjct: 251 DRNRVSLGLKQLGEDPWVE 269
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVQ------LGDQVEVMVLDIDEERRRISLGIKQCQQNPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++++ N D G D+G FI L ++ GLVH+S++SW+ + +R+
Sbjct: 356 AFAAQYNKGDKISGAIKSITDFGIFIGLE-----GNIDGLVHLSDISWNETGEEAVRN-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L IKQLE DP
Sbjct: 410 KKGDEIETVILSIDPERERISLGIKQLENDPF 441
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F L + GLVHVSE+ W +++ I+ GD+V V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDQVEVMVLDIDEERRRI 342
Query: 254 TLSIKQLEEDP 264
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ V+++S + I+D R EGD V K+I +DR+ I LS+K
Sbjct: 473 EVEGVLKVADISRERIEDARSAYKEGDTVEAKIIAVDRKNRTIGLSVK 520
>gi|386814531|ref|ZP_10101749.1| ribosomal protein S1 [Thiothrix nivea DSM 5205]
gi|386419107|gb|EIJ32942.1| ribosomal protein S1 [Thiothrix nivea DSM 5205]
Length = 555
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 45/290 (15%)
Query: 18 SCTHSSLSLSLSLSSLVCVNPLII--ERICQRNLCPVGKFSTNAAKITPTT---VNPILD 72
S T L+ + L N II + + P +F +IT V LD
Sbjct: 14 SYTQMQPGALLNATVLEVRNDFIIVSAGLKSEGVIPAEQFKNERGEITVKVGDLVEVALD 73
Query: 73 DSSDANNRQSQSRSSADWKAARAYK--ESGF----IYEGKIQGFNGGGLLVRFFSLVGFL 126
D SR A + RA++ E F I G I G GG +V + FL
Sbjct: 74 TVEDGFGETRLSREKA--RRLRAWEILEEAFNNEEIITGTITGKVKGGFVVELGDIRAFL 131
Query: 127 P--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS 184
P + P L + K+I+ +++ +V S + V +YS+
Sbjct: 132 PGSLVDVRPVRDTSY-----------LENKELEFKLIKLDQKRNNVVVSRRAVVEEEYSA 180
Query: 185 RVN--VEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
+E++ G+ DYGAF+ L DGL H+T +++W ++ ++
Sbjct: 181 EREALMENLQEGQVVKGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSEV 234
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
+N GDE+ VKV+K DR+K+R++L +KQL EDP + L + P G + K
Sbjct: 235 VNIGDEIDVKVLKFDRDKNRVSLGLKQLGEDP-WQDLVRRYPSGTRIFGK 283
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y I+ GK+ G V V G + +M ++ P K +
Sbjct: 272 RRYPSGTRIF-GKVSNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPAKVV------TL 324
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V ++ + E +++ K W+++++ N D G+ D+G FI L
Sbjct: 325 GDEVEVMILDIDAERRRISLGMKQCQPNPWDEFAANHNKGDRVSGKIKSITDFGIFIGL- 383
Query: 205 FPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW++ + +R +GDEV V+ +D E+ RI+L IKQ+E+
Sbjct: 384 --DG--GIDGLVHLSDISWNMPGEEAVRS-YKKGDEVEAVVLAVDPERERISLGIKQMEQ 438
Query: 263 DPL 265
DP
Sbjct: 439 DPF 441
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G++ SE+S D ++D R +L EGD + K + +DR+ I LSIK
Sbjct: 474 IEGILRASELSRDRVEDARTLLKEGDTIEAKFMGVDRKTRSINLSIK 520
>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
bacterium]
Length = 567
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V V+ NE+ +++ S K W K + I GR D+GAF+HL
Sbjct: 335 GQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLE 394
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DG+ L+H+SE+SWD + D++ EG E+ KVIK D K +I LS+K+L+EDP
Sbjct: 395 --DGV---EALLHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDP 449
Query: 265 LLETLE 270
+ LE
Sbjct: 450 WHKFLE 455
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + + GLVH+SE+SW + R+++ G +V V V+ ++ ++ R++L
Sbjct: 300 DFGAFVRIE-----EDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSL 354
Query: 256 SIKQLEEDPLLETLEKVIPQG 276
S+K+++ DP E +E+ P+G
Sbjct: 355 SMKRVQPDP-WEKIEEKYPEG 374
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 160 VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHV 218
V+ E +K+L +K+ +++K +E D+G F+ + G + GLVH
Sbjct: 178 VVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVDI----GGFE--GLVHR 231
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
SE+SW I + GD+V VKV+ +DR K RI+LSIKQL DP + L++ P G
Sbjct: 232 SEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWI-GLKQRYPAG 288
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G I+ KVI+++ +K+ S K+ W+K+ +V I G +D+GAF ++
Sbjct: 421 GQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAF--MK 478
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
D + GL+HVSE++ + I D+L G V+ ++I I+ EK ++ LS++ L
Sbjct: 479 ITD---DVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNL 531
>gi|348026190|ref|YP_004765995.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
gi|341822244|emb|CCC73168.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
Length = 652
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 27/195 (13%)
Query: 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
DWK R E+ + E + N GL+V SL GF+P Q KS+
Sbjct: 375 DWKEVREAFENDQLVECTGKETNKAGLVVSIKSLRGFIPLSQGDIKFV-----KSLDY-- 427
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGRD------- 196
L G VKVI +E +LV S K + + ++ ++E+ V
Sbjct: 428 --LVGQTFQVKVIDIDEHKNRLVLSRKAVLEAEREAKREEALKHIEEGAVLEGTVVKIMP 485
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
YGAFI L + GL+H+S++SW I + +L+ G++++V V K D+E++RI+LS
Sbjct: 486 YGAFIDLG------GVEGLLHISDISWKRISSVDAVLHTGEKLQVLVQKFDQERNRISLS 539
Query: 257 IKQLEEDPLLETLEK 271
+K L+++P + +EK
Sbjct: 540 LKALQKNPWIAAIEK 554
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL-TGSII 156
E G + EG + G + + G L +S K I + L TG +
Sbjct: 471 EEGAVLEGTVVKIMPYGAFIDLGGVEGLLHISDIS--------WKRISSVDAVLHTGEKL 522
Query: 157 SVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDG 208
V V + ++E ++ S K W + V DI G +GA + + P+
Sbjct: 523 QVLVQKFDQERNRISLSLKALQKNPWIAAIEKFEVGDIVKGEVKKLLPFGAILAID-PE- 580
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
L GL+H+SE++ ++D++N GD + VK+I ID +K +I+LS+ +++D
Sbjct: 581 ---LQGLLHISELTEKRGVAVKDLVNIGDVMNVKIIGIDTDKKKISLSVLAIQKD 632
>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
Length = 415
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 23/148 (15%)
Query: 122 LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNK 181
L GF+PF Q+S + +E L + +K ++ +EE +LV S + A+ +
Sbjct: 211 LRGFVPFSQISAKSTAEE-----------LIDKELPLKFVEVDEEQSRLVLSNRKAMADS 259
Query: 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 236
+++ + + +G + YGAF+ + + GL+HVS++S D + DI +L G
Sbjct: 260 -QAQLGIGSVVLGTVQSLKPYGAFVDIG------GINGLLHVSQISHDRVSDISTVLQPG 312
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDP 264
D ++V ++ DRE+ R++LS K+LE P
Sbjct: 313 DTLKVMILSHDRERGRVSLSTKKLEPTP 340
>gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c]
Length = 557
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY + I +G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRHEAWVELEKAYDDKETI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLANLEEGHE 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
D+EKSR++L +KQ+ DP E E+ P+G
Sbjct: 249 DKEKSRVSLGMKQMGNDPWQEIAER-YPEG 277
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDTVEVMVLEIDEERRRISLGLKQCKPNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ + D G+ D+G FI L DG + GLVH+S++SW+ +D
Sbjct: 356 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE+ V+++D E+ RI+L +KQ+EEDP + L
Sbjct: 411 KGDEISAVVLQVDPERERISLGVKQIEEDPFNQYL 445
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDQLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ ++E ++ K + W + + R G
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKPNPWEE 356
>gi|146306885|ref|YP_001187350.1| 30S ribosomal protein S1 [Pseudomonas mendocina ymp]
gi|330502874|ref|YP_004379743.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
gi|145575086|gb|ABP84618.1| SSU ribosomal protein S1P [Pseudomonas mendocina ymp]
gi|328917160|gb|AEB57991.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
Length = 560
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGF 101
+ P+ +F ++T V+ LD D SR A W A +
Sbjct: 47 VIPLDQFFNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFNAEE 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ +G I G GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------VGDEVEVMVLDIDEERRRISLGIKQCKTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPENTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKTNP 353
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EGDEV K+I +DR+ I+LSIK
Sbjct: 473 EIEATLKASEISRDRVEDARNVLKEGDEVEAKIISVDRKSRVISLSIK 520
>gi|86608329|ref|YP_477091.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 304
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
N GG++V L GF+P +S +E L G ++ I+ N E KL
Sbjct: 130 NKGGVVVDVQGLRGFIPRSHLSQREGLEE-----------LVGQSLTASFIEVNPEANKL 178
Query: 171 VFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL 225
V S++ AV ++Y+S VE G + +G F+ L +TGL+H+ +VS
Sbjct: 179 VLSQRAAVKSENLSRYTSGQVVEGKVSGLKPFGVFVDLE-----EGVTGLLHIKQVSQSF 233
Query: 226 IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP--LLETLEKVIPQGLE 278
+ + D+ G ++ VI +D K R+ LS++ LE+ P +LE L++V+ + E
Sbjct: 234 VASLPDLFKPGQRIKAVVIDVDEAKGRMALSLRVLEKHPGEVLEQLDRVMEEAEE 288
>gi|407792840|ref|ZP_11139876.1| 30S ribosomal protein S1 [Idiomarina xiamenensis 10-D-4]
gi|407217098|gb|EKE86934.1| 30S ribosomal protein S1 [Idiomarina xiamenensis 10-D-4]
Length = 558
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRYEAWLQLEKAYEDDATV-NGSISGKVKGGFTVDLGGVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+ + H L + KVI+ +++ +V S + + + S+ +E++ G+
Sbjct: 141 VRDTAH-----LENKELEFKVIKLDQKRNNVVVSRRAVIEKENSAEREELLENLQEGQEV 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWADIANR-YPEG 277
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
A Y E G +G++ G V V G + +M ++ P K ++
Sbjct: 271 ANRYPE-GTRLQGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVN------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
++ V V++ +EE +++ K W +++ + + G+ D+G FI L
Sbjct: 324 LDDVVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKNHDKAEKVTGKIKSITDFGIFIGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG + GLVH+S++SW+ + +R+ +G+EV V+++D E+ RI+L IKQLE
Sbjct: 384 ---DG--GIDGLVHLSDISWNATGEEAVRE-YKKGEEVTAVVLQVDAERERISLGIKQLE 437
Query: 262 EDPL 265
EDP
Sbjct: 438 EDPF 441
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWADIANRYPEGTRLQGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++N D V V V++ID E+ RI+L +KQ + +P E
Sbjct: 298 EGVEGLVHVSEMDW-TNKNVHPSKVVNLDDVVEVMVLEIDEERRRISLGLKQCKPNPWEE 356
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + V+++S D I+D +LN GD+V + + +DR+ ++LSI+ +E E +++
Sbjct: 474 VEGYIRVADISRDRIEDASTVLNVGDDVEARFMGVDRKNRTLSLSIRAKDEAEEKEAVDQ 533
Query: 272 VIPQ 275
V Q
Sbjct: 534 VNKQ 537
>gi|399520040|ref|ZP_10760826.1| 30S ribosomal protein S1 [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112040|emb|CCH37385.1| 30S ribosomal protein S1 [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 560
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGF 101
+ P+ +F ++T V+ LD D SR A W A +
Sbjct: 47 VIPLDQFFNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFNAEE 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ +G I G GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------VGDEVEVMVLDIDEERRRISLGIKQCKTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R V R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVVARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKTNP 353
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EGDEV K+I +DR+ I+LS+K
Sbjct: 473 EIEATLKASEISRDRVEDARNVLKEGDEVEAKIISVDRKSRVISLSVK 520
>gi|261253452|ref|ZP_05946025.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955955|ref|ZP_12598953.1| 30S ribosomal protein S1 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936843|gb|EEX92832.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342811475|gb|EGU46512.1| 30S ribosomal protein S1 [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 556
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 106/245 (43%), Gaps = 35/245 (14%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIY 103
P +F A ++ + V+ LD D SR A W E
Sbjct: 49 PAEQFKNAAGELEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETV 108
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G I G GG V + FLP + + I + A L + KVI+
Sbjct: 109 VGIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVIKL 159
Query: 164 NEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYH 211
+++ +V S E+D + V+ I DYGAF+ L DGL H
Sbjct: 160 DQKRNNVVVSRRAVIESENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGLLH 219
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+T +++W ++ +I+N GDE++VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 220 IT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AIAK 272
Query: 272 VIPQG 276
P+G
Sbjct: 273 RYPEG 277
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +
Sbjct: 474 VEGYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 533
Query: 269 LEK 271
L K
Sbjct: 534 LNK 536
>gi|32491233|ref|NP_871487.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
gi|25166440|dbj|BAC24630.1| rpsA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 554
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 36/238 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSADWKAA-----RAYKESGF 101
P+ +F N + ++ LD D SR A K A +A+ +S
Sbjct: 48 VPIEQFLNNKGHLEVKVGDVIDVTLDAIEDGFGETILSREKAKRKEAWLNLEKAHLDS-I 106
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G I G GG V + FLP + + + +IH L G + KVI
Sbjct: 107 TVNGIINGKVKGGFTVELNGIRAFLPGSLVD----IRPIRDTIH-----LEGKDLEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVEDIF------VG-----RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S+ R ++ I VG DYGAFI L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSAERDHILKILQEGSKAVGVVKNLTDYGAFIDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
H+T +++W ++ +I++ GDE+ VK++K D+EK+R++L +KQL +DP +E
Sbjct: 218 LHIT------DMAWKRVKHPNEIVSIGDEITVKILKFDKEKTRVSLGLKQLGQDPWIE 269
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K ++ G ++V V+
Sbjct: 282 GKVTNLTDYGCFVEIEEGVEGLVHISEMDWTNKNIHPSKVVN------VGDTVNVLVLDI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +S D GR D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWKNFSKLNKKGDKVQGRIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S+VSW++ ++ +GD + V+++D ++ RI+L IKQL EDP
Sbjct: 391 VHLSDVSWNIQGEEAVKEYKKGDIISAMVLQVDSDRERISLGIKQLSEDPF 441
>gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
Length = 403
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + + +G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 208 WEKVKQLEAAGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQNGEN--------HEQ-- 257
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G+ +V ++ N + +KLV SEK A + + V + G + YG F+ L
Sbjct: 258 -LVGTSFAVAFLEVNADTRKLVLSEKRAASASLLAELEVGQLVDGQVVSVKPYGFFVDL- 315
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++DIR+ ++G+ ++ V +ID + RI L+ LE P
Sbjct: 316 -----GGVSGLLHQSSITGVHLRDIREAFSQGERLKALVTQIDPSRGRIALNTALLETQP 370
>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
Length = 401
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR +GAF+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID +++RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPF 272
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTQFGAFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N DI G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRNRISLSIKQTEPSPFEQATANLNEGDIIEGEVKSLTNFGAFVEV--ADGIQ- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+S + D+L G +V+VKV+ +D + RI+LSIKQ +
Sbjct: 307 --GLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354
>gi|394989057|ref|ZP_10381891.1| 30S ribosomal protein S1 [Sulfuricella denitrificans skB26]
gi|393791476|dbj|GAB71530.1| 30S ribosomal protein S1 [Sulfuricella denitrificans skB26]
Length = 572
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 22/211 (10%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W A E G + G + G GGL V R F SLV P +
Sbjct: 96 REKAKRVAAWLDLEAAMEEGTLVSGMVNGKVKGGLTVMVNGIRAFLPGSLVDIRPVKDTT 155
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
P + KE + + ++ + ++S K + +++ + +E+ A+ + V+ I
Sbjct: 156 P-YENKEMEFKVIKLDRKRNNVVVSRKAV-----LEQSLGAERQALLGNLKEGMVVKGIV 209
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T L +W ++ ++L GDEV V+K D+EK+
Sbjct: 210 KNITDYGAFVDLGGVDGLLHITDL------AWRRVKHPSEVLAVGDEVEAVVLKFDQEKN 263
Query: 252 RITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
R++L +KQL +DP + L + PQ + K
Sbjct: 264 RVSLGVKQLGDDPWV-NLSRRYPQSTRMFGK 293
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y +S ++ GK+ G V + G + +M ++ P K +
Sbjct: 281 SRRYPQSTRMF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPGKVVQ------ 333
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V +++ +EE +++ K W+ ++ + G+ D+G FI L
Sbjct: 334 LGDEVEVMILEIDEERRRISLGMKQCKSNPWDDFAVTHQKGNKVSGQIKSITDFGVFIGL 393
Query: 204 RFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
P G+ GLVH+S++SW++ + +R+ +GDEV V+ ID E+ RI+L IKQ+E
Sbjct: 394 --PGGI---DGLVHLSDLSWNMPGEEAVRN-YKKGDEVEAMVLAIDAERERISLGIKQME 447
Query: 262 EDPL 265
DP
Sbjct: 448 GDPF 451
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G ++ G V + G L ++ K P + + G +
Sbjct: 202 GMVVKGIVKNITDYGAFVDLGGVDGLLHITDLA-WRRVKHPSEVLA------VGDEVEAV 254
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 255 VLKFDQEKNRVSLGVKQLGDDPWVNLSRRYPQSTRMFGKVTNLTDYGAFVEIE-----QG 309
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDEV V +++ID E+ RI+L +KQ + +P
Sbjct: 310 IEGLVHVSEMDW-TNKNVHPGKVVQLGDEVEVMILEIDEERRRISLGMKQCKSNP 363
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG + G + SEVS D ++DIR L EGDEV K+I IDR+ I LSI
Sbjct: 475 GAVITL---DG--EVEGYLRASEVSRDRVEDIRTHLKEGDEVEAKIINIDRKNRNINLSI 529
Query: 258 K 258
K
Sbjct: 530 K 530
>gi|399911179|ref|ZP_10779493.1| 30S ribosomal protein S1 [Halomonas sp. KM-1]
Length = 558
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R+ A WK A E I +G I G GG V S+ FLP P
Sbjct: 85 SREKAKRAEA-WKILEAAFEKEEIVKGVINGKVKGGFTVDIDSIRAFLPGSLVDVRPVRD 143
Query: 133 PSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+H KE + ++ ++S + + E +E++A+ + I
Sbjct: 144 TTHLEHKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQIVGI 198
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE+
Sbjct: 199 VKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRER 252
Query: 251 SRITLSIKQLEEDPLLETLEKVIPQG 276
+R++L +KQL EDP + E+ P+G
Sbjct: 253 NRVSLGLKQLGEDPWVSITER-YPEG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V ++ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------IGDEVDVMILDIDEERRRISLGIKQCTANPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G FI L + GLVH+S++SW + ++
Sbjct: 356 TFNAQYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDLSWSETGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQL+ DP+ E L
Sbjct: 411 KGDEAEAVILSIDPERERISLGIKQLDSDPVAEYL 445
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A A + G G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLATLQEGQQIVGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I+VKV++ + E ++ K + W + R + R
Sbjct: 234 IV------AVGDEINVKVLKFDRERNRVSLGLKQLGEDPWVSITERYPEGTVVQARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++N GDEV V ++ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNIGDEVDVMILDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCTANP 353
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++L+EGD V +++ +DR+ I LSIK ++D + L+K
Sbjct: 474 VVAVLKASEISADRVEDARNVLSEGDTVEARIVNVDRKNRAINLSIKAKDQDDTRQNLKK 533
Query: 272 VIPQGLE 278
+ Q +E
Sbjct: 534 LREQEVE 540
>gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|384175896|ref|YP_005557281.1| hypothetical protein I33_2350 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386758871|ref|YP_006232087.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|428279757|ref|YP_005561492.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|430758469|ref|YP_007209177.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|349595120|gb|AEP91307.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|384932153|gb|AFI28831.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|430022989|gb|AGA23595.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 382
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K P + EKV P
Sbjct: 256 KDTLPGPWSQIGEKVKP 272
>gi|282889765|ref|ZP_06298304.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
coccus]
gi|281500339|gb|EFB42619.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
coccus]
Length = 572
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 33/246 (13%)
Query: 47 RNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFI 102
L P+ +FS + + V +LD + D N + SR A+ W+ + E G I
Sbjct: 56 EGLVPMEEFSDPSQIVLDGEVEVLLDQAEDDNGQIVLSREKAERLRQWEYILQHCEEGSI 115
Query: 103 YEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+G++ GGL+V + FLP Q+ K I + + + K+++
Sbjct: 116 VKGRVLRKVKGGLMVDI-GMEAFLPGSQID--------NKRIKNLDDYIDKTY-EFKILK 165
Query: 163 ANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
N E K +V S ++ + + S R+ DI G D+G F+ L DG+
Sbjct: 166 INIERKNVVVSRRELLEAERVSKKAEVLERIQEGDIREGTVKNITDFGVFLDL---DGI- 221
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
GL+H+++++W I+ +++ GD+++VK++ ID+EK R+ L +KQ E +P + +E
Sbjct: 222 --DGLLHITDMTWKRIKHPSEMVQLGDKLKVKILSIDKEKGRVALGLKQKEPNP-WDQIE 278
Query: 271 KVIPQG 276
+ P G
Sbjct: 279 QKYPPG 284
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I EG ++ G+ + + G L M+ K P + + G +
Sbjct: 197 QEGDIREGTVKNITDFGVFLDLDGIDGLLHITDMTWKR-IKHPSEMVQ------LGDKLK 249
Query: 158 VKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-DYGAFIHLRFPDGL 209
VK++ ++E ++ K D + KY V+ V YGAFI +
Sbjct: 250 VKILSIDKEKGRVALGLKQKEPNPWDQIEQKYPPGTRVKGKIVNLLPYGAFIEIE----- 304
Query: 210 YHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+SW + D D++ +GDEV V+ + +++ +I+L IKQ E +P
Sbjct: 305 PGIEGLIHVSEMSWVKNVTDPSDVVKKGDEVEAIVLSVQKDEGKISLGIKQTEHNP 360
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 176 DAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDIL 233
D V NKY NV+ +I +YGAF+ L + GL+H+S++SW + ++L
Sbjct: 362 DDVQNKYQVGTNVKAEIKSLTNYGAFVELE-----PGVEGLIHISDLSWIKKVSHPSEVL 416
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+GD V ++ +D++ +ITL +KQL ++P E++EK +P G
Sbjct: 417 RKGDVVDAVILSVDKDSKKITLGVKQLSDNP-WESIEKTMPVG 458
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G ++ ++ +++ KK+ K D W + V + G +GAF+ L
Sbjct: 419 GDVVDAVILSVDKDSKKITLGVKQLSDNPWESIEKTMPVGTLVKGVVSKITAFGAFVELE 478
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GL+HV+E+S + D++ +GDEV KVIK+D E +I LSIK+
Sbjct: 479 -----SGIEGLIHVTELSDKAFGKVEDVVAKGDEVIAKVIKLDPEYKKIALSIKE 528
>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 401
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR D+G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTDFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 306 -QGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRISLSIKQVD 354
>gi|90406780|ref|ZP_01214972.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
gi|90312017|gb|EAS40110.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
Length = 555
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY++ + G I G GG V + FLP + +
Sbjct: 84 SREKAKRHEAWIQLEKAYEDQETVI-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGRD 196
+ + H L I KVI+ +++ +V S + + + S+ +E++ G+D
Sbjct: 139 PVRDTAH-----LENKDIEFKVIKLDQKRNNVVVSRRAVIETENSAEREELLENLQEGQD 193
Query: 197 ----------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
YGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 194 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKY 247
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 248 DRERTRVSLGLKQLGEDP 265
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 189 QEGQDVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 241
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R G+ DYG F+ +
Sbjct: 242 VKVLKYDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGKVTNLTDYGCFVEIE----- 296
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W ++I +++ GD V V+ ID E+ RI+L +KQ + +P E
Sbjct: 297 EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDMAEVMVLDIDEERRRISLGLKQCKANPWEE 355
>gi|313205786|ref|YP_004044963.1| 30S ribosomal protein s1p [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|383485103|ref|YP_005394015.1| 30S ribosomal protein s1 [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|416111215|ref|ZP_11592472.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
gi|380459788|gb|AFD55472.1| SSU ribosomal protein s1p [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
Length = 593
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 42 ERICQRNLCPVGKFSTNAAKITPT-----TVNPILDDSSDANNR----QSQSRSSADWKA 92
E I + G S N + P V ++D D + ++R+ W
Sbjct: 70 EAIVDIDFKSEGVISLNEFRYNPNLKVGDEVEVMVDRREDKTGQLQLSHKKARTLKAWDK 129
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
Y ESG + G ++ GG++V F + FLP Q+ +P K +
Sbjct: 130 VNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQIDV-----KPIKDYDQ----YV 180
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED-------------IFVGR---- 195
G + KV++ N E K +V S K + ++ED + G
Sbjct: 181 GKTMEFKVVKINPEFKNVVVSHKALI------EADIEDQKKEIIAQLEKGQVLEGTVKNI 234
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
YG FI L DGL VH++++SW + +IL +G V+V ++ D +K+RI
Sbjct: 235 TSYGVFIDLGGVDGL------VHITDLSWSRVNHPTEILEDGQTVKVVILDFDEDKTRIQ 288
Query: 255 LSIKQLEEDP 264
L +KQLE P
Sbjct: 289 LGMKQLEAHP 298
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + EG ++ G+ + + G + +S S P + + + G
Sbjct: 219 AQLEKGQVLEGTVKNITSYGVFIDLGGVDGLVHITDLSWSR-VNHPTEILED------GQ 271
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+ V ++ +E+ ++ K W + V D G+ DYGAF+ + P
Sbjct: 272 TVKVVILDFDEDKTRIQLGMKQLEAHPWEALDQNLKVGDKVKGKVVVLADYGAFVEVA-P 330
Query: 207 DGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+SW ++ D + GDEV +V+ +D+E+ +I+L +KQL EDP
Sbjct: 331 ----GVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEERKISLGMKQLSEDP 385
>gi|92114285|ref|YP_574213.1| 30S ribosomal protein S1 [Chromohalobacter salexigens DSM 3043]
gi|91797375|gb|ABE59514.1| SSU ribosomal protein S1P [Chromohalobacter salexigens DSM 3043]
Length = 559
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R+ A WK A E I +G I G GG V S+ FLP P
Sbjct: 85 SREKAKRAEA-WKELEAAFEKDEIVKGVINGKVKGGFTVDVSSIRAFLPGSLVDVRPVRD 143
Query: 133 PSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+H KE + ++ ++S + + E +E++A+ + I
Sbjct: 144 TAHLEHKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQINGI 198
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T +++W I+ +I+ GDEV VKV+K DRE+
Sbjct: 199 VKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEVNVKVLKFDRER 252
Query: 251 SRITLSIKQLEEDP 264
+R++L +KQL EDP
Sbjct: 253 NRVSLGLKQLGEDP 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDDVEVMVLDIDEERRRISLGIKQCTTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+S+R N D G D+G FI L + GLVH+S++SW + ++
Sbjct: 356 DFSARYNKGDRVAGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWSEPGEEAVRKFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQLE DP+ E L
Sbjct: 411 KGDEAEAVILSIDPERERISLGIKQLETDPVSEYL 445
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A A + G G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLATLQEGQQINGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVW----NKY--SSRVNVEDIFV 193
+ G ++VKV++ + E ++ K + W ++Y ++RVN +
Sbjct: 234 IV------AVGDEVNVKVLKFDRERNRVSLGLKQLGEDPWVNIKDRYPENTRVNAR-VTN 286
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GD+V V V+ ID E+
Sbjct: 287 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDDVEVMVLDIDEERR 340
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ +P
Sbjct: 341 RISLGIKQCTTNP 353
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++L+EGD V K++ +DR+ I LS+K ++ + K
Sbjct: 474 VVAVLKASEISADRVEDARNVLSEGDSVEAKIVGVDRKNRAINLSVKAKDQTDTRRAMGK 533
Query: 272 VIPQGLEP 279
+ Q EP
Sbjct: 534 LRDQEAEP 541
>gi|296113088|ref|YP_003627026.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
gi|416158124|ref|ZP_11605563.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
gi|416225062|ref|ZP_11626802.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
gi|416230929|ref|ZP_11628587.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
gi|416242556|ref|ZP_11633592.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
gi|416249498|ref|ZP_11636595.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
gi|421779914|ref|ZP_16216404.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
gi|295920782|gb|ADG61133.1| 30S ribosomal protein S1 [Moraxella catarrhalis BBH18]
gi|326560081|gb|EGE10471.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
gi|326561667|gb|EGE12004.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
gi|326571140|gb|EGE21164.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
gi|326573434|gb|EGE23402.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
gi|326575670|gb|EGE25593.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
gi|407812708|gb|EKF83492.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
Length = 557
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 28/208 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ W+A E+ I +G I GG V S+ FLP + +
Sbjct: 87 REKAKREESWRALEQLHENDEIVKGVISSKVKGGFTVEIGSVRAFLPGSLVD----VRPV 142
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
+++ H L G + KVI+ +++ +V S E+D + K + VE
Sbjct: 143 RETTH-----LEGKELEFKVIKIDKQRNNIVVSRRAVMEAENSAERDELLAKLEEGMEVE 197
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
I +YGAF+ L DGL H+T +++W I+ + + G +++VKV+K DR
Sbjct: 198 GIVKNLTEYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEAVEVGQDLKVKVLKFDR 251
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQG 276
E++R++L +KQL DP E +E+ P G
Sbjct: 252 ERNRVSLGLKQLGADPWTE-VEQTYPVG 278
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 253
D+G FI L + GLVH+S++SW + IR+ ++GD V V+ +D E +RI
Sbjct: 377 DFGLFIGLEGG-----IDGLVHLSDISWTESGEEAIRN-YSKGDTVEAVVLSVDAEANRI 430
Query: 254 TLSIKQLEEDPLLETL 269
+L IKQL DP E L
Sbjct: 431 SLGIKQLNSDPFNEYL 446
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ G + V++++ + +D +L+ GDEV K++ +DR+ I+LSIK +E
Sbjct: 474 EVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIKAKDE 525
>gi|414074052|ref|YP_006999269.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973972|gb|AFW91436.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 408
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
K A A + G I EG + G V + G + ++S S K P ++
Sbjct: 186 KEAFAQLQEGDIVEGTVSRVTNFGAFVDLGGIDGLVHVSELSHSR-IKRPSDAVK----- 239
Query: 151 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
G +++VK+++ + E +L S K W + + V G D+GAF+
Sbjct: 240 -PGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L +P + GLVHVS++SW+ +++ +D+L G V VKV+ + + RI+LSIK LEE
Sbjct: 299 L-YP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERISLSIKALEE 353
Query: 263 DP 264
P
Sbjct: 354 AP 355
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + + GF+P M ++ K+ +K G I K+I+ N + +
Sbjct: 121 GGLSVDYNGVRGFIP-ASMIDTYFVKDTKK--------FVGEEIEAKIIEVNASENRFIL 171
Query: 173 S-----EKDAVWNKYSSRVNVE--DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S E +A+ + + ++ DI G ++GAF+ L DGL VHVSE
Sbjct: 172 SRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDLGGIDGL------VHVSE 225
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+S I+ D + GD V VK++K+D E R++LS+K + P E +E+ P G
Sbjct: 226 LSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGP-WEQVEEKAPVG 280
>gi|333900214|ref|YP_004474087.1| 30S ribosomal protein S1 [Pseudomonas fulva 12-X]
gi|333115479|gb|AEF21993.1| ribosomal protein S1 [Pseudomonas fulva 12-X]
Length = 559
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105
+ P+ +F ++T V+ LD D SR A E+ F E
Sbjct: 47 VIPLEQFFNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEE 106
Query: 106 KIQG-FNG---GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
++G NG GG V + FLP + + + + H L G + KVI
Sbjct: 107 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLEEDP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEEDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKTNP 353
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG+ + SE+S D ++D R++L EG+EV K+I +DR+ I+LS+
Sbjct: 465 GAIITL--ADGI---EATLKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVISLSV 519
Query: 258 KQLEEDPLLETLEKVIPQGLE 278
K + + E ++++ Q +E
Sbjct: 520 KSKDVEDEKEAIKEMRKQEVE 540
>gi|350266463|ref|YP_004877770.1| hypothetical protein GYO_2519 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599350|gb|AEP87138.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 382
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWSQIGEKVKSGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEEAP 348
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K P + EKV
Sbjct: 256 KDTLPGPWSQIGEKV 270
>gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|414596444|ref|ZP_11446019.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
gi|421876351|ref|ZP_16307909.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|421878101|ref|ZP_16309584.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|372557872|emb|CCF24029.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|390447976|emb|CCF25704.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|390482906|emb|CCF28080.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
Length = 396
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 113 GGLLVRFFSLVGFLPFPQMSP-------SHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL+V + GF+P ++ K+ + + EI I+S K + A E
Sbjct: 124 GGLIVMVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDAANARLILSRKAVAAQE 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+L V++K S VE V R D+GAF+ L DGL VHVSE+S
Sbjct: 184 RAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL------VHVSEISH 231
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV----IPQGLEP 279
D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +K+ + +G
Sbjct: 232 DRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDEAADKIAAGSVLEGTVK 291
Query: 280 YLKSF 284
+K F
Sbjct: 292 RVKDF 296
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G V + G + ++S K P + + G ++VK
Sbjct: 198 GEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDR-VKNPADVLTK------GDKVNVK 250
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
++ + E ++ S K W++ + ++ + G +D+GAF+ + L
Sbjct: 251 ILALDTEKGRISLSIKATQRGPWDEAADKIAAGSVLEGTVKRVKDFGAFVEI-----LPG 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P E
Sbjct: 306 IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPQRE 361
>gi|407014750|gb|EKE28733.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 410
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSH----SCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166
N G LL+ + F+P Q++P + P+K + + + L G V+VI +++
Sbjct: 122 NKGWLLIDLDGIKWFIPVSQLTPVNYPRVEWANPEKILAHLNR-LVGKPFKVRVINVDQD 180
Query: 167 MKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLY----HLTGLVHVSEVS 222
KK++FSEK AV + +E + +G + GL+ L GLVHVSE+
Sbjct: 181 GKKIIFSEKAAV--EEERWAALEKLKIGDQVEWVVSGILTYGLFVTFAGLEGLVHVSEID 238
Query: 223 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
W + D GD ++V+VI ID +K I+LS+K+L+ +P +E +K
Sbjct: 239 WGHVNDPSKFAKVGDRIKVEVIGIDADK--ISLSMKRLKHNPWVELAKK 285
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W A K G E + G GL V F L G + ++ H +P K ++
Sbjct: 197 WAALEKLK-IGDQVEWVVSGILTYGLFVTFAGLEGLVHVSEIDWGH-VNDPSK-FAKVGD 253
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ +I + + + MK+L K W + + + V D+ +G F+ L
Sbjct: 254 RIKVEVIGIDADKISLSMKRL----KHNPWVELAKKYKVGDVIKAPVMRISKFGIFLSL- 308
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG ++GL+H+SE+S ++++++ D + GD V KVI D + RI LS+K EE
Sbjct: 309 --DG--GISGLIHLSEISNEIVKNVEDYVKVGDLVEAKVITFDPNEKRIGLSLKTTEE 362
>gi|381394198|ref|ZP_09919916.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330470|dbj|GAB55049.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 557
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY E I +G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRHEAWVELEKAYDEKATI-KGVINGKVKGGFTVEVNTVRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+++ H L G + KVI+ + + +V S E+D + +
Sbjct: 140 PVRETTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDQLLSNLEEGDE 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
D++KSR++L +KQ+ DP E + P+G
Sbjct: 249 DKDKSRVSLGMKQMGSDPWQEIAHR-YPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWN 180
G + +M ++ P K ++ G +++V V++ +EE +++ K D W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVVNVMVLEIDEERRRISLGLKQCIDNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++ D G+ D+G FI L DG + GLVH+S++SW + +R+
Sbjct: 356 TFAKSHEKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWQKQGEEAVRE-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ++EDP
Sbjct: 410 KKGDEISAVVLQVDPERERISLGVKQIDEDPF 441
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDQLLSNLEEGDEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG----- 194
++ G I+VKV++ +++ ++ K W + + R G
Sbjct: 234 IVN------VGDEINVKVLKFDKDKSRVSLGMKQMGSDPWQEIAHRYPEGAKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVNVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLETLEKVIPQG 276
