BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022938
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 72 DDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131
DDS + RQ Q + W+ R + + +GKI G N GG++ L GF+PF Q+
Sbjct: 158 DDSLILSLRQIQYELA--WERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQI 215
Query: 132 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDI 191
S S +E L I +K ++ +EE +LV S + A+ + +++ + +
Sbjct: 216 SSKSSAEE-----------LLEKEIPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSV 263
Query: 192 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
G + YGAFI + + GL+HVS++S D + DI +L GD ++V ++
Sbjct: 264 VTGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSH 317
Query: 247 DREKSRITLSIKQLEEDP 264
DRE+ R++LS K+LE P
Sbjct: 318 DRERGRVSLSTKKLEPTP 335
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + + N GG LVR L GF+P +S E +
Sbjct: 108 WERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISA-----------REAKE 156
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 157 DLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDI- 215
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 216 -----GGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +AYK+S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLTLEQAYKDSKTVV-GLINGKVKGGFTVELEDIRAFLPGSLVD----IRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFV 193
++++H L G + KVI+ +++ +V S + + ++Y++ N+ E + V
Sbjct: 141 VRETMH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIV 195
Query: 194 G------RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
DYGAF+ L DGL H+T +++W ++ +I+N GDEV++K++K D
Sbjct: 196 SGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLLETLEK 271
REK R++L +KQL +DP + E+
Sbjct: 250 REKIRVSLGLKQLSDDPWTKISER 273
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
G++ G V V G + +M ++ P K + S++ V ++
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQ------VNSVVKVMILDI 335
Query: 164 NEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K + W ++S + N VG+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITDFGIFIGLEGS-----IDGL 390
Query: 216 VHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW++ ++ +G+EV V+++D ++ RI+L IKQL+EDP
Sbjct: 391 VHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPF 441
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I G ++ G V + G L M+ K P + ++ G +
Sbjct: 190 QEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------IGDEVK 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
+K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 243 IKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ + +P +E
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWME 356
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 53 GKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEGKIQGFNG 112
G+ T+ + + + + +++ +ADW A E+G I G I G
Sbjct: 59 GEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVK 118
Query: 113 GGLLVRFFSLVGFLPF------PQMSPSH-SCKEPQKSIHEIAKGLTGSIISVKVIQANE 165
GGL V S+ FLP P SH KE + + ++ K ++S + +
Sbjct: 119 GGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV---- 174
Query: 166 EMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 224
++ + E+ A+ ++ I DYGAF+ L DGL H+T L +W
Sbjct: 175 -LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDL------AWR 227
Query: 225 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLK 282
++ ++L G EV KV+K D+EK R++L +KQL EDP L + PQG + K
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V +++ +E +++ K W
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQ------LGDEVEVMILEIDEGRRRISLGMKQCQANPWE 356
Query: 181 KYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILN 234
++++ N D G D+G F+ L P G+ GLVH+S++SW + ++
Sbjct: 357 EFAANHNKGDKISGAVKSITDFGVFVGL--PGGI---DGLVHLSDLSWTESGEEAVRKYK 411
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+G+EV V+ ID EK RI+L IKQLE DP
Sbjct: 412 KGEEVEAVVLAIDVEKERISLGIKQLEGDPF 442
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G + +G ++ G V + G L ++ K P + + G +
Sbjct: 191 QEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLA-WRRVKHPSEVLE------VGQEVE 243
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
KV++ ++E +++ K + W+ + R G+ DYGAF+ +
Sbjct: 244 AKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIE----- 298
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ + +P E
Sbjct: 299 QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 270
+ G + SE + D ++D+ L EGDEV ++ +DR+ I LS+K + E L
Sbjct: 474 EVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALN 533
Query: 271 KV 272
V
Sbjct: 534 SV 535
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+ES + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWLMLEKAYEESATVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 234 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 342 ISLGLKQCKANP 353
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ ++V I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D I+D +++ GDE+ K +DR+ ++LSI+
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ R + ++ N GG LVR L GF+P +S + KE
Sbjct: 109 WERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIS-TRKAKE---------- 157
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI
Sbjct: 158 DLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFI--- 214
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ ++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 215 ---DIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R A +AY+++ + G I G GG V + FLP + +
Sbjct: 85 SREKAKRHEAWITLEKAYEDAETVT-GVINGKVKGGFTVELNGIRAFLPGSLVD----VR 139
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVN 187
+ ++H L G + KVI+ +++ +V S E+D + +
Sbjct: 140 PVRDTLH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Query: 188 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
V+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKF 248
Query: 247 DREKSRITLSIKQLEEDPLLETLEKVIPQG 276
DRE++R++L +KQL EDP + + K P+G
Sbjct: 249 DRERTRVSLGLKQLGEDPWV-AIAKRYPEG 277
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 179 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 231
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G +G ++ G V + G L M+ K P + ++ G I+
Sbjct: 190 QEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSEIVN------VGDEIT 242
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE----- 297
