Query 022938
Match_columns 289
No_of_seqs 202 out of 2232
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 1.3E-28 4.3E-33 221.3 22.4 203 5-272 14-229 (285)
2 3go5_A Multidomain protein wit 99.8 4.7E-19 1.6E-23 159.0 13.3 145 98-278 5-156 (285)
3 2khi_A 30S ribosomal protein S 99.7 9.2E-18 3.2E-22 131.2 7.3 91 177-272 19-115 (115)
4 1kl9_A Eukaryotic translation 99.7 4.6E-19 1.6E-23 149.0 -3.6 113 98-224 14-138 (182)
5 1kl9_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 137.7 6.4 90 187-279 14-108 (182)
6 2a19_A EIF-2- alpha, eukaryoti 99.6 1.1E-16 3.7E-21 133.8 6.4 91 187-280 14-109 (175)
7 2cqo_A Nucleolar protein of 40 99.6 6.5E-16 2.2E-20 121.3 4.2 90 176-269 10-106 (119)
8 2k4k_A GSP13, general stress p 99.6 4.8E-15 1.6E-19 118.1 8.1 79 184-267 3-86 (130)
9 2khj_A 30S ribosomal protein S 99.6 8.2E-15 2.8E-19 113.3 8.4 86 85-177 17-103 (109)
10 2khj_A 30S ribosomal protein S 99.6 3.5E-15 1.2E-19 115.3 6.3 81 177-262 20-105 (109)
11 1luz_A Protein K3, protein K2; 99.5 8.3E-15 2.8E-19 108.8 7.0 77 183-263 6-87 (88)
12 2eqs_A ATP-dependent RNA helic 99.5 7.7E-15 2.6E-19 112.3 6.8 82 182-268 6-94 (103)
13 2khi_A 30S ribosomal protein S 99.5 9.9E-15 3.4E-19 113.9 7.2 93 86-184 17-113 (115)
14 2a19_A EIF-2- alpha, eukaryoti 99.5 7.6E-15 2.6E-19 122.6 6.1 90 98-194 14-109 (175)
15 1q8k_A Eukaryotic translation 99.5 1.1E-14 3.9E-19 131.4 5.8 89 186-277 11-104 (308)
16 3aev_A Translation initiation 99.5 2E-14 6.7E-19 128.2 7.1 89 187-278 10-103 (275)
17 2k52_A Uncharacterized protein 99.5 1.3E-13 4.4E-18 100.6 9.9 69 185-262 2-75 (80)
18 1q8k_A Eukaryotic translation 99.4 3.7E-14 1.3E-18 128.1 3.3 98 98-202 12-121 (308)
19 1hh2_P NUSA, N utilization sub 99.4 2.6E-14 9E-19 130.5 2.1 144 26-194 73-218 (344)
20 2k4k_A GSP13, general stress p 99.4 1.1E-12 3.6E-17 104.5 10.0 74 97-177 5-79 (130)
21 3cw2_C Translation initiation 99.4 4.7E-14 1.6E-18 125.3 2.3 90 185-277 8-102 (266)
22 2k52_A Uncharacterized protein 99.4 1.8E-12 6.2E-17 94.4 10.3 70 97-177 3-73 (80)
23 1luz_A Protein K3, protein K2; 99.4 6.2E-13 2.1E-17 98.6 6.7 72 97-177 9-84 (88)
24 2cqo_A Nucleolar protein of 40 99.4 1.4E-13 4.9E-18 107.8 3.2 82 89-177 12-97 (119)
25 3aev_A Translation initiation 99.3 1.4E-12 4.9E-17 116.1 6.5 98 98-202 10-119 (275)
26 2eqs_A ATP-dependent RNA helic 99.3 5.9E-12 2E-16 96.1 8.7 72 97-177 10-86 (103)
27 1e3p_A Guanosine pentaphosphat 99.3 2.4E-14 8.1E-19 143.2 -6.6 128 105-273 617-755 (757)
28 4aid_A Polyribonucleotide nucl 99.2 9.4E-13 3.2E-17 130.8 0.0 88 179-272 628-720 (726)
29 3cw2_C Translation initiation 99.1 1.2E-11 4.1E-16 109.8 3.0 86 97-189 9-100 (266)
30 3cdi_A Polynucleotide phosphor 99.1 4.5E-12 1.6E-16 126.3 0.0 85 179-269 618-707 (723)
31 1wi5_A RRP5 protein homolog; S 99.1 1.1E-10 3.7E-15 91.4 5.4 76 182-261 15-96 (119)
32 1wi5_A RRP5 protein homolog; S 99.1 7.4E-11 2.5E-15 92.3 4.3 74 97-177 19-95 (119)
33 1go3_E DNA-directed RNA polyme 99.1 5E-10 1.7E-14 94.3 9.6 75 97-177 79-168 (187)
34 1go3_E DNA-directed RNA polyme 99.0 4.3E-10 1.5E-14 94.8 7.6 76 185-266 78-176 (187)
35 3psi_A Transcription elongatio 99.0 2.2E-10 7.6E-15 119.4 7.0 75 182-261 896-976 (1219)
36 3psi_A Transcription elongatio 99.0 5.7E-10 2E-14 116.3 9.4 77 95-177 898-975 (1219)
37 4ayb_E DNA-directed RNA polyme 99.0 3.7E-10 1.3E-14 94.6 5.7 80 183-268 76-177 (180)
38 3bzc_A TEX; helix-turn-helix, 99.0 1.9E-10 6.4E-15 115.4 3.2 75 182-261 648-727 (785)
39 4ayb_E DNA-directed RNA polyme 99.0 1.9E-09 6.5E-14 90.2 8.9 75 97-177 79-167 (180)
40 3bzc_A TEX; helix-turn-helix, 98.9 3.6E-10 1.2E-14 113.4 3.7 74 97-177 652-726 (785)
41 3psf_A Transcription elongatio 98.9 1.1E-10 3.9E-15 119.9 -0.0 75 182-261 899-979 (1030)
42 4aid_A Polyribonucleotide nucl 98.9 1.2E-10 4.1E-15 115.7 -0.0 82 88-177 626-708 (726)
43 2nn6_I 3'-5' exoribonuclease C 98.9 2.3E-09 7.9E-14 91.8 7.0 78 184-261 77-164 (209)
44 3cdi_A Polynucleotide phosphor 98.8 3.2E-10 1.1E-14 113.1 0.0 81 89-177 617-698 (723)
45 2c35_B Human RPB7, DNA-directe 98.8 1.1E-08 3.9E-13 84.9 9.2 78 98-176 80-165 (172)
46 3psf_A Transcription elongatio 98.8 3.6E-10 1.2E-14 116.1 0.0 78 95-178 901-979 (1030)
47 2nn6_I 3'-5' exoribonuclease C 98.8 8.1E-09 2.8E-13 88.4 7.7 75 97-178 79-164 (209)
48 1y14_B B16, RPB7, DNA-directed 98.8 2E-08 7E-13 83.3 9.5 78 98-176 82-165 (171)
49 3m7n_A Putative uncharacterize 98.8 8.8E-09 3E-13 86.1 7.1 67 186-261 56-135 (179)
50 2b8k_G B16, DNA-directed RNA p 98.8 1.9E-08 6.6E-13 86.3 8.9 78 98-177 82-166 (215)
51 1k0r_A NUSA; two component arr 98.8 3.1E-09 1E-13 97.4 4.0 151 26-194 41-222 (366)
52 1e3p_A Guanosine pentaphosphat 98.7 4.5E-10 1.5E-14 112.4 -3.3 80 95-182 663-750 (757)
53 3h0g_G DNA-directed RNA polyme 98.7 1.3E-08 4.4E-13 84.6 4.9 77 98-176 83-166 (172)