I+L +KQ ++P ET K +G
Sbjct: 342 ISLGLKQCIDNP-WETFAKSHEKG 364
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E G GKI+ G+ + G +S K+ ++++ E K
Sbjct: 354 WETFAKSHEKGDKVSGKIKSITDFGIFIGLDG--GIDGLVHLSDISWQKQGEEAVREYKK 411
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVN----VEDIFVGRDY-GAFI 201
G IS V+Q + E +++ K + +NKY + + V I + D G +
Sbjct: 412 G---DEISAVVLQVDPERERISLGVKQIDEDPFNKYLTDIKKGAIVNGIVIEADAKGVTV 468
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+L + G + + +++ + ++D +I+ GD + K +DR+ ITLS+K +
Sbjct: 469 NL-----AEEVDGFIRIGDLARERVEDASEIVKVGDTIEAKYTGVDRKNRVITLSVKAKD 523
Query: 262 EDPLLETLEKVIPQ 275
+ + L+KV Q
Sbjct: 524 QADEKDALDKVNNQ 537
>gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A
Synechococcus 5B2]
Length = 411
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + + GFN GG+ L GF+P Q+ + +E
Sbjct: 216 WDKVKELEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENHQE---------- 265
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V I+ N E +KLV SEK A + + + G + YG FI L
Sbjct: 266 -LVGKTLGVAFIEVNSETRKLVLSEKRAAIAARFQELEIGQLVEGLVAAVKPYGLFIDL- 323
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ IR++ ++GD V + ++D + RI L+ LE P
Sbjct: 324 -----GGISGLLHQSAITNGSLRSIREVFDQGDRVHALITELDPARGRIGLNTALLEGPP 378
Query: 265 --LLETLEKVI 273
LL +KV+
Sbjct: 379 GELLVEKDKVM 389
>gi|269102376|ref|ZP_06155073.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162274|gb|EEZ40770.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 556
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWIQLEKAYEDAETVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTAH-----LENKELEFKVIKLDQKRNNVVVSRRAVIESENSVERDELLASLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DR+++R++L +KQL EDP + + K P+G
Sbjct: 249 DRDRTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L I
Sbjct: 380 FIGLE-----GGIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLAVDAERERISLGI 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQIEEDPF 441
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + + ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
Length = 403
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD + ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPF 273
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI +++ ++ S K + + + ++ +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIK 352
>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281491326|ref|YP_003353306.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis KF147]
gi|385830375|ref|YP_005868188.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|385838684|ref|YP_005876314.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris A76]
gi|389854887|ref|YP_006357131.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|418039269|ref|ZP_12677575.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|354692385|gb|EHE92215.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|358749912|gb|AEU40891.1| SSU ribosomal protein S1p [Lactococcus lactis subsp. cremoris A76]
gi|374672879|dbj|BAL50770.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis IO-1]
Length = 408
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
K A A + G I EG + G V + G + ++S S K P ++
Sbjct: 186 KEAFAQLQEGDIVEGTVSRVTNFGAFVDLGGIDGLVHVSELSHSR-IKRPSDAVK----- 239
Query: 151 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 202
G +++VK+++ + E +L S K W + + V G D+GAF+
Sbjct: 240 -PGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L +P + GLVHVS++SW+ +++ +D+L G V VKV+ + + RI+LSIK LEE
Sbjct: 299 L-YP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPAEERISLSIKALEE 353
Query: 263 DP 264
P
Sbjct: 354 AP 355
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + + GF+P M ++ K+ +K G I K+I+ N + +
Sbjct: 121 GGLSVDYNGVRGFIP-ASMIDTYFVKDTKK--------FVGEEIEAKIIEVNASENRFIL 171
Query: 173 S-----EKDAVWNKYSSRVNVE--DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S E +A+ + + ++ DI G ++GAF+ L DGL VHVSE
Sbjct: 172 SRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTNFGAFVDLGGIDGL------VHVSE 225
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+S I+ D + GD V VK++K+D E R++LS+K + P E +E+ P G
Sbjct: 226 LSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLSLKATQPGP-WEQVEEKAPVG 280
>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
Length = 420
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 86 SSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIH 145
S W +A ES E K+ GGL++ L GF+P M H
Sbjct: 117 SEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV-GLRGFVP-ASMVERHFV-------- 166
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGRDYGAFIHL 203
E G + +KV + + E K++ S+KD + +Y+++ + I +G++ +
Sbjct: 167 EDFSDYKGRTLRMKVKELDREKNKVILSQKDVLDEEYNAKKQEILNSIEIGQEIEGTVQR 226
Query: 204 RFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
P G++ + GLVH+SE++W +++ +++ EGD+V+V+V+K+D E RI+LS+K
Sbjct: 227 LTPFGVFVDIGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKA 286
Query: 260 LEEDP 264
+ P
Sbjct: 287 AQPGP 291
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG +Q G+ V + G + +M+ H +E + + E G +
Sbjct: 215 EIGQEIEGTVQRLTPFGVFVDIGGIDGLVHISEMA-WHHVEEASELVKE------GDKVK 267
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V++ + E +++ S K A W + + V + G ++GAF+ +
Sbjct: 268 VQVLKVDPENERISLSMKAAQPGPWEQLGDHIQVGAVVSGTVKRLVNFGAFVEI-----A 322
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG EV+VK++ ++ ++ R++LSIK+ EE P
Sbjct: 323 PGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKETEEAP 377
>gi|449094784|ref|YP_007427275.1| 30S ribosomal protein [Bacillus subtilis XF-1]
gi|449028699|gb|AGE63938.1| 30S ribosomal protein [Bacillus subtilis XF-1]
Length = 382
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQEFLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K P + EKV P
Sbjct: 256 KDTLPGPWSQIGEKVKP 272
>gi|389573087|ref|ZP_10163163.1| putative 30S ribosomal protein S1 like protein [Bacillus sp. M 2-6]
gi|388427244|gb|EIL85053.1| putative 30S ribosomal protein S1 like protein [Bacillus sp. M 2-6]
Length = 383
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 92/173 (53%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +GK+Q G V + G + Q+S +H ++P + E G + VK
Sbjct: 188 GSVIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAH-VEKPSDVVEE------GQEVKVK 240
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ + + +++ S K+ + W++ +V D+ G +GAF+ + L
Sbjct: 241 VLAVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGTVQRLVSFGAFVEI-----LPG 295
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I +++L EG V+VKV+ ++ ++ RI+LSI++LEE+P
Sbjct: 296 VEGLVHISQISHKHIGTPQEVLEEGQTVKVKVLDVNEDEERISLSIRELEENP 348
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHYVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNK-------YSSRVNVEDIFVGR-----DY 197
G +S+ V++ + E +++ S + V + + ++ V + G+ D+
Sbjct: 142 DYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLAVGSVIDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL H++ L H ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGLVHISQLSHAH------VEKPSDVVEEGQEVKVKVLAVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|323143254|ref|ZP_08077948.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
gi|322417016|gb|EFY07656.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
Length = 557
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMS 132
+R+ R+ A K A+K + + G I G GG V+ + FLP P
Sbjct: 84 SREKAKRNEAWAKLEEAFKNNEAVV-GVIDGKVKGGFTVQLGGIRAFLPGSLVDVRPVRE 142
Query: 133 PSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+H KE Q + ++ + ++S + I +E +E+++V V+ I
Sbjct: 143 TTHLEGKELQFKVIKLDQKRNNVVVSRRAIIESENS-----TERESVLANLQEGQEVKGI 197
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE+
Sbjct: 198 VKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRER 251
Query: 251 SRITLSIKQLEEDP 264
R++L +KQL DP
Sbjct: 252 QRVSLGLKQLGADP 265
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 23/177 (12%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
EGK+ G V V G + +M ++ K+IH G +++VKV++
Sbjct: 280 EGKVTNLTDYGCFVEIQEGVEGLVHVSEMDWTN------KNIHPSKVVSVGDVVTVKVLE 333
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+EE +++ K W +++ + D G+ D+G FI L + G
Sbjct: 334 IDEERRRISLGLKQCKPNPWLQFAESHSKGDRVTGKIKSITDFGIFIGLEGG-----IDG 388
Query: 215 LVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
LVH+S++SW + +R+ +GDE+ V+++D E+ RI+L +KQ+EEDP + L
Sbjct: 389 LVHLSDISWQQSGEEAVRE-FKKGDEITAVVLQVDPERERISLGLKQIEEDPFADYL 444
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + ++ A + G +G ++ G V + G L M+ K P +
Sbjct: 174 ESENSTERESVLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 232
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E +++ K W ++R + G+
Sbjct: 233 IVN------VGDEITVKVLKFDRERQRVSLGLKQLGADPWADIAARFPIGSNIEGKVTNL 286
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ ++ + GLVHVSE+ W ++I +++ GD V VKV++ID E+ R
Sbjct: 287 TDYGCFVEIQ-----EGVEGLVHVSEMDW-TNKNIHPSKVVSVGDVVTVKVLEIDEERRR 340
Query: 253 ITLSIKQLEEDPLLETLE 270
I+L +KQ + +P L+ E
Sbjct: 341 ISLGLKQCKPNPWLQFAE 358
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + S+ S D ++D +L EGD V K++ +DR+ ++TLSI+ + EE LE
Sbjct: 473 VVGYIRASDCSRDRVEDATTVLKEGDSVEAKLVNVDRKTRQLTLSIRAKDEAEEKEALEN 532
Query: 269 LEK 271
L K
Sbjct: 533 LNK 535
>gi|392411885|ref|YP_006448492.1| ribosomal protein S1 [Desulfomonile tiedjei DSM 6799]
gi|390625021|gb|AFM26228.1| ribosomal protein S1 [Desulfomonile tiedjei DSM 6799]
Length = 578
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 36/245 (14%)
Query: 50 CPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFI 102
P+ +F ++T V L+D+ +++ + S+S AD W+ A E+
Sbjct: 67 IPLEQFLDEKGELTVKVGDEVQVFLEDTEESSGQVKISKSKADKIRIWEEIAAVCETERT 126
Query: 103 YEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
G++ GGL V + FLP Q+ + +K I G V++
Sbjct: 127 IVGRVVARVKGGLQVDI-GVPAFLPGSQVD-LRPVRNFEKYI--------GESFEFNVLK 176
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNV-------EDIFVGR-----DYGAFIHLRFPDGLY 210
N + +V S K + + R N+ +FVG DYGAFI L DGL
Sbjct: 177 YNRKRGNIVLSRKPLLEKQKEERKNLILGTMEGSGLFVGTVKNITDYGAFIDLGGIDGL- 235
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+H++++SW I D+L GD+++VKV+K D++K R++L +KQ++ DP E +E
Sbjct: 236 -----LHITDMSWGRINHPSDVLKVGDQIQVKVLKFDQDKERVSLGMKQIQPDP-WENVE 289
Query: 271 KVIPQ 275
+ P+
Sbjct: 290 ERYPK 294
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 103 YEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ GK+ G+ V V G + +M+ + + P K + G + V V+
Sbjct: 298 WTGKVVSITDYGVFVELEKGVEGLVHISEMTWTKKPRHPSKLVQ------VGDEVDVMVL 351
Query: 162 QANEEMKKLVFSEK-------DAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLT 213
++E K++ K D + +Y +E I D+G F+ + +
Sbjct: 352 NVDKEQKRISLGMKQLKPNPWDVIAERYPEGTKIEGKIRNVTDFGVFVGID-----EGID 406
Query: 214 GLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
GLVH+S++SW I+ ++ +G V+ V+ ID+E R +L IKQ++EDP ET+
Sbjct: 407 GLVHISDISWTQRIKHPGELYKKGQTVQAVVLNIDKENERFSLGIKQMQEDP-WETIPDR 465
Query: 273 IPQG 276
P G
Sbjct: 466 YPPG 469
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I VKV++ +++ +++ K W R E + G+ DYG F+ L
Sbjct: 256 GDQIQVKVLKFDQDKERVSLGMKQIQPDPWENVEERYPKESEWTGKVVSITDYGVFVELE 315
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+SE++W + ++ GDEV V V+ +D+E+ RI+L +KQL+ +
Sbjct: 316 -----KGVEGLVHISEMTWTKKPRHPSKLVQVGDEVDVMVLNVDKEQKRISLGMKQLKPN 370
Query: 264 P 264
P
Sbjct: 371 P 371
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
A Y E G EGKI+ G+ V + G + +S + K P + KG
Sbjct: 376 AERYPE-GTKIEGKIRNVTDFGVFVGIDEGIDGLVHISDISWTQRIKHPGELY---KKGQ 431
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
T + + + + NE + ++ W R G+ D+G F+ +
Sbjct: 432 TVQAVVLNIDKENERFSLGIKQMQEDPWETIPDRYPPGAKVRGKVTSVTDFGVFLEIE-- 489
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G++HVSE+S + + D EG+E+ V+K++++ +I LSIK LE
Sbjct: 490 ---EGIEGMIHVSELSKERVNSPSDFTKEGEELTAMVLKVNKKDKKIALSIKSLE 541
>gi|126669095|ref|ZP_01740026.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
gi|126626450|gb|EAZ97116.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
Length = 455
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIIS 157
G I G GG V + FLP P +H KE + + ++ + ++S
Sbjct: 1 GIINGKVKGGFTVDLAGIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVS 60
Query: 158 VKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLV 216
+ + E +E++A+ + + ++ I DYGAF+ L DGL H+T
Sbjct: 61 RRAVLEAENS-----AEREALLETLTEGLTIKGIVKNLTDYGAFVDLGGVDGLLHIT--- 112
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +E ++ P+G
Sbjct: 113 ---DMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSLGLKQLGEDPWVE-IKARYPEG 168
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V ++ +EE +++ K V W
Sbjct: 193 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVGVMILDIDEERRRISLGIKQCVSNPWE 246
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+S N D G+ D+G FI L DG + GLVH+S++SW+ + +R+
Sbjct: 247 DFSGNFNKGDRISGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-Y 300
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDEV ++ +D E+ RI+L IKQLE DP E
Sbjct: 301 KKGDEVDTVILSVDPERERISLGIKQLESDPFAE 334
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A G +G ++ G V + G L M+ K P +
Sbjct: 66 EAENSAEREALLETLTEGLTIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 124
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + +R R
Sbjct: 125 IVN------VGDEINVKVLKFDRERNRVSLGLKQLGEDPWVEIKARYPEGSKVTARVTNL 178
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ R
Sbjct: 179 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRR 232
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 233 ISLGIKQCVSNP 244
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K + + + L+
Sbjct: 364 EVEAILKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQALD 423
Query: 271 KVIPQGLE 278
V + +E
Sbjct: 424 TVRTKTVE 431
>gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443634904|ref|ZP_21119076.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443345329|gb|ELS59394.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 382
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEEAP 348
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K P + EKV P
Sbjct: 256 KDTLPGPWSQIGEKVKP 272
>gi|334131900|ref|ZP_08505662.1| 30S ribosomal subunit protein S1 [Methyloversatilis universalis
FAM5]
gi|333443373|gb|EGK71338.1| 30S ribosomal subunit protein S1 [Methyloversatilis universalis
FAM5]
Length = 558
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 26/213 (12%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W G I +G + G GGL V R F SLV P +
Sbjct: 85 RDKAKRIAAWNELEKALGDGSIVKGLVSGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTT 144
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVI---QANEEMKKLVFSEKDAVWNKYSSRVNVE 189
P + KE + + ++ + ++S + + A EE +KL+ + K+ K V+
Sbjct: 145 P-YEGKEFEFKVIKLDRKRNNVVVSRRAVLELTAGEEREKLLETLKEGTVVKGI----VK 199
Query: 190 DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
+I DYGAF+ L DGL +H+++++W ++ ++L GDEV KV+K D E
Sbjct: 200 NIT---DYGAFVDLGGIDGL------LHITDLAWRRVRHPSEVLAVGDEVEAKVLKFDAE 250
Query: 250 KSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
K+R++L +KQL EDP + + + PQG + K
Sbjct: 251 KNRVSLGLKQLGEDPWV-GISRRYPQGTRLFGK 282
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 SRRYPQGTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNIHPTKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V +++ +E+ +++ K + W +S D G+ D+G FI L
Sbjct: 323 LGDEVEVMILEIDEDRRRISLGMKQCMPNPWEDFSMNHKKGDKVRGQIKSITDFGVFIGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ GLVH+S++SW L + +R+ +GDEV V+ ID E+ RI+L +KQL+
Sbjct: 383 TGA-----IDGLVHLSDLSWSLAGEEAVRN-YKKGDEVEAVVLSIDVERERISLGVKQLD 436
Query: 262 EDPL 265
DP
Sbjct: 437 GDPF 440
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
G + SE S D ++D+ ILN GDEV ++ +DR+ ITLS++ ++ + ++K+
Sbjct: 475 GYLRASEASRDRVEDLTTILNVGDEVEAMIVNLDRKTRSITLSVRAKDQAEQNDAIQKIQ 534
Query: 274 PQG 276
+G
Sbjct: 535 AEG 537
>gi|427701380|ref|YP_007044602.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427344548|gb|AFY27261.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 395
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ G + + ++ GFN GG+ L GF+P Q++ + HE
Sbjct: 200 WEKVRQLEKEGKVVQVRVNGFNRGGVTCDLEGLRGFIPRSQLNEGEN--------HEA-- 249
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A + + V + G + YG F+ L
Sbjct: 250 -LVGQTLGVAFLEVNAETRKLVLSEKRAATAARFATLEVGQLVEGQVVSIKPYGFFVDL- 307
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++D+R+ +G+ ++ + +D + RI L+ LE P
Sbjct: 308 -----GGVSGLLHQSSITGGALRDLREAFQQGEHLKALITAVDPARGRIALNTALLEGPP 362
>gi|406959737|gb|EKD87007.1| hypothetical protein ACD_37C00076G0003 [uncultured bacterium]
Length = 343
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 20/213 (9%)
Query: 70 ILDDSSDANNRQSQSRSSAD---WKAARAYKESGFIYEGKIQGFNGGGLLVRF-FSLVGF 125
+L+ SD N R D WK K+ I + + GG LV + GF
Sbjct: 70 VLNPESDQGNPVVSLRRFIDGRVWKELDRLKQGEVILQVTVNDLTKGGFLVSTPDGISGF 129
Query: 126 LPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
LP Q +++ A+ G I+ V++ N + K++FS+K AV ++ S+
Sbjct: 130 LP-----------NSQAILNDSAQSFLGKKINAIVLELNRALHKIIFSQKGAVGDEAFSK 178
Query: 186 VNVEDIFVGRDYGAFIHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 241
+ G A + P G++ L G +H+SE+SWD + + G++++
Sbjct: 179 AT-SVVRSGEKVDAVVSSTTPFGIFVSVKGLEGFIHLSELSWDKTETAENYFKVGEKIQA 237
Query: 242 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
+V+ ID++ R+ LSIK+L DP E + P
Sbjct: 238 EVLGIDKDAKRVNLSIKRLTIDPFQEASKSFTP 270
>gi|338175954|ref|YP_004652764.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae UV-7]
gi|336480312|emb|CCB86910.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae UV-7]
Length = 590
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 33/244 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYE 104
L P+ +FS + + V +LD + D N + SR A+ W+ + E G I +
Sbjct: 76 LVPMEEFSDPSQIVLDGEVEVLLDQAEDDNGQIVLSREKAERLRQWEYILQHCEEGSIVK 135
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G++ GGL+V + FLP Q+ K I + + + K+++ N
Sbjct: 136 GRVLRKVKGGLMVDI-GMEAFLPGSQID--------NKRIKNLDDYIDKTY-EFKILKIN 185
Query: 165 EEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVGR-----DYGAFIHLRFPDGLYHL 212
E K +V S ++ + + S R+ DI G D+G F+ L DG+
Sbjct: 186 IERKNVVVSRRELLEAERVSKKAEVLERIQEGDIREGTVKNITDFGVFLDL---DGI--- 239
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
GL+H+++++W I+ +++ GD+++VK++ ID+EK R+ L +KQ E +P + +E+
Sbjct: 240 DGLLHITDMTWKRIKHPSEMVQLGDKLKVKILSIDKEKGRVALGLKQKEPNP-WDQIEQK 298
Query: 273 IPQG 276
P G
Sbjct: 299 YPPG 302
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I EG ++ G+ + + G L M+ K P + + G +
Sbjct: 215 QEGDIREGTVKNITDFGVFLDLDGIDGLLHITDMTWKR-IKHPSEMVQ------LGDKLK 267
Query: 158 VKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-DYGAFIHLRFPDGL 209
VK++ ++E ++ K D + KY V+ V YGAFI +
Sbjct: 268 VKILSIDKEKGRVALGLKQKEPNPWDQIEQKYPPGTRVKGKIVNLLPYGAFIEIE----- 322
Query: 210 YHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+HVSE+SW + D D++ +GDEV V+ + +++ +I+L IKQ E +P
Sbjct: 323 PGIEGLIHVSEMSWVKNVTDPSDVVKKGDEVEAIVLSVQKDEGKISLGIKQTEHNP 378
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 176 DAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDIL 233
D V NKY NV+ +I +YGAF+ L + GL+H+S++SW + ++L
Sbjct: 380 DDVQNKYQVGTNVKAEIKSLTNYGAFVELE-----PGVEGLIHISDLSWIKKVSHPSEVL 434
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+GD V ++ +D++ +ITL +KQL ++P E++EK +P G
Sbjct: 435 RKGDVVDAVILSVDKDSKKITLGVKQLSDNP-WESIEKTMPVG 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G ++ ++ +++ KK+ K D W + V + G +GAF+ L
Sbjct: 437 GDVVDAVILSVDKDSKKITLGVKQLSDNPWESIEKTMPVGTLVKGVVSKITAFGAFVELE 496
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GL+HV+E+S + D++ +GDEV KVIK+D E +I LSIK+
Sbjct: 497 -----SGIEGLIHVTELSDKAFGKVEDVVAKGDEVIAKVIKLDPEYKKIALSIKE 546
>gi|359784369|ref|ZP_09287541.1| 30S ribosomal protein S1 [Halomonas sp. GFAJ-1]
gi|359298329|gb|EHK62545.1| 30S ribosomal protein S1 [Halomonas sp. GFAJ-1]
Length = 559
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK A E + +G I G GG V S+ FLP P
Sbjct: 86 REKAKRAEA-WKVLEAAFEKDEVIKGVINGKVKGGFTVEVDSIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + ++ ++S + + E +E++A+ ++ I
Sbjct: 145 AHLENKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDP 264
R++L +KQL EDP
Sbjct: 254 RVSLGLKQLGEDP 266
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LSIK E+D + L+K
Sbjct: 474 VIAILKASEISADRVEDARNVLNEGDSVEARIVNVDRKSRQINLSIKAKEQDDTRQNLKK 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 LRDQ 537
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G D+G FI L + GLVH+S++SW + +R+
Sbjct: 354 WETFNAEYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTETGEEAVRN 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQ++ DP+ E L
Sbjct: 409 -FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYL 445
>gi|410612211|ref|ZP_11323291.1| small subunit ribosomal protein S1 [Glaciecola psychrophila 170]
gi|410168212|dbj|GAC37180.1| small subunit ribosomal protein S1 [Glaciecola psychrophila 170]
Length = 556
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY E I G I G GG V ++ FLP + +
Sbjct: 86 REKAKRHEAWVELEKAYTEKETII-GVINGKVKGGFTVEVNTVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVG 194
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDTLLANLEEGHEV 195
Query: 195 R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EKSR++L +KQ+ DP E + P+G
Sbjct: 250 KEKSRVSLGMKQMGNDPWQEIANR-YPEG 277
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K + W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVCEVMVLEIDEERRRISLGLKQCIPNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+++ + D G+ D+G FI L DG + GLVH+S++SW+ ++
Sbjct: 356 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEEAVSDYK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ+EEDP
Sbjct: 411 KGDEISAVVLQVDPERERISLGVKQIEEDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDTLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
++ G I+VKV++ ++E MK++ + N+Y +
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVCEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ +P E
Sbjct: 342 ISLGLKQCIPNPWEE 356
>gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
Length = 422
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R ++ G + + K+ GFN GG+ L GF+P Q+ + HE
Sbjct: 227 WEKVRVLEKEGKVVQVKVNGFNRGGVTCDLEGLRGFIPRSQLQEGEN--------HEA-- 276
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A + + V + G + YG F+
Sbjct: 277 -LVGKTLGVTFLEVNPETRKLVLSEKRAATAARFAELEVGQLVEGVVASIKPYGFFVD-- 333
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L ++GL+H S V+ ++D+R+ ++G+ + + +D + RI L+ LE P
Sbjct: 334 ----LGGISGLLHHSCVTGAELRDLREAFSQGERLSALITDLDPGRGRIALNTALLEGQP 389
Query: 265 --LLETLEKVIPQ 275
LL E+V+ +
Sbjct: 390 GELLVEKERVMAE 402
>gi|90581253|ref|ZP_01237051.1| 30S ribosomal protein S1 [Photobacterium angustum S14]
gi|90437624|gb|EAS62817.1| 30S ribosomal protein S1 [Vibrio angustum S14]
Length = 556
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWIQLEKAYEDAETVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTAH-----LENKELEFKVIKLDQKRNNVVVSRRAVIESENSVERDELLASLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DRE++R++L +KQL EDP
Sbjct: 249 DRERTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y ES + G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPESTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLE-----GGIDGLVHLSDISWNVSGEDAVRD-FKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQIEEDPF 441
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Clostridium ultunense Esp]
Length = 440
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+G +E I GGL V L GF+P Q+ +++ E
Sbjct: 147 WEVLSQRFENGETFETTIVDVVKGGL-VADVGLRGFIPASQV---------ERNYVEDFS 196
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DY 197
G + VKVI+ + E +++ S + + + +R+ + GR D+
Sbjct: 197 DYKGKPLKVKVIELDRENNRVILSHRAVLEEEAERRKKEVLNRLEAGQVVEGRVERITDF 256
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ L DGL +H+SE+SWD ++ D ++ GD V+VKV+K+DRE RI+LS+
Sbjct: 257 GAFVDLGGVDGL------IHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSL 310
Query: 258 KQLEEDPLLETLEKVIP----QGLEPYLKSF 284
K + P + + + P +G+ L SF
Sbjct: 311 KATQPSPWEKAAQSIKPGDVVKGIVRRLPSF 341
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 20/181 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E+G + EG+++ G V + G + ++S H +K+ ++ G I+
Sbjct: 241 EAGQVVEGRVERITDFGAFVDLGGVDGLIHISELSWDHV----EKATDAVS---VGDIVK 293
Query: 158 VKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VKV++ + E +++ S K + W K + + D+ G +GAF+ L +
Sbjct: 294 VKVLKVDRENERISLSLKATQPSPWEKAAQSIKPGDVVKGIVRRLPSFGAFVEL-----M 348
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+ GLVHVS++S + ++L EG EV VKV+ + E RI+LS+K+LEE P+ E+
Sbjct: 349 PGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFNLEDKRISLSMKELEEAPVPESK 408
Query: 270 E 270
E
Sbjct: 409 E 409
>gi|398311236|ref|ZP_10514710.1| 30S ribosomal protein S1 [Bacillus mojavensis RO-H-1]
Length = 382
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G+ +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWSQVGEKVKPGDVLEGKVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 99/197 (50%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQDLLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K+ P + EKV P
Sbjct: 256 KETLPGPWSQVGEKVKP 272
>gi|387770311|ref|ZP_10126494.1| ribosomal protein S1 [Pasteurella bettyae CCUG 2042]
gi|386904673|gb|EIJ69462.1| ribosomal protein S1 [Pasteurella bettyae CCUG 2042]
Length = 549
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 67 VNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
VN LD D SR A W + +AY+E + G I G GG V
Sbjct: 69 VNVALDAVEDGYGETKLSREKAVRHESWIELEKAYEEQATVI-GLINGKVKGGFTVELNG 127
Query: 122 LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------- 173
+ FLP + + + ++H L G + KVI+ +++ +V S
Sbjct: 128 VRAFLPGSLVD----TRPVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESE 178
Query: 174 ---EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI 229
++D V + V+ DYGAF+ L DGL H+T +++W ++
Sbjct: 179 SNQDRDEVLANLAEGTEVKGTVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHP 232
Query: 230 RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+I+N GDE+ VKV+K D++++R++L +KQL +DP
Sbjct: 233 SEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDP 267
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G GK+ G V V G + +M ++ P K +
Sbjct: 268 WVAIAQNHPVGSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS--- 324
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G ++ V V++ +EE +++ K WN+++ N D G+ D+G F
Sbjct: 325 ---LGDVVEVMVLEIDEERRRISLGLKQCKANPWNQFAETHNKGDKVEGKIKSITDFGIF 381
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L + GLVH+S++SW++ + +R+ +GD+V V+++D K RI+L IK
Sbjct: 382 IGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDDVAAVVLQVDAVKERISLGIK 435
Query: 259 QLEEDPL 265
QLEEDP
Sbjct: 436 QLEEDPF 442
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S S+ D A G +G ++ G V + G L M+ K P +
Sbjct: 176 ESESNQDRDEVLANLAEGTEVKGTVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 234
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ +++ ++ K W + V G+
Sbjct: 235 IVN------VGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAQNHPVGSKLTGKVTNL 288
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ R
Sbjct: 289 TDYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRR 342
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 343 ISLGLKQCKANP 354
>gi|182418532|ref|ZP_02949820.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
butyricum 5521]
gi|237667880|ref|ZP_04527864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182377624|gb|EDT75172.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
butyricum 5521]
gi|237656228|gb|EEP53784.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 634
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ +G+++ F G V + G L Q+S +H K I ++ K G I+ VK+I
Sbjct: 480 VVKGEVKRFTDFGAFVEINGVDGLLHLSQISWNHV-----KKIEDVLK--IGQIVDVKII 532
Query: 162 QANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLT 213
++E KKL S K+ + W+ + + I +G+ +GAF+ L P +
Sbjct: 533 GLDKETKKLSLSMKELMAKPWDNVKEKYPEDSIVLGKVVRLSKFGAFVELE-PG----VD 587
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
GLVH+S++S + I+D +L G E++ K++ +D E RI+LSIK +
Sbjct: 588 GLVHISKISHERIEDPAQVLTIGQEIKAKILSVDEENKRISLSIKDI 634
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 86 SSADWKAARAYKE------SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
S +++ A+KE G +E KI GL + + F+P Q+ + ++
Sbjct: 370 SRLEYEKEEAFKELEVLFNEGKTFEIKINEAKDKGLAGNYKGIRVFVPASQIDVKFT-ED 428
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR---- 195
++ +++ + + K I+ + L+ K+ + K N+ D+ G
Sbjct: 429 KEQYLNQTLEVKLIDFSTAKPIKVVASRRALLEKAKNEMETKAWESFNLNDVVKGEVKRF 488
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
D+GAF+ + DGL HL S++SW+ ++ I D+L G V VK+I +D+E +++
Sbjct: 489 TDFGAFVEINGVDGLLHL------SQISWNHVKKIEDVLKIGQIVDVKIIGLDKETKKLS 542
Query: 255 LSIKQLEEDPLLETLEK 271
LS+K+L P EK
Sbjct: 543 LSMKELMAKPWDNVKEK 559
>gi|374702050|ref|ZP_09708920.1| 30S ribosomal protein S1 [Pseudomonas sp. S9]
Length = 561
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYE 104
+ P+ +F ++T V+ LD D SR A E+ F E
Sbjct: 46 GVIPLEQFFNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAE 105
Query: 105 ----GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVTGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKTNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLEEDP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEEDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R V R
Sbjct: 234 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVVARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKTNP 353
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+EV K+I +DR+ I+LSIK
Sbjct: 481 SEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVISLSIK 520
>gi|157692789|ref|YP_001487251.1| 30S ribosomal protein S1 [Bacillus pumilus SAFR-032]
gi|157681547|gb|ABV62691.1| ribosomal protein S1 [Bacillus pumilus SAFR-032]
Length = 383
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S +H ++P + E G +
Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAH-VEKPSDVVEE------GQEVQ 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLAVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ ++ RI+LSI+ LEE+P
Sbjct: 294 PGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDEERISLSIRDLEENP 348
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLERKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHYVED--------FS 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNK-------YSSRVNVEDIFVGR-----DY 197
G +S+ V++ + E +++ S + V + + ++ V + G+ D+
Sbjct: 142 DYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL H++ L H ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGLVHISQLSHAH------VEKPSDVVEEGQEVQVKVLAVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|332284738|ref|YP_004416649.1| transcription accessory protein [Pusillimonas sp. T7-7]
gi|330428691|gb|AEC20025.1| transcription accessory protein [Pusillimonas sp. T7-7]
Length = 571
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 30/243 (12%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ A ++ + + D + +++ + W ESG + G I G
Sbjct: 68 GELEVEAGDFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALESGEMVNGTITGKVK 127
Query: 113 GGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA 163
GGL V R F SLV P +P + K + + ++ + ++S + V++A
Sbjct: 128 GGLTVMTNGIRAFLPGSLVDLRPVKDTTP-YEGKTMEFKVIKLDRKRNNVVLSRRAVLEA 186
Query: 164 N--EEMKKLV--FSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVS 219
+ EE +KL+ SE V + V++I DYGAF+ L DGL H+T
Sbjct: 187 SMGEERQKLLETLSEGAVV------KGVVKNI---TDYGAFVDLGGIDGLLHIT------ 231
Query: 220 EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEP 279
+++W ++ ++L G EV KV+K D+EKSR++L +KQL EDP + L + PQG
Sbjct: 232 DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPWV-GLARRYPQGTRL 290
Query: 280 YLK 282
+ K
Sbjct: 291 FGK 293
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V + + G + +M ++ +P+K +
Sbjct: 281 ARRYPQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVT------ 333
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +E+ +++ K W ++S D G D+G F+ L
Sbjct: 334 LGDEVEVMVLEIDEDRRRISLGMKQCRANPWEEFSINFKRGDKVRGAIKSITDFGVFVGL 393
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 394 --PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIDAVVLGIDTDKERISLGIKQLE 447
Query: 262 EDPL 265
DP
Sbjct: 448 GDPF 451
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
G + SE+S ++D +LN GD V +I IDR+ I LSIK + +T++++
Sbjct: 486 GYLRASEISTGRVEDASTVLNVGDTVDTMIINIDRKTRSIQLSIKARDNADTADTIQRM 544
>gi|285018380|ref|YP_003376091.1| 30S ribosomal protein S1 [Xanthomonas albilineans GPE PC73]
gi|283473598|emb|CBA16101.1| 30s ribosomal protein s1 [Xanthomonas albilineans GPE PC73]
Length = 559
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F A +I V +LD + SR A W E
Sbjct: 48 IVPIEQFRNEAGEIDVAEGDLVKVVLDSLENGFGETVLSRDKARRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TIVGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPS--------CLDGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S ++N I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLNEGTILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|194016705|ref|ZP_03055318.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
7061]
gi|194011311|gb|EDW20880.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
7061]
Length = 383
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S +H ++P + E G +
Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAH-VEKPSDVVEE------GQEVQ 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W++ +V D+ G +GAF+ + L
Sbjct: 239 VKVLAVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ ++ RI+LSI+ LEE+P
Sbjct: 294 PGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDEERISLSIRDLEENP 348
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHYVED--------FS 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNK-------YSSRVNVEDIFVGR-----DY 197
G +S+ V++ + E +++ S + V + + ++ V + G+ D+
Sbjct: 142 DYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL H++ L H ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGLVHISQLSHAH------VEKPSDVVEEGQEVQVKVLAVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKV 272
K+ P + EKV
Sbjct: 256 KETLPGPWSQIGEKV 270
>gi|319956088|ref|YP_004167351.1| 30S ribosomal protein s1 [Nitratifractor salsuginis DSM 16511]
gi|319418492|gb|ADV45602.1| SSU ribosomal protein S1P [Nitratifractor salsuginis DSM 16511]
Length = 556
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-- 178
L FL ++S + K P+ ++ G I V+VI+ + E ++L S K +
Sbjct: 306 DLEAFLHVSEISWDKNVKHPKDFLN------VGDEIDVEVIEIDREKRRLRVSRKSLLPK 359
Query: 179 -WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 232
+++ + V DI G D+GAF+ L DG + GL+H E SWD + +D+
Sbjct: 360 PMEEFAQKHRVGDIVTGTVSSVTDFGAFVRL---DG--GVEGLLHNQEASWDKSKRAKDL 414
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
N GDEV VK+IKID + +I+LS K LE+ P+
Sbjct: 415 FNVGDEVEVKIIKIDTDAGKISLSKKALEKSPV 447
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G+ V + G + + Q+S P K E G ++V + +
Sbjct: 204 GTVKKITSYGMFVDVGGMDGLVHYSQISHKGPVN-PSKYYQE------GDEVNVVALDYD 256
Query: 165 EEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLV 216
++ + L S K+A W + V D YG F+ L L +
Sbjct: 257 KKKRHLSLSIKEANPDPWENIDEILGVGDTVTATVSNIEPYGVFVDLG-----EDLEAFL 311
Query: 217 HVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
HVSE+SWD ++ +D LN GDE+ V+VI+IDREK R+ +S K L P+ E +K
Sbjct: 312 HVSEISWDKNVKHPKDFLNVGDEIDVEVIEIDREKRRLRVSRKSLLPKPMEEFAQK 367
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 45/225 (20%)
Query: 77 ANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP----FPQMS 132
A RQ+ + ++ + Y I EG + N GG +V L FLP +
Sbjct: 97 AKKRQAMNEFIEEYDENQEY-----IVEGTVTKKNKGGYVVDVDGLEFFLPRTLSYLSSK 151
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVI------QANEEMKKLVFSEKDAVWN--KYSS 184
K+ + I ++ K +IS K + + NE ++KL+ S++ V K +S
Sbjct: 152 TDAIGKKVKGVIVKVDKDKGSVVISRKELIERDKARVNEIVEKLLESKEPVVGTVKKITS 211
Query: 185 RVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
YG F+ + DGL H + + H V+ EGDEV V +
Sbjct: 212 ------------YGMFVDVGGMDGLVHYSQISHKGPVNP------SKYYQEGDEVNVVAL 253
Query: 245 KIDREKSRITLSIKQLEEDPLLETLEKVIPQG---------LEPY 280
D++K ++LSIK+ DP E +++++ G +EPY
Sbjct: 254 DYDKKKRHLSLSIKEANPDP-WENIDEILGVGDTVTATVSNIEPY 297
>gi|226323894|ref|ZP_03799412.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
gi|225207443|gb|EEG89797.1| S1 RNA binding domain protein [Coprococcus comes ATCC 27758]
Length = 253
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 38/202 (18%)
Query: 81 QSQSRSSAD----------WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
Q Q+ S AD W Y+E G K++G GG++ L GF+P +
Sbjct: 7 QEQTESMADYEAHFDDANPWNVVARYQEEGTNLHVKVEGIVNGGVIAMVEGLRGFIPASR 66