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ + +P
Sbjct: 298 EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ G EGKI+ G+ + + G + +S + + +E ++ E
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEE---AVREYK 410
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAF 200
KG I+ V+Q + E +++ K + +++ V + I G+ GA
Sbjct: 411 KG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGAT 467
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+ L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++
Sbjct: 468 VEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 522
Query: 261 EE 262
+E
Sbjct: 523 DE 524
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 50 CPVGKFSTNAAKI---TPTTVNPILDDSSDANNRQSQSRSSA----DW-KAARAYKESGF 101
PV +F ++ TVN LD D SR A W + +AY+E
Sbjct: 48 IPVAEFLNAQGELEIQVGDTVNVALDAVEDGFGETKLSREKAVRHESWIELEKAYEEKAT 107
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
+ G I G GG V + FLP + + +E A L G + KVI
Sbjct: 108 VI-GLIXGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVI 157
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYGAFIHLRFPDGL 209
+ +++ +V S + + ++ S +E++ G +YGAF+ L DGL
Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL 217
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
H+T +++W ++ +I+N GDEV VKV+K D++++R++L +KQL +DP
Sbjct: 218 LHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 105 GKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
GK+ G V V G + +M ++ P K + G + V V++
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS------LGDTVEVMVLEI 335
Query: 164 NEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGL 215
+EE +++ K W +++ N D G+ D+G FI L + GL
Sbjct: 336 DEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGL 390
Query: 216 VHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
VH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEEDP
Sbjct: 391 VHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEEDPF 441
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + +GK+Q G V + G + Q+S SH ++P + E G +
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSH-VEKPSDVVEE------GQEVK 238
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
VKV+ + + +++ S KD + WN+ +V D+ G +GAF+ + L
Sbjct: 239 VKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----L 293
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVH+S++S I ++L EG V+VKV+ ++ + RI+LS+++LEE P
Sbjct: 294 PGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W+ E+ ++E +++ GGL+V + GF+P + +H ++
Sbjct: 92 WEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVEAHFVED--------FT 141
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 197
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+
Sbjct: 142 DYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDF 201
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
GAF+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSI
Sbjct: 202 GAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSI 255
Query: 258 KQLEEDPLLETLEKVIP 274
K P + EKV P
Sbjct: 256 KDTLPGPWNQIGEKVKP 272
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 48 NLCPVGKFSTNAAKIT---PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESG 100
+ PV +F ++T V+ LD D SR A W A +
Sbjct: 46 GVIPVEQFYNEQGELTIKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAD 105
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ +G I G GG V + FLP + + + + H L G + KV
Sbjct: 106 EVVKGVINGKVKGGFTVDVNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E++A+ V+ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWV-A 269
Query: 269 LEKVIPQG 276
++ P+G
Sbjct: 270 IKARYPEG 277
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 124 GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WN 180
G + +M ++ P K + G + V+V+ +EE +++ K W
Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQ------VGDEVEVQVLDIDEERRRISLGIKQCKSNPWE 355
Query: 181 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILN 234
+SS+ N D G D+G FI L DG + GLVH+S++SW+ + ++
Sbjct: 356 DFSSQFNKGDRISGTIKSITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFK 410
Query: 235 EGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+GDE+ ++ +D E+ RI+L IKQLE+DP
Sbjct: 411 KGDELETVILSVDPERERISLGIKQLEDDPF 441
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G ++ G V + G L M+ K P +
Sbjct: 175 EAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-IKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I VKV++ + E ++ K + W +R + R
Sbjct: 234 IVN------VGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ R
Sbjct: 288 TDYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRR 341
Query: 253 ITLSIKQLEEDP 264
I+L IKQ + +P
Sbjct: 342 ISLGIKQCKSNP 353
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 272 VIPQGLE 278
+ Q +E
Sbjct: 534 LRKQEVE 540
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
R+ R A +A+++S + G I G GG V + FLP + +
Sbjct: 86 REKAKRHEAWLILEKAHEKSETVI-GIINGKVKGGFTVELNDIRAFLPGSLVD----VRP 140
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNV 188
+ +IH L G + KVI+ +++ +V S E+D + ++V
Sbjct: 141 VRDTIH-----LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHV 195
Query: 189 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247
+ I DYGAF+ L DGL H+T +++W ++ +I+N GDE+ +K++K D
Sbjct: 196 KGIVKNLTDYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFD 249
Query: 248 REKSRITLSIKQLEEDPLL 266
RE++R++L +KQL EDP +
Sbjct: 250 RERTRVSLGLKQLGEDPWI 268
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 254
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 255 LSIKQLEEDPL 265
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I++K+++ + E ++ K + W S R E GR
Sbjct: 234 IVN------VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNL 287
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++ D V V V+ ID E+ R
Sbjct: 288 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRR 341
Query: 253 ITLSIKQLEEDPLLE 267
I+L +KQ + +P E
Sbjct: 342 ISLGLKQCKINPWKE 356
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 39/250 (15%)
Query: 50 CPVGKFSTNAAKITPTTVNPILDDSSDAN---------NRQSQSRSSADWKAARAYKESG 100
PV +F NA + V +D + DA +R+ R A +A+++S
Sbjct: 48 IPVEQFK-NAQGLLDVKVGDQIDVALDAIEDGFGETLLSREKAKRHEAWLILEQAHEKSE 106
Query: 101 FIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKV 160
+ G I G GG V + FLP + + + +IH L G + KV
Sbjct: 107 TVI-GIINGKVKGGFTVELNEIRAFLPGSLVD----VRPVRDTIH-----LEGKELEFKV 156