54 2c35_B Human RPB7, DNA-directe 98.6 4.6E-08 1.6E-12 81.2 6.6 66 187-259 80-165 (172)
55 3m7n_A Putative uncharacterize 98.6 7.8E-08 2.7E-12 80.3 7.7 69 98-179 57-136 (179)
56 2b8k_G B16, DNA-directed RNA p 98.6 3.7E-08 1.3E-12 84.6 5.7 76 185-267 80-173 (215)
57 1y14_B B16, RPB7, DNA-directed 98.6 7.2E-08 2.5E-12 79.9 7.1 61 185-251 80-155 (171)
58 1hh2_P NUSA, N utilization sub 98.6 3.6E-08 1.2E-12 90.0 5.6 108 149-269 86-208 (344)
59 2je6_I RRP4, exosome complex R 98.5 6.3E-08 2.2E-12 85.1 5.1 70 185-260 71-148 (251)
60 2asb_A Transcription elongatio 98.5 5.6E-08 1.9E-12 84.5 4.3 84 98-194 6-99 (251)
61 3h0g_G DNA-directed RNA polyme 98.5 5.4E-08 1.9E-12 80.8 3.3 65 183-253 79-158 (172)
62 2ba0_A Archeal exosome RNA bin 98.5 2.8E-07 9.4E-12 79.9 7.3 70 185-260 54-129 (229)
63 2ba0_A Archeal exosome RNA bin 98.4 5.1E-07 1.7E-11 78.2 8.7 74 97-177 55-129 (229)
64 2je6_I RRP4, exosome complex R 98.4 3.3E-07 1.1E-11 80.5 6.8 74 97-177 72-148 (251)
65 2z0s_A Probable exosome comple 98.4 1.8E-07 6.2E-12 81.5 4.7 70 185-260 63-141 (235)
66 2z0s_A Probable exosome comple 98.4 3.2E-07 1.1E-11 79.9 5.8 74 97-177 64-141 (235)
67 2bh8_A 1B11; transcription, mo 98.4 8.5E-07 2.9E-11 67.1 7.1 83 98-226 12-99 (101)
68 2id0_A Exoribonuclease 2; RNAs 98.2 3.7E-06 1.3E-10 83.3 10.5 81 95-175 554-643 (644)
69 3ayh_B DNA-directed RNA polyme 98.0 1.4E-05 4.6E-10 68.0 8.5 70 98-167 80-161 (203)
70 2id0_A Exoribonuclease 2; RNAs 98.0 1.2E-05 4.1E-10 79.6 7.5 69 185-257 555-642 (644)
71 2bx2_L Ribonuclease E, RNAse E 97.9 2E-05 6.8E-10 75.6 7.4 72 98-175 44-126 (517)
72 2ckz_B C25, DNA-directed RNA p 97.9 3E-05 1E-09 66.5 7.8 71 98-168 80-158 (218)
73 1k0r_A NUSA; two component arr 97.8 3.3E-05 1.1E-09 70.7 7.3 85 179-271 119-214 (366)
74 3ayh_B DNA-directed RNA polyme 97.8 2.9E-05 9.8E-10 66.0 6.1 58 186-249 79-160 (203)
75 2vnu_D Exosome complex exonucl 97.7 4E-05 1.4E-09 77.2 7.4 70 100-175 670-760 (760)
76 2wp8_J Exosome complex exonucl 97.7 5.9E-05 2E-09 77.8 7.6 70 100-175 887-977 (977)
77 2bx2_L Ribonuclease E, RNAse E 97.5 8.7E-05 3E-09 71.2 5.7 74 182-260 39-128 (517)
78 2ckz_B C25, DNA-directed RNA p 97.5 0.00011 3.7E-09 63.1 5.3 62 185-251 78-158 (218)
79 2nn6_H Exosome complex exonucl 97.4 6.6E-05 2.2E-09 67.6 3.4 69 185-259 92-175 (308)
80 2bh8_A 1B11; transcription, mo 97.4 4.3E-05 1.5E-09 57.5 1.9 87 42-136 11-99 (101)
81 2vnu_D Exosome complex exonucl 97.4 8.1E-05 2.8E-09 75.0 4.4 65 190-258 671-760 (760)
82 2wp8_J Exosome complex exonucl 97.3 0.00012 4.1E-09 75.5 4.6 66 189-258 887-977 (977)
83 2ja9_A Exosome complex exonucl 97.3 0.00028 9.5E-09 58.4 5.9 65 186-256 5-74 (175)
84 2ja9_A Exosome complex exonucl 97.3 0.00086 3E-08 55.4 8.8 68 98-174 6-75 (175)
85 2nn6_H Exosome complex exonucl 97.3 0.00027 9.3E-09 63.5 6.0 80 97-177 93-176 (308)
86 2asb_A Transcription elongatio 96.9 0.003 1E-07 54.8 8.7 65 187-259 6-81 (251)
87 2nn6_G Exosome complex exonucl 95.4 0.014 4.6E-07 52.0 4.6 66 185-257 124-194 (289)
88 2nn6_G Exosome complex exonucl 95.2 0.045 1.5E-06 48.6 7.2 68 98-174 126-194 (289)
89 2rf4_A DNA-directed RNA polyme 94.7 0.13 4.5E-06 43.5 8.6 70 98-168 128-204 (214)
90 2r7d_A Ribonuclease II family 93.6 0.12 4E-06 49.1 6.7 59 187-257 402-460 (469)
91 2r7d_A Ribonuclease II family 90.7 0.65 2.2E-05 43.9 7.9 61 97-175 401-461 (469)
92 2eqj_A Metal-response element- 90.6 2.1 7.1E-05 29.0 8.1 35 98-132 25-62 (66)
93 3d0f_A Penicillin-binding 1 tr 88.0 1.4 4.8E-05 32.6 6.5 57 97-159 31-93 (106)
94 1jjg_A M156R; beta barrel, S1 85.2 1.6 5.5E-05 31.5 5.1 66 179-248 23-93 (102)
95 3h8z_A FragIle X mental retard 81.3 2.4 8.4E-05 32.7 5.2 57 98-161 13-72 (128)
96 4hcz_A PHD finger protein 1; p 76.5 12 0.00041 24.5 6.5 35 98-132 15-52 (58)
97 3i4o_A Translation initiation 74.6 17 0.00059 25.4 7.6 64 99-173 12-77 (79)
98 1yvc_A MRR5; structure, autost 73.9 15 0.00051 24.7 7.1 48 97-165 13-61 (70)
99 1yez_A MM1357; MAR30, autostru 73.2 18 0.00061 24.1 8.2 47 97-164 11-58 (68)
100 3i2z_B RNA chaperone, negative 71.7 14 0.00046 25.1 6.4 51 102-163 5-59 (71)
101 1c9o_A CSPB, cold-shock protei 71.6 19 0.00066 23.9 8.0 49 104-163 3-54 (66)
102 1g6p_A Cold shock protein TMCS 70.0 11 0.00038 25.1 5.6 48 104-162 2-52 (66)
103 2xk0_A Polycomb protein PCL; t 69.6 20 0.00068 24.3 6.5 35 98-132 27-62 (69)
104 2m0o_A PHD finger protein 1; t 69.4 14 0.00047 25.6 5.8 36 98-133 38-76 (79)
105 3a0j_A Cold shock protein; OB- 69.2 19 0.00065 24.5 6.7 49 104-163 3-54 (73)
106 3cam_A Cold-shock domain famil 66.1 14 0.00049 24.7 5.5 49 104-163 3-55 (67)
107 2yty_A Cold shock domain-conta 65.5 16 0.00055 26.0 5.9 52 98-161 14-67 (88)
108 2kcm_A Cold shock domain famil 64.8 21 0.00073 24.5 6.2 47 104-161 2-52 (74)