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYS 183
+S S+ I ++ L I V+VI+AN+ +L+ S +K A K
Sbjct: 67 LSLSY--------IEDLETYLLKEI-DVRVIEANQAEGRLILSAREILREQKKAEDAKKL 117
Query: 184 SRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 238
+ V V + G + YGAF+ R +GL +GLVH+S++S I+ +L+ GDE
Sbjct: 118 ASVQVGSVVKGTVESLQSYGAFV--RLENGL---SGLVHISQISTQRIKSADQVLHVGDE 172
Query: 239 VRVKVIKIDREKSRITLSIKQL 260
V VKVI I + +I+LSIK L
Sbjct: 173 VDVKVIGI--KDGKISLSIKAL 192
>gi|72119667|gb|AAZ61930.1| SSU ribosomal protein S1P [Ralstonia eutropha JMP134]
Length = 592
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ A ++ + + D + +++ A W E G I G + G
Sbjct: 91 GELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVTGKVK 150
Query: 113 GGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA 163
GGL V R F SLV P +P + K + + ++ + ++S + V++A
Sbjct: 151 GGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEA 209
Query: 164 --NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSE 220
EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 210 TLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL----- 256
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPY 280
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG +
Sbjct: 257 -AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQGTRLF 314
Query: 281 LK 282
K
Sbjct: 315 GK 316
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 304 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 356
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 357 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLSGQIKSITDFGVFIGL 416
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 417 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 471
Query: 263 DPL 265
DP
Sbjct: 472 DPF 474
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
G + SE+S D ++D R++L EG+++ V+ +DR+ I LSIK + E ++K
Sbjct: 509 GYLRASEISADRVEDARNVLKEGEQITALVVNVDRKSRNINLSIKAKDNVEQQEAMQK 566
>gi|338999915|ref|ZP_08638551.1| 30S ribosomal protein S1 [Halomonas sp. TD01]
gi|338763336|gb|EGP18332.1| 30S ribosomal protein S1 [Halomonas sp. TD01]
Length = 558
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPF------PQMSP 133
R+ R+ A WK A E + +G I G GG V S+ FLP P
Sbjct: 86 REKAKRAEA-WKILEAAFEKDEVVKGVINGKVKGGFTVDVDSIRAFLPGSLVDVRPVRDT 144
Query: 134 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
+H KE + ++ ++S + + E +E++A+ ++ I
Sbjct: 145 AHLENKELDFKVIKLDPKRNNVVVSRRAVLEAENS-----AEREALLATLQEGQQIKGIV 199
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++
Sbjct: 200 KNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERN 253
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQL EDP + ++ P+G
Sbjct: 254 RVSLGLKQLGEDPWVNIKDR-YPEG 277
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D I+D R++LNEGD + +++ +DR+ +I LS+K E+D + L+K
Sbjct: 474 VIAILKASEISADRIEDARNVLNEGDSIEARIVSVDRKSRQINLSVKAKEQDDTRQNLKK 533
Query: 272 VIPQ 275
+ Q
Sbjct: 534 LRDQ 537
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G D+G FI L + GLVH+S++SW + +R+
Sbjct: 354 WETFNAEYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTETGEEAVRN 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQ++ DP+ E L
Sbjct: 409 -FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYL 445
>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
Length = 387
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-SCKEPQKSIHE 146
A W R + + + N GGLLV L GF+P SH + + P +
Sbjct: 162 AAWNRCREMQANDEAVNSVVLSVNRGGLLVEVEHLRGFVP-----QSHIAMRVPNRD--- 213
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFI 201
L G + VK ++ +EE +LV S + A + V D+ G + YGAF+
Sbjct: 214 ---ELIGQSVPVKFLEVDEEKNRLVMSNRLATDVVSGEGLGVGDVCKGVVQAVKPYGAFV 270
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ ++GL+H+S++S D I + ++L GDE++V ++ D E+SR++LS K+LE
Sbjct: 271 DV------GGVSGLLHISQISHDRIVAVENVLAPGDELKVLILSKDAERSRLSLSTKKLE 324
Query: 262 EDP 264
P
Sbjct: 325 PSP 327
>gi|15839029|ref|NP_299717.1| 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
gi|9107629|gb|AAF85237.1|AE004052_12 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
Length = 569
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 59 IVPIEQFRNDAGEIDVGVGDQVKVALDAIENGFGETILSREKAKRSMVWDELEEALEKNE 118
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 119 TISGRINGKVKGGFTVDIKDVRAFLP-ASLVDVRPVRDPAY--------LEGKELEFKLI 169
Query: 162 QANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+ + + +V S + V +++S ++ + G DYGAF+ L DGL
Sbjct: 170 KLDRKRNNVVVSRRAVVESEHSEEREQLLDKLQEGAVLTGTVKNMTDYGAFVDLGGVDGL 229
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDEV V+V+K DRE++R++L +KQL EDP
Sbjct: 230 LHIT------DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSLGLKQLGEDP 278
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + V G + +M ++ P K + G + V ++
Sbjct: 294 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQ------VGDEVEVMILDV 347
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W ++ D G+ D+G FI L DG + GL
Sbjct: 348 DEERRRISLGMKQVAANPWETFALTHKKGDKVSGQVKSITDFGIFIGL---DG--GIDGL 402
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+H+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+DP
Sbjct: 403 LHLSDISWNTTGEDIVRNFKKGDTLETVVLAVDPERERISLGVKQLEQDPF 453
>gi|440509953|ref|YP_007347389.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
640]
gi|440454166|gb|AGC03658.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
640]
Length = 564
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ + T++ + D + + +++ W ++ G I G
Sbjct: 58 GELEISIGDYVDVTLDAVEDGFGETVLSREKAKRYESWVLLEKAHQNMTTVTGIINGKVK 117
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GG V + FLP + K I + + L G KVI+ + + +V
Sbjct: 118 GGFTVELNGVRAFLPGSLVDV--------KPIRDTSF-LEGQAFEFKVIKLDHKRNNVVV 168
Query: 173 S-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S E+D + N+ + + + DYGAFI L DGL H+T +
Sbjct: 169 SRRAVIESENSVERDQLLNQLHEGIEIRGVVKNLTDYGAFIDLGGVDGLLHIT------D 222
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++W ++ DI+N GDE+ VKV++ DRE+ R++L +KQL EDP
Sbjct: 223 MAWKRVKHPSDIVNVGDEIIVKVLRFDRERIRVSLGLKQLGEDP 266
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A + G G++ G + V G + +M ++ P K +
Sbjct: 267 WAAIVQRHKEGSKLIGQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVV---- 322
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V+ ++E +++ K W K+S N D +GR D+G F
Sbjct: 323 --TVGESVEVMVLDIDKERRRISLGLKQCKINPWQKFSDMYNRGDRVMGRIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L + GLVH+S++SW L ++ + +GDE+ V+++D E+ RI+L IKQ
Sbjct: 381 IGLEGG-----IDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQVDAERERISLGIKQ 435
Query: 260 LEEDPL 265
L EDPL
Sbjct: 436 LTEDPL 441
>gi|410630753|ref|ZP_11341440.1| small subunit ribosomal protein S1 [Glaciecola arctica BSs20135]
gi|410149719|dbj|GAC18307.1| small subunit ribosomal protein S1 [Glaciecola arctica BSs20135]
Length = 556
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY E I G I G GG V ++ FLP + +
Sbjct: 85 SREKAKRHEAWVELEKAYTEKETII-GIINGKVKGGFTVEVNTVRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERDTLLANLEEGHE 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
D+EKSR++L +KQ+ DP E + P+G
Sbjct: 249 DKEKSRVSLGMKQMGNDPWQEIANR-YPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K ++ G + V V++ +EE +++ K + W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVN------LGDVCEVMVLEIDEERRRISLGLKQCIPNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+++ + D G+ D+G FI L DG + GLVH+S++SW+ + +RD
Sbjct: 356 EFAKAQSKGDKVSGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEEAVRD-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQ+EEDP
Sbjct: 410 KKGDEISAVVLQVDPERERISLGVKQIEEDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERDTLLANLEEGHEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
++ G I+VKV++ ++E MK++ + N+Y +
Sbjct: 234 IVN------VGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNL 287
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVCEVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ +P E
Sbjct: 342 ISLGLKQCIPNPWEE 356
>gi|260893017|ref|YP_003239114.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ammonifex
degensii KC4]
gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
KC4]
Length = 654
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 34/215 (15%)
Query: 74 SSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFP 129
+ DA R S++ AD WK +G EG ++ GGL+V + FLP
Sbjct: 354 AEDAEGRIILSKARADAIAAWKKLAEAFANGTPVEGIVREVVKGGLIVDV-GVRAFLPAS 412
Query: 130 QMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV----------- 178
+ S+ + ++ L G + KVI+ + KK+V S K +
Sbjct: 413 LVDISY--------VENLSTYL-GQKVRAKVIELDRSRKKVVLSRKAVLEEEAERRRRET 463
Query: 179 WNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 236
W K V+ + V R +GAFI L DGL +HVSE++W + ++L EG
Sbjct: 464 WEKLQEGAVVKGV-VRRIVPFGAFIDLGGVDGL------LHVSEIAWHRVNSPDEVLKEG 516
Query: 237 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
E+ VKVIK+DRE +++LS K L DP + EK
Sbjct: 517 QEIEVKVIKVDRENEKVSLSRKALLPDPWEKVPEK 551
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G + + G L +++ H P + + E G I
Sbjct: 468 QEGAVVKGVVRRIVPFGAFIDLGGVDGLLHVSEIA-WHRVNSPDEVLKE------GQEIE 520
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVE---DIFVGR--DYGAFIHLRFPDGL 209
VKVI+ + E +K+ S K + W K + V ++ V R +GAF+ L
Sbjct: 521 VKVIKVDRENEKVSLSRKALLPDPWEKVPEKYPVGSLVEVKVVRLAPFGAFVELE----- 575
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GL+H+S + ++ D+L EGD V V+VI D ++ R+ LS+++
Sbjct: 576 PGVEGLIHISHFADWHVEKPEDVLKEGDVVTVRVISFDPQEKRLRLSLRE 625
>gi|409200055|ref|ZP_11228258.1| 30S ribosomal protein S1 [Pseudoalteromonas flavipulchra JG1]
Length = 555
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +A +E + G I G GG V S+ FLP + +
Sbjct: 85 SREKAKRHEAWIRLEKACEEQETVT-GVINGKVKGGFTVEVDSIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR- 195
+ + H L G + KVI+ +++ +V S + + ++ S ++++ G+
Sbjct: 140 PVRDTAH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREELLQNLVEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
D+EK+R++L +KQL EDP
Sbjct: 249 DKEKTRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WAAIAGRYPEGAKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVS--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K W +++ N D G+ D+G F
Sbjct: 324 ---LGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLNNKGDQVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +K
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERERISLGVK 434
Query: 259 QLEEDPLLETLE 270
Q++ DP L+
Sbjct: 435 QIDADPFTNYLD 446
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I+VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEINVKVLKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
+E ++ K + W + R GR DYG F+ + + GLV
Sbjct: 250 KEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ + +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQE 356
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA + L + + G + V++++ + ++D ++EGDE+ K + +DR+ I+LS+
Sbjct: 465 GATVEL-----IEGVEGYIRVADIAQERVEDATAAVSEGDEIEAKFVGVDRKNRTISLSV 519
Query: 258 KQL---EEDPLLETLEKVIPQGLEPYLKSFYK 286
K + EE +LE L+K P E + + +K
Sbjct: 520 KAIYEAEEKEVLEKLKKDEP-AFENAMAAAFK 550
>gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
Length = 703
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
EGK+ F G V + G L ++S K P + + G I+VK++
Sbjct: 500 EGKVMRFTEYGAFVDIGGVDGLLHISEISWG-KLKHPSEVL------TVGDTINVKILSL 552
Query: 164 NEEMKKLVFSEKDAV---W----NKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGL 215
N E K+ K + W +KY + NVE DI ++YGAF+ L L GL
Sbjct: 553 NPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVEGDIVQIKEYGAFLELE-----PGLDGL 607
Query: 216 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H+SE+S +++I +L+ GD V K+++ID+++ RI+LSIK L + P
Sbjct: 608 IHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRRISLSIKALIDPP 656
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 27/163 (16%)
Query: 114 GLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173
G++ + + GF+P Q+S + E A G + KVI+ ++++ K +FS
Sbjct: 423 GVIANYKEVSGFIPLSQLS---------ERFIEDASEFVGQTMEAKVIRVDQKLGKAIFS 473
Query: 174 -------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 221
EK+ + ++NV D G+ +YGAF+ + D GL+H+SE+
Sbjct: 474 PKQLQKEEKNKRLQELWKKLNVGDDIEGKVMRFTEYGAFVDIGGVD------GLLHISEI 527
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
SW ++ ++L GD + VK++ ++ EK +I+L KQ +P
Sbjct: 528 SWGKLKHPSEVLTVGDTINVKILSLNPEKGKISLGYKQNMPEP 570
>gi|288574973|ref|ZP_06393330.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570714|gb|EFC92271.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 512
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 26/164 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V SL GF+P ++ P K I E+ VK+++ + ++LV
Sbjct: 143 GGLMVDCCSLEGFIPISHLAEEGRGVNPGKFIDEV--------FDVKLLEKDRRKRRLVL 194
Query: 173 SEKDAVWNKY-SSRVNV-EDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSE 220
S + + + R N D+ G +G F++L DGL VH+SE
Sbjct: 195 SRRTILDEELKEQRENFYRDVTEGTVLEGTVSSLTSFGVFVNLGPIDGL------VHISE 248
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+SW +DI +GD V+VKVI ID+E +RI+LS+KQ + DP
Sbjct: 249 LSWQRNAKPKDIAKKGDTVKVKVIGIDQEHNRISLSVKQTQSDP 292
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G+ V + G + ++S + K P+ +IAK G + VK
Sbjct: 218 GTVLEGTVSSLTSFGVFVNLGPIDGLVHISELSWQRNAK-PK----DIAK--KGDTVKVK 270
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI ++E ++ S K W + R D G D+GAF+ +
Sbjct: 271 VIGIDQEHNRISLSVKQTQSDPWETITERWKDGDTATGTVTNVTDFGAFVEVE-----PG 325
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+ ++SW I+ ++++ +G EV V+ +D K R++L KQL DP
Sbjct: 326 IEGLIHIGDLSWTRIKHPKEVIKKGQEVETVVLNVDPVKKRLSLGYKQL-NDP 377
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ L + GL+H+S++S ++ D+L+EG EV +VI+++ + RI L
Sbjct: 400 DFGAFVELE-----KGVEGLIHISQLSTRRVEKPGDVLSEGQEVTARVIEVNPDDRRIRL 454
Query: 256 SIKQLEE 262
SI LEE
Sbjct: 455 SISALEE 461
>gi|289208391|ref|YP_003460457.1| 30S ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
gi|288944022|gb|ADC71721.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
Length = 556
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A W E GKI G GG V + FLP +
Sbjct: 85 SREKAKRAKA-WDRLEGAMEEEQYVTGKISGKVKGGYTVELGDIRAFLPGSLVDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFV 193
+ + + A L G + K+I+ + +V S + V +YS+ N+++ V
Sbjct: 139 ---RPVRDTAY-LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGAV 194
Query: 194 GR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
+ DYGAF+ L DGL H+T +++W ++ D++ G EV VKV+K
Sbjct: 195 VKGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWKRVKHPSDVVEIGQEVEVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
DRE+ R++L +KQL EDP E + + P G + K
Sbjct: 249 DRERMRVSLGLKQLGEDP-WENITRRYPTGTRIFGK 283
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 94 RAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
R Y I+ GK+ G V V G + +M ++ P K +
Sbjct: 272 RRYPTGTRIF-GKVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPGKVVA------I 324
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V ++ +EE +++ K W+ +++ N + G+ D+G F+ L
Sbjct: 325 GDEVEVMILDLDEERRRISLGMKQCQSNPWDDFAANHNRGEKVRGQIKSITDFGVFVGL- 383
Query: 205 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 --DG--GIDGLIHLSDLSWHEAGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLDR 438
Query: 263 DPL 265
DP
Sbjct: 439 DPF 441
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G + + G L M+ K P + G +
Sbjct: 190 QEGAVVKGIVKNLTDYGAFLDLGGIDGLLHITDMAWKR-VKHPSDVVE------IGQEVE 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R G+ DYG F+ + DG+
Sbjct: 243 VKVLKFDRERMRVSLGLKQLGEDPWENITRRYPTGTRIFGKVTNITDYGCFVEIE--DGV 300
Query: 210 YHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GLVHVSE+ W + + ++ GDEV V ++ +D E+ RI+L +KQ + +P
Sbjct: 301 ---EGLVHVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLGMKQCQSNP 353
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ DG+ G++ +++S D ++D R +LN G+EV K + +D++ I+LSIK
Sbjct: 468 IELADGI---DGILRAADISQDRVEDARTVLNVGEEVEAKFMGVDKKTRAISLSIK 520
>gi|350564015|ref|ZP_08932834.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
gi|349778015|gb|EGZ32374.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
Length = 552
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 27/196 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + W A E G I G GGL V + GFLP +
Sbjct: 86 REKAKRAKTWDRLEAAVEKNETVLGLITGKVKGGLTVDVEGVRGFLPGSLVDT------- 138
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVGR 195
+ I + L G + +K+++ + + +V S + + + S+ N+E+ V +
Sbjct: 139 -RPIRDFGF-LEGKEVELKLVKIDRKRNNVVVSRRAVIEQESSAEREALLANMEEGSVLK 196
Query: 196 -------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAFI L DGL H+T +++W + +I+ GDE+ VKV+K D+
Sbjct: 197 GIVKNLTDYGAFIDLGGVDGLLHIT------DMAWRRVNHPSEIVQVGDEIEVKVLKFDK 250
Query: 249 EKSRITLSIKQLEEDP 264
E++R++L +KQ+EEDP
Sbjct: 251 ERNRVSLGLKQMEEDP 266
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + ++ ++ P K +H G + VK++ +++ +++ S K W
Sbjct: 302 GLVHTSELDWTNRNIHPSKVVH------LGQEVRVKILDVDQDRRRISLSIKQCTVNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDIL 233
+++ N D G D+G FI L DG + GLVH++++SW + + IRD
Sbjct: 356 GFAATHNKGDKISGNIKSITDFGIFIGL---DG--GIDGLVHLTDISWAQNGEEAIRD-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L +KQLE+DP
Sbjct: 410 KKGDELETIILSIDPERERISLGLKQLEQDPF 441
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSA+ +A A E G + +G ++ G + + G L M+ P +
Sbjct: 175 EQESSAEREALLANMEEGSVLKGIVKNLTDYGAFIDLGGVDGLLHITDMAWRR-VNHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFS----EKDAVWNKYSSRVNVEDIFVGR--- 195
+ G I VKV++ ++E ++ E+D W +R + G+
Sbjct: 234 IVQ------VGDEIEVKVLKFDKERNRVSLGLKQMEEDP-WADMVARYPIGSETGGKVAN 286
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYGAFI + DG+ GLVH SE+ W ++I +++ G EVRVK++ +D+++
Sbjct: 287 ITDYGAFIEI--EDGI---EGLVHTSELDW-TNRNIHPSKVVHLGQEVRVKILDVDQDRR 340
Query: 252 RITLSIKQLEEDP 264
RI+LSIKQ +P
Sbjct: 341 RISLSIKQCTVNP 353
>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
Length = 403
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++G FI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVIEGKVSRLTNFGGFIDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|400406032|ref|YP_006588780.1| ribosomal protein S1 [secondary endosymbiont of Heteropsylla
cubana]
gi|400364285|gb|AFP85352.1| ribosomal protein S1 [secondary endosymbiont of Heteropsylla
cubana]
Length = 559
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AY++S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLILEKAYEKSDTVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFV 193
+ + H L G + KVI+ +++ +V S + + ++ S+ N E + V
Sbjct: 141 VRDTFH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERNQLLENLQESMEV 195
Query: 194 G------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+ GDE+ VK++K D
Sbjct: 196 KGLVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVTVGDEITVKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLL 266
RE++R++L +KQL EDP +
Sbjct: 250 RERTRVSLGLKQLGEDPWI 268
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E+ + G++ G V V G + +M ++ P K ++
Sbjct: 267 WIAIAKRYPENTCL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
G I++V V++ +EE +++ K W +++ + + G+ D+G
Sbjct: 324 ----VGDIVNVMVLEIDEERRRISLGLKQCKPNPWQQFAETYHKGERVEGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L + GLVH+S++SW + ++ +GDE+ V+++D E+ RI+L IK
Sbjct: 380 FIGLN-----GGIDGLVHLSDISWQVAGEEAVRAYKKGDEIAAVVLQVDAERERISLGIK 434
Query: 259 QLEEDPL 265
QL EDP
Sbjct: 435 QLAEDPF 441
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + + G I+VK+++ +
Sbjct: 197 GLVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIV------TVGDEITVKILKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
E ++ K + W + R GR DYG F+ + + GLV
Sbjct: 250 RERTRVSLGLKQLGEDPWIAIAKRYPENTCLSGRVTNLTDYGCFVEIE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
HVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ + +P
Sbjct: 305 HVSEMDW-TNKNIHPSKVVNVGDIVNVMVLEIDEERRRISLGLKQCKPNP 353
>gi|28199337|ref|NP_779651.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
gi|71276211|ref|ZP_00652490.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
gi|170730703|ref|YP_001776136.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
gi|182682062|ref|YP_001830222.1| 30S ribosomal protein S1 [Xylella fastidiosa M23]
gi|386083383|ref|YP_005999665.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417557988|ref|ZP_12208986.1| Ribosomal protein S1 RpsA [Xylella fastidiosa EB92.1]
gi|28057443|gb|AAO29300.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
gi|71162972|gb|EAO12695.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
gi|71729776|gb|EAO31876.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
gi|71731515|gb|EAO33577.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
gi|167965496|gb|ACA12506.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
gi|182632172|gb|ACB92948.1| ribosomal protein S1 [Xylella fastidiosa M23]
gi|307578330|gb|ADN62299.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179385|gb|EGO82333.1| Ribosomal protein S1 RpsA [Xylella fastidiosa EB92.1]
Length = 558
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDAIENGFGETILSREKAKRSMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TISGRINGKVKGGFTVDIKDVRAFLP-ASLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+ + + +V S + V +++S ++ + G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLLDKLQEGAVLTGTVKNMTDYGAFVDLGGVDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDEV V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + V G + +M ++ P K + G + V ++
Sbjct: 283 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQ------VGDEVEVMILDV 336
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W ++ D G+ D+G FI L DG + GL
Sbjct: 337 DEERRRISLGMKQVAANPWETFALTHKKGDKVSGQVKSITDFGIFIGL---DG--GIDGL 391
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+H+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+DP
Sbjct: 392 LHLSDISWNTTGEDIVRNFKKGDTLETVVLAVDPERERISLGVKQLEQDPF 442
>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
Length = 299
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 20/182 (10%)
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ EG +Q G V + G + Q+S H ++P + E G + VKV+
Sbjct: 111 VLEGTVQRITDFGAFVDIGGVDGLVHISQLSHEH-VEKPTDVVAE------GQAVKVKVL 163
Query: 162 QANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLT 213
+ + +++ S K+ + W++ ++R + + G YGAFI L FP +
Sbjct: 164 SVDRDNERISLSIKETLPGPWSEIANRASKGSVLEGEVKRIVSYGAFIEL-FPG----VE 218
Query: 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 273
GLVH+S++S + ++L EG V+VKV+ ++ + R++LSIK+LEE P+ E + +
Sbjct: 219 GLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKELEEKPVQEVEKYEL 278
Query: 274 PQ 275
P+
Sbjct: 279 PE 280
>gi|357235302|ref|ZP_09122645.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
gi|356883284|gb|EHI73484.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
Length = 398
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 54 KFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSA-DWKAARAYKE------SGFIYEGK 106
+F N + + + + A NR SR + K A A +E G + +GK
Sbjct: 141 RFVRNTEQFVGQDIEAKIKEVDPAENRFILSRREVVEEKNAAARQEIFSKLEVGSVVKGK 200
Query: 107 IQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166
+ G V + G + ++S H KS+ + G I VKV+ +EE
Sbjct: 201 VARLTSFGAFVDLGGVDGLVHVTELS--HERNVSPKSVVSV-----GDEIDVKVLAIDEE 253
Query: 167 MKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHV 218
++ S K W+ ++ D+ G+ D+GAF+ + L + GLVH+
Sbjct: 254 AGRISLSLKATTPGPWDGVEQKLAAGDVIDGKVKRLTDFGAFVEV-----LPGIDGLVHI 308
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
S++S +++ +D+L+ G EV+VKV+ +D + R++LSIK L+E P
Sbjct: 309 SQISHKRVENPKDVLSVGQEVQVKVLSVDADAERVSLSIKALQERP 354
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V F L GF+P + Q G I K+ + + + +
Sbjct: 120 GGLSVEFEGLRGFIPASMLDTRFVRNTEQ---------FVGQDIEAKIKEVDPAENRFIL 170
Query: 173 SEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S ++ V K + S++ V + G+ +GAF+ L DGL H+T L H
Sbjct: 171 SRREVVEEKNAAARQEIFSKLEVGSVVKGKVARLTSFGAFVDLGGVDGLVHVTELSHERN 230
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
VS + +++ GDE+ VKV+ ID E RI+LS+K P
Sbjct: 231 VSP------KSVVSVGDEIDVKVLAIDEEAGRISLSLKATTPGP 268
>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 299
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W ++SG + ++ G N GG+ + + L GF+P ++ + +
Sbjct: 111 WDQLAQVQDSGKSLQVQVTGVNKGGVTIDWQGLRGFIPRSHLNQRGNLE----------- 159
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G ++V +++A+ + KLVFS+++A S + V + G R +G F+ L
Sbjct: 160 SLIGQSLTVSILEADRDRSKLVFSQREATRAASFSMLEVGQLVEGTVSNIRPFGVFVELE 219
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+TGL+H+ +VS ++++ + D+ G ++ VI +D +R++LS K LE P
Sbjct: 220 ------GITGLLHIKQVSQNMVESLTDMFEVGQSIKAIVIDLDEGTNRVSLSTKVLENYP 273
>gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|389868291|ref|YP_006375714.1| 30S ribosomal protein S1 [Enterococcus faecium DO]
gi|424796676|ref|ZP_18222374.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|424825698|ref|ZP_18250661.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|424857065|ref|ZP_18281257.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|424868168|ref|ZP_18291929.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|424954676|ref|ZP_18369564.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|424960233|ref|ZP_18374771.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|424963101|ref|ZP_18377366.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|424967146|ref|ZP_18380878.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|424969833|ref|ZP_18383381.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|424976261|ref|ZP_18389364.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|424994815|ref|ZP_18406737.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|425003664|ref|ZP_18415017.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|425009173|ref|ZP_18420205.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|425017169|ref|ZP_18427692.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|425036861|ref|ZP_18441576.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|425038780|ref|ZP_18443370.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|425043827|ref|ZP_18448029.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|425045673|ref|ZP_18449760.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|425049502|ref|ZP_18453349.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|425051418|ref|ZP_18455084.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|425059359|ref|ZP_18462705.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|425062179|ref|ZP_18465350.1| putative ribosomal protein S1 [Enterococcus faecium 503]
gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|388533540|gb|AFK58732.1| ribosomal protein S1 [Enterococcus faecium DO]
gi|402922682|gb|EJX43037.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|402925214|gb|EJX45375.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|402929490|gb|EJX49244.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|402936172|gb|EJX55369.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|402937338|gb|EJX56456.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|402948595|gb|EJX66719.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|402950215|gb|EJX68224.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|402954987|gb|EJX72561.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|402963166|gb|EJX80052.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|402970064|gb|EJX86430.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|402979027|gb|EJX94721.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|402990398|gb|EJY05271.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|402991450|gb|EJY06237.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|403004933|gb|EJY18689.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|403013161|gb|EJY26288.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|403017870|gb|EJY30593.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|403018641|gb|EJY31309.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|403026596|gb|EJY38559.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|403027362|gb|EJY39255.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|403035464|gb|EJY46852.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|403037686|gb|EJY48950.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|403039296|gb|EJY50459.1| putative ribosomal protein S1 [Enterococcus faecium 503]
Length = 417
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 212 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDDVNVK 264
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 265 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 319
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 377
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 378 --PKNVESY 384
>gi|387885873|ref|YP_006316172.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386870689|gb|AFJ42696.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 556
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLQGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + G GKI+ G+ F L G + + P K+I E+ K
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGV---FIGLEGGIDGLVHISDVAWDNPAKAIKELKK 410
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DIFVGRDYGAFI 201
G + ++ N +++++ S K + + + +N+ ++ +D GA +
Sbjct: 411 G---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVKGNVTKLQDNGAVV 467
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K I LSIK ++
Sbjct: 468 ML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSIALSIKAVD 524
Query: 262 ED 263
ED
Sbjct: 525 ED 526
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH SE+ W + + ++ G EV V V++++ + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELEADNHRISLGIKQCRAN 352
Query: 264 P 264
P
Sbjct: 353 P 353
>gi|373852974|ref|ZP_09595774.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
gi|391229292|ref|ZP_10265498.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
gi|372475203|gb|EHP35213.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
gi|391218953|gb|EIP97373.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
Length = 552
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +W+ G + G+++ GGL++ +G F M SH +P K
Sbjct: 80 KAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLIIS----IGVDAF--MPASHIDIQPPK 133
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----- 195
++ + G KV++ N+E K +V S ++ + + S + +E I G+
Sbjct: 134 NLDQ----YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIEPGQVRKGV 189
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
D+GAFI L DG+ GL+H++++SW I ++L +G+E++V +I+++REK
Sbjct: 190 VKNITDFGAFIDL---DGM---DGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNREK 243
Query: 251 SRITLSIKQLEEDPLLETLEKVIPQG 276
R++L +KQ ++P E +E+ P G
Sbjct: 244 ERVSLGLKQTTKNPWDE-IEQKFPVG 268
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W R G GK++ G + + G + MS + P + + +
Sbjct: 345 WDMVRHNYPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKK-- 402
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V+ + +++ K W+ S + D+ G +GAF
Sbjct: 403 ----GDEVDAIVLDVDASQQRISLGMKQLAIDPWSDIDSFFKIGDVVKGTVTKITSFGAF 458
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L+ DG+ GLVH+S++S + I ++D+L G EV +VIKIDR++ R+ LSIK
Sbjct: 459 VDLK--DGI---DGLVHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAA 513
Query: 261 EEDP 264
P
Sbjct: 514 NYSP 517
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGL 151
E G + +G ++ G + + G L MS PS K+
Sbjct: 181 EPGQVRKGVVKNITDFGAFIDLDGMDGLLHITDMSWGRIAHPSEMLKQ------------ 228
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G I V +I+ N E +++ K W++ + V G+ YGAFI +
Sbjct: 229 -GEEIQVMIIEVNREKERVSLGLKQTTKNPWDEIEQKFPVGAKIHGKVVNLVPYGAFIEI 287
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVH++E+SW I ++L G E+ V+ I ++ +I+L ++QLE
Sbjct: 288 E-----PGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEP 342
Query: 263 DP 264
+P
Sbjct: 343 NP 344
>gi|372271285|ref|ZP_09507333.1| 30S ribosomal protein S1 [Marinobacterium stanieri S30]
Length = 560
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R+ A W+ +A ++ +G I G GG V ++ GFLP S
Sbjct: 86 REKAKRAEA-WEVLQAKFDAEETVKGYISGKVKGGFTVSINNIQGFLP-----GSLVDVR 139
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVED--IF 192
P + + L G + K+I+ + + +V S + + S++ +E+ I
Sbjct: 140 PVRDVDH----LEGKELEFKLIKLDPKRNNIVVSRRAVLQEANSAQREELLATLEEGQIV 195
Query: 193 VG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
G +YGAFI L DGL H+T +++W I ++LN GDE+ VK+IK D
Sbjct: 196 KGYVKNLTNYGAFIDLGGVDGLLHIT------DMAWKRISHPSEMLNPGDEISVKIIKFD 249
Query: 248 REKSRITLSIKQLEEDP 264
+E +RI+L +KQL EDP
Sbjct: 250 KETNRISLGLKQLSEDP 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +MS ++ P K ++ G + V ++ +EE +++ K W
Sbjct: 302 GLVHVSEMSWTNKNIHPSKIVN------IGDEVEVMILDVDEERRRISLGIKQCTANPWV 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 235
+S + D G D+G F+ L L GLVH+S++SW+ D L +
Sbjct: 356 SFSEQNAANDKVSGTIKTITDFGIFVGLD-----NDLDGLVHMSDISWE--ADPETALRQ 408
Query: 236 ---GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GDEV ++ ID EK RI+L IKQLE DP E L
Sbjct: 409 FKKGDEVEAVILSIDAEKERISLGIKQLESDPFAEYL 445
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
Q +SA + A E G I +G ++ G + + G L M+ P +
Sbjct: 175 QEANSAQREELLATLEEGQIVKGYVKNLTNYGAFIDLGGVDGLLHITDMAWKR-ISHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G ISVK+I+ ++E ++ K + W+ R R
Sbjct: 234 MLN------PGDEISVKIIKFDKETNRISLGLKQLSEDPWDDIKDRYPAGTKVAARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F + DG+ GLVHVSE+SW ++I I+N GDEV V ++ +D E+ R
Sbjct: 288 TDYGCFASIE--DGV---EGLVHVSEMSW-TNKNIHPSKIVNIGDEVEVMILDVDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ +P
Sbjct: 342 ISLGIKQCTANP 353
>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
Length = 403
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGKAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P ++ G + VK
Sbjct: 198 GDVIEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDALK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATANLNEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|260913659|ref|ZP_05920135.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
gi|260632198|gb|EEX50373.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
Length = 549
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 28/204 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R R+ A +AY+E + G I G GG V + FLP + +
Sbjct: 85 SRVDAKRNEAWIALEKAYEEQATVI-GLINGKVKGGFTVELNGVRAFLPGSLVD----TR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG-- 194
++++H L G + KVI+ +++ +V S + + ++ S +E++ G
Sbjct: 140 PVRETLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQILENLQEGSE 194
Query: 195 --------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLE 270
D++++R++L +KQL +DP + E
Sbjct: 249 DKDRTRVSLGLKQLGQDPWVAIAE 272
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDVVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW+ + +R+ +GDEV V+++D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWNASGEEAVRN-YKKGDEVAAVVLQVDAVKERISLGIKQLEEDPF 441
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 23/183 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ +++ ++ K W + VE G+ DYG F+ + L
Sbjct: 243 VKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVESKLTGKVTNLTDYGCFVEI-----L 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ + +P L+
Sbjct: 298 DGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQ 356
Query: 268 TLE 270
E
Sbjct: 357 FAE 359
>gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O12]
Length = 408
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + +++ G + + + GFN GG+ L GF+P Q+ + +E
Sbjct: 213 WDKVKEFEKEGKVVQVVVNGFNRGGVTCDLEGLRGFIPRSQLEDGENHQE---------- 262
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V I+ N E +KLV S+K A + V + G + YG FI L
Sbjct: 263 -LVGKTLGVAFIEVNSETRKLVLSQKRAAVAARFQELEVGQLVEGVVAAVKPYGLFIDL- 320
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ IR++ ++G+ V+ + ++D + RI L+ LE P
Sbjct: 321 -----GGISGLLHQSAITNGSLRSIREVFDQGERVQALITELDPGRGRIGLNTALLEGPP 375
Query: 265 --LLETLEKVIPQ 275
LL +KV+ +
Sbjct: 376 GELLVEKDKVMAE 388
>gi|54297331|ref|YP_123700.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
gi|161723255|ref|YP_095450.2| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|397663853|ref|YP_006505391.1| 30S ribosomal protein S1 [Legionella pneumophila subsp.
pneumophila]
gi|397667039|ref|YP_006508576.1| 30S ribosomal protein S1 [Legionella pneumophila subsp.
pneumophila]
gi|53751116|emb|CAH12527.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
gi|395127264|emb|CCD05454.1| 30S ribosomal subunit protein S1 [Legionella pneumophila subsp.
pneumophila]
gi|395130450|emb|CCD08690.1| 30S ribosomal subunit protein S1 [Legionella pneumophila subsp.