Query: 161 IQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDG 208
I+ +++ +V S E+D + + ++ I DYGAF+ L DG
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDG 216
Query: 209 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 268
L H+T +++W ++ +I+N GDE+ VK++K D+E++R++L +KQL EDP +
Sbjct: 217 LLHIT------DMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDPWI-A 269
Query: 269 LEKVIPQGLE 278
+ P+G++
Sbjct: 270 ISNRYPEGIK 279
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIA 148
W A G G++ G V V G + +M ++ P K +
Sbjct: 267 WIAISNRYPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV---- 322
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--SRVNVEDIFVG------RDYGAF 200
+I+ V V+ +EE +++ K N + S + + I V D+G F
Sbjct: 323 --AVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIF 380
Query: 201 IHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
I L+ + GLVH+S++SW + ++ +GDE+ V+++D E+ RI+L IKQ
Sbjct: 381 IGLKGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQ 435
Query: 260 LEEDPL 265
LEEDP
Sbjct: 436 LEEDPF 441
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S +SA+ + G +G ++ G V + G L M+ K P +
Sbjct: 175 ESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 233
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR 195
++ G I+VK+++ ++E ++ K A+ N+Y + + GR
Sbjct: 234 IVN------VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLS----GR 283
Query: 196 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDR 248
DYG F+ + + GLVHVSE+ W ++I ++ + V V V+ ID
Sbjct: 284 VTNLTDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVAVNNIVDVIVLDIDE 337
Query: 249 EKSRITLSIKQLEEDPLLE 267
E+ RI+L +KQ + +P E
Sbjct: 338 ERRRISLGLKQCKINPWQE 356
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164
G I G GG V + FLP + + + + H L G + KVI+ +
Sbjct: 5 GVINGKVKGGFTVELNGIRAFLPGSLVD----VRPVRDTTH-----LEGKELEFKVIKLD 55
Query: 165 EEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHL 212
++ +V S E+D + + V+ I DYGAF+ L DGL H+
Sbjct: 56 QKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHI 115
Query: 213 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272
T +++W ++ +I+N GDE+ VKV+K DRE++R++L +KQL EDP + + K
Sbjct: 116 T------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWV-AIAKR 168
Query: 273 IPQG 276
P+G
Sbjct: 169 YPEG 172
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 227 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 281
Query: 212 LTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 265
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 282 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 336
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
+S SSA+ + G +G ++ G V + G L M+ K P +
Sbjct: 70 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR-VKHPSE 128
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G I+VKV++ + E ++ K + W + R GR
Sbjct: 129 IVN------VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNL 182
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ R
Sbjct: 183 TDYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRR 236
Query: 253 ITLSIKQLEEDP 264
I+L +KQ + +P
Sbjct: 237 ISLGLKQCKSNP 248
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 102/241 (42%), Gaps = 56/241 (23%)
Query: 67 VNPILDDSSDANNRQ----------------------SQSRSSADWKAARAYKESGFIYE 104
V PI D SS N RQ +SRS A + KE G I E
Sbjct: 154 VRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKE-GMILE 212
Query: 105 GKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHSCKEPQKSIHEIAKGLTGSIISV 158
G ++ G + S+ G L +S PS + QK + V
Sbjct: 213 GTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQK-------------VKV 259
Query: 159 KVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLY 210
VI+ NEE K++ K W K V G+ DYG FI L+ DGL
Sbjct: 260 MVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--DGL- 316
Query: 211 HLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL++
Sbjct: 317 --EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFA 374
Query: 270 E 270
E
Sbjct: 375 E 375
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 62 ITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKES-----------GFIYEGKIQGF 110
++P P + D D +++ S +A KE G +G I G
Sbjct: 72 LSPAHKLPEIGDLVDVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTIFGR 131
Query: 111 NGGGLLVRFFSLVGFLPFPQMS------PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQ 162
GG V +V FLP Q+ PS + ++P K I + K L ++S + I
Sbjct: 132 VKGGFTVDLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFK-ILSMDKKLGNIVVSRRAI- 189
Query: 163 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEV 221
+++ +D + +K + +E DYGAFI L DGL HLT ++
Sbjct: 190 ----LEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLT------DI 239
Query: 222 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
SW + ++L +V+V VIK + E RI+L +KQL+ +P E +++ P G
Sbjct: 240 SWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNP-WEKIKEEFPVG 293
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ + G GK+ F G+ + L G + ++S S + P+K++
Sbjct: 283 WEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTL---- 338
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDYGAF 200
G + V++ + E ++ S K N K++ V + D+G F
Sbjct: 339 --TIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETNPVGTVIKAPIRNITDFGIF 396
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L +L G++H +++W D ++ +GDEV KV+ I+ EK +I+L IKQ
Sbjct: 397 VALS-----DNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQ 451
Query: 260 LEEDP 264
L +P
Sbjct: 452 LTPNP 456
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 79 NRQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCK 138
+R+ R+ A + +AYK +G + +G I GG V S+ FLP + +
Sbjct: 81 SREKARRAKAWSELEKAYK-AGEMVKGVIIERVKGGFTVDLNSVRAFLP-GSLVDVKPVR 138
Query: 139 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGR- 195
+P L I K+I+ ++ +V S + + + S+ + +E++ G+
Sbjct: 139 DPGY--------LEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 190
Query: 196 ---------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 246
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K
Sbjct: 191 IKGVIKNITDYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKF 244
Query: 247 DREKSRITLSIKQLEEDP 264
DR+K R++L +KQL +DP
Sbjct: 245 DRDKKRVSLGMKQLADDP 262
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLV-GFLPFPQMSPSHSCKEPQKSIHEIAK 149