109 1h95_A CSD, Y-box binding prot 63.4 29 0.00097 24.0 6.8 56 100-162 6-65 (79)
110 1jjg_A M156R; beta barrel, S1 62.8 35 0.0012 24.5 7.1 62 97-166 30-94 (102)
111 2rf4_A DNA-directed RNA polyme 60.7 31 0.0011 28.6 7.8 65 183-252 124-205 (214)
112 2k5n_A Putative cold-shock pro 58.8 40 0.0014 23.0 7.1 46 103-162 3-52 (74)
113 3aqq_A Calcium-regulated heat 58.5 22 0.00074 28.0 6.0 53 98-163 58-114 (147)
114 1wfq_A UNR protein; beta-barre 58.3 46 0.0016 23.6 8.2 52 99-163 15-69 (89)
115 3dlm_A Histone-lysine N-methyl 55.7 89 0.003 26.0 9.9 93 98-221 20-121 (213)
116 2ytx_A Cold shock domain-conta 55.3 21 0.00071 25.9 5.1 50 99-161 15-67 (97)
117 3d0f_A Penicillin-binding 1 tr 54.3 20 0.00068 26.1 4.9 43 195-242 45-93 (106)
118 3ts2_A Protein LIN-28 homolog 53.6 42 0.0014 26.2 7.0 52 101-163 8-70 (148)
119 2e5q_A PHD finger protein 19; 50.8 38 0.0013 22.4 5.1 37 98-134 19-58 (63)
120 3h8z_A FragIle X mental retard 50.7 81 0.0028 24.0 8.9 87 4-131 21-114 (128)
121 2gsv_A Hypothetical protein YV 48.6 9.9 0.00034 25.7 2.1 21 268-288 17-37 (80)
122 1cuk_A RUVA protein; DNA repai 48.5 36 0.0012 28.1 6.1 51 102-167 4-56 (203)
123 1fr3_A MOP, molybdate/tungstat 44.3 48 0.0016 21.2 5.2 47 101-161 7-59 (67)
124 3ulj_A LIN28B, DNA-binding pro 41.6 92 0.0031 22.1 7.2 51 102-163 8-69 (90)
125 1gut_A Mopii, molybdate bindin 39.1 50 0.0017 21.3 4.7 47 101-161 7-60 (68)
126 2kr7_A FKBP-type peptidyl-prol 38.8 1.3E+02 0.0045 23.1 8.0 21 99-119 106-126 (151)
127 2lss_A Cold shock-like protein 44.8 6.5 0.00022 26.7 0.0 50 102-162 4-57 (70)
128 3qii_A PHD finger protein 20; 36.9 1.1E+02 0.0037 21.6 6.4 34 99-132 34-69 (85)
129 2e5p_A Protein PHF1, PHD finge 33.3 1.1E+02 0.0037 20.5 5.8 37 98-134 21-60 (68)
130 2do3_A Transcription elongatio 33.2 22 0.00076 24.2 2.0 22 226-247 11-42 (69)
131 2bti_A Carbon storage regulato 32.8 42 0.0014 22.4 3.2 32 229-262 10-41 (63)
132 2jpp_A Translational repressor 32.6 41 0.0014 22.9 3.3 32 229-262 8-39 (70)
133 2qtx_A Uncharacterized protein 32.4 79 0.0027 21.5 4.7 33 97-129 32-64 (71)
134 2ytv_A Cold shock domain-conta 32.3 31 0.0011 23.9 2.7 49 101-162 7-58 (79)
135 1nz9_A Transcription antitermi 31.4 1E+02 0.0034 19.5 5.2 21 240-260 22-42 (58)
136 1kq1_A HFQ, HOST factor for Q 29.4 90 0.0031 21.5 4.7 36 97-132 26-61 (77)
137 2qcp_X Cation efflux system pr 29.2 1.2E+02 0.0043 20.7 5.5 40 155-194 9-62 (80)
138 1mhn_A SurviVal motor neuron p 28.4 1.2E+02 0.004 19.3 5.8 36 98-133 16-55 (59)
139 1ynx_A Replication factor-A pr 27.8 80 0.0027 23.1 4.6 27 167-193 50-76 (114)
140 2vb2_X Copper protein, cation 27.2 1.6E+02 0.0054 20.6 5.8 40 155-194 17-70 (88)
141 1vpz_A Carbon storage regulato 26.2 54 0.0018 22.5 3.0 32 228-261 19-50 (73)
142 3cgm_A SLYD, peptidyl-prolyl C 26.2 2.3E+02 0.0079 22.0 7.8 21 99-119 97-117 (158)
143 1d7q_A Translation initiation 25.4 2.4E+02 0.0081 21.8 8.2 66 100-177 30-97 (143)
144 3r8s_P 50S ribosomal protein L 25.2 62 0.0021 24.2 3.4 23 232-254 18-40 (114)
145 2l55_A SILB,silver efflux prot 24.8 1.3E+02 0.0045 20.7 5.0 63 103-173 6-69 (82)
146 3ahu_A Protein HFQ; SM-like mo 24.6 83 0.0028 21.8 3.7 36 97-132 30-65 (78)
147 4a4f_A SurviVal of motor neuro 23.7 1.5E+02 0.0053 19.1 5.4 35 98-132 21-59 (64)
148 3ry4_A Low affinity immunoglob 23.1 80 0.0027 23.4 4.0 43 7-49 62-104 (170)
149 3r8s_P 50S ribosomal protein L 22.9 1.8E+02 0.006 21.7 5.5 23 33-55 10-32 (114)
150 1g5v_A SurviVal motor neuron p 22.5 1.9E+02 0.0065 20.3 5.5 36 98-133 23-62 (88)
151 3v2d_T 50S ribosomal protein L 22.3 81 0.0028 24.6 3.7 22 232-253 21-42 (146)
152 2ztd_A Holliday junction ATP-d 22.3 1.7E+02 0.0058 24.2 6.0 51 102-168 20-72 (212)
153 4dt4_A FKBP-type 16 kDa peptid 21.6 3E+02 0.01 21.7 7.6 21 99-119 125-145 (169)
154 3s6w_A Tudor domain-containing 21.2 1.2E+02 0.0041 18.8 3.8 34 98-131 14-51 (54)
155 2p9r_A Alpha-2-M, alpha-2-macr 21.1 61 0.0021 22.9 2.7 18 231-248 11-28 (102)
156 2g6f_X RHO guanine nucleotide 21.0 1.4E+02 0.0049 18.4 4.3 32 97-130 23-55 (59)
157 2ftc_K 39S ribosomal protein L 20.9 81 0.0028 22.9 3.2 21 233-254 4-24 (98)
158 2j6f_A CD2-associated protein; 20.8 1.2E+02 0.0041 19.0 3.9 35 97-131 20-54 (62)
159 1x65_A UNR protein; cell-free 20.6 59 0.002 23.0 2.4 49 101-162 7-57 (89)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.96 E-value=1.3e-28 Score=221.27 Aligned_cols=203 Identities=10% Similarity=0.044 Sum_probs=169.5
Q ss_pred ccccccceeEeCCCCCCccceeEeecccccccCCcccccCCCeEEEEEEEEeCCCCeEeeeeecccccCCcchhhhhhhh
Q 022938 5 SSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQS 84 (289)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~vG~~v~~~Vl~~d~~~~~i~ls~k~~l~~~~~~~~~~~~~~ 84 (289)
..++-.++++++.. |...+++.+.. |+ ++||++++.|+. |. ++|+.+|++.+.