pneumophila]
Length = 558
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 43/228 (18%)
Query: 66 TVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
TV LD D + SR A W+ E+ G I G GG V S
Sbjct: 67 TVEVALDSVEDGHGETLLSREKAKRQEAWRKLSKCHENNETVTGLISGKVKGGFTVEIGS 126
Query: 122 LVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
+ FLP P PS+ L G + KVI+ + + +V S +
Sbjct: 127 IRAFLPGSLVDVRPVRDPSY---------------LEGKELEFKVIKMDLKRNNIVVSRR 171
Query: 176 DAVWNKYSS--RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
V + S+ + +E + G+ DYGAFI L DGL H+T ++SW
Sbjct: 172 AVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHIT------DISW 225
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++ ++L+ G +V+VKV+ D E++R++L +KQL DP ++ +E+
Sbjct: 226 KRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVER 273
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 281 QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVS------LGDVVDVMVLE 334
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+EE +++ K V W +++S N + G+ D+G FI L DG + G
Sbjct: 335 IDEERRRISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGL---DG--DIDG 389
Query: 215 LVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
LVH+S++SW + ++ +G E+ ++ ID E+ RI+L +KQLE D
Sbjct: 390 LVHLSDISWTVPGEEAVKQFKKGQELEAVILAIDPERERISLGLKQLEGDSF 441
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSAD +A G G ++ G + + G L +S K P +
Sbjct: 175 EEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHITDISWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G + VKV+ + E ++ K + W R + G+
Sbjct: 234 VLS------VGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVH+SE+ W +++ +++ GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHMSEMDW-TNKNVHPSKVVSLGDVVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGMKQCVGNP 353
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++G + VSE+S + + D I+ GDEV K+ IDR+ I+LS+K
Sbjct: 474 VSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVK 520
>gi|392543539|ref|ZP_10290676.1| 30S ribosomal protein S1 [Pseudoalteromonas piscicida JCM 20779]
Length = 555
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 27/172 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I G GG V S+ FLP + + + + H L G + KVI+ +
Sbjct: 110 GMINGKVKGGFTVEVDSIRAFLPGSLVD----VRPVRDTAH-----LEGKELEFKVIKLD 160
Query: 165 EEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYHL 212
++ +V S + + ++ S ++++ G+ DYGAF+ L DGL H+
Sbjct: 161 QKRNNVVVSRRAVIESENSQEREELLQNLVEGQEVKGIVKNLTDYGAFVDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
T +++W ++ +I+N GDE+ VKV+K D+EK+R++L +KQL EDP
Sbjct: 221 T------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKTRVSLGLKQLGEDP 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WAAIAGRYPEGAKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVS--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K W +++ N D G+ D+G F
Sbjct: 324 ---LGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLNNKGDQVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +K
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERERISLGVK 434
Query: 259 QLEEDPLLETLE 270
Q++ DP L+
Sbjct: 435 QIDADPFTNYLD 446
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I+VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEINVKVLKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
+E ++ K + W + R GR DYG F+ + + GLV
Sbjct: 250 KEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ + +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQE 356
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLET 268
+ G + V++++ + ++D ++EGDE+ K + +DR+ I+LS+K + EE +LE
Sbjct: 474 VEGYIRVADIAQERVEDATAAVSEGDEIEAKFVGVDRKNRTISLSVKAIYEAEEKEVLEK 533
Query: 269 LEKVIPQGLEPYLKSFYK 286
L+K P E + + +K
Sbjct: 534 LKKDEP-AFENAMAAAFK 550
>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
Length = 402
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGL+V + GFLP +S + K G +
Sbjct: 110 EDGNAVEGTVTSSVRGGLIVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVVEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N DIF G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIK 352
>gi|407700220|ref|YP_006825007.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
11']
gi|407249367|gb|AFT78552.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
11']
Length = 556
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY++ I +G I G GG V S+ FLP + +
Sbjct: 86 REKAKRHEAWVELEKAYEDKATI-KGVINGKVKGGFTVEVNSVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVED---- 190
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLLANLEEGHEI 195
Query: 191 ---IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EK R++L +KQ+ DP E + P+G
Sbjct: 250 KEKQRVSLGMKQMGNDPWQEIASR-YPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G G++ G V V G + +M ++ P K ++
Sbjct: 267 WQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVN--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K + W ++ D G+ D+G F
Sbjct: 324 ---LGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
I L DG + GLVH+S++SW D ++D + +GDE+ V+++D E+ RI+L
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVDPERERISL 431
Query: 256 SIKQLEEDPL 265
+KQ+EEDP
Sbjct: 432 GVKQIEEDPF 441
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERETLLANLEEGHEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ ++E +++ K + W + +SR G+
Sbjct: 234 IVN------VGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGLKQCIANP 353
>gi|300692113|ref|YP_003753108.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
gi|299079173|emb|CBJ51841.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNHKKGDKLSGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|421746148|ref|ZP_16183962.1| 30S ribosomal protein S1 [Cupriavidus necator HPC(L)]
gi|409775324|gb|EKN56827.1| 30S ribosomal protein S1 [Cupriavidus necator HPC(L)]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ A ++ + + D + +++ A W E G I G +
Sbjct: 59 LNDQGELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLTGQIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWQESGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG++V ++ IDR+ I +SIK + E L+K
Sbjct: 479 VEGYLRASEISADRVEDARNVLKEGEQVTAVIVNIDRKSRNINVSIKAKDSAEQQEALQK 538
>gi|406913700|gb|EKD53045.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 360
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 25/170 (14%)
Query: 111 NGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
N GG++V+ + GF+P Q + L V+VI+ +++ +L
Sbjct: 117 NKGGMVVKIGDIRGFVPTSQFGERFLGN---------MESLLNKNFKVRVIEVDKDQNRL 167
Query: 171 VFSEK-----DAVWNKYSSR--VNVEDIFVGR-----DYGAFIHLRFP----DGLYHLTG 214
+FSEK +A+ K + VNV D F G +G F+ + P + + + G
Sbjct: 168 IFSEKLVSDSEALAKKGEALELVNVGDKFEGTVSGIMPFGVFVTVNVPMKGTEEVAKVEG 227
Query: 215 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
L+H+SE+SW+ ++D + G EV V+VI ID+ ++ LSIKQ+ DP
Sbjct: 228 LIHISEISWEKVEDPNVMFKVGQEVHVQVIGIDKAVGKLNLSIKQMTGDP 277
>gi|406580147|ref|ZP_11055365.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|406582367|ref|ZP_11057492.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|406584611|ref|ZP_11059636.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|406589505|ref|ZP_11063940.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410937808|ref|ZP_11369667.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
gi|404454526|gb|EKA01454.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|404458219|gb|EKA04666.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|404463841|gb|EKA09420.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|404470775|gb|EKA15370.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410733941|gb|EKQ75863.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
Length = 409
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDDVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|334143908|ref|YP_004537064.1| 30S ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
gi|333964819|gb|AEG31585.1| ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
Length = 552
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 27/196 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + W A E G + G GGL V + GFLP +
Sbjct: 86 REKAKRAKTWDRLEAAVEKNETVVGLVTGKVKGGLTVDVEGVRGFLPGSLVDT------- 138
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVGR 195
+ I + L G + +K+++ + + +V S + + + S+ N+E+ V +
Sbjct: 139 -RPIRDFGF-LEGKEVEMKLVKIDRKRNNVVVSRRAVIEQESSAEREALLANMEEGSVLK 196
Query: 196 -------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAFI L DGL H+T +++W + +I+ GDE+ VKV+K D+
Sbjct: 197 GIVKNLTDYGAFIDLGGVDGLLHIT------DMAWRRVNHPSEIVQVGDEIEVKVLKFDK 250
Query: 249 EKSRITLSIKQLEEDP 264
E++R++L +KQ+EEDP
Sbjct: 251 ERNRVSLGLKQMEEDP 266
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSA+ +A A E G + +G ++ G + + G L M+ P +
Sbjct: 175 EQESSAEREALLANMEEGSVLKGIVKNLTDYGAFIDLGGVDGLLHITDMAWRR-VNHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFS----EKDAVWNKYSSRVNVEDIFVGR--- 195
+ G I VKV++ ++E ++ E+D W+ +R + G+
Sbjct: 234 IVQ------VGDEIEVKVLKFDKERNRVSLGLKQMEEDP-WSDMVARYPIGSETGGKVAN 286
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYGAFI + DG+ GLVH SE+ W ++I +++ G EVRVK++ +D+++
Sbjct: 287 ITDYGAFIEI--EDGI---EGLVHTSELDW-TNRNIHPSKVVHLGQEVRVKILDVDQDRR 340
Query: 252 RITLSIKQLEEDP 264
RI+LSIKQ +P
Sbjct: 341 RISLSIKQCTVNP 353
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + ++ ++ P K +H G + VK++ +++ +++ S K W
Sbjct: 302 GLVHTSELDWTNRNIHPSKVVH------LGQEVRVKILDVDQDRRRISLSIKQCTVNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDIL 233
+++ N D G D+G FI L DG + GLVH++++SW + + IRD
Sbjct: 356 GFAATHNKGDKISGNIKSITDFGIFIGL---DG--GIDGLVHLTDISWAQNGEEAIRD-F 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L +KQLE+DP
Sbjct: 410 KKGDELETIILSIDPERERISLGLKQLEQDPF 441
>gi|194288913|ref|YP_002004820.1| 30S ribosomal protein s1 [Cupriavidus taiwanensis LMG 19424]
gi|193222748|emb|CAQ68751.1| 30S ribosomal subunit protein S1 [Cupriavidus taiwanensis LMG
19424]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ A ++ + + D + +++ A W E G I G +
Sbjct: 59 LNDQGELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLSGQIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWQESGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+++ V+ +DR+ I LSIK + E ++K
Sbjct: 479 VEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKSRNINLSIKAKDSAEQQEAMQK 538
>gi|344174042|emb|CCA85823.1| 30S ribosomal subunit protein S1 [Ralstonia syzygii R24]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNHKKGDKLSGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW D ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQDTGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|161611256|ref|YP_296774.2| 30S ribosomal protein S1 [Ralstonia eutropha JMP134]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ A ++ + + D + +++ A W E G I G +
Sbjct: 59 LNDQGELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLSGQIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+++ V+ +DR+ I LSIK + E ++K
Sbjct: 479 VEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKSRNINLSIKAKDNVEQQEAMQK 538
>gi|94309667|ref|YP_582877.1| 30S ribosomal protein S1 [Cupriavidus metallidurans CH34]
gi|430806116|ref|ZP_19433231.1| 30S ribosomal protein S1 [Cupriavidus sp. HMR-1]
gi|93353519|gb|ABF07608.1| 30S ribosomal subunit protein S1 [Cupriavidus metallidurans CH34]
gi|429501649|gb|EKZ99979.1| 30S ribosomal protein S1 [Cupriavidus sp. HMR-1]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ A ++ + + D + +++ A W E G I G +
Sbjct: 59 LNDQGELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLTGQIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWQESGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+++ V+ +DR+ I LSIK + E ++K
Sbjct: 479 VEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKSRNINLSIKAKDSAEQQEAMQK 538
>gi|297621095|ref|YP_003709232.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
gi|297376396|gb|ADI38226.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
gi|337292320|emb|CCB90357.1| 30S ribosomal protein S1 [Waddlia chondrophila 2032/99]
Length = 568
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 32/242 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYE 104
L P+ +FS + I + LD++ D+N + SR A+ W+ + E G I +
Sbjct: 75 LVPMEEFSDPSQIILGNEIEVFLDEAEDSNGQIILSREKAEKLRKWEFILEHCEEGSIVK 134
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GK+ GGL+V + FLP Q+ K I + + + G K+++ N
Sbjct: 135 GKVIRKVKGGLMVDI-GMEAFLPGSQLD--------NKRIKNLDEYI-GQTYEFKILKIN 184
Query: 165 EEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVG-----RDYGAFIHLRFPDGLYHL 212
+ K +V S ++ + + S+ ++ DI G D+G F+ L DG+
Sbjct: 185 IDRKNVVVSRRELLEAERISKKAELLATISEGDIREGIVKNITDFGVFLDL---DGI--- 238
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
GL+H+++++W I+ +++ GD++ V ++ +DR+K R+ L +KQ E +P E +K
Sbjct: 239 DGLLHITDMTWKRIRHPSEMVKIGDKLEVMILSVDRDKGRVALGLKQKESNPWDEIEQKY 298
Query: 273 IP 274
P
Sbjct: 299 PP 300
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I EG ++ G+ + + G L M+ + P + + G + V
Sbjct: 216 GDIREGIVKNITDFGVFLDLDGIDGLLHITDMTWKR-IRHPSEMVK------IGDKLEVM 268
Query: 160 VIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-DYGAFIHLRFPDGLYH 211
++ + + ++ K D + KY V+ V YGAFI + DG+
Sbjct: 269 ILSVDRDKGRVALGLKQKESNPWDEIEQKYPPGTRVKGKIVNLLSYGAFIEIE--DGI-- 324
Query: 212 LTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
GL+HVSE+SW + D +++N+GDEV V+ + R++ +I+L IKQ E +P E E
Sbjct: 325 -EGLIHVSEMSWVKNVTDPSEVVNKGDEVEAIVLSVQRDEGKISLGIKQTERNPWDEVEE 383
Query: 271 K 271
K
Sbjct: 384 K 384
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 176 DAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDIL 233
D V KY NV+ ++ +YGAF+ L + GL+H+S++SW + +IL
Sbjct: 379 DEVEEKYPVDKNVKVEVKSLTNYGAFVELE-----PGVEGLIHISDLSWIKKVSHPSEIL 433
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
+GD V ++ +D+E +ITL +KQL +P E +++ +P
Sbjct: 434 KKGDMVDAVILSVDKESKKITLGVKQLGSNP-WEDIKETMP 473
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G ++ ++ ++E KK+ K W + ++ I G YGAF+ L
Sbjct: 436 GDMVDAVILSVDKESKKITLGVKQLGSNPWEDIKETMPIDSIVKGTVSKITAYGAFVELD 495
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L GL+HV+E+S + + D+++ G +V KV+K+D E +I+LSIK+
Sbjct: 496 -----NGLEGLIHVTELSDEAFGKVEDVVSVGADVTAKVMKVDPEHKKISLSIKE 545
>gi|261207579|ref|ZP_05922264.1| ribosomal protein S1 [Enterococcus faecium TC 6]
gi|289565091|ref|ZP_06445544.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
gi|260077962|gb|EEW65668.1| ribosomal protein S1 [Enterococcus faecium TC 6]
gi|289163098|gb|EFD10945.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
Length = 409
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDDVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|406596972|ref|YP_006748102.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
gi|407683979|ref|YP_006799153.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407687884|ref|YP_006803057.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406374293|gb|AFS37548.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
gi|407245590|gb|AFT74776.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407291264|gb|AFT95576.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 556
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY++ I +G I G GG V S+ FLP + +
Sbjct: 86 REKAKRHEAWVELEKAYEDKATI-KGVINGKVKGGFTVEVNSVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVED---- 190
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLLANLEEGHEI 195
Query: 191 ---IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EK R++L +KQ+ DP E + P+G
Sbjct: 250 KEKQRVSLGMKQMGNDPWQEIASR-YPEG 277
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G G++ G V V G + +M ++ P K ++
Sbjct: 267 WQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVN--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K + W ++ D G+ D+G F
Sbjct: 324 ---LGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
I L DG + GLVH+S++SW D ++D + +GDE+ V+++D E+ RI+L
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVDPERERISL 431
Query: 256 SIKQLEEDPL 265
+KQ+EEDP
Sbjct: 432 GVKQIEEDPF 441
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERETLLANLEEGHEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ ++E +++ K + W + +SR G+
Sbjct: 234 IVN------VGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGLKQCIANP 353
>gi|54294307|ref|YP_126722.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
gi|53754139|emb|CAH15612.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
Length = 558
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 43/228 (18%)
Query: 66 TVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
TV LD D + SR A W+ E+ G I G GG V S
Sbjct: 67 TVEVALDSVEDGHGETLLSREKAKRQEAWRKLSKCHENNETVTGLISGKVKGGFTVEIGS 126
Query: 122 LVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
+ FLP P PS+ L G + KVI+ + + +V S +
Sbjct: 127 IRAFLPGSLVDVRPVRDPSY---------------LEGKELEFKVIKMDLKRNNIVVSRR 171
Query: 176 DAVWNKYSS--RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
V + S+ + +E + G+ DYGAFI L DGL H+T ++SW
Sbjct: 172 AVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHIT------DISW 225
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++ ++L+ G +V+VKV+ D E++R++L +KQL DP ++ +E+
Sbjct: 226 KRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVER 273
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 281 QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVS------LGDVVDVMVLE 334
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+EE +++ K V W +++S N + G+ D+G FI L DG + G
Sbjct: 335 IDEERRRISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGL---DG--DIDG 389
Query: 215 LVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
LVH+S++SW + ++ +G E+ ++ ID E+ RI+L +KQLE D
Sbjct: 390 LVHLSDISWTVPGEEAVKQFKKGQELEAVILAIDPERERISLGLKQLEGDSF 441
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSAD +A G G ++ G + + G L +S K P +
Sbjct: 175 EEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHITDISWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G + VKV+ + E ++ K + W R + G+
Sbjct: 234 VLS------VGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVH+SE+ W +++ +++ GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHMSEMDW-TNKNVHPSKVVSLGDVVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGMKQCVGNP 353
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++G + VSE+S + + D I+ GDEV K+ IDR+ I+LS+K
Sbjct: 474 VSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVK 520
>gi|430833535|ref|ZP_19451547.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430838908|ref|ZP_19456851.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430858583|ref|ZP_19476210.1| ribosomal protein S1 [Enterococcus faecium E1552]
gi|430486276|gb|ELA63135.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430491309|gb|ELA67782.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430545210|gb|ELA85196.1| ribosomal protein S1 [Enterococcus faecium E1552]
Length = 409
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDDVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332688375|gb|AEE88267.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 285
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W +E+G + ++ G N GG+ V L GF+P +S H+
Sbjct: 95 WDGLVELQENGKSLDVRVSGVNKGGVTVDVRGLRGFIPRSHLSQ-----------HDNLD 143
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
L G ++V ++A+ + KKLV S+++AV S + V + G+ +G F+
Sbjct: 144 SLIGQKLTVNFLEADRDRKKLVLSQREAVRAATFSELEVGQLVEGKVAAIKPFGVFVDFN 203
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GL+H+ +VS ++D+ + G ++V +I +D K RI++S + LE P
Sbjct: 204 ------QTNGLLHIKQVSQSFVEDLSKVFEIGQVIQVMIINLDEGKGRISMSTRVLENYP 257
Query: 265 --LLETLEKVIP 274
+LE + +V+
Sbjct: 258 GEMLEKMAEVMA 269
>gi|148358952|ref|YP_001250159.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
gi|296107001|ref|YP_003618701.1| 30S ribosomal protein S1 [Legionella pneumophila 2300/99 Alcoy]
gi|148280725|gb|ABQ54813.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
gi|295648902|gb|ADG24749.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
Alcoy]
Length = 558
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 43/228 (18%)
Query: 66 TVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
TV LD D + SR A W+ E+ G I G GG V S
Sbjct: 67 TVEVALDSVEDGHGETLLSREKAKRQEAWRKLSKCHENNETVTGLISGKVKGGFTVEIGS 126
Query: 122 LVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
+ FLP P PS+ L G + KVI+ + + +V S +
Sbjct: 127 IRAFLPGSLVDVRPVRDPSY---------------LEGKELEFKVIKMDLKRNNIVVSRR 171
Query: 176 DAVWNKYSS--RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
V + S+ + +E + G+ DYGAFI L DGL H+T ++SW
Sbjct: 172 AVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHIT------DISW 225
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++ ++L+ G +V+VKV+ D E++R++L +KQL DP ++ +E+
Sbjct: 226 KRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVER 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 281 QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVS------LGDVVDVMVLE 334
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+EE +++ K V W +++S N + G+ D+G FI L DG + G
Sbjct: 335 IDEERRRISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGL---DG--DIDG 389
Query: 215 LVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
LVH+S++SW + ++ +G ++ ++ ID E+ RI+L +KQLE D
Sbjct: 390 LVHLSDISWTIPGEEAVKQFKKGQDLEAVILAIDPERERISLGLKQLEGDSF 441
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSAD +A G G ++ G + + G L +S K P +
Sbjct: 175 EEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHITDISWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G + VKV+ + E ++ K + W R + G+
Sbjct: 234 VLS------VGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVH+SE+ W +++ +++ GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHMSEMDW-TNKNVHPSKVVSLGDVVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGMKQCVGNP 353
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++G + VSE+S + + D I+ GDEV K+ IDR+ I+LS+K
Sbjct: 474 VSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVK 520
>gi|254515153|ref|ZP_05127214.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
gi|219677396|gb|EED33761.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
Length = 557
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + WK A + + +G I G GG V ++ FLP + +
Sbjct: 86 REKAKRAESWKDLEAAFAAEEVVKGVINGKVKGGFTVDVNTIRAFLPGSLVD----VRPV 141
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
+ + H L G + KVI+ +++ +V S E+DA+ +V+
Sbjct: 142 RDTAH-----LEGKELDFKVIKLDQKRNNVVVSRRAVMEAANSVERDALLAGLQEGQSVK 196
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
+ DYGAF+ L DGL H+T +++W I+ +I+ G E+ VKV+K DR
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQELDVKVLKFDR 250
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQG 276
E++R++L +KQL EDP +E + P+G
Sbjct: 251 ERNRVSLGLKQLGEDPWVEITGR-YPEG 277
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVQ------LGDEVEVMVLDIDEERRRISLGIKQCQQNPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S D G D+G FI L ++ GLVH+S++SW+ + +R+
Sbjct: 356 AFASGATKGDRISGVIKSITDFGIFIGLE-----GNIDGLVHLSDISWNETGEEAVRN-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L +KQLE+DP
Sbjct: 410 KKGDEIETVILSVDPERERISLGVKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEERRRI 342
Query: 254 TLSIKQLEEDP 264
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
>gi|330445635|ref|ZP_08309287.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489826|dbj|GAA03784.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 556
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +AY+E+ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWIQLEKAYEEAETVV-GIINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ + H L + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTAH-----LENKELEFKVIKLDQKRNNVVVSRRAVIESENSVERDELLASLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
DR+++R++L +KQL EDP
Sbjct: 249 DRDRTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y ES + G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPESTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLE-----GGIDGLVHLSDISWNVSGEEAVRD-FKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+EEDP
Sbjct: 434 KQIEEDPF 441
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +S + A + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSVERDELLASLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + + ++ K + W + R GR
Sbjct: 234 IVN------VGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
>gi|152979212|ref|YP_001344841.1| 30S ribosomal protein S1 [Actinobacillus succinogenes 130Z]
gi|150840935|gb|ABR74906.1| ribosomal protein S1 [Actinobacillus succinogenes 130Z]
Length = 550
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 31/220 (14%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGF-NG---GGLLVRFFSL 122
VN LD D SR A + E F + + G NG GG V +
Sbjct: 69 VNVALDAVEDGYGETKLSREKAVRHESWIELEKAFEAQANVVGLINGKVKGGFTVELSGV 128
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS--------- 173
FLP + P + A L G + KVI+ +++ +V S
Sbjct: 129 RAFLPGSLVDT-----RPTRD----ADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESEN 179
Query: 174 --EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
++D V + V V+ I +YGAF+ L DGL H+T +++W ++
Sbjct: 180 SADRDEVLANLAEGVEVKGIVKNLTEYGAFVDLGGVDGLLHIT------DMAWKRVKHPS 233
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+I+N GDE+ VKV+K D+E++R++L +KQL +DP + E
Sbjct: 234 EIVNVGDEITVKVLKFDKERTRVSLGLKQLGQDPWVAIAE 273
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 283 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDSVEVMVLEI 336
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 337 DEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKIKSITDFGIFIGLEGG-----IDGL 391
Query: 216 VHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW+ +Q + N +GDEV V+++D K RI+L IKQLE+DP
Sbjct: 392 VHLSDISWN-VQGEEAVRNYKKGDEVEAVVLQVDSTKERISLGIKQLEDDPF 442
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 23/198 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SAD A G +G ++ G V + G L M+ K P +
Sbjct: 176 ESENSADRDEVLANLAEGVEVKGIVKNLTEYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 234
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ ++E ++ K W + V G+
Sbjct: 235 IVN------VGDEITVKVLKFDKERTRVSLGLKQLGQDPWVAIAENYPVGSKLTGKVTNL 288
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ R
Sbjct: 289 TDYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRR 342
Query: 253 ITLSIKQLEEDPLLETLE 270
I+L +KQ + +P L+ E
Sbjct: 343 ISLGLKQCKPNPWLQFAE 360
>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
Length = 400
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISSRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAFI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ I D L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPF 273
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P ++ G + VK
Sbjct: 198 GDVVEGKVSRLTNFGAFIDVGGVDGLVHISEISYKHIDK-PSDALR------VGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI +++ ++ S K + + + +S +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDDDRHRISLSIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEV--TDGIQ- 307
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
GLVHVSE+S + D+L G V+VKV+ ID + RI+LSIK EE+ E+
Sbjct: 308 --GLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKATEENAASES 362
>gi|421899398|ref|ZP_16329763.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
gi|206590604|emb|CAQ37566.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVTVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLSGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|344170734|emb|CCA83161.1| 30S ribosomal subunit protein S1 [blood disease bacterium R229]
Length = 542
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ ++ + + D + +++ A W ESG I G + G
Sbjct: 41 GELEVQVGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALESGEIISGTVTGKVK 100
Query: 113 GGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA 163
GGL V R F SLV P +P + K + + ++ + ++S + V++A
Sbjct: 101 GGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEA 159
Query: 164 --NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSE 220
EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 160 TLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL----- 206
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPY 280
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG +
Sbjct: 207 -AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQGTRLF 264
Query: 281 LK 282
K
Sbjct: 265 GK 266
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 254 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 306
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 307 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNHKKGDKLSGQIKSITDFGVFIGL 366
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 367 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 421
Query: 263 DPL 265
DP
Sbjct: 422 DPF 424
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 457 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 516
>gi|422641147|ref|ZP_16704571.1| 30S ribosomal protein S1, partial [Pseudomonas syringae Cit 7]
gi|330953535|gb|EGH53795.1| 30S ribosomal protein S1 [Pseudomonas syringae Cit 7]
Length = 494
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 31/214 (14%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQG-FNG---GGLLVRFFSL 122
V+ LD D SR A E+ F E ++G NG GG V +
Sbjct: 1 VHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVNGI 60
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS--------- 173
FLP + + + + H L G + KVI+ +++ +V S
Sbjct: 61 RAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRSVLEAEN 111
Query: 174 --EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
E++A+ V+ I DYGAF+ L DGL H+T +++W I+
Sbjct: 112 SAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPS 165
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 166 EIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 199
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 235 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 288
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 289 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 343
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 344 KGDELDTVILSVDPERERISLGIKQLESDPFSE 376
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 108 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 166
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 167 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 219
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 220 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 273
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 274 RISLGIKQCKSNP 286
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 407 IEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 453
>gi|241662463|ref|YP_002980823.1| 30S ribosomal protein S1 [Ralstonia pickettii 12D]
gi|309781045|ref|ZP_07675783.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
gi|404394042|ref|ZP_10985846.1| 30S ribosomal protein S1 [Ralstonia sp. 5_2_56FAA]
gi|240864490|gb|ACS62151.1| ribosomal protein S1 [Ralstonia pickettii 12D]
gi|308920111|gb|EFP65770.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
gi|348614272|gb|EGY63824.1| 30S ribosomal protein S1 [Ralstonia sp. 5_2_56FAA]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNHKKGDKLAGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|332141546|ref|YP_004427284.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551568|gb|AEA98286.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
ecotype']
Length = 504
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V S+ FLP + +
Sbjct: 72 REKAKRHEAWVELEKAYDDKATI-KGVINGKVKGGFTVEVNSVRAFLPGSLVD----VRP 126
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVED---- 190
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 127 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLLANLEEGHEI 181
Query: 191 ---IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 182 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 235
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EK R++L +KQ+ DP E + P+G
Sbjct: 236 KEKQRVSLGMKQMGNDPWQEIASR-YPEG 263
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G G++ G V V G + +M ++ P K ++
Sbjct: 253 WQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVN--- 309
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K + W ++ D G+ D+G F
Sbjct: 310 ---LGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIF 366
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
I L DG + GLVH+S++SW D ++D + +GDE+ V+++D E+ RI+L
Sbjct: 367 IGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVDPERERISL 417
Query: 256 SIKQLEEDPL 265
+KQ+EEDP
Sbjct: 418 GVKQIEEDPF 427
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 161 EAESSAERETLLANLEEGHEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 219
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ ++E +++ K + W + +SR G+
Sbjct: 220 IVN------VGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNL 273
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 274 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRR 327
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 328 ISLGLKQCIANP 339
>gi|17545628|ref|NP_519030.1| 30S ribosomal protein S1 [Ralstonia solanacearum GMI1000]
gi|17427921|emb|CAD14611.1| probable 30s ribosomal subunit protein s1 [Ralstonia solanacearum
GMI1000]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNHKKGDKLAGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID EK RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVEKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|299066876|emb|CBJ38071.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CMR15]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ ++ + + D + +++ A W ESG I G + G
Sbjct: 61 GELEVQVGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALESGEIISGTVTGKVK 120
Query: 113 GGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA 163
GGL V R F SLV P +P + K + + ++ + ++S + V++A
Sbjct: 121 GGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEA 179
Query: 164 --NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSE 220
EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 180 TLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL----- 226
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPY 280
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG +
Sbjct: 227 -AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQGTRLF 284
Query: 281 LK 282
K
Sbjct: 285 GK 286
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLAGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID EK RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVEKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|113866824|ref|YP_725313.1| 30S ribosomal protein S1 [Ralstonia eutropha H16]
gi|339324961|ref|YP_004684654.1| 30S ribosomal protein S1 [Cupriavidus necator N-1]
gi|113525600|emb|CAJ91945.1| SSU ribosomal protein S1 [Ralstonia eutropha H16]
gi|338165118|gb|AEI76173.1| 30S ribosomal protein S1 [Cupriavidus necator N-1]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L G+ A ++ + + D + +++ A W E G I G +
Sbjct: 59 LNDQGELEVQAGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALEDGEIISGTVT 118
Query: 109 GFNGGGLLV-----RFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK- 159
G GGL V R F SLV P +P + K + + ++ + ++S +
Sbjct: 119 GKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTP-YEGKTLEFKVIKLDRKRNNVVLSRRA 177
Query: 160 VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 216
V++A EE +KL+ + K+ A+ N + DYGAF+ L DGL H+T L
Sbjct: 178 VVEATLGEERQKLMETLKEGAIVNGIVKNIT--------DYGAFVDLGGIDGLLHITDL- 228
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+W ++ ++L+ G E+ K++K D+EK+R++L +KQL EDP + + + PQG
Sbjct: 229 -----AWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWV-GISRRYPQG 282
Query: 277 LEPYLK 282
+ K
Sbjct: 283 TRLFGK 288
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 276 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 328
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ +S D G+ D+G FI L
Sbjct: 329 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFSRNHKKGDKLAGQIKSITDFGVFIGL 388
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 389 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSG 443
Query: 263 DPL 265
DP
Sbjct: 444 DPF 446
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+++ V+ +DR+ I LSIK + E ++K
Sbjct: 479 VEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKSRNINLSIKAKDSAEQQEAMQK 538
>gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|383328526|ref|YP_005354410.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|415894979|ref|ZP_11550475.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|424786294|ref|ZP_18213084.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|424938690|ref|ZP_18354462.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|424956864|ref|ZP_18371621.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|424973500|ref|ZP_18386777.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|424980623|ref|ZP_18393405.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|424983213|ref|ZP_18395813.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|424986625|ref|ZP_18399034.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|424989623|ref|ZP_18401883.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|424998474|ref|ZP_18410158.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|425001445|ref|ZP_18412960.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|425011585|ref|ZP_18422476.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|425013337|ref|ZP_18424073.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|425020476|ref|ZP_18430780.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|425022907|ref|ZP_18433060.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|425031841|ref|ZP_18436942.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|427395181|ref|ZP_18888103.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430820410|ref|ZP_19439042.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430821943|ref|ZP_19440524.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430825063|ref|ZP_19443274.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430830280|ref|ZP_19448338.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430836240|ref|ZP_19454223.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430844532|ref|ZP_19462430.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430846512|ref|ZP_19464371.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430850112|ref|ZP_19467878.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430852811|ref|ZP_19470542.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430854381|ref|ZP_19472094.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430861941|ref|ZP_19479293.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430864427|ref|ZP_19480349.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430870377|ref|ZP_19483232.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430958937|ref|ZP_19486801.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|431193736|ref|ZP_19500243.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|431259185|ref|ZP_19505362.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|431295479|ref|ZP_19507367.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|431368570|ref|ZP_19509384.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|431436377|ref|ZP_19513076.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|431503059|ref|ZP_19515295.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|431539188|ref|ZP_19517692.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|431626809|ref|ZP_19523048.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|431743456|ref|ZP_19532335.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|431748753|ref|ZP_19537508.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|431754384|ref|ZP_19543045.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|431758862|ref|ZP_19547483.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|431766288|ref|ZP_19554781.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|431766752|ref|ZP_19555213.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|431770371|ref|ZP_19558771.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|431772892|ref|ZP_19561228.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|431776242|ref|ZP_19564509.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|431778301|ref|ZP_19566512.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|431782343|ref|ZP_19570478.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|431785272|ref|ZP_19573298.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|447912882|ref|YP_007394294.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|364091873|gb|EHM34296.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|378938220|gb|AFC63292.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|402923340|gb|EJX43637.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|402936419|gb|EJX55600.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|402944868|gb|EJX63257.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|402958458|gb|EJX75771.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|402966069|gb|EJX82740.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|402972211|gb|EJX88429.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|402976087|gb|EJX92008.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|402981505|gb|EJX97031.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|402982909|gb|EJX98342.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|402986636|gb|EJY01750.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|402996323|gb|EJY10715.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|403001339|gb|EJY15400.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|403009171|gb|EJY22635.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|403011657|gb|EJY24951.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|403014602|gb|EJY27590.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|425724317|gb|EKU87201.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430439541|gb|ELA49877.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430443775|gb|ELA53737.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430446564|gb|ELA56232.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430482882|gb|ELA59981.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430488597|gb|ELA65259.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430497122|gb|ELA73181.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430536144|gb|ELA76521.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430538959|gb|ELA79228.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430541645|gb|ELA81790.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430548040|gb|ELA87945.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430549232|gb|ELA89064.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430553974|gb|ELA93648.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430556622|gb|ELA96119.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|430559030|gb|ELA98412.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430572146|gb|ELB11012.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|430577280|gb|ELB15885.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|430581569|gb|ELB20014.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|430584158|gb|ELB22508.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|430586974|gb|ELB25208.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|430587682|gb|ELB25903.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|430594451|gb|ELB32420.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|430603063|gb|ELB40606.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|430606888|gb|ELB44225.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|430613079|gb|ELB50102.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|430618978|gb|ELB55806.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|430626989|gb|ELB63532.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|430627064|gb|ELB63600.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|430631987|gb|ELB68278.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|430635298|gb|ELB71394.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|430637408|gb|ELB73424.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|430641576|gb|ELB77377.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|430643847|gb|ELB79550.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|430647678|gb|ELB83119.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|430647759|gb|ELB83198.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|445188591|gb|AGE30233.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