K R Y + ++ GK+ G V+ V G + ++ ++ P K +
Sbjct: 265 KIERRYPVNSRVF-GKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQ---- 319
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFI 201
+G + V V++ +EE +++ K W +++ + ++ G+ D+G FI
Sbjct: 320 --SGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFI 377
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+ RI+L IKQ
Sbjct: 378 GLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIKQ 431
Query: 260 LEEDPLLETLE 270
LE DP +E +E
Sbjct: 432 LEGDPFMEFVE 442
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK 142
++ +SA+ +A + G +G I+ G V + G L M+ K P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGR-VKHPSD 229
Query: 143 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR---- 195
++ G + VKV++ + + K++ K D W K R V G+
Sbjct: 230 LLN------VGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNI 283
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSR 252
DYG F+ L + GLVH SE+ W ++I ++ G+EV V V++ID E+ R
Sbjct: 284 TDYGCFVKLE-----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRR 337
Query: 253 ITLSIKQLEEDPLLETLEK 271
I+L IKQ + +P E EK
Sbjct: 338 ISLGIKQCKRNPWQEFAEK 356
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHS 136
+SRS A + KE G + EG ++ G + S+ G L +S PS
Sbjct: 189 ESRSEARDEMLSKIKE-GMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEV 247
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFV 193
+ QK + V VI+ +E+ K++ K W V
Sbjct: 248 LEFNQK-------------VKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKKMT 294
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKID 247
G+ DYG FI LR DGL GLVH SE+SW Q+ R L G EV V+++D
Sbjct: 295 GKVTNFADYGVFIELR--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVD 349
Query: 248 REKSRITLSIKQLEEDPLLETLE 270
EK R++LSIKQ +E+PL++ E
Sbjct: 350 TEKHRVSLSIKQCQENPLIKFAE 372
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 78 NNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS- 132
N R SR A W G +G I G GG V +V FLP Q+
Sbjct: 92 NGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDV 151
Query: 133 -----PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
P+ + K+P K I + K L ++S + I +++ +D + +K
Sbjct: 152 RPIKDPTSIMNIKQPFK-ILSMDKKLDNIVVSRRAI-----LEESRSEARDEMLSKIKEG 205
Query: 186 VNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
+ +E DYGAFI L DGL HLT ++SW + ++L +V+V VI
Sbjct: 206 MVLEGTVKNITDYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVI 259
Query: 245 KIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
K D + RI+L IKQL+ +P E +++ P G
Sbjct: 260 KFDEKTKRISLGIKQLDSNP-WEAIKEEFPVG 290
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIH 145
S W+A + G GK+ F G+ + L G + ++S S + P+K++
Sbjct: 277 SNPWEAIKEEFPVGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTL- 335
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDY 197
G + V++ + E ++ S K N K++ V I D+
Sbjct: 336 -----TIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLIKFAENNPVGTIIKAPIRNITDF 390
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++L
Sbjct: 391 GIFVALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLG 445
Query: 257 IKQLEEDPLLE 267
+KQL +P E
Sbjct: 446 VKQLSPNPYQE 456
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 34/245 (13%)
Query: 49 LCPVGKF-STNAAKITPTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGFIY 103
+ P+ +F ++ + V LD + D + SR A W+ A+ E G I
Sbjct: 78 VIPMSEFIDSSEGLVLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIV 137
Query: 104 EGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163
+G+I GGL+V + FLP Q+ K I + G + K+++
Sbjct: 138 KGQITRKVKGGLIVDI-GMEAFLPGSQID--------NKKIKNL-DDYVGKVCEFKILKI 187
Query: 164 NEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGLYH 211
N E + +V S ++ + + S+ +E I +G D+G F+ L DG+
Sbjct: 188 NVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDL---DGI-- 242
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
GL+H+++++W I+ +++ E+ V ++ +D+EK R+ L +KQ E +P E +EK
Sbjct: 243 -DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDIEK 300
Query: 272 VIPQG 276
P G
Sbjct: 301 KYPPG 305
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI + + GL+H+SE+SW I D +++N+GDEV V+ I +++ +I+L
Sbjct: 318 YGAFIEIE-----EGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISL 372
Query: 256 SIKQLEEDPLLETLEKVIPQGL 277
+KQ E +P + +E+ P GL
Sbjct: 373 GLKQTERNP-WDNIEEKYPIGL 393
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+YGAF+ L P + GL+H+S++SW + ++ +G+ V ++ +D+E +IT
Sbjct: 404 NYGAFVELE-PG----IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKIT 458
Query: 255 LSIKQLEEDPLLETLEKVIPQG 276
L +KQL +P E +E + P G
Sbjct: 459 LGVKQLSSNPWNE-IEAMFPAG 479
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
G+ + ++ ++E KK+ K WN+ + + G +GAF+ L+
Sbjct: 440 GNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQ 499
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ GL+HVSE+S I DI++ G+ V KVIK+D + +++LS+K+
Sbjct: 500 -----NGIEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKE 549
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHS 136
+SRS A + KE G I EG ++ G + S+ G L +S PS
Sbjct: 189 ESRSEARDEMLSKIKE-GMILEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEV 247
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFV 193
+ QK + V VI+ +E+ K++ K W+ V
Sbjct: 248 LEFNQK-------------VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMT 294
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKID 247
G+ DYG F+ L+ DGL GLVH SE+SW Q+ R +L G EV V+++D
Sbjct: 295 GKVTNFADYGVFLELK--DGL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVD 349
Query: 248 REKSRITLSIKQLEEDPLLETLE 270
EK R++LSIKQ +E+PL++ E
Sbjct: 350 TEKHRVSLSIKQCQENPLIKFAE 372
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 78 NNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS- 132
N R SR A W G +G I G GG V +V FLP Q+
Sbjct: 92 NGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDV 151
Query: 133 -----PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
P+ + K+P K I + K L ++S +VI EE + +D + +K
Sbjct: 152 RPIKDPTSIMNIKQPFK-ILSMDKKLGNIVVSRRVIL--EESRS---EARDEMLSKIKEG 205
Query: 186 VNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
+ +E + DYGAFI L DGL HLT ++SW + ++L +V+V VI
Sbjct: 206 MILEGVVKNITDYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVI 259
Query: 245 KIDREKSRITLSIKQLEEDP 264