T Consensus 14 V~~~~~~G~fv~~~----g~egllp~se~----~~---~vGdevev~v~~-d~-~~r~iat~~~p~-------------- 66 (285)
T 3go5_A 14 IIDENDRFYFVQKD----GQTYALAKEEG----QH---TVGDTVKGFAYT-DM-KQKLRLTTLEVT-------------- 66 (285)
T ss_dssp EEEECSSEEEEEET----TEEEEEEGGGC----CC---CTTSEEEEEEEE-CT-TSCEEEECSCCC--------------
T ss_pred EEEEECCEEEEEcC----CeEEEEEHHHC----cc---ccCCEEEEEEEE-CC-CCCEEEeccccc--------------
Confidence 45777899999873 56666777766 33 999999999973 54 567778865321
Q ss_pred hhhhHHHHHHHhhcCCCEEEEEEEEEE-cCcEEEEECC--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 85 RSSADWKAARAYKESGFIYEGKIQGFN-GGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 85 ~~~~~~~~l~~~~~~G~iv~g~V~~v~-~~G~~V~l~g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
++.|++++|+|++++ ++|+||++|. .+||||.+|++|... .+ ..+||.+.|+ +
T Consensus 67 ------------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~-~~----------~~~Gd~v~v~-l 122 (285)
T 3go5_A 67 ------------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE-LW----------PKKGDQLYIR-L 122 (285)
T ss_dssp ------------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG-GS----------CCTTCEEEEE-E
T ss_pred ------------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc-cc----------cCCCCEEEEE-E
Confidence 479999999999999 7999999984 899999999988542 22 2399999877 5
Q ss_pred EEecCCcEEEEEeec----chhhhcccccccccEEEe-----eeeeEEE-EEecCCCceeEEEEEEccCcCcccccCccc
Q 022938 162 QANEEMKKLVFSEKD----AVWNKYSSRVNVEDIFVG-----RDYGAFI-HLRFPDGLYHLTGLVHVSEVSWDLIQDIRD 231 (289)
Q Consensus 162 ~vd~~~~ri~lS~k~----~~~~~~~~~~~~G~iv~G-----~~~G~fV-~i~~~~G~~~i~Glv~~sels~~~~~~~~~ 231 (289)
.+|+ ++|+.+|+|+ .+|......+++|++|+| +++|+|| .++ +| +.||||.||++ +
T Consensus 123 ~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~--~g---~~Glih~SEl~--------~ 188 (285)
T 3go5_A 123 EVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPE--NN---MLGFIHPSERY--------A 188 (285)
T ss_dssp EECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETT--TT---EEEEECGGGCS--------S
T ss_pred EECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeC--CC---eEEEEEHHHcc--------c
Confidence 8998 7899999973 478888899999999999 8999999 985 55 99999999997 3
Q ss_pred ccCCCCEEEEEEEEEeCCCCeEEEEEecCCCCchhHHhhhh
Q 022938 232 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 272 (289)
Q Consensus 232 ~~~iGd~V~vkV~~id~e~~ri~lSlK~~~~~p~~~~~~~~ 272 (289)
.+++||.|+|+|+++|++++||+||+|+...+++++..+..
T Consensus 189 ~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~i 229 (285)
T 3go5_A 189 EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQMI 229 (285)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHHHH
T ss_pred cCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHHHH
Confidence 58999999999999999999999999999999998876554
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.79 E-value=4.7e-19 Score=159.01 Aligned_cols=145 Identities=15% Similarity=0.090 Sum_probs=121.5
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEeecc
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA 177 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k~~ 177 (289)
..|++++|+|++++++|+||+++|.+||+|.++++. . +||.|+|.|. .|. .+|+++|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~-----------~------vGdevev~v~-~d~-~~r~iat~~~- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQH-----------T------VGDTVKGFAY-TDM-KQKLRLTTLE- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCC-----------C------TTSEEEEEEE-ECT-TSCEEEECSC-
T ss_pred cCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCcc-----------c------cCCEEEEEEE-ECC-CCCEEEeccc-
Confidence 479999999999999999999999999999999853 1 9999999998 464 5677777654
Q ss_pred hhhhcccccccccEEEe-----e-eeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCC
Q 022938 178 VWNKYSSRVNVEDIFVG-----R-DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251 (289)
Q Consensus 178 ~~~~~~~~~~~G~iv~G-----~-~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ 251 (289)
| .+++|+++.| + ++|+||+++. +| +.||||.|+++|.+.. .+++||.+.++ +.+|+ ++
T Consensus 65 p------~~~~G~~~~g~V~~v~~~~GaFVdiG~-~~---~d~lvp~sel~~~~~~----~~~~Gd~v~v~-l~iD~-~~ 128 (285)
T 3go5_A 65 V------TATQDQFGWGRVTEVRKDLGVFVDTGL-PD---KEIVVSLDILPELKEL----WPKKGDQLYIR-LEVDK-KD 128 (285)
T ss_dssp C------CSCSSSCEEEEEEEEETTTEEEEECSC-TT---CCEEEEGGGSCSSGGG----SCCTTCEEEEE-EEECT-TS
T ss_pred c------cccCCCEEEEEEEEEccCceEEEEECC-CC---cEEEEEHHHCCccccc----ccCCCCEEEEE-EEECC-CC
Confidence 2 3689999998 6 6999999961 14 7999999999986532 46899999766 68998 78
Q ss_pred eEEEEEecC-CCCchhHHhhhhCCCChH
Q 022938 252 RITLSIKQL-EEDPLLETLEKVIPQGLE 278 (289)
Q Consensus 252 ri~lSlK~~-~~~p~~~~~~~~~~g~~~ 278 (289)
||.+|+|+. ..+||.....++..|+..