Length = 409
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDDVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|424863523|ref|ZP_18287435.1| 30S ribosomal protein S1 [SAR86 cluster bacterium SAR86A]
gi|400756844|gb|EJP71056.1| 30S ribosomal protein S1 [SAR86 cluster bacterium SAR86A]
Length = 435
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G F + + D + + ++R + WK E+G GKI
Sbjct: 58 GNFDIKIGDEVEVALEAVEDGYGETRISREKARKISTWKMLEEALETGEFVTGKIHNRVK 117
Query: 113 GGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
GG V + FLP + P + + ++ + KVI+ + + +
Sbjct: 118 GGFAVEVDVVKAFLPGSLVDVRPVKEAPDIENTVQDF-----------KVIKLDYKRNNV 166
Query: 171 VFSEKDAVWNKYSSRVNVE--------DIFVGR-----DYGAFIHLRFPDGLYHLTGLVH 217
V S K AV K +S V VE I G DYGAFI L DGL H+T
Sbjct: 167 VLSRK-AVLEKNNSAVKVELLKNLEEGQIVNGTVKNITDYGAFIDLGGLDGLLHIT---- 221
Query: 218 VSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++SW + + + L G E+ VKV+ D+EK R++L +KQ+ DP
Sbjct: 222 --DISWSRVTNPSEHLTLGQEIEVKVLSFDKEKLRVSLGLKQIHNDP 266
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G I G ++ G + L G L +S S P + + G I
Sbjct: 190 EEGQIVNGTVKNITDYGAFIDLGGLDGLLHITDISWSR-VTNPSEHL------TLGQEIE 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VKV+ ++E ++ K + W S +V I+ DYG F L
Sbjct: 243 VKVLSFDKEKLRVSLGLKQIHNDPWENVESNYSVGGIYEASVSNITDYGCFAQLE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GL+H+SE+ W ++I ++ ++++V +++ID +K RI+L +KQ + +P E
Sbjct: 298 EGIEGLIHLSELDW-TSKNIHPSKVVEMDEKIKVMILEIDHDKRRISLGLKQTKSNPWTE 356
Query: 268 TLEKV-IPQGLEPYLKSF 284
K I +E +KS
Sbjct: 357 FANKYGIGDKVEGNIKSI 374
>gi|227551165|ref|ZP_03981214.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
gi|257887717|ref|ZP_05667370.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
gi|257896211|ref|ZP_05675864.1| ribosomal protein S1 [Enterococcus faecium Com12]
gi|227179727|gb|EEI60699.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
gi|257823771|gb|EEV50703.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
gi|257832776|gb|EEV59197.1| ribosomal protein S1 [Enterococcus faecium Com12]
Length = 417
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 212 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 264
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 265 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 319
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 377
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 378 --PKNVESY 384
>gi|338811526|ref|ZP_08623740.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Acetonema longum DSM 6540]
gi|337276493|gb|EGO64916.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Acetonema longum DSM 6540]
Length = 654
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 25/218 (11%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGF----IYEGKIQGFNGGGLLVRFFSL 122
++ ++ D++ A S+ AD + A E E K+ G GGL V +
Sbjct: 339 IDVVVLDANSAEGSVKLSKVQADKQVAWTKLEEALRENRTLEAKVLGAIKGGLSVAVLGI 398
Query: 123 VGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM----KKLVFSEKDAV 178
GF+P Q+ ++ +++ E A G T ++++V+ ++ + L+ +EK+ +
Sbjct: 399 RGFMPASQVDLKYT-----ENLSEYA-GQTIQCLAIEVVPEKSKVVLSRRALLEAEKERL 452
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
+ ++ V D G D+GAF+ L + GL+H+S++SW ++ +++
Sbjct: 453 GKELFAKWKVGDQVHGTVTRLADFGAFVDLG------GIEGLIHISDLSWQRVKSPSEVV 506
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
N GD V+V ++K+D E RI LS+KQ DP E+
Sbjct: 507 NAGDAVQVIIVKLDSENKRIGLSLKQTMPDPWFTAAEE 544
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---W----NKYSSRVNVEDIFV-GRDYGAFIHL 203
G + V +++ + E K++ S K + W +Y + V + +GAF L
Sbjct: 508 AGDAVQVIIVKLDSENKRIGLSLKQTMPDPWFTAAEEYREGMTVSGVITRTSKFGAFAEL 567
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ + GL+H+SE++ I D ++ + G +V VK++ +D++ +I+LS+ Q ++D
Sbjct: 568 K-----AGVEGLIHISELTDHRINDAKEAVTAGQKVTVKILGVDKKNKKISLSLNQAKQD 622
>gi|307545306|ref|YP_003897785.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
gi|307217330|emb|CBV42600.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
Length = 559
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R+ A WK A E I +G I G GG V S+ FLP + +
Sbjct: 86 REKAKRAEA-WKVLEAAFEKEEIVKGVINGKVKGGFTVDVDSIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ + H L + KVI+ + + +V S E++A+ +
Sbjct: 141 VRDTTH-----LENKELDFKVIKLDPKRNNVVVSRRAVLEAENSAEREALLATLQEGQQI 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
I DYGAF+ L DGL H+T +++W I+ +I+ GDEV VKV+K D
Sbjct: 196 IGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEVNVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + ++ P+G
Sbjct: 250 RERNRVSLGLKQLGEDPWVNIKDR-YPEG 277
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 232
W ++++ N D G D+G FI L + GLVH+S++SW + ++
Sbjct: 354 WETFNAQYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTEGGEEAVRQ 408
Query: 233 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+GDE ++ ID E+ RI+L IKQL+ DP+ E L
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQLDTDPVAEFL 445
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K +++ + K
Sbjct: 474 VVAVLKASEISADRVEDARNVLNEGDSVEARIVGVDRKNRQINLSVKAKDQEDTRRNMSK 533
Query: 272 VIPQGLE 278
+ Q E
Sbjct: 534 LRDQDAE 540
>gi|207743935|ref|YP_002260327.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
gi|300704750|ref|YP_003746353.1| 30S ribosomal protein S1 [Ralstonia solanacearum CFBP2957]
gi|386334110|ref|YP_006030281.1| 30S ribosomal protein S1 [Ralstonia solanacearum Po82]
gi|206595337|emb|CAQ62264.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
gi|299072414|emb|CBJ43759.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CFBP2957]
gi|334196560|gb|AEG69745.1| 30S ribosomal protein S1 [Ralstonia solanacearum Po82]
Length = 562
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLSGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|312882500|ref|ZP_07742241.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369900|gb|EFP97411.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 556
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 65 TTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFF 120
+ V+ LD D SR A W E G I G GG V
Sbjct: 66 SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETVVGIINGKVKGGFTVELN 125
Query: 121 SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS------- 173
+ FLP + + I + A L + KVI+ +++ +V S
Sbjct: 126 GIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVIKLDQKRNNVVVSRRAVIES 176
Query: 174 ----EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
E+D + V+ I DYGAF+ L DGL H+T +++W ++
Sbjct: 177 ENSVERDELLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
+I+N GDE++VKV+K DRE++R++L +KQL EDP + + K P+G
Sbjct: 231 PSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 324 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVTGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGAEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 268
+ G + SEVS D ++D IL GD + K +DR+ I LS+K + EE + T
Sbjct: 474 VEGYIRASEVSRDRVEDASLILTVGDSIEAKFTGVDRKNRVINLSVKAKDEAEEQEAMAT 533
Query: 269 LEK 271
L K
Sbjct: 534 LNK 536
>gi|452821105|gb|EME28139.1| 30S ribosomal protein S1 (plastid) [Galdieria sulphuraria]
Length = 523
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 21/180 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK + + E ++ N GG LV + + GFLP +S P S+ E
Sbjct: 271 WKKLNSALDEASTVEAQVVAVNRGGCLVLVYGIRGFLPISHISL------PGTSLEE--- 321
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
+ G VK ++ ++ +LV S + A+ + + + G + YG F+ +
Sbjct: 322 -MVGHKYPVKCLEVDKSKGRLVVSHRRAMAERQMEHLKTGALVEGTVQGVKPYGVFVDV- 379
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ +GL+H+S++S D + +I+ + G++V+ V+ D+++ RI+LS K LE P
Sbjct: 380 -----FGTSGLLHISQISHDQVANIQSLFLPGEKVKCMVVSFDKQRGRISLSTKALEPHP 434
>gi|187927875|ref|YP_001898362.1| 30S ribosomal protein S1 [Ralstonia pickettii 12J]
gi|187724765|gb|ACD25930.1| ribosomal protein S1 [Ralstonia pickettii 12J]
Length = 562
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 89 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 148
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 149 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 206
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 207 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 253
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 254 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 286
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 274 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 326
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 327 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLAGQIKSITDFGVFIGL 386
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 387 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 441
Query: 263 DPL 265
DP
Sbjct: 442 DPF 444
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 477 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 536
>gi|431931228|ref|YP_007244274.1| 30S ribosomal protein S1 [Thioflavicoccus mobilis 8321]
gi|431829531|gb|AGA90644.1| ribosomal protein S1 [Thioflavicoccus mobilis 8321]
Length = 559
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 36/234 (15%)
Query: 67 VNPILDDSSDANNRQSQSRSSADWKAARAYKESGF----IYEGKIQGFNGGGLLVRFFSL 122
V LD D SR A AA Y E F +G I G GG V S+
Sbjct: 68 VQVALDAVEDGTGATRLSREKAKRFAAWDYLEKAFEAGDTVKGLINGKVKGGFTVELGSV 127
Query: 123 VGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN 180
FLP + P L G KVI+ + +V S + V
Sbjct: 128 RAFLPGSLVDVRPVRDTTY-----------LEGKEQEFKVIKLDRRRNNVVVSRRAVVEE 176
Query: 181 KYSSR-----VNVEDIFVGR-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 228
+YS+ N+E+ + DYGAF+ L DGL H+T +++W ++
Sbjct: 177 EYSAEREALLKNLEEGMELKGIVKNLTDYGAFLDLGGIDGLLHIT------DMAWRRVKH 230
Query: 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
+++ GD++ VKV+K DRE+ R++L +KQ+ EDP + + + P+G + K
Sbjct: 231 PSEVVEIGDDIMVKVLKFDRERQRVSLGLKQMGEDPWI-NISRRYPEGTRVFGK 283
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y E ++ GK+ G V V G + +M ++ P K +
Sbjct: 271 SRRYPEGTRVF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNVHPTKVV------A 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W+++++ D G D+G FI L
Sbjct: 324 LGDEVEVMVLDIDEERRRISLGIKQCQSNPWDEFAATHKKGDHVAGEIKSITDFGIFIGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG + GLVH+S++SWD Q +R +GD + V+ +D E+ RI+L +KQL+
Sbjct: 384 ---DG--GIDGLVHLSDISWDESGEQALRR-YKKGDRLETVVLSVDPERERISLGVKQLD 437
Query: 262 EDPL 265
+DP
Sbjct: 438 KDPF 441
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 23/188 (12%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHE 146
SA+ +A E G +G ++ G + + G L M+ K P + +
Sbjct: 179 SAEREALLKNLEEGMELKGIVKNLTDYGAFLDLGGIDGLLHITDMA-WRRVKHPSEVVE- 236
Query: 147 IAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYG 198
G I VKV++ + E +++ K + W S R G+ DYG
Sbjct: 237 -----IGDDIMVKVLKFDRERQRVSLGLKQMGEDPWINISRRYPEGTRVFGKVTNIADYG 291
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLS 256
F+ + + GLVHVSE+ W +++ ++ GDEV V V+ ID E+ RI+L
Sbjct: 292 CFVEIE-----EGVEGLVHVSEMDW-TNKNVHPTKVVALGDEVEVMVLDIDEERRRISLG 345
Query: 257 IKQLEEDP 264
IKQ + +P
Sbjct: 346 IKQCQSNP 353
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ G + SE+S D I+D R +L GD V K + +DR+ I+LSIK + D
Sbjct: 474 VEGYLRASEISRDRIEDARAVLKVGDSVEAKFVGVDRKNRTISLSIKAKDVD 525
>gi|257884883|ref|ZP_05664536.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
gi|257820721|gb|EEV47869.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
Length = 417
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 212 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDLL------AVNDDVNVK 264
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 265 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 319
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 377
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 378 --PKNVESY 384
>gi|431228354|ref|ZP_19501495.1| ribosomal protein S1 [Enterococcus faecium E1622]
gi|430574656|gb|ELB13419.1| ribosomal protein S1 [Enterococcus faecium E1622]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVLS------VNDDVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|257898849|ref|ZP_05678502.1| ribosomal protein S1 [Enterococcus faecium Com15]
gi|425053986|ref|ZP_18457501.1| putative ribosomal protein S1 [Enterococcus faecium 505]
gi|257836761|gb|EEV61835.1| ribosomal protein S1 [Enterococcus faecium Com15]
gi|403036910|gb|EJY48243.1| putative ribosomal protein S1 [Enterococcus faecium 505]
Length = 417
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 212 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 264
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 265 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 319
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 377
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 378 --PKNVESY 384
>gi|392960771|ref|ZP_10326236.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans DSM 17108]
gi|421054471|ref|ZP_15517439.1| hydroxymethylbutenyl pyrophosphate reductase [Pelosinus fermentans
B4]
gi|421057827|ref|ZP_15520592.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans B3]
gi|421067200|ref|ZP_15528705.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A12]
gi|421071333|ref|ZP_15532453.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A11]
gi|392440829|gb|EIW18489.1| hydroxymethylbutenyl pyrophosphate reductase [Pelosinus fermentans
B4]
gi|392447249|gb|EIW24503.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A11]
gi|392450628|gb|EIW27660.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A12]
gi|392454668|gb|EIW31490.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans DSM 17108]
gi|392462106|gb|EIW38224.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans B3]
Length = 655
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 36/233 (15%)
Query: 58 NAAKITP--TTVNP-ILDDSSDANNRQSQSRSSA--DWKAARAYKESGFIYEGKIQGFNG 112
NAA+I T++ +LD S+ + S+ ++ A W E+ E K+
Sbjct: 330 NAAEIVSEGQTIDVFVLDLESNDGIKLSKVKADAIVAWDVLEEALENKKQVEAKVLEVVN 389
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + GF+P Q+ + + +++ TG ++ + I+ + K+ +
Sbjct: 390 GGLKVSVLGVHGFVPASQVEL--------RFVEDLSP-FTGQTLTFQPIEVDRIKKRAIL 440
Query: 173 SEKDAVWNKYSSRVNVEDIF----VGR----------DYGAFIHLRFPDGLYHLTGLVHV 218
S K V + R+ E+IF VG+ D+GAF+ + DGL VH+
Sbjct: 441 SRK--VILQEQRRILEEEIFSKLAVGQIVSGTVRRIVDFGAFVDIGGIDGL------VHI 492
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
S++SW ++ ++I+ GD+V+V ++KID E RI+LS+K++ DP L+ +E+
Sbjct: 493 SDLSWHRVKSPQEIVALGDQVKVLILKIDNEAKRISLSLKEVGRDPWLDLIEQ 545
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I G ++ G V + G + +S H K PQ+ + G + V
Sbjct: 464 GQIVSGTVRRIVDFGAFVDIGGIDGLVHISDLS-WHRVKSPQEIV------ALGDQVKVL 516
Query: 160 VIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
+++ + E K++ S K+ W + ++ I G+ +GAF+ L +
Sbjct: 517 ILKIDNEAKRISLSLKEVGRDPWLDLIEQYSIGAIEKGKVTKITKFGAFVEL-----VPG 571
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH+SE+S + + + DI+ G EV VK+++I++E RI+LSI + ++D
Sbjct: 572 IEGLVHMSELSDERVNKVEDIVAIGQEVTVKILEINKENKRISLSINKAQQD 623
>gi|424765175|ref|ZP_18192578.1| putative ribosomal protein S1 [Enterococcus faecium TX1337RF]
gi|402417197|gb|EJV49501.1| putative ribosomal protein S1 [Enterococcus faecium TX1337RF]
Length = 417
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 212 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 264
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 265 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 319
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 377
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 378 --PKNVESY 384
>gi|238926860|ref|ZP_04658620.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
gi|238885392|gb|EEQ49030.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
Length = 370
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 77 ANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132
+N S S+ AD WK KE G E K+ GGL+ L GF+P QM
Sbjct: 75 GDNGGSLSKVEADKMAAWKDIEVIKEKGETVEAKVAKEVKGGLVAYVMGLRGFIPASQME 134
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----EKDAVWNKYS--SR 185
H K+ + + + ++I+ + + ++LV S E+D + + S
Sbjct: 135 -LHFVKDLSVYVDQT--------VEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSA 185
Query: 186 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR 240
+ E I G DYGAFI + DGL H+S+++W ++ ++L G E+
Sbjct: 186 IEPEQIVRGTVKRLVDYGAFIDIGGVDGL------AHISDLAWHRVKHPSEVLEVGQELD 239
Query: 241 VKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
V V +DR+ RI+LS+K DP +E EK
Sbjct: 240 VYVKSVDRDTKRISLSVKDTLPDPWIEKAEK 270
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 135 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDI 191
H K P + + G + V V + + K++ S KD + W + + + D
Sbjct: 223 HRVKHPSEVLE------VGQELDVYVKSVDRDTKRISLSVKDTLPDPWIEKAEKYAEGDF 276
Query: 192 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G+ D+GAF+ + P GL+ + E++ I+ + ++ GD V VKV++I
Sbjct: 277 IEGKIIKLTDFGAFMEIE-P----GFDGLIPMGELAEKRIERADEAVHTGDIVIVKVLRI 331
Query: 247 DREKSRITLSIKQLEED 263
D ++ RI+LSI + + D
Sbjct: 332 DTKRKRISLSITKAKRD 348
>gi|83749856|ref|ZP_00946824.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
gi|83723469|gb|EAP70679.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
Length = 566
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 93 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 152
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 153 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 210
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 211 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 257
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 258 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 290
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 278 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 330
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 331 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLSGQIKSITDFGVFIGL 390
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 391 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 445
Query: 263 DPL 265
DP
Sbjct: 446 DPF 448
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 481 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 540
>gi|410584446|ref|ZP_11321549.1| ribosomal protein S1 [Thermaerobacter subterraneus DSM 13965]
gi|410504381|gb|EKP93892.1| ribosomal protein S1 [Thermaerobacter subterraneus DSM 13965]
Length = 558
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAFI L DGL +HVSE+ W I RD+L EGD ++VKV+K+DRE+ RI+L
Sbjct: 358 DFGAFIDLGGVDGL------LHVSEMHWGRIDHPRDLLKEGDTIQVKVLKVDRERGRISL 411
Query: 256 SIKQLEEDP 264
S+K+L DP
Sbjct: 412 SLKELMPDP 420
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + G ++G G + + G L +M P+ + E G I
Sbjct: 344 EEGQVRTGVVKGLTDFGAFIDLGGVDGLLHVSEMHWGR-IDHPRDLLKE------GDTIQ 396
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ S K+ + W+ R V G +GAF+ L
Sbjct: 397 VKVLKVDRERGRISLSLKELMPDPWSDVERRYPVGATVKGTVVRLVPFGAFVRLE----- 451
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVH+S+++ ++ ++++EG EV V+V+++ E+ RI+LS++ E
Sbjct: 452 PGVEGLVHISQLADHRVESPDEVVHEGQEVEVRVLRVQPEERRISLSMRSPAE 504
>gi|431756349|ref|ZP_19544981.1| ribosomal protein S1 [Enterococcus faecium E3083]
gi|430620203|gb|ELB57005.1| ribosomal protein S1 [Enterococcus faecium E3083]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|431751502|ref|ZP_19540190.1| ribosomal protein S1 [Enterococcus faecium E2620]
gi|430615283|gb|ELB52241.1| ribosomal protein S1 [Enterococcus faecium E2620]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
Length = 519
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 13/121 (10%)
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 208
G + VKV+ +++ KK+ S K + W +++ DI G + P+G
Sbjct: 317 VGDKVKVKVLSIDKDKKKITLSYKQVLGDPWKDIDEKLHEGDIVDG-----VVEKILPNG 371
Query: 209 LY-----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
L LTG HVSE+SW+ + ++ D+ EGD+V+VKV+ +D+E +I LS+KQ +E+
Sbjct: 372 LIIKLDNELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKLSVKQAKEN 431
Query: 264 P 264
P
Sbjct: 432 P 432
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 22/192 (11%)
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ EG + G GL + + L P+ S K +++I + G II K+
Sbjct: 187 LVEGVVTGIKEFGLFISLNPYITAL-VPKSEISWDKKVDINEMYKIGDKVKGIII--KLD 243
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAF---IHLRFPDGLYHLTGLVHV 218
+ N ++ V KD W V+ I G F ++ +G+ GLVH
Sbjct: 244 KENRKISVSVKRLKDDPWETVEKDYPVDSIVEGEVIEIFPFGFAVKLGEGI---EGLVHE 300
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE----------- 267
SE+ W + I D+++ GD+V+VKV+ ID++K +ITLS KQ+ DP +
Sbjct: 301 SEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQVLGDPWKDIDEKLHEGDIV 360
Query: 268 --TLEKVIPQGL 277
+EK++P GL
Sbjct: 361 DGVVEKILPNGL 372
>gi|293570248|ref|ZP_06681317.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
gi|430840956|ref|ZP_19458877.1| ribosomal protein S1 [Enterococcus faecium E1007]
gi|431068950|ref|ZP_19494143.1| ribosomal protein S1 [Enterococcus faecium E1604]
gi|431102177|ref|ZP_19496788.1| ribosomal protein S1 [Enterococcus faecium E1613]
gi|431580923|ref|ZP_19520015.1| ribosomal protein S1 [Enterococcus faecium E1861]
gi|431738037|ref|ZP_19526987.1| ribosomal protein S1 [Enterococcus faecium E1972]
gi|431740465|ref|ZP_19529380.1| ribosomal protein S1 [Enterococcus faecium E2039]
gi|291609655|gb|EFF38916.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
gi|430494687|gb|ELA70922.1| ribosomal protein S1 [Enterococcus faecium E1007]
gi|430567889|gb|ELB06956.1| ribosomal protein S1 [Enterococcus faecium E1604]
gi|430570405|gb|ELB09366.1| ribosomal protein S1 [Enterococcus faecium E1613]
gi|430594690|gb|ELB32654.1| ribosomal protein S1 [Enterococcus faecium E1861]
gi|430598073|gb|ELB35833.1| ribosomal protein S1 [Enterococcus faecium E1972]
gi|430603329|gb|ELB40859.1| ribosomal protein S1 [Enterococcus faecium E2039]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|56460463|ref|YP_155744.1| 30S ribosomal protein S1 [Idiomarina loihiensis L2TR]
gi|56179473|gb|AAV82195.1| Ribosomal protein S1 [Idiomarina loihiensis L2TR]
Length = 560
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +A++++ + G I G GG V + FLP + +
Sbjct: 86 REKAKRYEAWLQLEKAHEDNATVI-GIISGKVKGGFTVDLGGVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+++ H L + KVI+ +++ +V S + + + S+ +E++ G+
Sbjct: 141 VRETTH-----LENKDLEFKVIKLDQKRNNVVVSRRAVIEKENSAEREELLENLQEGQEV 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 QGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
RE++R++L +KQL EDP + + P+G
Sbjct: 250 RERTRVSLGLKQLGEDPWADIANR-YPEG 277
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
A Y E G G++ G V V G + +M ++ P K ++
Sbjct: 271 ANRYPE-GHRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVN------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
+ V V++ +EE +++ K W +++ N + G+ D+G FI L
Sbjct: 324 LDDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKNHNKGEQVTGKIKSITDFGIFIGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
DG + GLVH+S++SW+ + +RD +G+EV V+++D E+ RI+L IKQLE
Sbjct: 384 ---DG--GIDGLVHLSDISWNATGEEAVRD-YKKGEEVTAVVMQVDAERERISLGIKQLE 437
Query: 262 EDPL 265
EDP
Sbjct: 438 EDPF 441
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGQEVQGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWADIANRYPEGHRLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++N D V V V++ID E+ RI+L +KQ + +P E
Sbjct: 298 EGVEGLVHVSEMDW-TNKNVHPSKVVNLDDTVEVMVLEIDEERRRISLGLKQCKPNPWEE 356
>gi|421888900|ref|ZP_16319975.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum K60-1]
gi|378965722|emb|CCF96723.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum K60-1]
Length = 566
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W ESG I G + G GGL V R F SLV P +
Sbjct: 93 RDKAKRLASWLNLEKALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTT 152
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVK-VIQA--NEEMKKLVFSEKD-AVWNKYSSRVNV 188
P + K + + ++ + ++S + V++A EE +KL+ + K+ A+ N +
Sbjct: 153 P-YEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNIT- 210
Query: 189 EDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
DYGAF+ L DGL H+T L +W ++ ++L+ G E+ K++K D+
Sbjct: 211 -------DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKILKFDQ 257
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL EDP + + + PQG + K
Sbjct: 258 EKNRVSLGVKQLGEDPWV-GISRRYPQGTRLFGK 290
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + + G + +M ++ P K +
Sbjct: 278 SRRYPQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQ------ 330
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +E+ +++ K W+ ++ D G+ D+G FI L
Sbjct: 331 LGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLSGQIKSITDFGVFIGL 390
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW + ++ +GDEV V+ ID +K RI+L IKQL
Sbjct: 391 --PGGI---DGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSG 445
Query: 263 DPL 265
DP
Sbjct: 446 DPF 448
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R++L EG+ + ++ IDR+ I +SIK + E ++K
Sbjct: 481 VEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQK 540
>gi|226939798|ref|YP_002794871.1| 30S ribosomal protein S1 [Laribacter hongkongensis HLHK9]
gi|226714724|gb|ACO73862.1| RpsA [Laribacter hongkongensis HLHK9]
Length = 559
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ A W E+G I G I G GGL V S+ FLP S P
Sbjct: 85 RDKAKRMAAWLELEEALEAGKILSGVISGKVKGGLTVMVNSIRAFLP-----GSLVDVRP 139
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
K G I KVI+ + + +V S E+ A+ V+
Sbjct: 140 VKDTTP----FEGKQIEFKVIKLDRKRNNVVVSRRAVLEETLGEERKALLESLKEGAIVK 195
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
I DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+
Sbjct: 196 GIVKNITDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQ 249
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQG 276
EK+R++L +KQL EDP + L + P G
Sbjct: 250 EKNRVSLGLKQLGEDPWV-GLSRRYPSG 276
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E+ +++ K + W+
Sbjct: 301 GLVHVSEMDWTNKNVHPSKVVS------LGDEVEVMILEIDEDRRRISLGMKQCMPNPWD 354
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+S+ D G D+G FI L P G+ GLVH+S++SW + + IR+
Sbjct: 355 DFSANYKKGDKIRGAIKSITDFGVFIGL--PGGI---DGLVHLSDLSWSVAGEEAIRN-F 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV V+ ID +K RI++ IKQLE DP
Sbjct: 409 KKGDEVEAMVLSIDTDKERISMGIKQLEGDPF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I +G ++ G V + G L ++ K P + + G + K
Sbjct: 191 GAIVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLA------VGDEVEAK 243
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K + W S R GR DYGAF+ +
Sbjct: 244 VLKFDQEKNRVSLGLKQLGEDPWVGLSRRYPSGTRLFGRVTNLTDYGAFVEIE-----QG 298
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ +++ GDEV V +++ID ++ RI+L +KQ +P
Sbjct: 299 IEGLVHVSEMDW-TNKNVHPSKVVSLGDEVEVMILEIDEDRRRISLGMKQCMPNP 352
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE++ D ++D R +L EG+E+ +I +DR+ + LSIK
Sbjct: 480 SELARDRVEDARSLLKEGEEIEALIINVDRKSRSVKLSIK 519
>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
Length = 591
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 71 LDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFL 126
L++ D N S+ AD W A + EG+I GG+ V L FL
Sbjct: 97 LEEREDVNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFL 155
Query: 127 PFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSS 184
P Q+ + + ++ + L G I V++I+ N++ ++ S + + W
Sbjct: 156 PGSQID--------LRPVRDMDR-LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRK 206
Query: 185 RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 234
+V ++ + G DYGAFI L DGL +H++++SW + + ++ +N
Sbjct: 207 KVTMDALKEGEILEGIVKNITDYGAFIDLGGIDGL------LHITDMSWGRVTNPQEFMN 260
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GD+V V V+K D+E R++L +KQL DP
Sbjct: 261 VGDKVNVVVLKHDKETGRVSLGLKQLTPDP 290
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 89 DWKAAR------AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+W+ R A KE G I EG ++ G + + G L MS PQ+
Sbjct: 200 EWRDRRKKVTMDALKE-GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGR-VTNPQE 257
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKY--SSRVNVEDIFV 193
++ G ++V V++ ++E +K+L V +Y +RVN + +
Sbjct: 258 FMN------VGDKVNVVVLKHDKETGRVSLGLKQLTPDPWTTVGTRYPEGTRVNARVVSI 311
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GL+HV+E+SW+ ++ I++ GD + V+V+KID + +
Sbjct: 312 -TDYGAFLEIE-----PGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRK 365
Query: 253 ITLSIKQLEEDP 264
I+L +KQL +P
Sbjct: 366 ISLGLKQLGPNP 377
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 26/213 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W G + GKI+ G V + G + MS + + P + +
Sbjct: 378 WDDVETKYPVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKK-- 435
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS----RVNVEDIFVG-----RDYGA 199
G + V V++ +E ++L K + + S R V G D+G
Sbjct: 436 ----GQKVEVVVLKIEKERQRLSLGFKQVSEDPWDSDIPSRFPVGSFLDGVVTKVMDFGF 491
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I LS+K
Sbjct: 492 FVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGLSMKA 546
Query: 260 LEEDPLLETLEKVIPQ-----GLEPYLKSFYKK 287
+ D LE V Q +E LKS KK
Sbjct: 547 VSADSPLEAAPAVNAQPAPGNAMEEALKSARKK 579
>gi|410478645|ref|YP_006766282.1| 30S ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
gi|406773897|gb|AFS53322.1| ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
Length = 591
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 71 LDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFL 126
L++ D N S+ AD W A + EG+I GG+ V L FL
Sbjct: 97 LEEREDVNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFL 155
Query: 127 PFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSS 184
P Q+ + + ++ + L G I V++I+ N++ ++ S + + W
Sbjct: 156 PGSQID--------LRPVRDMDR-LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRK 206
Query: 185 RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 234
+V ++ + G DYGAFI L DGL +H++++SW + + ++ +N
Sbjct: 207 KVTMDALKEGEVLEGIVKNITDYGAFIDLGGIDGL------LHITDMSWGRVTNPQEFMN 260
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GD+V V V+K D+E R++L +KQL DP
Sbjct: 261 VGDKVNVVVLKHDKETGRVSLGLKQLTPDP 290
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 30/192 (15%)
Query: 89 DWKAAR------AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+W+ R A KE G + EG ++ G + + G L MS PQ+
Sbjct: 200 EWRDRRKKVTMDALKE-GEVLEGIVKNITDYGAFIDLGGIDGLLHITDMSWGR-VTNPQE 257
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKY--SSRVNVEDIFV 193
++ G ++V V++ ++E +K+L V ++Y +RVN + +
Sbjct: 258 FMN------VGDKVNVVVLKHDKETGRVSLGLKQLTPDPWTTVGSRYPEGTRVNARVVSI 311
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GL+HV+E+SW+ ++ I++ GD + V+V+KID + +
Sbjct: 312 -TDYGAFLEIE-----PGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRK 365
Query: 253 ITLSIKQLEEDP 264
I+L +KQL +P
Sbjct: 366 ISLGLKQLGPNP 377
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 26/213 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W G + GKI+ G V + G + MS + + P + +
Sbjct: 378 WDDVEGKYPVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKK-- 435
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS----RVNVEDIFVG-----RDYGA 199
G + V V++ +E ++L K + + S R V G D+G
Sbjct: 436 ----GQKVDVVVLKIEKERQRLSLGFKQVSEDPWDSDIPSRFPVGSFLDGVVTKVMDFGF 491
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I LS+K
Sbjct: 492 FVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGLSMKA 546
Query: 260 LEEDPLLETLEKVIPQ-----GLEPYLKSFYKK 287
+ D LE V Q +E LKS KK
Sbjct: 547 VSADAPLEPAPAVSAQPAPGNAMEEALKSARKK 579
>gi|254876014|ref|ZP_05248724.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842035|gb|EET20449.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 76 DANNRQ-----SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
DA+N + Q R++ W + G GKI+ G+ F L G +
Sbjct: 336 DADNHRISLGIKQCRANP-WNEFEKNYKPGDKVTGKIRSITEFGV---FIGLEGGIDGLV 391
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE- 189
+ P K+I E+ KG + ++ N +++++ S K + + + +N+
Sbjct: 392 HISDVAWDNPAKAIKELKKG---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHP 448
Query: 190 -------DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 242
++ +D GA + L D ++ G + +SE+S + +D+RD L+EG EV +
Sbjct: 449 KGSLVKGNVTKVQDNGAVVML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEAR 505
Query: 243 VIKIDREKSRITLSIKQLEED 263
+I ID +K I LSIK ++ED
Sbjct: 506 IINIDAKKRSIALSIKAVDED 526
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 175 EENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 234 VLS------IGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 288 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 342
Query: 254 TLSIKQLEEDP 264
+L IKQ +P
Sbjct: 343 SLGIKQCRANP 353
>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752625|ref|ZP_16189645.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|421754490|ref|ZP_16191461.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|421758219|ref|ZP_16195075.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|421760044|ref|ZP_16196867.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|424675368|ref|ZP_18112275.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409084514|gb|EKM84687.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|409084662|gb|EKM84831.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|409089635|gb|EKM89670.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|409090074|gb|EKM90098.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|417434123|gb|EKT89095.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEINVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 252 RITLSIKQLEED 263
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 175 EENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I+VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 234 VLS------IGQEINVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 288 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 342
Query: 254 TLSIKQLEEDPLLE 267
+L IKQ +P E
Sbjct: 343 SLGIKQCRPNPWSE 356
>gi|187932250|ref|YP_001892235.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713159|gb|ACD31456.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W E+ GKI GG + L FLP + + I ++A
Sbjct: 95 WDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH 146
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDY 197
L I +KV++ + + +V S K DA+ K S ++ I D+
Sbjct: 147 -LEDKDIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLKGIVKNITDF 205
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L I
Sbjct: 206 GAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGI 259
Query: 258 KQLEEDPLL 266
KQL EDP L
Sbjct: 260 KQLGEDPWL 268
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 19/161 (11%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 252 RITLSIKQLEEDPLLE-----TLEKVIPQGLEPYLKSFYKK 287
ITLSIK ++ED +EK+ P L +K K
Sbjct: 515 SITLSIKAVDEDNTAAGKSNYKVEKMTPTTLGDLIKEQLNK 555
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 205 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 264 PLLE 267
P E
Sbjct: 353 PWSE 356
>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 401
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 306 -QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|452976689|gb|EME76504.1| 30S ribosomal protein S1 [Bacillus sonorensis L12]
Length = 381
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 20/178 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E+G + EGK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EAGQVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQDVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S K+ + W +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKETLPGPWANIGEKVKPGDVLDGTVQRLVSFGAFVEV-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVH+S++S I ++L EG +V+VKV+ ++ + RI+LS+K+LEE+ E
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEAEERISLSMKELEENDKTE 351
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ ES I+E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFESKEIFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +++ V++ + + +++ S + V + S R + + G+ D+
Sbjct: 142 DYKGKTLTLMVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG +V+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K+ P EKV P
Sbjct: 256 KETLPGPWANIGEKVKP 272
>gi|378777286|ref|YP_005185723.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|52628762|gb|AAU27503.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|364508100|gb|AEW51624.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 579
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 43/228 (18%)
Query: 66 TVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFS 121
TV LD D + SR A W+ E+ G I G GG V S
Sbjct: 88 TVEVALDSVEDGHGETLLSREKAKRQEAWRKLSKCHENNETVTGLISGKVKGGFTVEIGS 147
Query: 122 LVGFLPF------PQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175
+ FLP P PS+ L G + KVI+ + + +V S +
Sbjct: 148 IRAFLPGSLVDVRPVRDPSY---------------LEGKELEFKVIKMDLKRNNIVVSRR 192
Query: 176 DAVWNKYSS--RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
V + S+ + +E + G+ DYGAFI L DGL H+T ++SW
Sbjct: 193 AVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHIT------DISW 246
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
++ ++L+ G +V+VKV+ D E++R++L +KQL DP ++ +E+
Sbjct: 247 KRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVER 294
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 104 EGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+GK+ G V V G + +M ++ P K + G ++ V V++
Sbjct: 302 QGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVS------LGDVVDVMVLE 355
Query: 163 ANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 214
+EE +++ K V W +++S N + G+ D+G FI L DG + G
Sbjct: 356 IDEERRRISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGL---DG--DIDG 410
Query: 215 LVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
LVH+S++SW + ++ +G E+ ++ ID E+ RI+L +KQLE D
Sbjct: 411 LVHLSDISWTVPGEEAVKQFKKGQELEAVILAIDPERERISLGLKQLEGDSF 462
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ SSAD +A G G ++ G + + G L +S K P +
Sbjct: 196 EEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLLHITDISWKR-VKHPSE 254
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G + VKV+ + E ++ K + W R + G+
Sbjct: 255 VLS------VGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNI 308
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVH+SE+ W +++ +++ GD V V V++ID E+ R
Sbjct: 309 TDYGCFVEIE-----EGVEGLVHMSEMDW-TNKNVHPSKVVSLGDVVDVMVLEIDEERRR 362
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 363 ISLGMKQCVGNP 374
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
++G + VSE+S + + D I+ GDEV K+ IDR+ I+LS+K
Sbjct: 495 VSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKNRTISLSVK 541
>gi|222612339|gb|EEE50471.1| hypothetical protein OsJ_30517 [Oryza sativa Japonica Group]
Length = 341
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
>gi|328951770|ref|YP_004369104.1| 30S ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
gi|328452094|gb|AEB07923.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
Length = 615
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 28/189 (14%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
AY+E G I EG I GGL V + FLP Q+ +P ++I L G
Sbjct: 150 AYQEDGEI-EGTITAKVKGGLSVDLGGMSAFLPGSQVDL-----QPVRNID----SLIGQ 199
Query: 155 IISVKVIQANEEMKKLVFS-----EKDAVWNKYSSRVNVE--DIFVG-----RDYGAFIH 202
K+++ N++ + +V S EK+ K ++ +E + G DYG F+
Sbjct: 200 TFKFKILKYNKKRRNVVLSRRIIMEKERAEQKSATLAMLEGGKVVNGVVKNITDYGVFVD 259
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
L DGL +HV+++SW I ++ + GD + VK++ DRE +++L +KQL E
Sbjct: 260 LGGIDGL------LHVTDMSWGRIGHPSEVFHVGDPIEVKILNFDRENEKVSLGMKQLTE 313
Query: 263 DPLLETLEK 271
DP L EK
Sbjct: 314 DPWLMATEK 322
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +MS + + P K + I+ +V+
Sbjct: 331 GKVVSLTDYGAFVELEPGVEGLIHVSEMSWTKKVRHPSKIVS------VNDIVESEVLDI 384
Query: 164 NEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGL 215
+ + K++ S K D + KY +E D+G FI + + GL
Sbjct: 385 DPQKKRISLSMKHVEPNPWDIIGEKYPEGTIIEGKIKNITDFGIFIGID-----EGIDGL 439
Query: 216 VHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 274
VH+S++SW I+ +I +G EVR KV+KID+E R +L IKQL EDP +T+++ P
Sbjct: 440 VHISDISWTRRIKHPSEIFKKGQEVRAKVLKIDKENERFSLGIKQLAEDP-WKTIDQRYP 498
Query: 275 QG 276
G
Sbjct: 499 VG 500
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 22/173 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G I EGKI+ G+ + + G + +S + K P EI K G +
Sbjct: 413 GTIIEGKIKNITDFGIFIGIDEGIDGLVHISDISWTRRIKHPS----EIFK--KGQEVRA 466
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 210
KV++ ++E ++ K W R V G D+G FI L
Sbjct: 467 KVLKIDKENERFSLGIKQLAEDPWKTIDQRYPVGKSVSGLVTNKTDFGVFIELE-----E 521
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
+ GL+HVSE+S D + + + GD V KVI + + +I LSI++LE D
Sbjct: 522 GIEGLIHVSELSRDKNKAAQ--VEVGDMVTAKVINVSPKDRKIGLSIRKLEVD 572
>gi|293379547|ref|ZP_06625689.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
gi|431034753|ref|ZP_19491630.1| ribosomal protein S1 [Enterococcus faecium E1590]
gi|431761600|ref|ZP_19550162.1| ribosomal protein S1 [Enterococcus faecium E3548]
gi|292641856|gb|EFF60024.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
gi|430563468|gb|ELB02677.1| ribosomal protein S1 [Enterococcus faecium E1590]
gi|430624292|gb|ELB60942.1| ribosomal protein S1 [Enterococcus faecium E3548]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + G++ G V + G + ++S SH K P + ++VK
Sbjct: 204 GDVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAK-PSDVL------AVNDEVNVK 256
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 257 VLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG---- 311
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASEEE-- 369
Query: 272 VIPQGLEPY 280
P+ +E Y
Sbjct: 370 --PKNVESY 376
>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 401
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 306 -QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|304436633|ref|ZP_07396602.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370329|gb|EFM23985.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 376
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 77 ANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132
+N S S+ AD WK KE G E K+ GGL+ L GF+P QM
Sbjct: 80 GDNGGSLSKVEADKMAAWKDIEVIKEKGETVEAKVAKEVKGGLVAYVMGLRGFIPASQME 139
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----EKDAVWNKYS--SR 185
H K+ + + + ++I+ + + ++LV S E+D + + S
Sbjct: 140 -LHFVKDLSVYVDQT--------VEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSA 190
Query: 186 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVR 240
+ E I G DYGAFI + DGL H+S+++W ++ ++L G E+
Sbjct: 191 IEPEQIVRGTVKRLVDYGAFIDIGGVDGL------AHISDLAWHRVKHPSEVLEVGQELD 244
Query: 241 VKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
V V +DR+ RI+LS+K DP +E EK
Sbjct: 245 VYVKSVDRDAKRISLSVKDTLPDPWVEKAEK 275
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 135 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDI 191
H K P + + G + V V + + K++ S KD + W + + + D
Sbjct: 228 HRVKHPSEVLE------VGQELDVYVKSVDRDAKRISLSVKDTLPDPWVEKAEKYAEGDF 281
Query: 192 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G+ D+GAF+ + P GL+ + E++ I+ + ++ GD V VKV++I
Sbjct: 282 IEGKIIKLTDFGAFMEIE-P----GFDGLIPMGELAEKRIERADEAVHTGDVVVVKVLRI 336
Query: 247 DREKSRITLSIKQLEED 263
D ++ RI+LSI + + D
Sbjct: 337 DTKRKRISLSITKAKRD 353
>gi|407071818|ref|ZP_11102656.1| 30S ribosomal protein S1 [Vibrio cyclitrophicus ZF14]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 35/245 (14%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIY 103
P +F A ++ V+ LD D SR A W E
Sbjct: 49 PAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETV 108
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G I G GG V + FLP + + I + A L + KVI+
Sbjct: 109 VGIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVIKL 159
Query: 164 NEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYH 211
+++ +V S E+D + V+ I DYGAF+ L DGL H
Sbjct: 160 DQKRNNVVVSRRAVIESENSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLH 219
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 220 IT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWV-AIAK 272
Query: 272 VIPQG 276
P+G
Sbjct: 273 RYPEG 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW+ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNAAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIL 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D I+D IL+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL-----IEGVEGYIRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEE 262
K +E
Sbjct: 520 KAKDE 524
>gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janthinobacterium sp. Marseille]
gi|151280774|gb|ABR89184.1| small subunit ribosomal protein S1 [Janthinobacterium sp.