K D + RI+L IKQL+ +P
Sbjct: 260 KFDEKTKRISLGIKQLDSNP 279
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVS 443
Query: 255 LSIKQLEEDP 264
L IKQL +P
Sbjct: 444 LGIKQLSPNP 453
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 20/180 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + GK+ G + + G + ++S H KS+ + G I VK
Sbjct: 194 GDVVTGKVARITSFGAFIDLGGVDGLVHLTELS--HERNVSPKSVVTV-----GEEIEVK 246
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 211
++ NEE ++ S K V W+ ++ D+ G D+GAF+ + L
Sbjct: 247 ILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV-----LPG 301
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
+ GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P E +K
Sbjct: 302 IDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQK 361
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHS 136
+SRS A + KE G + EG ++ G + S+ G L +S PS
Sbjct: 189 ESRSEARDEMLSKIKE-GIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEV 247
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFV 193
+ QK + V VI+ +E+ K++ K W+ V
Sbjct: 248 LEFNQK-------------VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMT 294
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKID 247
G+ DYG F+ L+ DGL GLVH SE+SW Q+ R +L G EV V+++D
Sbjct: 295 GKVTNFADYGVFLELK--DGL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVD 349
Query: 248 REKSRITLSIKQLEEDPLLETLE 270
EK R++LSIKQ +E+PL++ E
Sbjct: 350 TEKHRVSLSIKQCQENPLIKFAE 372
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 78 NNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS- 132
N R SR A W G +G I G GG V +V FLP Q+
Sbjct: 92 NGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDV 151
Query: 133 -----PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
P+ + K+P K I + K L ++S +VI EE + +D + +K
Sbjct: 152 RPIKDPTSIMNIKQPFK-ILSMDKKLGNIVVSRRVIL--EESRS---EARDEMLSKIKEG 205
Query: 186 VNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
+ +E + DYGAFI L DGL HLT ++SW + ++L +V+V VI
Sbjct: 206 IVLEGVVKNITDYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVI 259
Query: 245 KIDREKSRITLSIKQLEEDP 264
K D + RI+L IKQL+ +P
Sbjct: 260 KFDEKTKRISLGIKQLDSNP 279
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 87 SADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIH 145
S W A + G GK+ F G+ + L G + ++S S + P+K +
Sbjct: 277 SNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSNQNPRKML- 335
Query: 146 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDY 197
G + V++ + E ++ S K N K++ + I D+
Sbjct: 336 -----TIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLIKFAENNPIGTIIKAPIRNITDF 390
Query: 198 GAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256
G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++L
Sbjct: 391 GIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLG 445
Query: 257 IKQLEEDP 264
IKQL +P
Sbjct: 446 IKQLLPNP 453
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 34/247 (13%)
Query: 47 RNLCPVGKFSTNAAKIT-PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGF 101
+ P+ +F ++ +T V LD + D + SR A W+ A+ E G
Sbjct: 76 EGVIPMSEFIDSSEGLTVGAEVEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS 135
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
I +G+I GGL+V + FLP Q+ K I + G + K++
Sbjct: 136 IVKGQITRKVKGGLIVDI-GMEAFLPGSQID--------NKKIKNLDD-YVGKVCEFKIL 185
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGL 209
+ N + + +V S ++ + + S+ +E I +G D+G F+ L DG+
Sbjct: 186 KINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDL---DGI 242
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GL+H+++++W I+ +++ E+ V ++ +D+EK R+ L +KQ E +P E +
Sbjct: 243 ---DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDI 298
Query: 270 EKVIPQG 276
EK P G
Sbjct: 299 EKKYPPG 305
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI + + GL+HVSE+SW I D +++N+GDEV V V+ I +++ +I+L
Sbjct: 318 YGAFIEIE-----EGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISL 372
Query: 256 SIKQLEEDPLLETLEKVIPQGL 277
+KQ + +P + +E+ P GL
Sbjct: 373 GLKQTKHNP-WDNIEEKYPIGL 393
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 19/119 (15%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-VGRD----------YGAFI 201
G+ + ++ ++E KK+ K N + +E +F VG D +GAF+
Sbjct: 440 GNTVEAVILSVDKESKKITLGVKQLTPNPWDE---IEVMFPVGSDISGVVTKITAFGAFV 496
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
L+ + GL+HVSE+S I D+L+ GD+V KVIK+D + +++LSIK+
Sbjct: 497 ELQ-----NGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+YGAF+ L + GL+H+S++SW + ++ +G+ V ++ +D+E +IT
Sbjct: 404 NYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKIT 458
Query: 255 LSIKQLEEDPLLETLEKVIPQG 276
L +KQL +P E +E + P G
Sbjct: 459 LGVKQLTPNPWDE-IEVMFPVG 479
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK R + + +I+GFN GG++V + GF+P ++
Sbjct: 104 WKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSS--------- 154
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGL 209
T I +K++ E+ L+ S + A+ + SS ++ VG I+ P GL
Sbjct: 155 --TNKFIKLKLLNVEEKSNNLILSHRRALIAQASS-----NLIVGNIIEGVINQITPYGL 207
Query: 210 Y----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
+ +L GLVH+SE++ ++ I GD ++ +I +D+++ R++LS+K L+
Sbjct: 208 FIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 34/247 (13%)
Query: 47 RNLCPVGKFSTNAAKIT-PTTVNPILDDSSDANNRQSQSRSSA----DWKAARAYKESGF 101
+ P+ +F ++ ++ V LD + D + SR A W+ A+ E G
Sbjct: 76 EGVIPMSEFIDSSEGLSVGAEVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS 135
Query: 102 IYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161
I +G+I GGL+V + FLP Q+ K I + G + K++
Sbjct: 136 IVKGQITRKVKGGLIVDI-GMEAFLPGSQID--------NKKIKNLDD-YVGKVCEFKIL 185
Query: 162 QANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHLRFPDGL 209
+ N + + +V S ++ + + S+ +E I +G D+G F+ L DG+
Sbjct: 186 KINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDL---DGI 242
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
GL+H+++++W I+ +++ E+ V ++ +D+EK R+ L +KQ E +P E +
Sbjct: 243 ---DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDI 298
Query: 270 EKVIPQG 276
EK P G
Sbjct: 299 EKKYPPG 305
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 197 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
YGAFI + + GL+HVSE+SW I D +++N+GDEV V V+ I +++ +I+L
Sbjct: 318 YGAFIEIE-----EGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISL 372
Query: 256 SIKQLEEDPLLETLEKVIPQGL 277