T Consensus 129 Ri~ls~k~~~~~~~~~~~~~~~~~G~~V 156 (285)
T 3go5_A 129 RIWGLLAYQEDFQRLARPAYNNMQNQNW 156 (285)
T ss_dssp CEEEEECCHHHHHHHCCCCCSCCTTCEE
T ss_pred cEEEEehhhhhcchhhhhhhhCCCCCEE
Confidence 999999976 578999988999998864
No 3
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.71 E-value=9.2e-18 Score=131.19 Aligned_cols=91 Identities=35% Similarity=0.634 Sum_probs=81.8
Q ss_pred chhhhcccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcc-cccCcccccCCCCEEEEEEEEEeCCC
Q 022938 177 AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREK 250 (289)
Q Consensus 177 ~~~~~~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~-~~~~~~~~~~iGd~V~vkV~~id~e~ 250 (289)
.||+....++++|+++.| +++|+||+|+ +| +.||+|+++++++ +..++.+.|++||.|+|+|+++|+++
T Consensus 19 ~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~--~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~ 93 (115)
T 2khi_A 19 SHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEER 93 (115)
T ss_dssp --CCCSSCSSCSSCEEEEEEEEEETTEEEEECS--TT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTT
T ss_pred CCHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC--CC---CEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCC
Confidence 588888889999999999 8999999996 55 9999999999984 67888899999999999999999999
Q ss_pred CeEEEEEecCCCCchhHHhhhh
Q 022938 251 SRITLSIKQLEEDPLLETLEKV 272 (289)
Q Consensus 251 ~ri~lSlK~~~~~p~~~~~~~~ 272 (289)
++|.||+|++.+|||+++.++|
T Consensus 94 ~rI~lslk~~~~~p~~~~~~~~ 115 (115)
T 2khi_A 94 RRISLGLKQCKANPWQQFAETH 115 (115)
T ss_dssp TEEEECCCCCCSSCCCCCCCCC
T ss_pred CEEEEEEEecCcCHHHHHHhhC
Confidence 9999999999999999887654
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.69 E-value=4.6e-19 Score=148.99 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=92.2
Q ss_pred cCCCEEEEEEEEEEcCcEEEEE---CCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRF---FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l---~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
+.|+++.|+|++++++|+||++ +|++|+||+|++++.+. .+|.+.++ +||.|+|+|+++|.+++++.||+
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v-~~~~~~~~------vGd~V~VkVl~vD~~~~rI~LSl 86 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRI-RSINKLIR------IGRNECVVVIRVDKEKGYIDLSK 86 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------C------TTCEEEEEEEEEETTTTEEEEES
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCccc-CCHHHhcC------CCCEEEEEEEEEECCCCEEEEEE
Confidence 6899999999999999999999 48999999999999886 88888887 99999999999999999999999
Q ss_pred ec---chhhhcccccccccEEEe-----ee-eeEEEEEecCCCceeEEEEEEccCcCcc
Q 022938 175 KD---AVWNKYSSRVNVEDIFVG-----RD-YGAFIHLRFPDGLYHLTGLVHVSEVSWD 224 (289)
Q Consensus 175 k~---~~~~~~~~~~~~G~iv~G-----~~-~G~fV~i~~~~G~~~i~Glv~~sels~~ 224 (289)
|+ .||......++.|+.+.| ++ +| +++. +| +.|++|.++++|.
T Consensus 87 k~~~~~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~--~g---iegl~h~s~~~~~ 138 (182)
T 1kl9_A 87 RRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKD--EQ---LESLFQRTAWVFD 138 (182)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSH--HH---HHHHHHHTHHHHH
T ss_pred eecCcChHHHHHHhccCCCEEEEEEEEchhhcC--Cccc--CC---hhheEEeeecchh
Confidence 96 479888899999999998 55 99 7775 54 9999999988775
No 5
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.68 E-value=3.2e-17 Score=137.69 Aligned_cols=90 Identities=26% Similarity=0.405 Sum_probs=71.0
Q ss_pred ccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecCC
Q 022938 187 NVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261 (289)
Q Consensus 187 ~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~ 261 (289)
++|+++.| ++||+||+|...+| +.||+|+|+++|.++.++++.|++||.|+|+|+++|+++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~ 90 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVS 90 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTT---EEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 78999999 89999999931144 99999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhCCCChHH
Q 022938 262 EDPLLETLEKVIPQGLEP 279 (289)
Q Consensus 262 ~~p~~~~~~~~~~g~~~~ 279 (289)
++||....+++..|+...
T Consensus 91 ~~p~~~~~~~~~~g~~v~ 108 (182)
T 1kl9_A 91 PEEAIKCEDKFTKSKTVY 108 (182)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHhccCCCEEE
Confidence 999999999999887754
No 6
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.65 E-value=1.1e-16 Score=133.84 Aligned_cols=91 Identities=24% Similarity=0.414 Sum_probs=74.3
Q ss_pred ccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecCC
Q 022938 187 NVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261 (289)
Q Consensus 187 ~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~ 261 (289)
++|+++.| ++||+||+|...+| +.||||+|+++|.++.++.+.|++||.|+|+|+++|+++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS 90 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecC
Confidence 38999988 89999999931134 99999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhCCCChHHH
Q 022938 262 EDPLLETLEKVIPQGLEPY 280 (289)
Q Consensus 262 ~~p~~~~~~~~~~g~~~~~ 280 (289)
++||....+++..|+....
T Consensus 91 ~~~~~~~~~~~~~g~~v~g 109 (175)
T 2a19_A 91 SEDIIKCEEKYQKSKTVHS 109 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHhccCCCcceE
Confidence 9999999999998876544
No 7
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-16 Score=121.30 Aligned_cols=90 Identities=28% Similarity=0.406 Sum_probs=79.5
Q ss_pred cchhhhcccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCC
Q 022938 176 DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 250 (289)
Q Consensus 176 ~~~~~~~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~ 250 (289)
+.+|+.....+++|+++.| .+||+||+|. | +++.||||++++++.++.++.+.|++||.|+|+|+++|+++
T Consensus 10 ~~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~---g-~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~ 85 (119)
T 2cqo_A 10 SGRPETMENLPALYTIFQGEVAMVTDYGAFIKIP---G-CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKN 85 (119)
T ss_dssp CCCCCCSCCSCCTTCEEEEEEEEEETTEEEEECT---T-CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECS
T ss_pred ccchhhhhcccCCCCEEEEEEEEEeCceEEEEEC---C-CcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccc
Confidence 3467778888999999999 8999999993 2 02699999999999999999999999999999999999864
Q ss_pred --CeEEEEEecCCCCchhHHh
Q 022938 251 --SRITLSIKQLEEDPLLETL 269 (289)
Q Consensus 251 --~ri~lSlK~~~~~p~~~~~ 269 (289)
++|.||+|++.++||+.+.
T Consensus 86 ~~~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 86 DRIKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp SCEEEEEESTTBCSSSCCBSC
T ss_pred cCceEEEEEeecccCCccccC
Confidence 6999999999999998764
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.57 E-value=4.8e-15 Score=118.14 Aligned_cols=79 Identities=41% Similarity=0.755 Sum_probs=73.4
Q ss_pred cccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 022938 184 SRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258 (289)
Q Consensus 184 ~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK 258 (289)
.++++|+++.| +++|+||+|. +| +.||||++++++.++.++.+.|++||.|+|+|+++|+++++|.||+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~--~~---~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALD--EE---TQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEE--TT---EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEEC--CC---cEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 46889999999 8999999996 55 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhH
Q 022938 259 QLEEDPLLE 267 (289)
Q Consensus 259 ~~~~~p~~~ 267 (289)
++.++||..