Marseille]
Length = 571
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ N + + + D + +++ A W + ESG I G + G
Sbjct: 70 GELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVVGTVNGKVK 129
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V + FLP + + K+ G + KVI+ + + +V
Sbjct: 130 GGLTVLTNGIRAFLP-GSLVDTRPVKDTTP--------FEGKTLEFKVIKLDRKRNNVVL 180
Query: 173 SEKDAV-------WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSE 220
S + + K + I G DYGAF+ L DGL H+T L
Sbjct: 181 SRRAVIEASMGEERQKLMETLKEGTIVTGVVKNITDYGAFVDLGGIDGLLHITDL----- 235
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPY 280
+W ++ ++L G E+ KV+K D+EK+R++L +KQL +DP L + PQG +
Sbjct: 236 -AWRRVRHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWT-GLSRRYPQGTRLF 293
Query: 281 LK 282
K
Sbjct: 294 GK 295
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V++ +EE +++ K W+
Sbjct: 314 GLVHVSEMDWTNKNVAPNKVVQ------LGDEVEVMVLEIDEERRRISLGMKQCKANPWD 367
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++ D G D+G FI L ++ GLVH+S++SW + ++
Sbjct: 368 DFAVTHKKGDKVRGAIKSITDFGVFIGL-----AGNIDGLVHLSDLSWTETGEEAVRRFK 422
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ ID E+ R++L +KQLE DP
Sbjct: 423 KGDELEAIVLAIDVERERVSLGVKQLEGDPF 453
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I G ++ G V + G L ++ + P + + G I+ K
Sbjct: 204 GTIVTGVVKNITDYGAFVDLGGIDGLLHITDLA-WRRVRHPSEVL------TVGQEITAK 256
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYG+F+ +
Sbjct: 257 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGSFVEVE-----QG 311
Query: 212 LTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 312 IEGLVHVSEMDW-TNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANP 365
>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
Length = 432
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + I GFN GG+ L GF+P + + HE
Sbjct: 237 WDKVKELEKQGKVVQVTISGFNRGGVTCDLEGLRGFIPRSHLQDGEN--------HEA-- 286
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V ++ N E +KLV SEK A + + V + G + YG F+ L
Sbjct: 287 -LVGKTLGVAFLEVNAETRKLVLSEKRAATAARFAELEVGQLVEGTVVAVKPYGFFVDL- 344
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ +R++ ++GD V+ + ++D + RI L+ LE P
Sbjct: 345 -----GGISGLLHQSMITGGSMRSLREVFDQGDAVKALITELDPGRGRIALNTALLEGQP 399
>gi|424866581|ref|ZP_18290414.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
gi|387222759|gb|EIJ77174.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
Length = 591
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 71 LDDSSDANNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFL 126
L++ D N S+ AD W A + EG+I GG+ V L FL
Sbjct: 97 LEEREDVNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFL 155
Query: 127 PFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSS 184
P Q+ + + ++ + L G I V++I+ N++ ++ S + + W
Sbjct: 156 PGSQID--------LRPVRDMDR-LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRK 206
Query: 185 RVNVEDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 234
+V ++ + G DYGAFI L DGL +H++++SW + + ++ +N
Sbjct: 207 KVTMDALKEGEILEGIVKNITDYGAFIDLGGIDGL------LHITDMSWGRVTNPQEFMN 260
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
GD+V V V+K D+E R++L +KQL DP
Sbjct: 261 VGDKVNVVVLKHDKETGRVSLGLKQLTPDP 290
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 89 DWKAAR------AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+W+ R A KE G I EG ++ G + + G L MS PQ+
Sbjct: 200 EWRDRRKKVTMDALKE-GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGR-VTNPQE 257
Query: 143 SIHEIAKGLTGSIISVKVIQANEE-------MKKLVFSEKDAVWNKY--SSRVNVEDIFV 193
++ G ++V V++ ++E +K+L V +Y +RVN + +
Sbjct: 258 FMN------VGDKVNVVVLKHDKETGRVSLGLKQLTPDPWTTVGTRYPEGTRVNARVVSI 311
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GL+HV+E+SW+ ++ I++ GD + V+V+KID + +
Sbjct: 312 -TDYGAFLEIE-----PGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRK 365
Query: 253 ITLSIKQLEEDP 264
I+L +KQL +P
Sbjct: 366 ISLGLKQLGPNP 377
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 26/213 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W G + GKI+ G V + G + MS + + P + +
Sbjct: 378 WDDVEGKYPVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKK-- 435
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS----RVNVEDIFVG-----RDYGA 199
G + V V++ +E ++L K + + S R V G D+G
Sbjct: 436 ----GQKVEVVVLKIEKERQRLSLGFKQVSEDPWDSDIPSRFPVGSFLDGVVTKVMDFGF 491
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I LS+K
Sbjct: 492 FVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGLSMKA 546
Query: 260 LEEDPLLETLEKVIPQ-----GLEPYLKSFYKK 287
+ D LE V Q +E LKS KK
Sbjct: 547 VSADSPLEAAPAVNAQPAPGNAMEEALKSARKK 579
>gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|333398562|ref|ZP_08480375.1| ribosomal protein S1 [Leuconostoc gelidum KCTC 3527]
gi|333446748|ref|ZP_08481690.1| ribosomal protein S1 [Leuconostoc inhae KCTC 3774]
gi|406600093|ref|YP_006745439.1| 30S ribosomal protein S1 [Leuconostoc gelidum JB7]
gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|406371628|gb|AFS40553.1| ribosomal protein S1 [Leuconostoc gelidum JB7]
Length = 397
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 113 GGLLVRFFSLVGFLPFPQMSP-------SHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL+V + GF+P ++ K+ + + EI I+S K + A E
Sbjct: 124 GGLIVDVNGVRGFVPASMVAERFVSDLNQFRNKDIKAQVIEIDPANARLILSRKAVAAQE 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+L +++K S VE V R D+GAF+ L DGL VHVSE+S
Sbjct: 184 RAAQLA-----EIFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL------VHVSEISH 231
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV----IPQGLEP 279
D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E E++ + +G
Sbjct: 232 DRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDEAAEQIAAGAVLEGTVK 291
Query: 280 YLKSF 284
+K F
Sbjct: 292 RVKDF 296
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G V + G + ++S K P + + G ++VK
Sbjct: 198 GEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDR-VKNPADVLTK------GDKVNVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
++ + E ++ S K W++ + ++ + G +D+GAF+ + L
Sbjct: 251 ILALDTEKGRISLSIKATQRGPWDEAAEQIAAGAVLEGTVKRVKDFGAFVEI-----LPG 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVS++S I++ ++L GD V+VKV+ I + RI+LS+K LEE P E
Sbjct: 306 IEGLVHVSQISNKRIENPSEVLKSGDTVQVKVLDIKPAEERISLSMKALEEKPQRE 361
>gi|88705966|ref|ZP_01103674.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
gi|88699680|gb|EAQ96791.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
Length = 557
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ + WK A + + +G I G GG V ++ FLP + +
Sbjct: 86 REKAKRAESWKDLEAAFAAEEVVKGVINGKVKGGFTVDVNTIRAFLPGSLVD----VRPV 141
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVE 189
+ + H L G + KVI+ +++ +V S E+DA+ +++
Sbjct: 142 RDTAH-----LEGKELDFKVIKLDQKRNNVVVSRRAVMEAANSVERDALLAGLQEGQSIK 196
Query: 190 DIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
+ DYGAF+ L DGL H+T +++W I+ +I+ G E+ VKV+K DR
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQELDVKVLKFDR 250
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQG 276
E++R++L +KQL EDP +E + P+G
Sbjct: 251 ERNRVSLGLKQLGEDPWVEITGR-YPEG 277
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVQ------LGDEVEVMVLDIDEERRRISLGIKQCQQNPWD 355
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S + D G D+G FI L ++ GLVH+S++SW+ + +R+
Sbjct: 356 AFASGASKGDRISGVIKSITDFGIFIGLE-----GNIDGLVHLSDISWNETGEEAVRN-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 410 KKGDEIETVILSVDPERERISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEERRRI 342
Query: 254 TLSIKQLEEDP 264
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
>gi|218710037|ref|YP_002417658.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
gi|218323056|emb|CAV19233.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 35/245 (14%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIY 103
P +F A ++ V+ LD D SR A W E
Sbjct: 49 PAEQFKNAAGELEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETV 108
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G I G GG V + FLP + + I + A L + KVI+
Sbjct: 109 VGIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVIKL 159
Query: 164 NEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYH 211
+++ +V S E+D + V+ I DYGAF+ L DGL H
Sbjct: 160 DQKRNNVVVSRRAVIESENSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLH 219
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 220 IT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWV-AIAK 272
Query: 272 VIPQG 276
P+G
Sbjct: 273 RYPEG 277
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW+ + +R+ +GDE+ V+ +D E+ RI+L +
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNAAGEEAVRE-YKKGDEISAVVLAVDAERERISLGV 433
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 434 KQMENDPF 441
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIL 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D I+D IL+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL-----IEGVEGYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEE 262
K +E
Sbjct: 520 KAKDE 524
>gi|335420693|ref|ZP_08551730.1| 30S ribosomal protein S1 [Salinisphaera shabanensis E1L3A]
gi|334894429|gb|EGM32625.1| 30S ribosomal protein S1 [Salinisphaera shabanensis E1L3A]
Length = 561
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 32/187 (17%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLT 152
AY+ S + G I G GG V ++ FLP + P L
Sbjct: 101 AYENSESVV-GHISGKVKGGYTVDVGNIRAFLPGSLVDVRPVRDTTY-----------LE 148
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAF 200
G + +VI+ + +V S +D + +YS R + D + G DYGAF
Sbjct: 149 GKPLEFRVIKLDRLRNNVVVSRRDVLKEEYSEERKQLLDTLQEGIVLKGIVKNLVDYGAF 208
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DGL +H++++SW I+D D++N G+E+ VKV+K DRE++R++L +KQL
Sbjct: 209 VDLGGIDGL------LHITDMSWKRIKDPTDVVNVGEEIEVKVLKFDRERTRVSLGLKQL 262
Query: 261 EEDPLLE 267
+DP ++
Sbjct: 263 GDDPWVD 269
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ES ++ G + G V V G + +M ++ P + +
Sbjct: 271 ARRYPESTRLF-GNVTNITDYGAFVEIEEGVEGLVHVSEMDWTNKNVNPGQIVD------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V++ +EE +++ K W +++ D G+ D+G F+ L
Sbjct: 324 VGDEVEVMVLEIDEERRRISLGMKQCKSNPWEDFAANHQRNDTVRGQIKSITDFGIFVGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW D +++ ++GDEV V+ ID ++ RI+L IKQL +
Sbjct: 384 --P---GNIDGLVHLSDLSWNDAGEEVVREYSKGDEVEAVVLSIDADRERISLGIKQLAQ 438
Query: 263 DPL 265
DP+
Sbjct: 439 DPI 441
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ G + S++S D ++D R L+EGD V + + +DR I+LSI+ +E
Sbjct: 474 VVGYIRASDISRDRVEDARTALSEGDAVEARFVGVDRRNRTISLSIRAKDE 524
>gi|167626886|ref|YP_001677386.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596887|gb|ABZ86885.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 561
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 115 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 165
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 166 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHI 225
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 226 T------DISWSRISHPTDVLSIGQEIYVKVIKFDKEKQRISLGIKQLGEDPWL 273
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 76 DANNRQ-----SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQ 130
DA+N + Q R++ W + G GKI+ G+ F L G +
Sbjct: 341 DADNHRISLGIKQCRANP-WNEFEKNYKPGDKVTGKIRSITEFGV---FIGLEGGIDGLV 396
Query: 131 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE- 189
+ P K+I E+ KG + ++ N +++++ S K + + + +N+
Sbjct: 397 HISDVAWDNPAKAIKELKKG---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHP 453
Query: 190 -------DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 242
++ +D GA + L D ++ G + +SE+S + +D+RD L+EG EV +
Sbjct: 454 KGSLVKGNVTKVQDNGAVVML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEAR 510
Query: 243 VIKIDREKSRITLSIKQLEED 263
+I ID +K I LSIK ++ED
Sbjct: 511 IINIDAKKRSIALSIKAVDED 531
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 359 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 413
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 414 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 445
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 180 EENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 238
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 239 VLS------IGQEIYVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 292
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 293 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 347
Query: 254 TLSIKQLEEDP 264
+L IKQ +P
Sbjct: 348 SLGIKQCRANP 358
>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 401
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKTIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+S+ + D+L G +V+VKV+ ID K RI+LSIKQ +
Sbjct: 306 -QGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQAD 354
>gi|410861852|ref|YP_006977086.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
gi|410819114|gb|AFV85731.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
Length = 556
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A + +AY + I +G I G GG V S+ FLP + +
Sbjct: 86 REKAKRHEAWVELEKAYDDKATI-KGVINGKVKGGFTVEVNSVRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVED---- 190
+ + H L G + KVI+ + + +V S + + + S+ N+E+
Sbjct: 141 VRDTTH-----LEGKELEFKVIKLDAKRNNVVVSRRAVIEAESSAERETLLANLEEGHEI 195
Query: 191 ---IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEKVIPQG 276
+EK R++L +KQ+ DP E + P+G
Sbjct: 250 KEKQRVSLGMKQMGNDPWQEIASR-YPEG 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G G++ G V V G + +M ++ P K ++
Sbjct: 267 WQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVN--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K + W ++ D G+ D+G F
Sbjct: 324 ---LGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
I L DG + GLVH+S++SW D ++D + +GDE+ V+++D E+ RI+L
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVDPERERISL 431
Query: 256 SIKQLEEDPL 265
+KQ+EEDP
Sbjct: 432 GVKQIEEDPF 441
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ SSA+ + A E G +G ++ G V + G L M+ K P +
Sbjct: 175 EAESSAERETLLANLEEGHEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ ++E +++ K + W + +SR G+
Sbjct: 234 IVN------VGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ R
Sbjct: 288 TDYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ +P
Sbjct: 342 ISLGLKQCIANP 353
>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 405
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 27/171 (15%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V + GF+P M H + + G+ + VK+I+ E +L+
Sbjct: 128 GGLVVNADGVRGFIP-ASMITDHFVSDLNQ--------YKGAELEVKIIEVVPEDNRLIL 178
Query: 173 S-----EKD--AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S EKD K + V DI G+ ++GAF+ L DGL VHVSE
Sbjct: 179 SHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVDLGGIDGL------VHVSE 232
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+S+D + DIL G++V+VKV+ I+ E++RI+LSIKQL+ P + EK
Sbjct: 233 ISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEK 283
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I EGK+ G V + G + ++S H K +I K G + VK
Sbjct: 202 GDIVEGKVARLTNFGAFVDLGGIDGLVHVSEISYDHVSKP-----SDILK--VGEDVKVK 254
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ E ++ S K W+ + V I G D+GAF+ + L
Sbjct: 255 VLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGTVKRLVDFGAFVEV-----LPG 309
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I D+L G++++VKV+ ID E+ R+ LS+K LEE P
Sbjct: 310 VEGLVHISQISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKALEEAP 362
>gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
Length = 400
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 90 WKAARAYKE------SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS 143
K AYKE G EG + G GGLLV + GFLP +S +
Sbjct: 96 LKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDVGTR-GFLPASLISNRYVSD----- 149
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR- 195
K G +++K+ + + +L+ S KD + + +S++ V D G+
Sbjct: 150 ----LKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKV 205
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
+GAF+ + DGL VH+SE+S+ I D+L G +V+VKVI ID +K
Sbjct: 206 SRLTGFGAFVDVGGVDGL------VHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDKH 259
Query: 252 RITLSIKQLEEDPLLETLE 270
RI+LSIKQ P E E
Sbjct: 260 RISLSIKQTLPSPFEEATE 278
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G EGK+ G G V + G + ++S H K P + G + VK
Sbjct: 198 GDTVEGKVSRLTGFGAFVDVGGVDGLVHISEISYKHIDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI +++ ++ S K + + + + ++ DI G +GAFI + DG+
Sbjct: 251 VIGIDDDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEV--ADGIQ- 307
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE++ + D+L G V+VKV+ +D RI+LSIKQ +
Sbjct: 308 --GLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQAD 355
>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
Length = 550
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
WK + E G + F G V + + G L ++S + + K P++ +
Sbjct: 272 WKEIKDQLEVGDTITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELL---- 327
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAF 200
G I+V+VI+ N E K+L S K+ ++ VN V D+ G+ D+GAF
Sbjct: 328 --TIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAF 385
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+++ DGL +H E SW+ + + +GDEV V++IKID+EK I+LSIK +
Sbjct: 386 VNIGDVDGL------LHNEEASWESNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIKDI 439
Query: 261 EEDP 264
+ P
Sbjct: 440 SDSP 443
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 28/183 (15%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHSCKEPQKSIHEIAKGLTGSIIS 157
G + +GKI G V + G L + S + CK K G +
Sbjct: 369 GDVIKGKIATLTDFGAFVNIGDVDGLLHNEEASWESNAKCKSLFKK---------GDEVE 419
Query: 158 VKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
V++I+ ++E + + S KD + ++ + DI G +D+G FI L
Sbjct: 420 VRIIKIDKEKENISLSIKDISDSPAKRFQDAYKLGDIVKGPVKDIKDFGIFIKLE----- 474
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+L GL+ + D D + GDE+ +I ID +K+R+ LS+++LE+ E L
Sbjct: 475 NNLDGLIR----NEDFGPLKADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREVL 530
Query: 270 EKV 272
+ V
Sbjct: 531 KSV 533
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 148 AKGLTGSIISVKVIQANEEM-------KKLVFSEKDAVWNKYSSRVNVEDIFVGR----- 195
+G G + KVI+ N+ KKL+ K+ NK + + ++ G
Sbjct: 149 TQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKNIKDNKVAEILEKKEAINGTIKKIT 208
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLAYDKAKQHLSL 262
Query: 256 SIKQLEEDPLLE 267
SIK +P E
Sbjct: 263 SIKAALSNPWKE 274
>gi|347540980|ref|YP_004848406.1| 30S ribosomal protein S1 [Pseudogulbenkiania sp. NH8B]
gi|345644159|dbj|BAK77992.1| ribosomal protein S1 [Pseudogulbenkiania sp. NH8B]
Length = 562
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 33/268 (12%)
Query: 31 SSLVCVNPLIIERICQRNLCPVGKFSTNAAKI-------TPTTVNPILDDSSDANNRQSQ 83
S+ V VN + +L PV +F ++ I ++ + + + + +
Sbjct: 32 SNFVTVNA----GLKSESLIPVEEFKADSGVIEVAIGDFVTVAIDALENGFGETKLSREK 87
Query: 84 SRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMSPSH 135
++ A W E+G I G I G GGL V R F SLV P +P +
Sbjct: 88 AKRLAAWIELEEALEAGTIMSGLISGKVKGGLTVMVNGIRAFLPGSLVDVRPVKDTTP-Y 146
Query: 136 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
K+ + + ++ + ++S + + +++ + E+ A+ V+ I
Sbjct: 147 EGKQVEFKVIKLDRKRNNVVVSRRAV-----LEETLGEERKALLETLCEGAVVKGIVKNI 201
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+EK+R++
Sbjct: 202 TDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVS 255
Query: 255 LSIKQLEEDPLLETLEKVIPQGLEPYLK 282
L +KQL +DP + L + P G + K
Sbjct: 256 LGLKQLGDDPWV-GLSRRYPSGTRLFGK 282
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E+ +++ K + W+
Sbjct: 301 GLVHVSEMDWTNKNVHPSKVVQ------VGDEVEVMILEIDEDRRRISLGMKQCLANPWD 354
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+++ D VG D+G F+ L P G+ GLVH+S++SW + +D
Sbjct: 355 DFAATYKKGDKLVGAIKSITDFGVFVGL--PGGI---DGLVHLSDLSWSETGEDAVRKFK 409
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV V+ ID EK RI+L IKQLE DP
Sbjct: 410 KGDEVEAVVLSIDVEKERISLGIKQLEGDPF 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G ++ G V + G L ++ K P + + G + K
Sbjct: 191 GAVVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLA------VGDEVEAK 243
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 244 VLKFDQEKNRVSLGLKQLGDDPWVGLSRRYPSGTRLFGKVTNLTDYGAFVEIE-----QG 298
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ +P
Sbjct: 299 IEGLVHVSEMDW-TNKNVHPSKVVQVGDEVEVMILEIDEDRRRISLGMKQCLANP 352
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG + G + SEVS D ++DIR L EGDEV +I +DR+ I+LSI
Sbjct: 464 GAVIQL---DG--DVEGYLRASEVSRDRVEDIRTHLKEGDEVEAVIIAVDRKSRNISLSI 518
Query: 258 K 258
K
Sbjct: 519 K 519
>gi|347542383|ref|YP_004857019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985418|dbj|BAK81093.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 850
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 29/166 (17%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK--KL 170
GG++V F S+ F+P + H ++++E G + VKVI+ EE K+
Sbjct: 617 GGVIVEFNSIKLFVPASHLDFIHI-----ENLNE----FVGRELEVKVIEMKEEKNQFKI 667
Query: 171 VFSEKDAVWNKYSSRVN----------VEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHV 218
+ S + + + R N V D V R +GAF+ + DGL +H+
Sbjct: 668 IGSRRAVLEEEKKIRENEIWKSLVLGDVVDCEVKRINTFGAFVDVNGVDGL------LHI 721
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
SE+SW I + D+LN GD+++VK+I +DRE +++LS+K L++DP
Sbjct: 722 SEISWGRIDKVSDVLNIGDKIKVKIIDLDRENRKLSLSMKVLQDDP 767
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 26/190 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ + R + WK+ G + + +++ N G V + G L ++S
Sbjct: 678 EKKIRENEIWKSLVL----GDVVDCEVKRINTFGAFVDVNGVDGLLHISEISWGR----- 728
Query: 141 QKSIHEIAKGLT-GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR- 195
I +++ L G I VK+I + E +KL S K D W+ + + + +G+
Sbjct: 729 ---IDKVSDVLNIGDKIKVKIIDLDRENRKLSLSMKVLQDDPWSNVDEKYPIGAVVLGKV 785
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
++GAF+ L P + GLVH+S++S + DI D L G EV+ K+++I++E
Sbjct: 786 VRFAEFGAFVELE-P----SIDGLVHISQISHKRVNDISDFLQIGQEVKAKIVEINKENK 840
Query: 252 RITLSIKQLE 261
RI LSIK +E
Sbjct: 841 RIELSIKVIE 850
>gi|224826389|ref|ZP_03699491.1| ribosomal protein S1 [Pseudogulbenkiania ferrooxidans 2002]
gi|224601490|gb|EEG07671.1| ribosomal protein S1 [Pseudogulbenkiania ferrooxidans 2002]
Length = 567
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 33/268 (12%)
Query: 31 SSLVCVNPLIIERICQRNLCPVGKFSTNAAKI-------TPTTVNPILDDSSDANNRQSQ 83
S+ V VN + +L PV +F ++ I ++ + + + + +
Sbjct: 37 SNFVTVNA----GLKSESLIPVEEFKADSGVIEVAIGDFVTVAIDALENGFGETKLSREK 92
Query: 84 SRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMSPSH 135
++ A W E+G I G I G GGL V R F SLV P +P +
Sbjct: 93 AKRLAAWIELEEALEAGTIMSGLISGKVKGGLTVMVNGIRAFLPGSLVDVRPVKDTTP-Y 151
Query: 136 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG- 194
K+ + + ++ + ++S + + +++ + E+ A+ V+ I
Sbjct: 152 EGKQVEFKVIKLDRKRNNVVVSRRAV-----LEETLGEERKALLETLCEGAVVKGIVKNI 206
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+EK+R++
Sbjct: 207 TDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVS 260
Query: 255 LSIKQLEEDPLLETLEKVIPQGLEPYLK 282
L +KQL +DP + L + P G + K
Sbjct: 261 LGLKQLGDDPWV-GLSRRYPSGTRLFGK 287
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E+ +++ K + W+
Sbjct: 306 GLVHVSEMDWTNKNVHPSKVVQ------VGDEVEVMILEIDEDRRRISLGMKQCLANPWD 359
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+++ D VG D+G F+ L P G+ GLVH+S++SW + +D
Sbjct: 360 DFAATYKKGDKLVGAIKSITDFGVFVGL--PGGI---DGLVHLSDLSWSETGEDAVRKFK 414
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV V+ ID EK RI+L IKQLE DP
Sbjct: 415 KGDEVEAVVLSIDVEKERISLGIKQLEGDPF 445
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + +G ++ G V + G L ++ K P + + G + K
Sbjct: 196 GAVVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLA------VGDEVEAK 248
Query: 160 VIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 249 VLKFDQEKNRVSLGLKQLGDDPWVGLSRRYPSGTRLFGKVTNLTDYGAFVEIE-----QG 303
Query: 212 LTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI+L +KQ +P
Sbjct: 304 IEGLVHVSEMDW-TNKNVHPSKVVQVGDEVEVMILEIDEDRRRISLGMKQCLANP 357
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L DG + G + SEVS D ++DIR L EGDEV +I +DR+ I+LSI
Sbjct: 469 GAVIQL---DG--DVEGYLRASEVSRDRVEDIRTHLKEGDEVEAVIIAVDRKSRNISLSI 523
Query: 258 K 258
K
Sbjct: 524 K 524
>gi|78048052|ref|YP_364227.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036482|emb|CAJ24173.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEINVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|417837661|ref|ZP_12483899.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
gi|338761204|gb|EGP12473.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
Length = 400
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 90 WKAARAYKE------SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS 143
K AYKE G EG + G GGLLV + GFLP +S +
Sbjct: 96 LKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDVGTR-GFLPASLISNRYVSD----- 149
Query: 144 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR- 195
K G +++K+ + + +L+ S KD + + +S++ V D G+
Sbjct: 150 ----LKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKV 205
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
+GAF+ + DGL VH+SE+S+ I D+L G +V+VKVI ID +K
Sbjct: 206 SRLTGFGAFVDVGGVDGL------VHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDKH 259
Query: 252 RITLSIKQLEEDPLLETLE 270
RI+LSIKQ P E E
Sbjct: 260 RISLSIKQTLPSPFEEATE 278
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G EGK+ G G V + G + ++S H K P + G + VK
Sbjct: 198 GDTVEGKVSRLTGFGAFVDVGGVDGLVHISEISYKHIDK-PSDVLK------AGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI +++ ++ S K + + + + ++ DI G +GAFI + DG+
Sbjct: 251 VIGIDDDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEV--ADGIQ- 307
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE++ + D+L G V+VKV+ +D RI+LSIKQ +
Sbjct: 308 --GLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQAD 355
>gi|442611143|ref|ZP_21025849.1| SSU ribosomal protein S1p [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441747071|emb|CCQ11911.1| SSU ribosomal protein S1p [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 555
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKITPTT---VNPILDDSSDAN-----NRQSQSRSSADWKAARAYKESGF 101
PV +F A +I V+ LD D +R+ R A + +A +E
Sbjct: 48 IPVEQFKNAAGEIEVAVGDEVDVALDAIEDGFGETILSREKAKRHEAWIRLEKACEEQET 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V ++ FLP + + + + H L G + KVI
Sbjct: 108 VI-GVINGKVKGGFTVEVDTIRAFLPGSLVD----VRPVRDTAH-----LEGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S + ++++ G+ DYGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQERDELLQNLVEGQEVKGIVKNLTDYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L +KQL EDP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDKDKTRVSLGLKQLGEDP 266
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WAAIAGRYPEGAKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVS--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K W +++ + N D G+ D+G F
Sbjct: 324 ---LGDSVEVMVLEIDEERRRISLGLKQCKPNPWQEFARQFNKGDQVTGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +K
Sbjct: 381 IGLE-----GGIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERERISLGVK 434
Query: 259 QLEEDPL 265
Q+E DP
Sbjct: 435 QIEADPF 441
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRRI 342
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 343 SLGLKQCKPNPWQE 356
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLET 268
+ G + V++++ + ++D +++ GDE+ K + +DR+ I+LS+K + EE +LE
Sbjct: 474 VEGYIRVADIAQERVEDATTVVSAGDEIEAKFMGVDRKNRAISLSVKAMFEAEEKEVLEK 533
Query: 269 LEKVIPQGLEPYLKSFYK 286
L+K P+ E + + +K
Sbjct: 534 LKKEEPE-FENAMAAAFK 550
>gi|260898312|ref|ZP_05906808.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
gi|308089134|gb|EFO38829.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
Length = 406
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 54 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 107
Query: 256 SIKQLEEDPLLETLEKVIPQG 276
+KQL EDP + + K P+G
Sbjct: 108 GLKQLGEDPWV-AIAKRYPEG 127
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 117 WVAIAKRYPE-GHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 173
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V++ +EE +++ K N + S + D G+ D+G
Sbjct: 174 ----VGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGI 229
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+ RI+L I
Sbjct: 230 FIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAERERISLGI 283
Query: 258 KQLEEDPL 265
KQ+E DP
Sbjct: 284 KQMENDPF 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 40 QEGSEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIQ 92
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 93 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE----- 147
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ + +P
Sbjct: 148 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANP 203
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E +
Sbjct: 324 VEGYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMAS 383
Query: 272 VIPQ 275
+ Q
Sbjct: 384 INKQ 387
>gi|257094467|ref|YP_003168108.1| 30S ribosomal protein S1 [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257046991|gb|ACV36179.1| ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 566
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCK 138
+ +++ A W A G + G I G GGL V S+ FLP M P
Sbjct: 92 RDRAKRVAAWNALEQALNDGSLVVGTITGKVKGGLTVMTNSVRAFLPGSLVDMRPVKDTT 151
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ +E KVI+ + + +V S E+DA+
Sbjct: 152 PYEGKTYEF-----------KVIKLDRKRNNVVVSRRAVLEASVGEERDALLAALKEGSI 200
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ + DYGAF+ L DGL H+T L +W ++ ++L GDEV+ K++K
Sbjct: 201 VKGVVKNITDYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLAVGDEVQAKILKF 254
Query: 247 DREKSRITLSIKQLEEDP 264
D+EK+R++L +KQL EDP
Sbjct: 255 DQEKNRVSLGLKQLGEDP 272
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + G + +M ++ P K + G + V +++
Sbjct: 288 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEI 341
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGL 215
+E+ +++ K W+ +S D G D+G FI L P G+ GL
Sbjct: 342 DEDRRRISLGMKQCAANPWDDFSMNYKKGDRVRGAIKSITDFGVFIGL--PGGI---DGL 396
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
VH+S++SW L + IR+ +GDEV V+ ID +K RI+L IKQL+ DP
Sbjct: 397 VHLSDLSWSLPGEEAIRN-FKKGDEVDAVVLAIDTDKERISLGIKQLDGDP 446
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA + L DG + + SEVS D I D+ + EGD++ +I IDR+ I+LSI
Sbjct: 471 GAVVML---DG--DIEAYLRASEVSRDRIDDLTRVYKEGDQIEAMIINIDRKTRSISLSI 525
Query: 258 KQLEEDPLLETLEK 271
K E+ E ++K
Sbjct: 526 KAREQAEQQEAMQK 539
>gi|384173360|ref|YP_005554737.1| 30S ribosomal protein S1 [Arcobacter sp. L]
gi|345472970|dbj|BAK74420.1| 30S ribosomal protein S1 [Arcobacter sp. L]
Length = 550
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + E G + F G V + + G L ++S + + K P++ +
Sbjct: 272 WEEIKDELEVGDTITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELL---- 327
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAF 200
G I+V+VI+ N E K+L S K + + K+++ V D+ G+ D+GAF
Sbjct: 328 --TIGEEINVEVIELNVEQKRLRVSLKNLQEKPFTKFTNEHKVGDVIKGKIATLTDFGAF 385
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ + + GL+H E SW+ + I +GDEV VK+IKID+EK I+LS+K++
Sbjct: 386 VSIG------EVDGLLHNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENISLSVKEI 439
Query: 261 EEDP 264
+ P
Sbjct: 440 ADSP 443
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHSCKEPQKSIHEIAKGLTGSIIS 157
G + +GKI G V + G L + S P+ CK K G +
Sbjct: 369 GDVIKGKIATLTDFGAFVSIGEVDGLLHNEEASWEPNAKCKTIFKK---------GDEVE 419
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
VK+I+ ++E + + S K D+ ++ + DI G +D+G FI L
Sbjct: 420 VKIIKIDKEKENISLSVKEIADSPAKRFQDTYKIGDIVKGTVKDTKDFGIFIKLE----- 474
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+L GL+ + DI++ GDEV ++ ID +K+R+ LS+K+LE+ E L
Sbjct: 475 NNLDGLIRNEDFGPLNPDDIKN----GDEVEAVIVNIDTKKNRVRLSVKRLEQQQEREVL 530
Query: 270 EKV 272
+ V
Sbjct: 531 KSV 533
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-VEDIFVGRD---------- 196
A+G G + KVI+ N+ ++ S K + + + N V +I ++
Sbjct: 149 AQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKAVKDNKVSEILENKEPVNGIIKKIT 208
Query: 197 -YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLSYDKAKQHLSL 262
Query: 256 SIKQLEEDPLLE 267
SIK +P E
Sbjct: 263 SIKAALSNPWEE 274
>gi|34498501|ref|NP_902716.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
gi|34104356|gb|AAQ60715.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
Length = 563
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLV-----RFF---SLVGFLPFPQMS 132
+ +++ A W E+G I G I G GGL V R F SLV P +
Sbjct: 90 REKAKRMAAWVELEEALEAGTILSGMISGKVKGGLTVMVNGIRAFLPGSLVDVRPVKDTT 149
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVI---QANEEMKKLVFSEKDAVWNKYSSRVNVE 189
P + K+ + + ++ + ++S + + EE K L+ + K+ K V+
Sbjct: 150 P-YENKQIEFKVIKLDRKRNNVVVSRRSVLEETLGEERKALLETLKEGAVIKGI----VK 204
Query: 190 DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
+I DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+E
Sbjct: 205 NI---TDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQE 255
Query: 250 KSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
K+R++L +KQL EDP + L + P G + K
Sbjct: 256 KNRVSLGLKQLGEDPWV-GLSRRYPSGTRLFGK 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E+ +++ K + WN
Sbjct: 306 GLVHVSEMDWTNKNVHPSKVVQ------VGDEVEVMILEIDEDRRRISLGMKQCLANPWN 359
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
+++ + D G D+G F+ L P G+ GLVH+S++SW+ + +R
Sbjct: 360 EFADNFHKGDKLKGAIKSITDFGVFVGL--PGGI---DGLVHLSDLSWNEAGEEAVRK-F 413
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV V+ ID EK RI+L IKQLE DP
Sbjct: 414 KKGDEVEAVVLSIDVEKERISLGIKQLEGDPF 445
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI
Sbjct: 293 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQVGDEVEVMILEIDEDRRRI 346
Query: 254 TLSIKQLEEDP 264
+L +KQ +P
Sbjct: 347 SLGMKQCLANP 357
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G + SE+S D ++D R +L +GD V ++ +DR+ I+LSIK
Sbjct: 478 VEGYLRASELSRDRVEDARSVLKDGDAVEAVIVAVDRKSRNISLSIK 524
>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 401
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EGK+ GGLLV + GFLP +S + + ++ K G I
Sbjct: 109 EEGKTIEGKVTSSVRGGLLVDVGTR-GFLPASLIS--------NRFVSDL-KPYIGKAIK 158
Query: 158 VKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F+ +
Sbjct: 159 VKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGG 218
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 219 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 272
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG++ G V + G + ++S H K P + G + VK
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 249
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + +S +N D+ G ++GAF+ + DG+
Sbjct: 250 VIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV--ADGI-- 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
GLVHVSE+S+ + D+L G +V+VKV+ ID K RI+LSIKQ +
Sbjct: 306 -QGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQAD 354
>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
Length = 550
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
WK + E G + F G V + + G L ++S + + K P++ +
Sbjct: 272 WKEIKDQLEVGDTITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELL---- 327
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAF 200
G I+V+VI+ N E K+L S K+ ++ VN V D+ G+ D+GAF
Sbjct: 328 --TIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAF 385
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+++ DGL +H E SW+ + + +GDEV V++IKID+EK I+LSIK +
Sbjct: 386 VNIGDVDGL------LHNEEASWESNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKDI 439
Query: 261 EEDP 264
+ P
Sbjct: 440 SDSP 443
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 28/183 (15%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS--PSHSCKEPQKSIHEIAKGLTGSIIS 157
G + +GKI G V + G L + S + CK K G +
Sbjct: 369 GDVIKGKIATLTDFGAFVNIGDVDGLLHNEEASWESNAKCKTLFKK---------GDEVE 419
Query: 158 VKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 209
V++I+ ++E + + S KD + ++ + DI G +D+G FI L
Sbjct: 420 VRIIKIDKEKENISLSIKDISDSPAKRFQDAYKLGDIVKGPVKDIKDFGIFIKLE----- 474
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
+L GL+ + D D + GDE+ +I ID +K+R+ LS+++LE+ E L
Sbjct: 475 NNLDGLIR----NEDFGPLKADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREVL 530
Query: 270 EKV 272
+ V
Sbjct: 531 KSV 533
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 148 AKGLTGSIISVKVIQANEEM-------KKLVFSEKDAVWNKYSSRVNVEDIFVGR----- 195
+G G + KVI+ N+ KKL+ K+ NK + + ++ G
Sbjct: 149 TQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKNIKDNKVAEILEKKEAINGTIKKIT 208
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLAYDKAKQHLSL 262
Query: 256 SIKQLEEDPLLE 267
SIK +P E
Sbjct: 263 SIKAALSNPWKE 274
>gi|325983541|ref|YP_004295943.1| 30S ribosomal protein S1 [Nitrosomonas sp. AL212]
gi|325533060|gb|ADZ27781.1| ribosomal protein S1 [Nitrosomonas sp. AL212]
Length = 570
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLL-----VRFF---SLVGFLPFPQM 131
R R +A W ESG I G + G GGL +R F SLV P
Sbjct: 96 RDKAKRLTA-WHDLEQAMESGKIVTGMVNGKVKGGLTAMINGIRAFLPGSLVDIRPVKDT 154
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
+P + KE + + ++ + ++S + + ++ ++++ + + V+ +
Sbjct: 155 TP-YENKEMEFKVIKLDRKRNNVVVSRRAV-----LEATQGADRETLLSNLQEGAVVQGV 208
Query: 192 FVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250
DYGAF+ L DGL H+T L +W ++ +++N GDEV KV+K D+EK