+KQ E +P + +E+ P GL
Sbjct: 373 GLKQTEHNP-WDNIEEKYPIGL 393
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 19/119 (15%)
Query: 153 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-VGRD----------YGAFI 201
G+ + ++ ++E KK+ K N + +E +F VG D +GAF+
Sbjct: 440 GNTVEAVILSVDKESKKITLGVKQLTPNPWDE---IEAMFPVGSDISGIVTKITAFGAFV 496
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
L+ + GL+HVS++S I DIL+ GD+V KVIK+D + +++LSIK+
Sbjct: 497 ELQ-----NGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKEF 550
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
+YGAF+ L + GL+H+S++SW + ++ +G+ V ++ +D+E +IT
Sbjct: 404 NYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKIT 458
Query: 255 LSIKQLEEDPLLETLEKVIPQG 276
L +KQL +P E +E + P G
Sbjct: 459 LGVKQLTPNPWDE-IEAMFPVG 479
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 80 RQSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKE 139
RQ Q + S W+ +ESG E + G N GG++ L GF+P + +
Sbjct: 98 RQLQIQQS--WENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNM-- 153
Query: 140 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR---- 195
L G ++ +++AN++ KLV +++ + ++ +I+ G+
Sbjct: 154 ---------DALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKI 204
Query: 196 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254
YG F+ + +TGL+HVS+VS + + + G + V V +ID K+RI+
Sbjct: 205 QPYGVFVEIE------GVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRIS 258
Query: 255 LSIKQLEEDP--LLETLEKVI 273
LS + LE P L+E ++++
Sbjct: 259 LSTRILETYPGELVEKFDEMM 279
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 31/188 (16%)
Query: 113 GGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172
GGL+V + GF+P ++ Q I +VI+ + +L+
Sbjct: 157 GGLIVDVNGVRGFVPASMVAERFVSDLNQ---------FKNKDIKAQVIEIDPANARLIL 207
Query: 173 SEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSE 220
S K + + S+++V ++ G D+GAF+ L DGL VHVSE
Sbjct: 208 SRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGL------VHVSE 261
Query: 221 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV----IPQG 276
+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++ + +G
Sbjct: 262 ISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEG 321
Query: 277 LEPYLKSF 284
+K F
Sbjct: 322 TVKRVKDF 329
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 100 GFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVK 159
G + EG + G V + G + ++S K P + + G + VK
Sbjct: 231 GEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDR-VKNPADVLTK------GDKVDVK 283
Query: 160 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 211
++ + E ++ S K W++ + ++ + G +D+GAF+ + L
Sbjct: 284 ILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI-----LPG 338
Query: 212 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 339 IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
WK R + I+GFN GG+++ + GF+P + ++
Sbjct: 104 WKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQ---------- 153
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 204
I +K++ E+ L+ S + A+ ++ SS + V +I G YG FI +
Sbjct: 154 -FNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG 212
Query: 205 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260
+L GLVH+SE++ ++ I GD ++ +I +D+++ R++LS+K L
Sbjct: 213 ------NLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EG+++ G V + G L ++S ++P + G I
Sbjct: 482 EEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGR-VEKPADVLK------IGDKIK 534
Query: 158 VKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V V+ ++E KKL S K WN + V + +G+ D+GAF+ L P
Sbjct: 535 VYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLE-PG-- 591
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
+ GLVH+SE+S I D LN G+E++ K++++ E+ +I LSI+++EE
Sbjct: 592 --VDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVEE 642
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 175 KDAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 233
++ VWNK VE ++ D+GAF+ + DGL +HVSE+SW ++ D+L
Sbjct: 474 EETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGL------LHVSEISWGRVEKPADVL 527
Query: 234 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 271
GD+++V V+ +D+E +++LS+K+L E+P EK
Sbjct: 528 KIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEK 565
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAK 149
W +E G + K+ G N GG+ L F+P ++
Sbjct: 105 WTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDS---------- 154
Query: 150 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGL 209
L G ++V ++ N KKLV SE+ A + V + G+ G F D L
Sbjct: 155 -LKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVD-L 212
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269
T L+ ++++S + D+ I GD ++ V+ ID K RI+LS K LE P E L
Sbjct: 213 GGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHP-GEIL 271
Query: 270 EKV 272
E V
Sbjct: 272 ENV 274
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 83 QSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS------PSHS 136
+SRS A + KE G + EG ++ G + S+ G L +S PS
Sbjct: 189 ESRSEARDEMLSKIKE-GMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEV 247
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFV 193
QK + V VI+ +E+ K++ K W V
Sbjct: 248 LDFNQK-------------VKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQMT 294
Query: 194 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKID 247
G+ DYG FI L+ DGL GLVH SE+SW Q+ R L G EV V+++D
Sbjct: 295 GKVTNFADYGVFIELK--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVD 349
Query: 248 REKSRITLSIKQLEEDPLLETLE 270
EK R++LSIKQ +E+PL + E
Sbjct: 350 TEKHRVSLSIKQCQENPLTKFAE 372
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 26/212 (12%)
Query: 78 NNRQSQSRSSAD----WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS- 132
N R SR A W G +G I G GG V +V FLP Q+
Sbjct: 92 NGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDV 151
Query: 133 -----PSH--SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR 185
P+ + K+P K I + K L ++S + I +++ +D + +K
Sbjct: 152 RPIKDPTSIMNIKQPFK-ILSMDKKLGNIVVSRRAI-----LEESRSEARDEMLSKIKEG 205
Query: 186 VNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 244
+ +E DYGAFI L DGL HLT ++SW + ++L+ +V+V VI
Sbjct: 206 MVLEGTVKNITDYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLDFNQKVKVMVI 259
Query: 245 KIDREKSRITLSIKQLEEDPLLETLEKVIPQG 276
K D + RI+L IKQL+ +P E +++ P G