T Consensus 78 ~~~~~p~~~ 86 (130)
T 2k4k_A 78 ATQAAPEKK 86 (130)
T ss_dssp HHHHSCCCC
T ss_pred ecccCcccc
Confidence 999999763
No 9
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.56 E-value=8.2e-15 Score=113.25 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=76.1
Q ss_pred hhhhHHHHHHHhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 85 RSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 85 ~~~~~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
..+.+|+.+...++.|++++|+|+++.++|+||+++ |++||||.+++++.+. .+|.+.++ +||.|+|+|+++
T Consensus 17 ~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~-~~~~~~~~------vGd~V~v~V~~v 89 (109)
T 2khj_A 17 RGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRV-EDATLVLS------VGDEVEAKFTGV 89 (109)
T ss_dssp ----CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSS-SSGGGSCC------TTCEEEEEEEEE
T ss_pred cccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccc-cChhhccC------CCCEEEEEEEEE
Confidence 456689998888999999999999999999999999 9999999999998876 77777776 999999999999
Q ss_pred ecCCcEEEEEeecc
Q 022938 164 NEEMKKLVFSEKDA 177 (289)
Q Consensus 164 d~~~~ri~lS~k~~ 177 (289)
|.+++++.||++..
T Consensus 90 d~~~~ki~LS~k~~ 103 (109)
T 2khj_A 90 DRKNRAISLSVRAK 103 (109)
T ss_dssp ETTTTEEEEETTSS
T ss_pred ECCCCEEEEEEeec
Confidence 99889999999873
No 10
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.56 E-value=3.5e-15 Score=115.33 Aligned_cols=81 Identities=32% Similarity=0.519 Sum_probs=75.1
Q ss_pred chhhhcccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCC
Q 022938 177 AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 251 (289)
Q Consensus 177 ~~~~~~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ 251 (289)
+||+....++++|+++.| .++|+||+|+ +| +.||+|++++++.++.++.+.|++||.|+|+|+++|++++
T Consensus 20 ~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~--~~---~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ 94 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR 94 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECS--TT---CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT
T ss_pred CHHHHHhhcCCCCCEEEEEEEEEECCeEEEEEC--CC---CEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCC
Confidence 589999999999999999 8999999995 55 9999999999999999999999999999999999999889
Q ss_pred eEEEEEecCCC
Q 022938 252 RITLSIKQLEE 262 (289)
Q Consensus 252 ri~lSlK~~~~ 262 (289)
+|.||+|++++
T Consensus 95 ki~LS~k~~~~ 105 (109)
T 2khj_A 95 AISLSVRAKDE 105 (109)
T ss_dssp EEEEETTSSSS
T ss_pred EEEEEEeecCh
Confidence 99999999764
No 11
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.54 E-value=8.3e-15 Score=108.82 Aligned_cols=77 Identities=30% Similarity=0.409 Sum_probs=68.7
Q ss_pred ccccccccEEEe----eeeeEEEEEecCCCceeEEEEEEcc-CcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 022938 183 SSRVNVEDIFVG----RDYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257 (289)
Q Consensus 183 ~~~~~~G~iv~G----~~~G~fV~i~~~~G~~~i~Glv~~s-els~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSl 257 (289)
+...++|+++.| ++||+||+|...+| ++||+|+| +++++++.++++.+ +||.|+|+|+++|+++++|.||+
T Consensus 6 y~~~~vG~~~~G~V~v~~fG~FVel~~~~~---~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 6 YSLPNAGDVIKGRVYEKDYALYIYLFDYPH---FEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp SCCCCTTCEEEEEEEEETTEEEEEETTCTT---SEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCEEEEEEEEEccEEEEEECCCCC---eEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEE
Confidence 455688999999 89999999952124 99999999 99999999999999 99999999999999999999999
Q ss_pred ecCCCC
Q 022938 258 KQLEED 263 (289)
Q Consensus 258 K~~~~~ 263 (289)
|++.+|
T Consensus 82 k~~~~~ 87 (88)
T 1luz_A 82 KRMCRH 87 (88)
T ss_dssp EEECSC
T ss_pred eecCCC
Confidence 998775
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.7e-15 Score=112.29 Aligned_cols=82 Identities=26% Similarity=0.521 Sum_probs=71.7
Q ss_pred cccccccccEEEe-----eeeeEEEEEecC-CCceeEEEEEEccCc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEE
Q 022938 182 YSSRVNVEDIFVG-----RDYGAFIHLRFP-DGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 254 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~G~fV~i~~~-~G~~~i~Glv~~sel-s~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~ 254 (289)
....+++|+++.| .+||+||+|+.. +| +.||+|+|++ ++.++.++.+.|++||.|+|+|+++|+ ++|.
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~---~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~ 80 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKR---WEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTS 80 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSC---CEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEE
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCC---eEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeE
Confidence 3456899999999 899999999621 14 9999999999 666788899999999999999999997 6999
Q ss_pred EEEecCCCCchhHH
Q 022938 255 LSIKQLEEDPLLET 268 (289)
Q Consensus 255 lSlK~~~~~p~~~~ 268 (289)
||+|++.++||+.+
T Consensus 81 LSlk~~~~~~~~~~ 94 (103)
T 2eqs_A 81 LSMKDVDQETGEDL 94 (103)
T ss_dssp EESTTBCTTTCCBC
T ss_pred EEEeecccCCchhc
Confidence 99999999999865
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.54 E-value=9.9e-15 Score=113.90 Aligned_cols=93 Identities=18% Similarity=0.426 Sum_probs=75.9
Q ss_pred hhhHHHHHHHhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEe
Q 022938 86 SSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164 (289)
Q Consensus 86 ~~~~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd 164 (289)
...+|+.+...++.|+++.|+|+++.++|+||+++ |++||+|.+++++.....++.+.++ +||.|+|+|+++|
T Consensus 17 ~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~------vGd~V~vkV~~vd 90 (115)
T 2khi_A 17 RGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN------VGDVVEVMVLDID 90 (115)
T ss_dssp ----CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCC------TTCEEEEEEEEEE
T ss_pred ccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEEC------CCCEEEEEEEEEE
Confidence 34466665566899999999999999999999998 8999999999987422266776665 9999999999999
Q ss_pred cCCcEEEEEeec---chhhhccc
Q 022938 165 EEMKKLVFSEKD---AVWNKYSS 184 (289)
Q Consensus 165 ~~~~ri~lS~k~---~~~~~~~~ 184 (289)
.+++++.||++. +||+...+
T Consensus 91 ~~~~rI~lslk~~~~~p~~~~~~ 113 (115)
T 2khi_A 91 EERRRISLGLKQCKANPWQQFAE 113 (115)
T ss_dssp TTTTEEEECCCCCCSSCCCCCCC
T ss_pred CCCCEEEEEEEecCcCHHHHHHh
Confidence 989999999996 57776544
No 14
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.53 E-value=7.6e-15 Score=122.59 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=76.3
Q ss_pred cCCCEEEEEEEEEEcCcEEEEE---CCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRF---FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l---~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
+.|+++.|+|+++.++|+||++ +|++|+||.+++++.+. .+|.+.++ +||.|+|+|+++|++++++.||+
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v-~~~~~~~~------vGd~V~vkVl~vd~~~~~I~LSl 86 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRI-RSIQKLIR------VGKNDVAVVLRVDKEKGYIDLSK 86 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC---------CCCCCCC------TTSEEEEEEEEEETTTTEEEEES
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCccc-CCHHHcCC------CCCEEEEEEEEEECCCCeEEEEE
Confidence 4899999999999999999999 58999999999999886 88888887 99999999999999999999999
Q ss_pred ec---chhhhcccccccccEEEe
Q 022938 175 KD---AVWNKYSSRVNVEDIFVG 194 (289)
Q Consensus 175 k~---~~~~~~~~~~~~G~iv~G 194 (289)
+. .+|....+.+++|+.+.|
T Consensus 87 k~~~~~~~~~~~~~~~~g~~v~g 109 (175)
T 2a19_A 87 RRVSSEDIIKCEEKYQKSKTVHS 109 (175)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHhccCCCcceE
Confidence 96 488888889999998888
No 15
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.50 E-value=1.1e-14 Score=131.42 Aligned_cols=89 Identities=28% Similarity=0.480 Sum_probs=80.9
Q ss_pred cccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecC
Q 022938 186 VNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 260 (289)
Q Consensus 186 ~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~ 260 (289)
.++|+++.| ++||+||+|+..+ ++.||+|+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~---gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYN---NIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTT---SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCC---CeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 358999999 8999999994112 39999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhCCCCh
Q 022938 261 EEDPLLETLEKVIPQGL 277 (289)
Q Consensus 261 ~~~p~~~~~~~~~~g~~ 277 (289)
.++||....+++..|+.