Sbjct: 209 VKNITDYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVVNIGDEVTAKVLKFDQEK 262
Query: 251 SRITLSIKQLEEDP 264
+R++L +KQL EDP
Sbjct: 263 NRVSLGMKQLSEDP 276
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ AD + + + G + +G ++ G V + G L ++ K P +
Sbjct: 185 EATQGADRETLLSNLQEGAVVQGVVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSE 243
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G ++ KV++ ++E ++ K + W S R G+
Sbjct: 244 VVN------IGDEVTAKVLKFDQEKNRVSLGMKQLSEDPWVGLSRRYPARTRLFGKVTNL 297
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSR 252
DYGAFI + + GLVHVSE+ W +++ I+ GDEV V +++ID E+ R
Sbjct: 298 TDYGAFIEIE-----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEERRR 351
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 352 ISLGMKQCQTNPWEE 366
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G + V +++ +EE +++ K W ++++ + G+ D+G FI L
Sbjct: 335 GDEVEVMILEIDEERRRISLGMKQCQTNPWEEFAATHDKNAKVRGQIKSITDFGVFIGL- 393
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW+ + +LN +GDEV ++ ID E+ RI+L IKQ+E
Sbjct: 394 -PG---NIDGLVHLSDLSWNQPGE-EAVLNYKKGDEVEAMILSIDVERERISLGIKQMEG 448
Query: 263 DPL 265
DP
Sbjct: 449 DPF 451
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D ++DIR L EGD + +I +DR+ I LSI
Sbjct: 475 GAVIAL-----THDIEGYLRASEVSRDRVEDIRTFLKEGDTIETMIINVDRKNRTINLSI 529
Query: 258 KQLEEDPLLETLEKV 272
K ++ ++K+
Sbjct: 530 KAKDKSDESSAMQKI 544
>gi|58581803|ref|YP_200819.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623707|ref|YP_451079.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188576640|ref|YP_001913569.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426397|gb|AAW75434.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367647|dbj|BAE68805.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521092|gb|ACD59037.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E+
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEDALENNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 24/190 (12%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ Q R + W A ++S ++E + N GG + L FLP ++ +
Sbjct: 93 RRIQYREA--WDKVIAKQDSDEVFEAECVSVNRGGAIFLVEGLRAFLPGSHLT----GRL 146
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG----- 194
P L G + +K ++ N+E KLV S + AV + + ++ D+ G
Sbjct: 147 PDDD-------LVGQTLPLKFLEVNQEDNKLVVSNRRAVVEEQMAELSRGDVIDGIVKAL 199
Query: 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+ YGAF+ + ++GL+H+S++S D I D+ +L G +++ +I D+ RI
Sbjct: 200 KPYGAFVEVG------GMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVNGRIA 253
Query: 255 LSIKQLEEDP 264
LS K LE +P
Sbjct: 254 LSTKTLEPEP 263
>gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, Nbp1 [Synechococcus sp. WH
8102]
gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
sp. WH 8102]
Length = 406
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + ++ G + + + GFN GG+ L GF+P Q+ + +E
Sbjct: 211 WDKVKELEKHGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQEGDNHQE---------- 260
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + V I+ N E +KLV S+K A + V + G + YG FI L
Sbjct: 261 -LVGKTLGVAFIEVNSETRKLVLSQKRAAVAARFQELEVGQLVEGVVAAVKPYGLFIDL- 318
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H S ++ ++ IR++ ++GD V+ + ++D + RI L+ LE P
Sbjct: 319 -----GGISGLLHQSSITNGSLRSIREVFDQGDRVQALITELDPGRGRIGLNTALLEGPP 373
>gi|21231633|ref|NP_637550.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768245|ref|YP_243007.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991381|ref|YP_001903391.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. B100]
gi|384428096|ref|YP_005637455.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. raphani 756C]
gi|21113326|gb|AAM41474.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573577|gb|AAY48987.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733141|emb|CAP51339.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris]
gi|341937198|gb|AEL07337.1| ribosomal protein S1 [Xanthomonas campestris pv. raphani 756C]
Length = 559
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|254282959|ref|ZP_04957927.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
gi|219679162|gb|EED35511.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
Length = 557
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A WK A + + G I G GG V S+ FLP +
Sbjct: 85 SREKAKRAEA-WKRLEAAHAADEVVTGIINGKVKGGFTVDIDSIRAFLPGSLIDV----- 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ I E A L + KVI+ +++ +V S E++ + +
Sbjct: 139 ---RPIRETAH-LENKDLEFKVIKLDQKRNNVVVSRRAVMEAANSAEREELLESLQEGMA 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ + DYGAF+ L DGL H+T +++W I+ +I+ G E+ VK++K
Sbjct: 195 VKGVVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQELDVKILKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP +E + P+G
Sbjct: 249 DRERNRVSLGLKQLGEDPWVEITNR-YPEG 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W+
Sbjct: 302 GLVHVSEMDWTNKNVHPSKIVQ------LGDEVEVMVLDIDEERRRISLGIKQCTQNPWD 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDIL 233
++S + D G D+G FI L ++ GLVH+S++SW+ + + +R+
Sbjct: 356 AFASEHSKGDRISGTIKSITDFGIFIGLE-----GNIDGLVHLSDISWNEVGEEAVRN-Y 409
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ ID E+ RI+L +KQLEED
Sbjct: 410 KKGDEIETVILSIDPERERISLGVKQLEEDAF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G +
Sbjct: 190 QEGMAVKGVVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSEIVE------VGQELD 242
Query: 158 VKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDG 208
VK+++ + E ++ K + N+Y SRV + DYG F +
Sbjct: 243 VKILKFDRERNRVSLGLKQLGEDPWVEITNRYPEGSRVKAR-VTNLTDYGCFAEIE---- 297
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI+L IKQ ++P
Sbjct: 298 -EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEERRRISLGIKQCTQNP 353
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + G + VS+++ + ++D R +LN GD V K+I +DR+ + LSI
Sbjct: 465 GALIKLS-----DEVDGYLKVSDLARERVEDARSVLNVGDSVEAKIISVDRKTRALGLSI 519
Query: 258 KQLEEDPLLETLEKVIPQ 275
K + D E ++ + Q
Sbjct: 520 KAKDMDDEKEAVQSLKQQ 537
>gi|21243033|ref|NP_642615.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
306]
gi|289665787|ref|ZP_06487368.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289671206|ref|ZP_06492281.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. musacearum
NCPPB 4381]
gi|294624737|ref|ZP_06703403.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294664331|ref|ZP_06729696.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325925941|ref|ZP_08187309.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
gi|346725198|ref|YP_004851867.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citrumelo F1]
gi|381173193|ref|ZP_09882298.1| ribosomal protein S1 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|390989629|ref|ZP_10259925.1| ribosomal protein S1 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418516565|ref|ZP_13082738.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418522541|ref|ZP_13088575.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|21108543|gb|AAM37151.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
306]
gi|292600971|gb|EFF45042.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605897|gb|EFF49183.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325543664|gb|EGD15079.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
gi|346649945|gb|AEO42569.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citrumelo F1]
gi|372555690|emb|CCF66900.1| ribosomal protein S1 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380686354|emb|CCG38785.1| ribosomal protein S1 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|410701013|gb|EKQ59546.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706844|gb|EKQ65301.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|340354820|ref|ZP_08677518.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
gi|339623072|gb|EGQ27581.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
Length = 406
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 30/205 (14%)
Query: 66 TVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGF 125
+ + DD+ + RQ + ++ W + + E+G I E +++ GGL+V + GF
Sbjct: 94 AITKVEDDAYVLSKRQVDAENA--WDSLKEQFENGEIIETEVKDVVKGGLVVDL-GVRGF 150
Query: 126 LPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-- 183
+P + H E + G ++ K+++ ++E +L+ S + V +
Sbjct: 151 IP-ASLVEDHFV--------ESFEDYKGRTMTFKIVEMDQEKNRLILSHRAVVQEQNDKK 201
Query: 184 -----SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
S + D+ G +GAF+ + DGL VH+S++S I+ + D+L
Sbjct: 202 KEEALSSIQEGDVLDGTVQRIASFGAFVDIGGVDGL------VHISQISHGHIESVSDVL 255
Query: 234 NEGDEVRVKVIKIDREKSRITLSIK 258
EGDE++V+V+ +DR+ R++LSIK
Sbjct: 256 KEGDEIKVRVLSVDRDAERVSLSIK 280
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 23/204 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
Q ++ + A + + G + +G +Q G V + G + Q+S H +
Sbjct: 195 QEQNDKKKEEALSSIQEGDVLDGTVQRIASFGAFVDIGGVDGLVHISQISHGHI-----E 249
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
S+ ++ K G I V+V+ + + +++ S KD + W + + + + G
Sbjct: 250 SVSDVLK--EGDEIKVRVLSVDRDAERVSLSIKDTLPGPWENVAEKAPIGSVLEGTVKRL 307
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
YGAF+ + FP + GLVH+S ++ I ++L EG V+VKV+ ++ E+ RI+
Sbjct: 308 VAYGAFVEI-FPG----VEGLVHISRIAHTHIGTPHEVLEEGQTVQVKVLDVNPEEKRIS 362
Query: 255 LSIKQL---EEDPLLETLEKVIPQ 275
LSIK L E+DP E +P+
Sbjct: 363 LSIKDLLEKEDDPREENFSYEMPE 386
>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
Length = 416
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 91 KAARAYKE------SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSI 144
+A RA++E +G I E + GGL+V + GF+P + + +
Sbjct: 98 EARRAWEEIASKFNAGDIVEAPVTQVVKGGLVVDVAGVRGFVPASMIE--------NRFV 149
Query: 145 HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVE----DIFVGR-- 195
++ + G I K+I+ + +L+ S +D + + S SR+ E D+ G+
Sbjct: 150 QDLNQ-YKGQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVA 208
Query: 196 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
++GAFI L DGL VHVSE+S D + D+L GD+V+VK++ +D EK R
Sbjct: 209 RMTNFGAFIDLGGVDGL------VHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKER 262
Query: 253 ITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMV 289
I+LSIK + P E P+G L+ K++V
Sbjct: 263 ISLSIKATQPGPWEAAAENA-PEGT--VLEGTVKRVV 296
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 61 KITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKE--SGFIYEGKIQGFNGGGLLVR 118
+I PT IL N +S++ S R + E G + EGK+ G +
Sbjct: 166 EIDPTESRLILSRRDVLNEERSEALS-------RIFNELAEGDVVEGKVARMTNFGAFID 218
Query: 119 FFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-- 176
+ G + ++S +P + G + VK++ + E +++ S K
Sbjct: 219 LGGVDGLVHVSEISHDR-VSQPSDVLA------VGDDVKVKILGLDPEKERISLSIKATQ 271
Query: 177 -AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR 230
W + + G D+GAF+ + FP + GLVHVS+++ + +
Sbjct: 272 PGPWEAAAENAPEGTVLEGTVKRVVDFGAFVEV-FP----GVEGLVHVSQIAHKHVNNPA 326
Query: 231 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
D+L GD+V VKV++++ +K R++LSIK LEE P
Sbjct: 327 DVLTAGDKVNVKVLEVNPDKQRLSLSIKALEEAP 360
>gi|256822123|ref|YP_003146086.1| 30S ribosomal protein S1 [Kangiella koreensis DSM 16069]
gi|256795662|gb|ACV26318.1| ribosomal protein S1 [Kangiella koreensis DSM 16069]
Length = 555
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 31/261 (11%)
Query: 31 SSLVCVNP-LIIERICQRN--LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSS 87
+ +V VN L E + RN L G+ + ++ + D + + +++
Sbjct: 33 NEVVVVNAGLKSEGVIPRNQFLSDSGELEVSVGDEVQVALDAVEDGFGETRLSRERAKRF 92
Query: 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEI 147
A W A E+ +G I G GG V S+ FLP + + + + H
Sbjct: 93 AAWGVLEAAHEANETVKGVITGKVKGGFTVDVQSIRAFLPGSLVD----VRPVRDTTH-- 146
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR------------ 195
L + KVI+ +++ +V S + + ++ S+ +
Sbjct: 147 ---LESIELEFKVIKLDQKRNNVVVSRRAVIESENSAEREELLENLEEGSELKGIVKNLT 203
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
DYGAF+ L DGL H+T +++W I+ +++ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVQVGDEIDVKVLKFDRERNRVSL 257
Query: 256 SIKQLEEDPLLETLEKVIPQG 276
IKQL DP ++ ++ P+G
Sbjct: 258 GIKQLGSDPWVDINDR-YPEG 277
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 23/181 (12%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
G +G++ G V V G + +M ++ P K ++ G + V
Sbjct: 277 GARLQGRVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVN------LGDEVEV 330
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 210
V+ +EE +++ K V WN++++ N D G D+G FI L DG
Sbjct: 331 MVLDIDEERRRISLGIKQCVPNPWNEFAATHNKGDKVSGSIKSITDFGIFIGL---DG-- 385
Query: 211 HLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GLVH+S++SW + + +RD +GDEV V+ +D E+ RI+L IKQ++ DPL E
Sbjct: 386 GIDGLVHLSDISWTVAGEEAVRD-YKKGDEVEAVVLAVDAERERISLGIKQVDSDPLAEY 444
Query: 269 L 269
L
Sbjct: 445 L 445
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
+G ++ G V + G L M+ K P + + G I VKV++
Sbjct: 196 KGIVKNLTDYGAFVDLGGIDGLLHITDMAWKR-IKHPSEVVQ------VGDEIDVKVLKF 248
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+ E ++ K W + R GR DYG F+ + DG+ GL
Sbjct: 249 DRERNRVSLGIKQLGSDPWVDINDRYPEGARLQGRVTNLTDYGCFVEIE--DGV---EGL 303
Query: 216 VHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
VHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L IKQ +P E
Sbjct: 304 VHVSEMDW-TNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGIKQCVPNPWNE 356
>gi|387823727|ref|YP_005823198.1| 30S ribosomal protein S1 [Francisella cf. novicida 3523]
gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
Length = 556
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 252 RITLSIKQLEED 263
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 175 EENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 234 VLS------IGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 288 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 342
Query: 254 TLSIKQLEEDPLLE 267
+L IKQ +P E
Sbjct: 343 SLGIKQCRPNPWSE 356
>gi|384419610|ref|YP_005628970.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462523|gb|AEQ96802.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|392547449|ref|ZP_10294586.1| 30S ribosomal protein S1 [Pseudoalteromonas rubra ATCC 29570]
Length = 555
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A + +A +E + G I G GG V S+ FLP + +
Sbjct: 85 SREKAKRHEAWIRLEKACEEQETVV-GIINGKVKGGFTVEVDSIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR- 195
+ + H L G + KVI+ +++ +V S + + ++ S + ++ G+
Sbjct: 140 PVRDTTH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREELLANLVEGQE 194
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDP 264
D+EK+R++L +KQL EDP
Sbjct: 249 DKEKTRVSLGLKQLGEDP 266
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WAAIAGRYPEGAKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVS--- 323
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V V++ +EE +++ K W +++ N D G+ D+G F
Sbjct: 324 ---LGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLQNKGDQVTGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
I L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +K
Sbjct: 381 IGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEISAIVLQVDPERERISLGVK 434
Query: 259 QLEEDPL 265
Q+E DP
Sbjct: 435 QIEADPF 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ G V + G L M+ K P + ++ G I+VKV++ +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIAVKVLKFD 249
Query: 165 EEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLV 216
+E ++ K + W + R GR DYG F+ + + GLV
Sbjct: 250 KEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE-----EGVEGLV 304
Query: 217 HVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
HVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ + +P E
Sbjct: 305 HVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQE 356
>gi|325915995|ref|ZP_08178288.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
gi|325537805|gb|EGD09508.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
Length = 562
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVGVGDQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella novicida FTE]
gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|385792087|ref|YP_005825063.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
FTE]
gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
Length = 556
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 252 RITLSIKQLEED 263
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 175 EENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 234 VLS------IGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 288 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 342
Query: 254 TLSIKQLEEDPLLE 267
+L IKQ +P E
Sbjct: 343 SLGIKQCRPNPWSE 356
>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716548|ref|YP_005304884.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725231|ref|YP_005317417.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TI0902]
gi|385793945|ref|YP_005830351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|421754800|ref|ZP_16191764.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|377826680|gb|AFB79928.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TI0902]
gi|377828225|gb|AFB78304.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TIGB03]
gi|409090280|gb|EKM90301.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
Length = 556
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
GKI GG + L FLP + + I ++A L I +KV++ +
Sbjct: 110 GKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH-LEDKDIELKVVKID 160
Query: 165 EEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
+ +V S K DA+ K S ++ I D+GAFI L DGL H+
Sbjct: 161 TKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHI 220
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL EDP L
Sbjct: 221 T------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWL 268
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 252 RITLSIKQLEED 263
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 175 EENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 234 VLS------IGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNI 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G E+ V V+++D + RI
Sbjct: 288 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEIEVIVLELDADNHRI 342
Query: 254 TLSIKQLEEDPLLE 267
+L IKQ +P E
Sbjct: 343 SLGIKQCRPNPWSE 356
>gi|437391503|ref|ZP_20751140.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435199610|gb|ELN83675.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
Length = 306
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 151 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 198
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 7 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 66
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 67 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 120
Query: 259 QLEEDPLLETLEKVIPQG 276
QL EDP + + K P+G
Sbjct: 121 QLGEDPWV-AIAKRYPEG 137
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 35 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 93
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 94 IVN------VGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 147
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 148 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 201
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 202 ISLGLKQCKSNP 213
>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
Length = 403
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD V ++K +S++ V D+ G+ ++G+FI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPF 273
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + VK
Sbjct: 198 GDVVEGKVSRLTNFGSFIDVGGVDGLVHISEISYKHVDK-PSDVLK------VGQDVKVK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI + + ++ S K + + + ++ +N DIF G ++GAF+ + DG+
Sbjct: 251 VIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIK 352
>gi|438000073|ref|YP_007183806.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813003|ref|YP_007449456.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339307|gb|AFZ83729.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778972|gb|AGF49852.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 570
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 32/244 (13%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ N ++ + + D + +++ + W ESG + G I G
Sbjct: 67 GEIEVNQGDFVSVAIDSLENGYGDTVLSRDRAKRLSAWLKLEQALESGELITGSITGKVK 126
Query: 113 GGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
GGL V + FLP + P + G + KVI+ + + +
Sbjct: 127 GGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE-----------GKTMEFKVIKLDRKRNNV 175
Query: 171 VFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHV 218
V S + + +E+++ G DYGAFI L DGL H+T
Sbjct: 176 VLSRRQVLEASMGEERQKLLENLYEGAIVKGVVKNITDYGAFIDLGGIDGLLHIT----- 230
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLE 278
+++W ++ ++L E+ KV+K D+EK+R++L +KQL EDP ++ L + PQG
Sbjct: 231 -DMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVD-LARRYPQGTH 288
Query: 279 PYLK 282
+ K
Sbjct: 289 LFGK 292
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GKI G V + G + +M ++ +P+K +
Sbjct: 280 ARRYPQGTHLF-GKITNLTDYGAFVEVELGIEGLVHVSEMDWTNKNVDPRKVV------T 332
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +E+ +++ K W +++ D G D+G F+ L
Sbjct: 333 LGEEVEVMVLEIDEDRRRISLGMKQCRPNPWEEFAVNFKKGDKVKGAIKSITDFGVFVGL 392
Query: 204 RFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
P G+ GLVH+S++SW + + +R+ L +GDE+ V+ ID K RI+L +KQLE
Sbjct: 393 --PGGI---DGLVHLSDLSWTDNGEESVRN-LKKGDEIEAVVLGIDTAKERISLGVKQLE 446
Query: 262 EDPL 265
DP
Sbjct: 447 GDPF 450
>gi|406674200|ref|ZP_11081411.1| ribosomal protein S1 [Bergeyella zoohelcum CCUG 30536]
gi|423317311|ref|ZP_17295216.1| ribosomal protein S1 [Bergeyella zoohelcum ATCC 43767]
gi|405581444|gb|EKB55473.1| ribosomal protein S1 [Bergeyella zoohelcum ATCC 43767]
gi|405584611|gb|EKB58501.1| ribosomal protein S1 [Bergeyella zoohelcum CCUG 30536]
Length = 590
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 31/232 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNR----QSQSRSSADWKAARAYKESGFIYE 104
+ + +F N+ V ++D D + ++R+ W ESG I
Sbjct: 79 VISLNEFRYNSGLQVGDEVEVMVDRREDKTGQLQLSHKKARTLKAWDKVNELHESGEIVN 138
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G ++ GG++V F + FLP Q+ +P K + G + KV++ N
Sbjct: 139 GFVKSRTKGGMIVDVFGIEAFLPGSQIDV-----KPIKDYDQ----FVGKTMEFKVVKIN 189
Query: 165 EEMKKLVFSEK-----DAVWNKYSSRVNVE--DIFVGR-----DYGAFIHLRFPDGLYHL 212
E K +V S K D K +E + G YG FI L DGL
Sbjct: 190 PEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLEGTVKNITSYGVFIDLGGVDGL--- 246
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H++++SW + +IL +G V+V ++ D EK+RI L +KQLE P
Sbjct: 247 ---IHITDLSWSRVNHPSEILEDGQTVKVVILDFDDEKTRIQLGMKQLEPHP 295
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
A E G + EG ++ G+ + + G + +S S P + + + G
Sbjct: 216 AQLEKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWSR-VNHPSEILED------GQ 268
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
+ V ++ ++E ++ K W+ S+ + V D G+ DYGAF+ + P
Sbjct: 269 TVKVVILDFDDEKTRIQLGMKQLEPHPWDALSAELKVGDKVKGKVVVLADYGAFVEIA-P 327
Query: 207 DGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GL+HVSE+SW ++ D + GDEV +V+ +DRE+ +++L +KQL DP
Sbjct: 328 ----GVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREERKVSLGMKQLSNDP- 382
Query: 266 LETLEKVIPQG 276
E +E P G
Sbjct: 383 WENIEAKYPVG 393
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G F+ L + GL+++S++SW I+ + + GD++ V V+++D+ R++
Sbjct: 405 NFGVFVELE-----EGIDGLIYISDLSWTKKIKHPSEFCSVGDKLDVVVLELDKAARRLS 459
Query: 255 LSIKQLEEDP 264
L KQL E+P
Sbjct: 460 LGHKQLTENP 469
>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain-containing protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
14884]
Length = 551
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 82 SQSRSSAD--WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
S+ R+ AD W+ E+G E I+ GGL+ L FLP Q+
Sbjct: 116 SKKRADADKAWRKVVELYENGEPVEVTIREKVRGGLVTYIEGLRAFLPASQVD------- 168
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNV 188
K ++++ G G + VK+I+ + + +++ S + V V
Sbjct: 169 -IKRVNDL-DGFVGQTLPVKIIELSRKKGRIILSRRVLLEEEQKRLRQQVLQSLEPGQEV 226
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
E V ++G F++L H+ GLVH SE++W + R+++ GD+VR +V+ +D
Sbjct: 227 EGAVVEVTEFGVFVNL------GHIDGLVHRSELTWGRFEHPREVVQVGDQVRARVLSVD 280
Query: 248 REKSRITLSIKQLEEDP 264
E+ R+ LSIK L DP
Sbjct: 281 PERERVNLSIKALTPDP 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNG-GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ E G GK+ G G L L G + +MS + K P + + E
Sbjct: 298 WETVSERYEVGQRVRGKVVGLTPFGAFLEVEPGLEGLIHVSEMSWTKRPKHPSEVLKE-- 355
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V++ + E ++L + + W + + + G+ ++G F
Sbjct: 356 ----GEEVEAVVLRIDPEARRLSLGLRQTMPDPWKELPEKYPPGTVIKGKITGVTEFGVF 411
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L + GLVH+SE+ + I++ + +G+E+ V +++ID + RI+LS K+L
Sbjct: 412 VELE-----PGIEGLVHISELDYARIENPAEQFKKGEELEVVILQIDPVEQRISLSRKRL 466
Query: 261 EEDPL 265
P+
Sbjct: 467 LPPPV 471
>gi|317050911|ref|YP_004112027.1| RNA-binding S1 domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945995|gb|ADU65471.1| RNA binding S1 domain protein [Desulfurispirillum indicum S5]
Length = 544
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQ 141
+ +S W E G + +GK+ F G V + G + +MS + + P
Sbjct: 273 KQKSDDPWNNIAERCECGTVVKGKVVSFVDYGAFVEIEPGIEGLIHISEMSWTSRVRSPS 332
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVGR-- 195
+ + G + V+++ + E ++L S + AV W+ R V + G+
Sbjct: 333 QVLK------IGDEVEVRILDIDSENRRLSLSLR-AVRPNPWDVVGERYPVGTVVKGKIK 385
Query: 196 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252
++GAF+ L + GL+H+S++SW +I+ GDEV KV+ DREK R
Sbjct: 386 NITEFGAFLGLD-----EGVDGLIHISDMSWSRSNHPSEIVKVGDEVEAKVLAFDREKER 440
Query: 253 ITLSIKQLEEDPLLETLEKVIPQG 276
++L +KQLEE+P + +EK P G
Sbjct: 441 LSLGLKQLEENP-WDVVEKQFPIG 463
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 84 SRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
S+ AD W A E G ++EG I G V + FLP Q+
Sbjct: 94 SKQKADQRRGWDDIVAGFEEGRLFEGTIVDVVNRGFTVNINGVRAFLPLSQVDLRQVRDN 153
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIF 192
P++ + GLTG KVI + + +V S EK+ + ++ +
Sbjct: 154 PEEMRTYV--GLTGQF---KVINVSPKRHNVVVSRRAPLEEEKNKAKQQLIEKLVPGSLL 208
Query: 193 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
GR +YG FI L DGL H+T ++SW + + +EGDEV V V+ +
Sbjct: 209 TGRVKNITEYGVFIDLGGFDGLLHIT------DISWGRVSHPSAVFSEGDEVEVVVLDFN 262
Query: 248 REKSRITLSIKQLEEDP 264
+ R++L KQ +DP
Sbjct: 263 PQNERVSLGYKQKSDDP 279
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W G + +GKI+ G + V G + MS S S P EI
Sbjct: 367 WDVVGERYPVGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRS-NHPS----EIV 421
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-RDYGAF 200
K G + KV+ + E ++L K D V ++ V V D+GAF
Sbjct: 422 K--VGDEVEAKVLAFDREKERLSLGLKQLEENPWDVVEKQFPIGSRVSGTVVNLTDFGAF 479
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ GL+HVSE+S D I+ D+L+ G ++ VIK+ +E RI LS+K++
Sbjct: 480 VKLE--DGV---EGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDRRIGLSMKEV 534
Query: 261 EE 262
E
Sbjct: 535 GE 536
>gi|94676844|ref|YP_588705.1| 30S ribosomal protein S1 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219994|gb|ABF14153.1| ribosomal protein S1 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 558
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 42/238 (17%)
Query: 50 CPVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESG 100
P+ +F NA VN +D + DA +R R A +AY+E+
Sbjct: 48 IPIAQF-YNAQGELEIKVNDQVDVALDAVEDGFGETILSRDKAKRHEAWLMLEQAYEEAA 106
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
I G I GG V + FLP M P + ++H L G +
Sbjct: 107 -IVTGIINSKVKGGFTVELNGIRAFLPGSLVDMRP------VRDTLH-----LEGKELEF 154
Query: 159 KVIQANEEMKKLVFSEKDAVWNKYS-SRVNV-EDIFVG----------RDYGAFIHLRFP 206
KVI+ +++ +V S + + ++ S R N+ E++ G DYGAF+ L
Sbjct: 155 KVIKLDQKRNNVVVSRRAVIESENSFERDNLLENMQEGMEVKGLVKNLTDYGAFVDLGGV 214
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DGL H+T +++W ++ +I+ GDE+ VK++K DRE++R++L +KQL +DP
Sbjct: 215 DGLLHIT------DMAWKRVKHPSEIVTIGDEIIVKILKFDRERTRVSLGLKQLSQDP 266
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E+ + G++ G V V G + +M ++ P K ++
Sbjct: 267 WYAIAQRYPENSRLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGA 199
I+ + V+ +EE +++ K W K++ D G+ D+G
Sbjct: 324 ----VNDIVEIMVLDIDEERRRISLGLKQCQANPWQKFAETHEKGDRVEGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L + GLVH+S++ W+L ++ +G+E+ V+++D E+ RI+L IK
Sbjct: 380 FIGLEGG-----IDGLVHLSDIYWNLSGEEAAREYKKGEEIAAVVLQVDAERERISLGIK 434
Query: 259 QLEEDPL 265
QL++DPL
Sbjct: 435 QLDQDPL 441
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + + G I
Sbjct: 190 QEGMEVKGLVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIV------TIGDEII 242
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VK+++ + E ++ K W + R GR DYG F+ +
Sbjct: 243 VKILKFDRERTRVSLGLKQLSQDPWYAIAQRYPENSRLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP--- 264
+ GLVHVSE+ W +++ ++N D V + V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNVHPSKVVNVNDIVEIMVLDIDEERRRISLGLKQCQANPWQK 356
Query: 265 LLETLEK 271
ET EK
Sbjct: 357 FAETHEK 363
>gi|406903916|gb|EKD45849.1| hypothetical protein ACD_69C00107G0001 [uncultured bacterium]
Length = 585
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 34/234 (14%)
Query: 50 CPVGKFSTNAAKITPT---TVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGFI 102
P+ +F ++ V+ +L+ + + SR A W+A E+
Sbjct: 82 VPISEFRNQNNELEAAIGDVVDVVLEAFENGTGKTILSREKAKRMESWQALEKAFENNET 141
Query: 103 YEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162
+G + GG V + FLP + +P + I G + K+I+
Sbjct: 142 VKGLVTERVRGGFTVEINKIRSFLPGSLVDT-----KPVRDTSYIE----GKELEFKIIK 192
Query: 163 ANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLY 210
+++ +V S E++A+ + V + DYGAFI L DGL
Sbjct: 193 VDKKQNNIVVSRRAALMAESTPEREALLSSLEEGSEVTGVVKNLTDYGAFIDLGGIDGLL 252
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T ++SW I+ ++L GDEVRVKV+K DR+K+R++L +KQL EDP
Sbjct: 253 HIT------DISWKRIRHPSELLKLGDEVRVKVLKYDRDKNRVSLGLKQLAEDP 300
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 195
K++H G + V V++ +EE +++ K W +YS+ +I G
Sbjct: 348 KNVHPSKVVSQGQEVEVMVLEIDEERRRISLGMKQCKSNPWKEYSNLHAKGEIIKGTIKS 407
Query: 196 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 251
D+G FI L + GLVH+S++SW + IR+ +G E+ ++ ID E+
Sbjct: 408 ITDFGIFIGLEGD-----IDGLVHLSDISWSDPGEKAIRN-YKKGQEIETVILAIDAERE 461
Query: 252 RITLSIKQLEEDPLLETLEKVIPQG 276
RI+L IKQLE+D + LEK P+G
Sbjct: 462 RISLGIKQLEQDIYAQYLEKN-PKG 485
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 253
DYG F+ + + GLVH+SE++W +++ ++++G EV V V++ID E+ RI
Sbjct: 323 DYGCFVEIE-----SGIEGLVHMSEINW-TNKNVHPSKVVSQGQEVEVMVLEIDEERRRI 376
Query: 254 TLSIKQLEEDPLLE 267
+L +KQ + +P E
Sbjct: 377 SLGMKQCKSNPWKE 390
>gi|254524507|ref|ZP_05136562.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
gi|344207106|ref|YP_004792247.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia JV3]
gi|386718233|ref|YP_006184559.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia D457]
gi|408824025|ref|ZP_11208915.1| 30S ribosomal protein S1 [Pseudomonas geniculata N1]
gi|219722098|gb|EED40623.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
gi|343778468|gb|AEM51021.1| ribosomal protein S1 [Stenotrophomonas maltophilia JV3]
gi|384077795|emb|CCH12384.1| SSU ribosomal protein S1p [Stenotrophomonas maltophilia D457]
Length = 561
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
R Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 GRRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|190574008|ref|YP_001971853.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a]
gi|424668404|ref|ZP_18105429.1| ribosomal protein S1 [Stenotrophomonas maltophilia Ab55555]
gi|190011930|emb|CAQ45551.1| putative 30S ribosomal protein S1 [Stenotrophomonas maltophilia
K279a]
gi|401068666|gb|EJP77190.1| ribosomal protein S1 [Stenotrophomonas maltophilia Ab55555]
gi|456734286|gb|EMF59108.1| SSU ribosomal protein S1p [Stenotrophomonas maltophilia EPM1]
Length = 561
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
R Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 GRRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|443319276|ref|ZP_21048510.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442781103|gb|ELR91209.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 291
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + G + ++ G N GG++V L GF+P +S +
Sbjct: 99 WEKLTQQQSDGILISTRVTGINKGGVIVDVEGLRGFVPRSHLSHPEDLE----------- 147
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G+ ++V ++ + E KLV S K A ++ ++ V + G + YGAF+
Sbjct: 148 ALVGTTLTVGFLEVDPERNKLVLSAKIAARSQAMGQLEVGQLVTGTVVSLKPYGAFVEFE 207
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+TGL+HV+++S + + + ++L ++ V+ +D E++RI+LS K LE+ P
Sbjct: 208 ------GVTGLLHVNQISKNYVDSLPNVLKLDQPLKAIVVALDAERNRISLSTKVLEKYP 261
>gi|422616824|ref|ZP_16685529.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
japonica str. M301072]
gi|330897209|gb|EGH28628.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
japonica str. M301072]
Length = 467
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
+AA A +E + +G I G GG V + FLP + + + + H
Sbjct: 5 EAAFAAEE---VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH----- 52
Query: 151 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 198
L G + KVI+ +++ +V S E++A+ V+ I DYG
Sbjct: 53 LEGKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYG 112
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
AF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 113 AFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLK 166
Query: 259 QLEEDP 264
QL EDP
Sbjct: 167 QLGEDP 172
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 208 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 261
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 262 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 316
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 317 KGDELDTVILSVDPERERISLGIKQLESDPFSE 349
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 81 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 139
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 140 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 192
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 193 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 246
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 247 RISLGIKQCKSNP 259
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ + SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 380 IEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 426
>gi|423221968|ref|ZP_17208438.1| ribosomal protein S1 [Bacteroides cellulosilyticus CL02T12C19]
gi|392644245|gb|EIY37985.1| ribosomal protein S1 [Bacteroides cellulosilyticus CL02T12C19]
Length = 598
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EG ++ G+ + + G + +S +P K + E+ + L +
Sbjct: 212 EKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWGR-VSDP-KEVVELDQKL-----N 264
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V ++ ++E K++ K W+ S+ + V D G+ DYGAFI + P
Sbjct: 265 VVILDFDDEKKRIALGLKQLTPHPWDALSAELKVGDKVKGKVVVMADYGAFIEIA-PG-- 321
Query: 210 YHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP ET
Sbjct: 322 --VEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-WET 378
Query: 269 LEKVIPQG 276
+E+ P G
Sbjct: 379 IEEKYPVG 386
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNR----QSQSRSSADWKAARAYKESGFIYE 104
+ P+ +F N TV +++ D + ++R++ W A E+ I +
Sbjct: 72 IIPLNEFRYNPDLKIGDTVEVYIENQEDKKGQLVLSHRKARATRSWDRVNAALENEEIIK 131
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I+ GG++V F + FLP Q+ K I + G + KV++ N
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDV--------KPIRDYDV-FVGKTMEFKVVKIN 182
Query: 165 EEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHL 212
+E K +V S K + + ++ + G YG FI L DGL
Sbjct: 183 QEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYGVFIDLGGVDGL--- 239
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H++++SW + D ++++ ++ V ++ D EK RI L +KQL P
Sbjct: 240 ---IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHP 288
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G F+ + + GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE-----EGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 255 LSIKQLEEDP 264
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|424794322|ref|ZP_18220306.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433676293|ref|ZP_20508425.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440731386|ref|ZP_20911409.1| 30S ribosomal protein S1 [Xanthomonas translucens DAR61454]
gi|422796013|gb|EKU24602.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430818594|emb|CCP38707.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440373251|gb|ELQ10015.1| 30S ribosomal protein S1 [Xanthomonas translucens DAR61454]
Length = 559
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDLVKVALDSLENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + +Y GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVY-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196]
gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196]
Length = 571
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 48 NLCPVGKFSTNAAKI-------TPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESG 100
+ PV +F + ++ + + D + + +++ W A ESG
Sbjct: 55 SFIPVDEFKNDKGEVEAKPGDFVSVAIEALEDGYGETRLSRDKAKRLTAWHDLEAAMESG 114
Query: 101 FIYEGKIQGFNGGGLL-----VRFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT 152