Sbjct: 260 KFDEKNKRISLGIKQLDSNP-WEAIKEEFPVG 290
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+A + G GK+ F G+ + L G + ++S S + P+K++
Sbjct: 280 WEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTL---- 335
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWN---KYSSRVNVEDIFVG-----RDYGAF 200
G + V++ + E ++ S K N K++ V I D+G F
Sbjct: 336 --TIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLTKFAENNPVGTIIKAPIRNITDFGIF 393
Query: 201 IHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259
+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++L IKQ
Sbjct: 394 VALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQ 448
Query: 260 LEEDPLLE 267
L +P E
Sbjct: 449 LSPNPYQE 456
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 21/193 (10%)
Query: 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM--------S 132
+ ++R W+ E+G EG I GG V V FLP Q+ +
Sbjct: 92 REKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVT 151
Query: 133 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 192
P +P + I ++ K ++S + + EE + SE V N +V VE +
Sbjct: 152 PLMHNPQPFE-ILKMDKRRGNIVVSRRTVL--EESRAEQRSE--IVQNLEEGQV-VEGVV 205
Query: 193 VG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
DYGAF+ L DGL +HV++++W + +ILN G +V+V++I+I++E
Sbjct: 206 KNITDYGAFVDLGGIDGL------LHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETH 259
Query: 252 RITLSIKQLEEDP 264
RI+L +KQLE DP
Sbjct: 260 RISLGMKQLESDP 272
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 254
++G FI L DG + G+VH+S++ W+ + + + N+GD VR V+ +D +K RI+
Sbjct: 382 EFGLFIGL---DG--DVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERIS 436
Query: 255 LSIKQLEEDPLLET 268
L IKQL D + E
Sbjct: 437 LGIKQLGRDAVGEA 450
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
E G + EG ++ G V + G L M+ P + ++ G +
Sbjct: 196 EEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMA-WRRVNHPSEILN------IGQQVK 248
Query: 158 VKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGL 209
V++I+ N+E MK+L D + KY + DYGAF+ L
Sbjct: 249 VQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELE----- 303
Query: 210 YHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
+ GL+H+SE+SW +++ IL+ EV V V+++D K RI+L +KQ E+P
Sbjct: 304 PGIEGLIHISEMSW-TKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENP 359
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--------FPQMSPSHSCKEPQ 141
W A KE +G + GGL++ L GFLP + P + KE +
Sbjct: 113 WGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQP-YIGKEIE 170
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFI 201
I E+ K ++S + E+ + V SE K + R V V ++GAF+
Sbjct: 171 AKIIELDKNRNNVVLSRRAWL--EQTQSEVRSEFLNNLQKGTIRKGVVSSIV--NFGAFV 226
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L DGL VHVSE+SW I +++ GDEV V+V+ +D ++ R++LS+K +
Sbjct: 227 DLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQ 280
Query: 262 EDP 264
EDP
Sbjct: 281 EDP 283
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G + G V + G + ++S H P + + G ++
Sbjct: 207 QKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKH-IDHPSEVVQ------VGDEVT 259
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V+ + + +++ S K + W ++ + I G+ +GAF+ R +G+
Sbjct: 260 VEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV--RVEEGI 317
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 263
GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 318 ---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|B6J6S7|PNP_COXB1 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuK_Q154) GN=pnp PE=3 SV=1
Length = 696
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>sp|P80870|GS13_BACSU General stress protein 13 OS=Bacillus subtilis (strain 168) GN=yugI
PE=1 SV=3
Length = 130
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
+++ V ++ G+ YGAF+ L GLVH+SEV+ ++DI + L+ GD
Sbjct: 2 AAKFEVGSVYTGKVTGLQAYGAFVALD-----EETQGLVHISEVTHGFVKDINEHLSVGD 56
Query: 238 EVRVKVIKIDREKSRITLSIKQLEEDP 264
EV+VKV+ +D EK +I+LSI+ + P
Sbjct: 57 EVQVKVLAVDEEKGKISLSIRATQAAP 83
>sp|Q83D87|PNP_COXBU Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=pnp PE=3 SV=1
Length = 696
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9ND62|PNP_COXBR Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=pnp PE=3 SV=1
Length = 696
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9KFK6|PNP_COXBN Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=pnp PE=3 SV=1
Length = 696
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>sp|B6J0K5|PNP_COXB2 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuG_Q212) GN=pnp PE=3 SV=1
Length = 696
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 256 SIKQLE 261
S+KQ++
Sbjct: 691 SMKQID 696
>sp|Q3IJ73|PNP_PSEHT Polyribonucleotide nucleotidyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=pnp PE=3 SV=1
Length = 708
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 32/155 (20%)
Query: 130 QMSPS-HSCKEPQKSIHE-IAKG---------LTGSIISVKVIQANEEMKKLVFSEKDAV 178
Q +P ++ K PQK I E I KG TG+ I + ++ K+ ++ ++
Sbjct: 552 QFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEI----GDDGTIKIAATDGESA 607
Query: 179 WNKYS------SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 227
N S + + V I+ G+ D+GAF+++ L GLVH+S++S + +
Sbjct: 608 ANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNI-----LPGKDGLVHISQISTERVN 662
Query: 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262
++ D L+EG EV+VKV+++DR+ R+ LSIK+ E
Sbjct: 663 NVTDHLSEGQEVKVKVLEVDRQ-GRVRLSIKEAME 696
>sp|A1WXU7|PNP_HALHL Polyribonucleotide nucleotidyltransferase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=pnp PE=3 SV=1
Length = 702
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 58/86 (67%), Gaps = 11/86 (12%)
Query: 183 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 237
++ V V ++ G+ D+GAF+++ L GLVH+S++S + ++++ D L+EGD
Sbjct: 623 TADVEVGKVYDGKVAKLMDFGAFVNI-----LPGRDGLVHISQISNNRVENVADELSEGD 677
Query: 238 EVRVKVIKIDREKSRITLSIKQLEED 263
VRVKV+++DR+ RI LS+K +EE+
Sbjct: 678 SVRVKVLEVDRQ-GRIRLSMKAVEEE 702
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 89/178 (50%), Gaps = 28/178 (15%)
Query: 99 SGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISV 158
SG +++ ++ GGL+V + GF+P + H ++ G ++V
Sbjct: 102 SGHVFDVTVKDIVNGGLVVDL-GVRGFIP-ASLVEVHYVED--------FTDYKGKTLAV 151
Query: 159 KVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFIHLRFP 206
K+++ + E +++ S K V + S+ + D+ G D+GAF+++