T Consensus 88 ~~~p~~~~~~~~~~G~~ 104 (308)
T 1q8k_A 88 SPEEAIKCEDKFTKSKT 104 (308)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHccCCCe
Confidence 99999999999988865
No 16
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.50 E-value=2e-14 Score=128.17 Aligned_cols=89 Identities=30% Similarity=0.511 Sum_probs=80.6
Q ss_pred ccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecCC
Q 022938 187 NVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261 (289)
Q Consensus 187 ~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~ 261 (289)
++|+++.| .+||+||+|+..+| +.||||+|+++++++.++.+.|++||.|.|+|+++|+++++|.||+|++.
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~g---ieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~ 86 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPG---KEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVT 86 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTT---CEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCC---eEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 58999999 89999999952134 99999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhCCCChH
Q 022938 262 EDPLLETLEKVIPQGLE 278 (289)
Q Consensus 262 ~~p~~~~~~~~~~g~~~ 278 (289)
++||....+++..|...
T Consensus 87 ~~~~~~~~~~~~~g~~v 103 (275)
T 3aev_A 87 QQQRKAKLQEFKRAQKA 103 (275)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHhccCCCeE
Confidence 99999998888877653
No 17
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.50 E-value=1.3e-13 Score=100.56 Aligned_cols=69 Identities=32% Similarity=0.523 Sum_probs=62.0
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEec
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~ 259 (289)
++++|+++.| +++|+||+++ +| +.||+|+|++++.++ +.|++||.|+|+|+++|+++++|.||+|+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~--~~---~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLN--EQ---VRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE--TT---EEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEEC--CC---CEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 4688999999 8999999997 55 999999999998765 67999999999999999989999999999
Q ss_pred CCC
Q 022938 260 LEE 262 (289)
Q Consensus 260 ~~~ 262 (289)
+.+
T Consensus 73 ~~~ 75 (80)
T 2k52_A 73 LEH 75 (80)
T ss_dssp CC-
T ss_pred ccc
Confidence 875
No 18
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.43 E-value=3.7e-14 Score=128.07 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=88.9
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC---CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~---gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
+.|+++.|+|+++.++|+||+++ |++||||.++++|.+. .+|.+.++ +||.|.|+|+++|++++++.||+
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i-~~~~~~~k------vGd~V~VkVl~vD~~~~rI~LSl 84 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRI-RSINKLIR------IGRNECVKVIRVDKEKGYIDLSK 84 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSC-SCCTTTCS------SSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccc-cCHHHhcC------CCCEEEEEEEEEeCCCCEEEEEE
Confidence 58999999999999999999994 7999999999999886 78888887 99999999999999999999999
Q ss_pred ec---chhhhcccccccccEEEe-----ee-eeEEEE
Q 022938 175 KD---AVWNKYSSRVNVEDIFVG-----RD-YGAFIH 202 (289)
Q Consensus 175 k~---~~~~~~~~~~~~G~iv~G-----~~-~G~fV~ 202 (289)
|. .||......+++|+++.| .+ +|+|++
T Consensus 85 K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 85 RRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred EecccChHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 96 589888889999999988 55 698764
No 19
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=99.42 E-value=2.6e-14 Score=130.47 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=109.3
Q ss_pred eEeecccccccCCcccccCCCeEEEEEEEEeCCCCeEeeeeecccccCCcchhhhhhhhhhhhHHHHHHHhhcCCCEEEE
Q 022938 26 LSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAARAYKESGFIYEG 105 (289)
Q Consensus 26 ~~~~l~~~~~~~p~~~~~vG~~v~~~Vl~~d~~~~~i~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~iv~g 105 (289)
..++|+++.-.+|. +.+|+.+++.|...+. +|+.+...+ ..+.+.++++++...|+++. .+.|++++|
T Consensus 73 ~~Isl~ea~~~d~~--~~vGd~ie~~I~~~df--gR~aa~~aK------qvi~qkireaere~i~~e~~--~~~GeIV~G 140 (344)
T 1hh2_P 73 TQISLEEAKKIDPL--AEVGSIVKKELNVKNF--GRIAAQTAK------QVLIQRIRELEKEKQFEKYS--ELKGTVTTA 140 (344)
T ss_dssp SCEEHHHHHHHCTT--CCTTCEEEEECCCCCS--SSCSGGGHH------HHHHHHHHHHTTCCSSCCTT--CCTTCEEEE
T ss_pred cEEeHHHHhhhCcc--ccCCCEEEEEEccccC--ccHHHHHHH------HHHHHHHHHHHHHHHHHHHh--hcCCCEEEE
Confidence 35777888777774 8999999999966654 555555322 22445566666555554431 248999999
Q ss_pred EEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCc--EEEEEeecchhhhcc
Q 022938 106 KIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK--KLVFSEKDAVWNKYS 183 (289)
Q Consensus 106 ~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~--ri~lS~k~~~~~~~~ 183 (289)
+|.+++++|+||++|+.+|+||.+|++ |.+.++ +||+|+|+|++++.+.+ ++.||++.+.+.+.+
T Consensus 141 ~V~ri~~~~v~VDlGk~EgiLp~sE~i-------p~E~~~------vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~L 207 (344)
T 1hh2_P 141 EVIRVMGEWADIRIGKLETRLPKKEWI-------PGEEIK------AGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGL 207 (344)
T ss_dssp EEEEECSSEEEEEETTEEEEEEGGGSC-------TTCCCC------TTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHH
T ss_pred EEEEEecCcEEEEeCCeEEEEeHHHcC-------CCcCCC------CCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHH
Confidence 999999999999999999999999986 344454 99999999999997654 899999988777777
Q ss_pred cccccccEEEe
Q 022938 184 SRVNVEDIFVG 194 (289)
Q Consensus 184 ~~~~~G~iv~G 194 (289)
.++++.++.+|
T Consensus 208 felEVPEI~dG 218 (344)
T 1hh2_P 208 MKLEIPEVENG 218 (344)
T ss_dssp HHHHCHHHHHS
T ss_pred HHhhcccceee
Confidence 77777666655
No 20
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.41 E-value=1.1e-12 Score=104.51 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=68.4
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEee
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k 175 (289)
++.|+++.|+|+++.++|+||+++ +++||||.+++++.+. .++.+.++ +||.|.|+|+++|.+.+++.||++
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~-~~~~~~~~------vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFV-KDINEHLS------VGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCC-SCGGGTCC------TTCEEEEEEEEEETTTTEEEEESH
T ss_pred CCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccc-cCccccCC------CCCEEEEEEEEEeCCCCEEEEEEe
Confidence 579999999999999999999997 9999999999999886 77777776 999999999999998999999999
Q ss_pred cc
Q 022938 176 DA 177 (289)
Q Consensus 176 ~~ 177 (289)
..