I G + G GGL +R F SLV P +P + KE + + ++ +
Sbjct: 115 AIVSGVVSGKVKGGLTAMINGIRAFLPGSLVDIRPVKDTTP-YENKEMEFKVIKLDRKRN 173
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYH 211
++S + + +++ +++ + + V+ I DYGAF+ L DGL H
Sbjct: 174 NVVVSRRAV-----LEETQGADRQTLLANLTEGAIVKGIVKNITDYGAFVDLGGIDGLLH 228
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+T L +W ++ ++++ GDEV KV+K D+EK+R++L +KQL EDP
Sbjct: 229 ITDL------AWRRVKHPSEVISVGDEVTAKVLKFDQEKNRVSLGMKQLTEDP 275
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V + G + +M ++ P K + G + V +++
Sbjct: 291 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKVVQ------LGDEVEVMILEI 344
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W ++ D G+ D+G FI L+ + GL
Sbjct: 345 DEERRRISLGMKQCKVNPWEDFAMNHQKGDKVRGQIKSITDFGVFIGLQGG-----IDGL 399
Query: 216 VHVSEVSWDL--IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW+ + +R+ +GDEV V+ ID E+ RI+L IKQLE DP
Sbjct: 400 VHLSDLSWNQPGEEAVRN-YKKGDEVEAVVLSIDVERERISLGIKQLEGDPF 450
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ AD + A G I +G ++ G V + G L ++ K P +
Sbjct: 184 EETQGADRQTLLANLTEGAIVKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSE 242
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR---- 195
I G ++ KV++ ++E ++ K W S R G+
Sbjct: 243 VIS------VGDEVTAKVLKFDQEKNRVSLGMKQLTEDPWVGLSRRYPPHTRLFGKVSNL 296
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSR 252
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID E+ R
Sbjct: 297 TDYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVYPSKVVQLGDEVEVMILEIDEERRR 350
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 351 ISLGMKQCKVNP 362
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SEVS D ++DIR L EGD V +I +DR+ I LSIK + + ++K
Sbjct: 483 VEGYLRASEVSRDRVEDIRSHLKEGDVVEAMIINVDRKNRGINLSIKAKDMAEESDAMQK 542
Query: 272 V 272
V
Sbjct: 543 V 543
>gi|429462693|ref|YP_007184156.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811552|ref|YP_007448007.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338207|gb|AFZ82630.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776710|gb|AGF47709.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 570
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 32/244 (13%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G N ++ + + D + +++ + W ESG + G I G
Sbjct: 67 GNIEVNTGDFVSVAIDSLENGYGDTILSRDRAKRLSAWLKLEQALESGELITGTITGKVK 126
Query: 113 GGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
GGL V + FLP + P + G + KVI+ + + +
Sbjct: 127 GGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE-----------GKTMEFKVIKLDRKRNNV 175
Query: 171 VFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGLYHLTGLVHV 218
V S + + +E+++ G DYGAFI L DGL H+T
Sbjct: 176 VLSRRQVLEASVGEERQKLLENLYEGAVVKGVVKNITDYGAFIDLGGVDGLLHIT----- 230
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLE 278
+++W ++ ++L E+ KV+K D+EK+R++L +KQL EDP ++ L + PQG
Sbjct: 231 -DMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNRVSLGVKQLGEDPWVD-LSRRYPQGTR 288
Query: 279 PYLK 282
+ K
Sbjct: 289 LFGK 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V S + G + +M ++ +P+K +
Sbjct: 280 SRRYPQGTRLF-GKVTNLTDYGAFVEVESGIEGLVHVSEMDWTNKNVDPRKVVT------ 332
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + + V++ +EE +++ K W +++ D G D+G F+ L
Sbjct: 333 LGDEVEIMVLEIDEERRRISLGMKQCRVNPWEEFAVNFKKGDKVKGAIKSITDFGIFVGL 392
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P G+ GLVH+S++SW D ++I L +GDE+ V+ ID K RI+L +KQL
Sbjct: 393 --PGGI---DGLVHLSDLSWTDSGEEIVRALKKGDEIEAVVLGIDTSKERISLGVKQLVN 447
Query: 263 DPL 265
DP
Sbjct: 448 DPF 450
>gi|381160841|ref|ZP_09870073.1| ribosomal protein S1 [Thiorhodovibrio sp. 970]
gi|380878905|gb|EIC20997.1| ribosomal protein S1 [Thiorhodovibrio sp. 970]
Length = 559
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 27/228 (11%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQ 108
L P G+ ++ + D + +++ A W + G G I
Sbjct: 54 LSPEGELEVAIGDDVQVALDAVEDGFGVTRLSREKAKRFAAWDTLETAFDDGATVTGMIN 113
Query: 109 GFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK 168
G GG V S+ FLP + + + + A L G + KVI+ +
Sbjct: 114 GKVKGGFTVELGSVRAFLPGSLVDV--------RPVRDTAY-LEGKDLEFKVIKLDRRRN 164
Query: 169 KLVFSEKDAVWNKYSSRVN---------VEDIFVGR---DYGAFIHLRFPDGLYHLTGLV 216
+V S + V +YS+ + VE + V + DYGAF+ L DGL H+T
Sbjct: 165 NVVVSRRAVVEEEYSAERDALLDKLEEGVELMGVVKNLTDYGAFLDLGGIDGLLHIT--- 221
Query: 217 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+++W ++ +++ G EV VKV+K DR++ R++L +KQ+ EDP
Sbjct: 222 ---DMAWRRVKHPSEVVEIGQEVMVKVLKFDRDRQRVSLGLKQMGEDP 266
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ES ++ GK+ G V V G + +M ++ P K +
Sbjct: 271 ARRYPESTRVF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVS------ 323
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W+++S+ D G+ D+G FI L
Sbjct: 324 LGDEVEVMVLDIDEERRRISLGVKQCQTNPWDEFSATHKKGDHVSGQIKSITDFGIFIGL 383
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SWD +D +GD + V+ +D E+ RI+L +KQL++
Sbjct: 384 ---DG--GIDGLVHLSDISWDETGEDSLRNYKKGDVLETVVLSVDPERERISLGVKQLDK 438
Query: 263 DPL 265
DP
Sbjct: 439 DPF 441
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
+ G + SE+S D ++D R +L +EV K + +DR+ I+LSIK
Sbjct: 474 VEGYLRASEISRDRVEDARSVLKPDEEVEAKFVGVDRKNRTISLSIK 520
>gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
Length = 409
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
+G + EGK+ G + + G + ++S H K P + G + V
Sbjct: 200 AGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISYDHVDK-PSDVLE------VGQDVKV 252
Query: 159 KVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
KV+ + E +++ S K + W+ + V+ + G +GAF+ + FP
Sbjct: 253 KVLNVDPERERISLSIKQTLPGPWDDIEEKAAVDTVLTGTVKRLTSFGAFVEV-FP---- 307
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I D+L G EV+VKVI +D E+ R+ LSIK LEE P
Sbjct: 308 GVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVDPERQRLGLSIKALEEKP 361
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 28/194 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSH-------SCKEPQK 142
W + ++G K+ GGL+V + GF+P ++ + +E +
Sbjct: 105 WDDIQKKFDAGETITAKVTQSVKGGLVVDA-GVRGFVPASMITDHYVEDLNQFKGQELEF 163
Query: 143 SIHEIAKGLTGSIISVKVI--QANEEMKKLVFSE---KDAVWNKYSSRVNVEDIFVGRDY 197
I EI I+S K I + +EE K +FSE D V K + N +
Sbjct: 164 KIIEIEPSENRLILSHKEIVKKEHEEAAKKIFSELAAGDVVEGKVARMTN---------F 214
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAFI L DGL VHVSE+S+D + D+L G +V+VKV+ +D E+ RI+LSI
Sbjct: 215 GAFIDLGGVDGL------VHVSEISYDHVDKPSDVLEVGQDVKVKVLNVDPERERISLSI 268
Query: 258 KQLEEDPLLETLEK 271
KQ P + EK
Sbjct: 269 KQTLPGPWDDIEEK 282
>gi|189467749|ref|ZP_03016534.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
17393]
gi|224538667|ref|ZP_03679206.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
DSM 14838]
gi|189436013|gb|EDV04998.1| 30S ribosomal protein S1 [Bacteroides intestinalis DSM 17393]
gi|224519711|gb|EEF88816.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
DSM 14838]
Length = 598
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EG ++ G+ + + G + +S +P K + E+ + L +
Sbjct: 212 EKGQVLEGTVKNITSYGVFIDLGGVDGLIHITDLSWGR-VSDP-KEVVELDQKL-----N 264
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V ++ ++E K++ K W+ S+ + V D G+ DYGAFI + P
Sbjct: 265 VVILDFDDEKKRIALGLKQLTPHPWDALSAELKVGDKVKGKVVVMADYGAFIEIA-PG-- 321
Query: 210 YHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP ET
Sbjct: 322 --VEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-WET 378
Query: 269 LEKVIPQG 276
+E+ P G
Sbjct: 379 IEEKYPVG 386
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 49 LCPVGKFSTNAAKITPTTVNPILDDSSDANNR----QSQSRSSADWKAARAYKESGFIYE 104
+ P+ +F N TV +++ D + ++R++ W A E+ I +
Sbjct: 72 IIPLNEFRYNPDLKIGDTVEVYIENQEDKKGQLVLSHRKARATRSWDRVNAALENEEIIK 131
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I+ GG++V F + FLP Q+ K I + G + KV++ N
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDV--------KPIRDYDV-FVGKTMEFKVVKIN 182
Query: 165 EEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHL 212
+E K +V S K + + ++ + G YG FI L DGL
Sbjct: 183 QEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYGVFIDLGGVDGL--- 239
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+H++++SW + D ++++ ++ V ++ D EK RI L +KQL P
Sbjct: 240 ---IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHP 288
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G F+ + + GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE-----EGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 255 LSIKQLEEDP 264
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|380512228|ref|ZP_09855635.1| 30S ribosomal protein S1 [Xanthomonas sacchari NCPPB 4393]
Length = 559
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDLVKVALDSLENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|194365424|ref|YP_002028034.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
gi|194348228|gb|ACF51351.1| ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
Length = 561
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 49 LCPVGKFSTNAAKITPTT---VNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGF 101
+ P+ +F +A +I V LD + SR A W E
Sbjct: 48 IVPIEQFRNDAGEIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNE 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
G+I G GG V + FLP + ++P L G + K+I
Sbjct: 108 TITGRISGKVKGGFTVDIKDVRAFLP-GSLVDVRPVRDPAY--------LEGKELEFKLI 158
Query: 162 QANEEMKKLVFSEKDAVWNKYSS-RVNVED------IFVG-----RDYGAFIHLRFPDGL 209
+ + + +V S + V +++S R + D I G DYGAF+ L DGL
Sbjct: 159 KLDRKRNNVVVSRRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDLGGIDGL 218
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +KQL EDP
Sbjct: 219 LHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDP 267
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y + ++ GK+ G V V G + +M ++ P K +
Sbjct: 272 ARRYPANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQ------ 324
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL 384
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
DG + GLVH+S++SW +DI +GD + V+ +D E+ RI+L +KQLE+
Sbjct: 385 ---DG--GIDGLVHLSDISWATTGEDIVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQ 439
Query: 263 DPL 265
DP
Sbjct: 440 DPF 442
>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 574
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W E+ GKI GG + L FLP + + I ++A
Sbjct: 113 WDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDT--------RPIKDVAH 164
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDY 197
L I +KV++ + + +V S K DA+ K S ++ I D+
Sbjct: 165 -LEYKDIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDF 223
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L I
Sbjct: 224 GAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGI 277
Query: 258 KQLEEDPLL 266
KQL EDP L
Sbjct: 278 KQLGEDPWL 286
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 195
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 419 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 475
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 476 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 532
Query: 252 RITLSIKQLEED 263
ITLSIK ++ED
Sbjct: 533 SITLSIKAVDED 544
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 372 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGG-----IDGLVHISDVAWDNPAKAIKEL 426
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 427 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 458
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+ +S D A G + +G ++ G + + G L +S S P
Sbjct: 193 EENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSR-ISHPTD 251
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
+ G I VKVI+ ++E +++ K + W ++ + V +G
Sbjct: 252 VLS------IGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVCAKLMGTVTNI 305
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRI 253
DYG F+ L+ + GLVH SE+ W + + ++ G EV V V+++D + RI
Sbjct: 306 TDYGCFVKLK-----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRI 360
Query: 254 TLSIKQLEEDPLLE 267
+L IKQ +P E
Sbjct: 361 SLGIKQCRPNPWSE 374
>gi|427403196|ref|ZP_18894193.1| 30S ribosomal protein S1 [Massilia timonae CCUG 45783]
gi|425717932|gb|EKU80886.1| 30S ribosomal protein S1 [Massilia timonae CCUG 45783]
Length = 558
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ A W A ESG I G + G GGL V + FLP + + K+
Sbjct: 85 RDKAKRLASWLALEKAMESGEIVTGTVNGKVKGGLTVLTNGIRAFLP-GSLVDTRPVKDT 143
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFV 193
G + KVI+ + + +V S + + K + +
Sbjct: 144 TP--------FEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERAKLMETLKEGTVVT 195
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G DYGAF+ L DGL H+T L +W ++ ++L+ G E+ KV+K D+
Sbjct: 196 GVVKNITDYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGQEITAKVLKYDQ 249
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL +DP L + PQG + K
Sbjct: 250 EKNRVSLGVKQLGDDPWT-GLSRRYPQGTRLFGK 282
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I+ KV++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 237 GQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVE 296
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVHVSE+ W +++ ++ GDEV V V++ID E+ RI+L +KQ +
Sbjct: 297 -----QGIEGLVHVSEMDW-TNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKA 350
Query: 263 DP 264
+P
Sbjct: 351 NP 352
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 22/183 (12%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
+R Y + ++ GK+ G V + G + +M ++ P K +
Sbjct: 270 SRRYPQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQ------ 322
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +EE +++ K W+ + D G D+G FI L
Sbjct: 323 LGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFGMTHKKGDKVKGSIKSITDFGVFIGL 382
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
P ++ GLVH+S++SW + ++ +GDE+ V+ ID E+ R++L +KQLE
Sbjct: 383 --PG---NIDGLVHLSDLSWTEAGEEAVRRFKKGDELEAVVLAIDVERERVSLGVKQLEG 437
Query: 263 DPL 265
DP
Sbjct: 438 DPF 440
>gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog, partial [Homo sapiens]
Length = 406
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 113 GGLLVRFFSLVGFLPFPQMSP-------SHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL+V + GF+P ++ K+ + + EI I+S K + A E
Sbjct: 134 GGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILSRKAVAAQE 193
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+L V++K S VE V R D+GAF+ L DGL VHVSE+S
Sbjct: 194 RAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL------VHVSEISH 241
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV----IPQGLEP 279
D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++ + +G
Sbjct: 242 DRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVK 301
Query: 280 YLKSF 284
+K F
Sbjct: 302 RVKDF 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G V + G + ++S K P + + G + VK
Sbjct: 208 GEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDR-VKNPADVLTK------GDKVDVK 260
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
++ + E ++ S K W++ + ++ + G +D+GAF+ + L
Sbjct: 261 ILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI-----LPG 315
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P E
Sbjct: 316 IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 371
>gi|417951800|ref|ZP_12594885.1| 30S ribosomal protein S1 [Vibrio splendidus ATCC 33789]
gi|342803752|gb|EGU39101.1| 30S ribosomal protein S1 [Vibrio splendidus ATCC 33789]
Length = 556
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 103/245 (42%), Gaps = 35/245 (14%)
Query: 51 PVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSAD----WKAARAYKESGFIY 103
P +F A + V+ LD D SR A W E
Sbjct: 49 PAEQFKNAAGDLEVEVGAEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETV 108
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G I G GG V + FLP + + I + A L + KVI+
Sbjct: 109 VGIINGKVKGGFTVELNGIRAFLPGSLVDV--------RPIRDTAH-LENKELEFKVIKL 159
Query: 164 NEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYH 211
+++ +V S E+D + V+ I DYGAF+ L DGL H
Sbjct: 160 DQKRNNVVVSRRAVIESENSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLH 219
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 220 IT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSLGLKQLGEDPWV-AIAK 272
Query: 272 VIPQG 276
P+G
Sbjct: 273 RYPEG 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 90 WKA-ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEI 147
W A A+ Y E G G++ G V V G + +M ++ P K ++
Sbjct: 267 WVAIAKRYPE-GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN-- 323
Query: 148 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-----DYGA 199
G + V V+ +EE +++ K N + S ++ D G+ D+G
Sbjct: 324 ----VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIKSITDFGI 379
Query: 200 FIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
FI L + GLVH+S++SW++ +D +GDE+ V+ +D E+ RI+L +K
Sbjct: 380 FIGLEGG-----IDGLVHLSDISWNVAGEDAVREYKKGDEISAVVLAVDAERERISLGVK 434
Query: 259 QLEEDPL 265
Q+E DP
Sbjct: 435 QMENDPF 441
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I
Sbjct: 190 QEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIL 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + + G + SEVS D I+D IL+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL-----IEGVEGYIRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 258 KQLEE 262
K +E
Sbjct: 520 KAKDE 524
>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
Length = 555
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 29/207 (14%)
Query: 82 SQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQ 141
++ +W+ G + G+++ GGL++ +G F M SH +P
Sbjct: 81 DKAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLIIS----IGVDAF--MPASHIDIQPP 134
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR---- 195
K++ + G KV++ N+E K +V S ++ + + S + +E I G+
Sbjct: 135 KNLDQ----YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQPGQVRKG 190
Query: 196 ------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 249
D+GAFI L DG+ GL+H++++SW I ++L +G+E++V +I+++R+
Sbjct: 191 VVKNITDFGAFIDL---DGM---DGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRD 244
Query: 250 KSRITLSIKQLEEDPLLETLEKVIPQG 276
K R++L +KQ ++P E +E+ P G
Sbjct: 245 KERVSLGLKQTTKNPWDE-IEQKFPVG 270
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W R G GK++ G + + G + MS + P + + +
Sbjct: 347 WDMVRHNYPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKK-- 404
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAF 200
G + V+ + +++ K W+ S + D+ G +GAF
Sbjct: 405 ----GDEVDAIVLDVDPSQQRISLGMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGAF 460
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L+ DG+ GLVH+S++S + I+ ++D+L G EV +VIKIDR++ R+ LSIK
Sbjct: 461 VDLK--DGI---DGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAA 515
Query: 261 EEDP 264
P
Sbjct: 516 NYSP 519
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGL 151
+ G + +G ++ G + + G L MS PS K+
Sbjct: 183 QPGQVRKGVVKNITDFGAFIDLDGMDGLLHITDMSWGRIAHPSEMLKQ------------ 230
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G I V +I+ N + +++ K W++ + V G+ YGAFI +
Sbjct: 231 -GEEIQVMIIEVNRDKERVSLGLKQTTKNPWDEIEQKFPVGTKIHGKVVNLVPYGAFIEI 289
Query: 204 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVH++E+SW I ++L G E+ V+ I +E +I+L ++QLE
Sbjct: 290 E-----PGVEGLVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEP 344
Query: 263 DP 264
+P
Sbjct: 345 NP 346
>gi|149928276|ref|ZP_01916519.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
gi|149823005|gb|EDM82247.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
Length = 567
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R R SA W + ESG + G I G GGL V S+ FLP +
Sbjct: 93 SRDKAKRLSA-WLSLEQALESGELVTGTITGKVKGGLTVMVNSIRAFLPGSLVDV----- 146
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDI 191
P K G + KVI+ + + +V S + V K S + +
Sbjct: 147 RPVKDTTP----FEGKTLEFKVIKLDRKRNNVVLSRRAVVEATMGEEREKLLSNLQEGSV 202
Query: 192 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G DYGAF+ L DGL H+T L +W ++ ++L G+E+ KV+K
Sbjct: 203 VKGIVKNITDYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLTVGEEIEAKVLKF 256
Query: 247 DREKSRITLSIKQLEEDP 264
D+EK+R++L +KQL EDP
Sbjct: 257 DQEKNRVSLGVKQLGEDP 274
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ +P+K + G + V V++ +EE +++ K W
Sbjct: 310 GLVHVSEMDWTNKNVDPKKVVT------LGDEVEVMVLEIDEERRRISLGMKQCAANPWE 363
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
++S+ D G D+G FI L P G+ GLVH+S++SW+ ++
Sbjct: 364 EFSTSFKKGDKVSGAIKSITDFGVFIGL--PGGI---DGLVHLSDLSWNETGEEAVRRFK 418
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDEV V+ ID E+ RI+L IKQL DP
Sbjct: 419 KGDEVEALVLAIDTERERISLGIKQLSGDPF 449
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G + SE+S D ++D R+ EGD V VI +DR+ I LSIK ++ E ++K
Sbjct: 482 IEGYLRASEISNDRVEDARNAYKEGDAVTAMVINVDRKARSIALSIKAKDQVDTDEAMKK 541
Query: 272 V 272
+
Sbjct: 542 I 542
>gi|213649373|ref|ZP_03379426.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 417
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 151 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 198
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 7 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 66
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 67 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 120
Query: 259 QLEEDPLLETLEKVIPQG 276
QL EDP + + K P+G
Sbjct: 121 QLGEDPWV-AIAKRYPEG 137
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 214 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 268
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 269 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 301
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 50 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIN 102
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 103 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 157
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 158 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 213
>gi|373460261|ref|ZP_09552014.1| ribosomal protein S1 [Prevotella maculosa OT 289]
gi|371955908|gb|EHO73704.1| ribosomal protein S1 [Prevotella maculosa OT 289]
Length = 593
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 95 AYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGS 154
++ E G + EG ++ G+ V + G + +S +P HE+
Sbjct: 208 SHLEKGQVLEGTVKNITSYGVFVDLGGVDGLIHITDLSWGR-VSDP----HEVVA--LDQ 260
Query: 155 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 206
I+V ++ +EE K++ K W+ S+ + V D G+ DYGAF+ ++ P
Sbjct: 261 KINVVILDFDEEKKRIALGLKQLTPHPWDALSADLKVGDHVKGKVVVIADYGAFVEIQ-P 319
Query: 207 DGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GL+HVSE+SW ++ ++ LN GDEV ++ +DR++ +++L IKQL+EDP
Sbjct: 320 G----VEGLIHVSEMSWSQHLRSAQEFLNVGDEVEAVILTLDRDERKMSLGIKQLKEDP- 374
Query: 266 LETLEKVIPQG 276
E +E P G
Sbjct: 375 WEAIEVKYPVG 385
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++R + W E+ I +G I+ GG++V F + FLP Q+
Sbjct: 109 KARLNKSWDKVNEALENEEIIQGYIKCRTKGGMIVDVFGIEAFLPGSQID---------- 158
Query: 143 SIHEIAKG--LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFV 193
+H I G + KV++ N+E + +V S K +A + S + +
Sbjct: 159 -VHPIRDYDVFVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKKEIISHLEKGQVLE 217
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G YG F+ L DGL +H++++SW + D +++ ++ V ++ D
Sbjct: 218 GTVKNITSYGVFVDLGGVDGL------IHITDLSWGRVSDPHEVVALDQKINVVILDFDE 271
Query: 249 EKSRITLSIKQLEEDP 264
EK RI L +KQL P
Sbjct: 272 EKKRIALGLKQLTPHP 287
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G F+ L +G+ GL+H+S++SW ++ + G E+ V V+ ID+E R++
Sbjct: 397 NFGIFVELE--EGV---DGLIHISDLSWTKKVKHPSEFTTVGAEIDVVVLDIDKENRRLS 451
Query: 255 LSIKQLEEDPLLETLEKVIPQG 276
L KQLE++P +T E + G
Sbjct: 452 LGHKQLEDNP-WDTYETIYTPG 472
>gi|375084639|ref|ZP_09731499.1| ribosomal protein S1 [Megamonas funiformis YIT 11815]
gi|374567886|gb|EHR39084.1| ribosomal protein S1 [Megamonas funiformis YIT 11815]
Length = 377
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 31/204 (15%)
Query: 84 SRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
S++ AD W+ KE I E +I GGLL F L GF+P Q++ H K+
Sbjct: 85 SKTRADRLVAWEKVEKVKEEKQIIEVEILQVVKGGLLTTAFGLRGFIPASQIA-LHFVKD 143
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR-- 195
+ G + V++++A+ + ++LV S + + + + + I G
Sbjct: 144 LNE--------FVGQKVEVEIMEADPKKQRLVLSRRSVLEAQREQKREEALASIVEGEKR 195
Query: 196 --------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAFI + DGL H+S++SWD I++ D+L+ G EV V V D
Sbjct: 196 AGVVKRLVDYGAFIDIGGVDGL------AHISDLSWDHIKNPADVLSVGQEVEVLVKAFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEK 271
E RI+LSIK DP + EK
Sbjct: 250 PETKRISLSIKDTVRDPWFDKAEK 273
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 203
G + V V + E K++ S KD V W + + V G+ D+GAF+ +
Sbjct: 237 VGQEVEVLVKAFDPETKRISLSIKDTVRDPWFDKAEKYPVGSYVKGKIVKLTDFGAFMEI 296
Query: 204 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
P GL+ + E+S I + ++ GDEV VKVI +D + ++ LSI ++++D
Sbjct: 297 E-P----GFDGLIRMRELSPKHITKASEAVSVGDEVTVKVIHVDMDNKKVALSITKVQQD 351
>gi|424779571|ref|ZP_18206490.1| 30S ribosomal protein S1 [Alcaligenes sp. HPC1271]
gi|422885669|gb|EKU28111.1| 30S ribosomal protein S1 [Alcaligenes sp. HPC1271]
Length = 531
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ A ++ + D + +++ + W + ESG + G I G
Sbjct: 68 GELEVQAGDFVSVAIDAFENGYGDTILSRDRAKRLSAWLSLEQALESGELVNGTITGKVK 127
Query: 113 GGLLVRFFSLVGFLP--FPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL 170
GGL V + FLP + P + G + KVI+ + + +
Sbjct: 128 GGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE-----------GKTLEFKVIKLDRKRNNV 176
Query: 171 VFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHV 218
V S E+ + S V+ I DYGAF+ L DGL H+T
Sbjct: 177 VLSRRAVLEASMGEERQKLLETLSEGAIVKGIVKNITDYGAFVDLGGIDGLLHIT----- 231
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 275
+++W ++ ++L G E+ KV+K D+EKSR++L +KQL EDP + L + PQ
Sbjct: 232 -DMAWRRVRHPSEVLQVGQEIEAKVLKFDQEKSRVSLGVKQLGEDPWI-GLARRYPQ 286
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 93 ARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGL 151
AR Y ++ ++ GK+ G V + G + +M ++ +P+K +
Sbjct: 281 ARRYPQNTRLF-GKVTNLTDYGAFVEVEDGIEGLVHVSEMDWTNKNVDPRKVVT------ 333
Query: 152 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHL 203
G + V V++ +E+ +++ K W ++ D G D+G F+ L
Sbjct: 334 LGEEVEVMVLEIDEDRRRISLGMKQCRANPWEDFAINFKRGDKVRGGIKSITDFGVFVGL 393
Query: 204 RFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
P G+ GLVH+S++SW + +R+ +GDEV V+ ID +K RI+L IKQLE
Sbjct: 394 --PGGI---DGLVHLSDLSWSETGEEAVRN-FKKGDEVDAVVLGIDTDKERISLGIKQLE 447
Query: 262 EDPL 265
DP
Sbjct: 448 GDPF 451
>gi|392428718|ref|YP_006469729.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
gi|419776707|ref|ZP_14302629.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
gi|423070410|ref|ZP_17059186.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
F0413]
gi|424787708|ref|ZP_18214472.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
gi|355365771|gb|EHG13491.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
F0413]
gi|383846118|gb|EID83518.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
gi|391757864|dbj|BAM23481.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
gi|422113462|gb|EKU17200.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
Length = 399
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G I GK+ G + + G + ++S H KS+ + G I VK
Sbjct: 194 GDIVTGKVARITSFGAFIDLGGVDGLVHLTELS--HERNVSPKSVVSV-----GDEIEVK 246
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ NEE ++ S K W+ ++ D+ G D+GAF+ + L
Sbjct: 247 VLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV-----LPG 301
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P+ E +K
Sbjct: 302 IDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERPVQEDEQK 361
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL V F L GF+P M + + ++ G K+ + + + + +
Sbjct: 120 GGLSVEFEGLRGFIP-ASMLDTRFVRNTER--------FVGQEFEAKIKEVDPKENRFIL 170
Query: 173 SEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S ++ V K + S++ V DI G+ +GAFI L DGL HLT L H
Sbjct: 171 SRREVVEEKAAAARAEVFSKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERN 230
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
VS + +++ GDE+ VKV+ ++ E+ R++LS+K P
Sbjct: 231 VSP------KSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTPGP 268
>gi|445495480|ref|ZP_21462524.1| 30S ribosomal protein S1 [Janthinobacterium sp. HH01]
gi|444791641|gb|ELX13188.1| 30S ribosomal protein S1 [Janthinobacterium sp. HH01]
Length = 562
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEP 140
+ +++ A W A ESG I G + G GGL V + FLP + + K+
Sbjct: 88 RDKAKRLASWLALEKAMESGEIVVGTVNGKVKGGLTVLTNGIRAFLP-GSLVDTRPVKDT 146
Query: 141 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFV 193
G + KVI+ + + +V S + + K + +
Sbjct: 147 TP--------FEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERQKLMETLKEGTVVT 198
Query: 194 G-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 248
G DYGAF+ L DGL H+T L +W ++ ++L G E+ KV+K D+
Sbjct: 199 GVVKNITDYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLTVGQEITAKVLKYDQ 252
Query: 249 EKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
EK+R++L +KQL +DP L + PQG + K
Sbjct: 253 EKNRVSLGVKQLGDDPWT-GLSRRYPQGTRLFGK 285
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 153 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 204
G I+ KV++ ++E ++ K D W S R G+ DYGAF+ +
Sbjct: 240 GQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVE 299
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVHVSE+ W +++ ++ GDEV V V++ID E+ RI+L +KQ +
Sbjct: 300 -----QGIEGLVHVSEMDW-TNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKA 353
Query: 263 DP 264
+P
Sbjct: 354 NP 355
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V++ +EE +++ K W+
Sbjct: 304 GLVHVSEMDWTNKNVAPNKVVQ------LGDEVEVMVLEIDEERRRISLGMKQCKANPWD 357
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
+ D G D+G FI L ++ GLVH+S++SW + ++
Sbjct: 358 DFGVTHKKGDKVRGAIKSITDFGVFIGL-----AGNIDGLVHLSDLSWTETGEEAVRRFK 412
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+ ID E+ R++L +KQLE DP
Sbjct: 413 KGDELEAIVLAIDVERERVSLGVKQLEGDPF 443
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GA I L + G + SE+S D ++D L GD V VI IDR+ I LSI
Sbjct: 467 GAVIQLS-----EEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSI 521
Query: 258 KQLEEDPLLETLEKV 272
K + E ++K+
Sbjct: 522 KAKDSAETAEAMQKM 536
>gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Moorella
thermoacetica ATCC 39073]
gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella
thermoacetica ATCC 39073]
Length = 736
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 30/188 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ + SG +G++ GGLLV + GFLP + ++ E
Sbjct: 442 WEKLEEHLASGEEIQGEVIEVVKGGLLVDV-GVRGFLPASLV---------ERGYVEDLN 491
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVGR--D 196
G + ++VI+ + K+V S K A WN V V R +
Sbjct: 492 AYLGQTLRLRVIELDRSKNKVVLSRKAILEEEYEKQRQATWNSLEVG-QVRKGIVRRLTN 550
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
+GAF+ L DGL +HVSE+SW ++ RD L+EG E+ VK++ IDRE+ +++L
Sbjct: 551 FGAFVDLGGVDGL------LHVSEISWGRVEHPRDALSEGQEIEVKILGIDREEGKVSLG 604
Query: 257 IKQLEEDP 264
KQL +P
Sbjct: 605 RKQLLPNP 612
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +G ++ G V + G L ++S + P+ ++ E G I
Sbjct: 536 EVGQVRKGIVRRLTNFGAFVDLGGVDGLLHVSEISWGR-VEHPRDALSE------GQEIE 588
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VK++ + E K+ K + W+ + R V I G+ +GAF+ +
Sbjct: 589 VKILGIDREEGKVSLGRKQLLPNPWDTAAERYPVGTIVEGKILRLAPFGAFVEVE----- 643
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GLVH+S+++ + D+++ GD + VKV+ +D++ R++LS++Q
Sbjct: 644 PGIEGLVHISQLADRHVDKPEDVVSIGDIIPVKVLGVDQQAQRMSLSLRQ 693
>gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773]
gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human
Length = 396
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 113 GGLLVRFFSLVGFLPFPQMSP-------SHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL+V + GF+P ++ K+ + + EI I+S K + A E
Sbjct: 124 GGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILSRKAVAAQE 183
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSW 223
+L V++K S VE V R D+GAF+ L DGL VHVSE+S
Sbjct: 184 RAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL------VHVSEISH 231
Query: 224 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV----IPQGLEP 279
D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++ + +G
Sbjct: 232 DRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVK 291
Query: 280 YLKSF 284
+K F
Sbjct: 292 RVKDF 296
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G V + G + ++S K P + + G + VK
Sbjct: 198 GEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDR-VKNPADVLTK------GDKVDVK 250
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
++ + E ++ S K W++ + ++ + G +D+GAF+ + L
Sbjct: 251 ILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI-----LPG 305
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P E
Sbjct: 306 IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 361
>gi|422630289|ref|ZP_16695488.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330939639|gb|EGH42945.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
Length = 456
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 27/175 (15%)
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ +G I G GG V + FLP + + + + H L G + KVI
Sbjct: 2 VVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVI 52
Query: 162 QANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
+ +++ +V S E++A+ V+ I DYGAF+ L DGL
Sbjct: 53 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGL 112
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP
Sbjct: 113 LHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 161
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V V+ +EE +++ K W
Sbjct: 197 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVMVLDIDEERRRISLGIKQCKSNPWE 250
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+S + N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 251 DFSGQFNKGDKISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 305
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+GDE+ ++ +D E+ RI+L IKQLE DP E
Sbjct: 306 KGDELDTVILSVDPERERISLGIKQLESDPFSE 338
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 70 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 128
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFV 193
++ G I VKV++ + E ++ K A+ +Y S+RV +
Sbjct: 129 IVN------VGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTN 181
Query: 194 GRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKS 251
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+
Sbjct: 182 LTDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERR 235
Query: 252 RITLSIKQLEEDP 264
RI+L IKQ + +P
Sbjct: 236 RISLGIKQCKSNP 248
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 219 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 376 SEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 415
>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
Length = 403
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G EG + GGLLV + GFLP +S + K G +
Sbjct: 110 EEGNAIEGTVTSSVRGGLLVDVGTR-GFLPASLISNRYVSD---------LKPYIGKTMK 159
Query: 158 VKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 205
+K+ + + +L+ S KD + ++K +S++ V D+ G+ ++G FI +
Sbjct: 160 LKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGG 219
Query: 206 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
DGL VH+SE+S+ + D+L G +V++KVI ID ++ RI+LSIKQ E P
Sbjct: 220 VDGL------VHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPSPF 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EGK+ G + + G + ++S H K P + G + +K
Sbjct: 198 GDVIEGKVSRLTNFGGFIDVGGVDGLVHISEISYKHVDK-PSDVLK------AGQDVKIK 250
Query: 160 VIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
VI +++ ++ S K + + + ++ +N D+F G ++GAF+ + DG+
Sbjct: 251 VIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV--ADGI-- 306
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258
GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 307 -QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|225568606|ref|ZP_03777631.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
15053]
gi|225162534|gb|EEG75153.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
15053]
Length = 228
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 28/183 (15%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W + Y E G + KI+G GG + L GF+P ++S S+ I ++
Sbjct: 30 WNVVKNYMEKGTVLPVKIEGIVNGGAIAMVEGLRGFIPASKLSLSY--------IEDLET 81
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVG-----RDY 197
L I V+VI ++ +LV S ++ + K + V + + G ++Y
Sbjct: 82 YLLKDI-EVQVIDVDQANNRLVLSAREILKEKERKEKEAKIASVKIGSVVKGTVESLQNY 140
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ R DGL +GLVHVS++S ++ +D+LN GDEV VK+I + + +I+LS+
Sbjct: 141 GAFV--RLEDGL---SGLVHVSQISQKRVKAPKDVLNTGDEVTVKIIGL--KDGKISLSM 193
Query: 258 KQL 260
K L
Sbjct: 194 KAL 196
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,332,817,467
Number of Sequences: 23463169
Number of extensions: 176449696
Number of successful extensions: 524419
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9410
Number of HSP's successfully gapped in prelim test: 2235
Number of HSP's that attempted gapping in prelim test: 494236
Number of HSP's gapped (non-prelim): 21277
length of query: 289
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 148
effective length of database: 9,050,888,538
effective search space: 1339531503624
effective search space used: 1339531503624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)