Sbjct: 152 KIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGV 211
Query: 207 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 264
DGL VH+S++S + ++ ++L +G +V+VKV+ +D + RI+LSIK + P
Sbjct: 212 DGL------VHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGP 263
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 91 KAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKG 150
K A + + G + EG +Q G V + G + Q+S ++P + + +
Sbjct: 180 KEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQIS-HERVEQPSEVLEQ---- 234
Query: 151 LTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIH 202
G + VKV+ + + +++ S K A W + V DI G +GAF+
Sbjct: 235 --GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAFVE 292
Query: 203 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ-LE 261
+ L + GLVHVS+++ +++ ++L G EV+VKV+++ + RI+LSIK+ E
Sbjct: 293 I-----LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFE 347
Query: 262 EDPLLE 267
E+ + E
Sbjct: 348 ENNVTE 353
>sp|B4SQR6|PNP_STRM5 Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=pnp PE=3 SV=1
Length = 702
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 256 SIKQLEE 262
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFFSLVGFLP--------FPQMSPSHSCKEPQ 141
W A KE +G + GGL++ L GFLP + P + KE +
Sbjct: 113 WGTIEALKEKDEAVKGIVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQP-YIGKEIE 170
Query: 142 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFI 201
I E+ K ++S + E+ + V SE K + R V V ++GAF+
Sbjct: 171 AKIIELDKNRNNVVLSRRAWL--EQTQSEVRSEFLNQLQKGAIRKGVVSSIV--NFGAFV 226
Query: 202 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261
L DGL VHVSE+SW I +++ G+EV V+V+ +D ++ R++LS+K +
Sbjct: 227 DLGGVDGL------VHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQ 280
Query: 262 EDP 264
EDP
Sbjct: 281 EDP 283
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIIS 157
+ G I +G + G V + G + ++S H P + + G+ ++
Sbjct: 207 QKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKH-IDHPSEVVQ------VGNEVT 259
Query: 158 VKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 209
V+V+ + + +++ S K + W ++ + I G+ +GAF+ R +G+
Sbjct: 260 VEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV--RVEEGI 317
Query: 210 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 267
GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED + E
Sbjct: 318 ---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYIEE 372
>sp|B2FN86|PNP_STRMK Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain K279a) GN=pnp PE=3 SV=1
Length = 702
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 256 SIKQLEE 262
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 77 ANNRQSQSRSSADWKAARAYKES-------GFIYEGKIQGFNGGGLLVRFFSLVGFLPFP 129
ANNR SR + + K+ G + EGK+ G V + G +
Sbjct: 164 ANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVS 223
Query: 130 QMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RV 186
++S H K P+ + G ++VK+ +++ +++ S KD + + + S
Sbjct: 224 ELSHEH-VKSPEDVVS------IGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEF 276
Query: 187 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 241
N D+ G ++GAF+ ++ + GLVH+SE+S I + L G V V
Sbjct: 277 NEGDVIEGTVVRLANFGAFVEIK-----PGVQGLVHISEISHSHIGSPSEALEPGQVVSV 331
Query: 242 KVIKIDREKSRITLSIK 258
KV+ +D E RI+LSIK
Sbjct: 332 KVLGVDVENERISLSIK 348
>sp|A1ST53|PNP_PSYIN Polyribonucleotide nucleotidyltransferase OS=Psychromonas
ingrahamii (strain 37) GN=pnp PE=3 SV=1
Length = 698
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 137 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR- 195
C+E +I EI T I + QA++ + ++ ++ V V I+ G+
Sbjct: 579 CEETGTTI-EIEDDGTVKIAATSGEQADDAINRI---------KALTAEVEVGTIYTGKV 628
Query: 196 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251
D+GAF+++ L GLVH+S++ + +Q + D L EG EV+VKV+++DR+
Sbjct: 629 VRLADFGAFVNI-----LPGKDGLVHISQICEERVQKVSDHLKEGQEVKVKVLEVDRQ-G 682
Query: 252 RITLSIKQLEEDPLLE 267
R+ LSIK+ E E
Sbjct: 683 RVRLSIKEAAEKTTAE 698
>sp|Q21H65|PNP_SACD2 Polyribonucleotide nucleotidyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pnp
PE=3 SV=1
Length = 722
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
D+GAF++ L GLVH+S+++ + +Q++ D L EG ++ VK + ID ++ RI L
Sbjct: 646 DFGAFVNF-----LPGKDGLVHISQIAHERVQNVSDYLKEGQDIEVKCMDID-QRGRIKL 699
Query: 256 SIKQLEEDPLLETLEKVIPQGLE 278
SIK+L P ET E +G E
Sbjct: 700 SIKELLPAPEAETAEAPAGEGEE 722
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 196 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255
DYGAF+ L DGL +HV++++W + ++L G V+VK+IKI+ E RI+L
Sbjct: 213 DYGAFVDLGGIDGL------LHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL 266
Query: 256 SIKQLEEDP 264
+KQL +DP
Sbjct: 267 GMKQLLDDP 275
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLT-GSII 156
E G + +G ++ G V + G L H + ++ + LT G +
Sbjct: 199 EEGQVIDGVVKNITDYGAFVDLGGIDGLL--------HVTDIAWRRVNHPTEVLTIGQTV 250
Query: 157 SVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDG 208
VK+I+ N E ++ K D W ++ + F GR DYGAF+ L
Sbjct: 251 KVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELE---- 306
Query: 209 LYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 266
+ GL+HVSE+SW +++ I++ EV V+V+++D K RI+L +KQ +P
Sbjct: 307 -PGIEGLIHVSEMSW-TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364
Query: 267 ETLEK 271
+EK
Sbjct: 365 VFVEK 369
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 90 WKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIA 148
W+ A + G++ G V + G + +MS + P K +
Sbjct: 276 WQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVS--- 332
Query: 149 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG----------RDYG 198
T + V+V++ + +++ K + N + V VE VG ++G
Sbjct: 333 ---TSQEVEVQVLEVDSVKRRISLGLKQTMRNPWE--VFVEKHPVGSTVEGEVKNKTEFG 387
Query: 199 AFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSI 257
F+ L DG + G+VH+S++ W L + + D +GD V+ V+ +D EK RI+L +
Sbjct: 388 LFLGL---DG--DVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGV 442
Query: 258 KQLEEDPLLE 267
KQLE DP E
Sbjct: 443 KQLEGDPFAE 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,491,509
Number of Sequences: 539616
Number of extensions: 4252518
Number of successful extensions: 13688
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 12601
Number of HSP's gapped (non-prelim): 1030
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)