T Consensus 78 ~~ 79 (130)
T 2k4k_A 78 AT 79 (130)
T ss_dssp HH
T ss_pred ec
Confidence 64
No 21
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.40 E-value=4.7e-14 Score=125.33 Aligned_cols=90 Identities=29% Similarity=0.415 Sum_probs=81.3
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEec
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 259 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~ 259 (289)
.+++|+++.| .++|+||+++..+ ++.||+|+|+++++++.++.+.|++||.|.|+|+++|+++++|.||+|+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~---~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYG---GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTT---SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCC---CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 4688999999 8999999994113 3999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHhhhhCCCCh
Q 022938 260 LEEDPLLETLEKVIPQGL 277 (289)
Q Consensus 260 ~~~~p~~~~~~~~~~g~~ 277 (289)
+.++||....+++..|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~ 102 (266)
T 3cw2_C 85 VTDDERRKKNLQWKKIQR 102 (266)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHhccccCc
Confidence 999999999988888753
No 22
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.40 E-value=1.8e-12 Score=94.40 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=62.6
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEee
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k 175 (289)
++.|+++.|+|+++.++|+||+++ +++|++|.+++++.+. +.+ .+||.|+|+|+++|++++++.||++
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~-----~~~------~~Gd~V~v~V~~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL-----ENL------NVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG-----GGC------CTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc-----eee------CCCCEEEEEEEEEECCCCEEEEEEe
Confidence 478999999999999999999999 9999999999987542 333 3999999999999999999999998
Q ss_pred cc
Q 022938 176 DA 177 (289)
Q Consensus 176 ~~ 177 (289)
+.
T Consensus 72 ~~ 73 (80)
T 2k52_A 72 PL 73 (80)
T ss_dssp SC
T ss_pred ec
Confidence 64
No 23
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.38 E-value=6.2e-13 Score=98.64 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=63.0
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC---CEEEEeecC-CCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF---SLVGFLPFP-QMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~---gv~g~ip~s-els~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~l 172 (289)
.+.|+++.|+|+ ++++|+||+++ |++|++|.| ++++.+. .++.+.+ +||.|+|+|+++|.+++++.|
T Consensus 9 ~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~-~~~~~~~-------~Gd~V~VkV~~vd~~~~kI~l 79 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRY-VEYRDKL-------VGKTVKVKVIRVDYTKGYIDV 79 (88)
T ss_dssp CCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHH-HHHHHHH-------TTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccc-cCHhHEe-------CCCEEEEEEEEEECCCCEEEE
Confidence 378999999999 99999999994 699999999 9998765 4444332 899999999999999999999
Q ss_pred Eeecc
Q 022938 173 SEKDA 177 (289)
Q Consensus 173 S~k~~ 177 (289)
|+|+.
T Consensus 80 slk~~ 84 (88)
T 1luz_A 80 NYKRM 84 (88)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 99874
No 24
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=107.84 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred HHHHHHHhhcCCCEEEEEEEEEEcCcEEEEECC--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 89 ~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
.|+.+...++.|+++.|+|+++.++|+||++++ .+||||.+++++.+. .++.+.++ +||.|+|+|+++|.+
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~-~~~~~~~~------~Gd~V~VkV~~vd~~ 84 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRV-DKPSEIVD------VGDKVWVKLIGREMK 84 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCC-SCHHHHCC------TTCEEEEEEEEEEEC
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccc-cChhhcCC------CCCEEEEEEEEEecc
Confidence 344444456899999999999999999999975 599999999999876 77777776 999999999999986
Q ss_pred C--cEEEEEeecc
Q 022938 167 M--KKLVFSEKDA 177 (289)
Q Consensus 167 ~--~ri~lS~k~~ 177 (289)
+ +++.||++..
T Consensus 85 ~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 85 NDRIKVSLSMKVV 97 (119)
T ss_dssp SSCEEEEEESTTB
T ss_pred ccCceEEEEEeec
Confidence 4 6999999974
No 25
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.32 E-value=1.4e-12 Score=116.12 Aligned_cols=98 Identities=10% Similarity=0.151 Sum_probs=86.0
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC---CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~---gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
+.|+++.|+|+++.++|+||+++ |++||||.+++++.+. .+|.+.++ +||.|.|+|+++|++++++.||+
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v-~~~~~~~k------vGd~V~vkVi~vD~~~~~I~LSl 82 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWV-RNIRDYLK------EGQKVVAKVIRVDPRKGHIDLSL 82 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCC-SCGGGTCC------TTCEEEEEEEEEETTTTEEEEES
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccc-cCHHhccC------CCCEEEEEEEEEECCCCEEEEEE
Confidence 58999999999999999999995 7999999999999886 77887776 99999999999999999999999
Q ss_pred ec---chhhhcccccccccEEEe-----e-eeeEEEE
Q 022938 175 KD---AVWNKYSSRVNVEDIFVG-----R-DYGAFIH 202 (289)
Q Consensus 175 k~---~~~~~~~~~~~~G~iv~G-----~-~~G~fV~ 202 (289)
+. .+|......++.|+.+.| . ++|++++
T Consensus 83 k~~~~~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 83 RRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred eecCcchhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 97 478777788888888877 3 6666544
No 26
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-12 Score=96.12 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=63.6
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC----CEEEEeecCCC-CCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF----SLVGFLPFPQM-SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLV 171 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~----gv~g~ip~sel-s~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~ 171 (289)
++.|+++.|+|+++.++|+||+++ +++||||.+++ ++.+. .++.+.++ +||.|+|+|+++|. +++.
T Consensus 10 ~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~-~~~~~~~~------~Gd~V~VkV~~vd~--~~i~ 80 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRV-ANVADVVS------KGQRVKVKVLSFTG--TKTS 80 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCC-CCHHHHCC------TTCEEEEEEEEEET--TEEE
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCccc-CCcccEeC------CCCEEEEEEEEEEC--CeeE
Confidence 579999999999999999999998 69999999999 55554 66777666 99999999999996 6999
Q ss_pred EEeecc
Q 022938 172 FSEKDA 177 (289)
Q Consensus 172 lS~k~~ 177 (289)
||+|..
T Consensus 81 LSlk~~ 86 (103)
T 2eqs_A 81 LSMKDV 86 (103)
T ss_dssp EESTTB
T ss_pred EEEeec
Confidence 999973
No 27
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.30 E-value=2.4e-14 Score=143.20 Aligned_cols=128 Identities=17% Similarity=0.323 Sum_probs=46.0
Q ss_pred EEEEE--EEcCcEEEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEeecchhhhc
Q 022938 105 GKIQG--FNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKY 182 (289)
Q Consensus 105 g~V~~--v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k~~~~~~~ 182 (289)
|++.+ ..++|++|++++ +|.++++..++... .. .-+ +|.. + . .|
T Consensus 617 Gk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~-~~------------a~~----~i~~-------i----~-~p---- 662 (757)
T 1e3p_A 617 RQMINQIQEDTGAEITIED-DGTIYIGAADGPAA-EA------------ARA----TING-------I----A-NP---- 662 (757)
T ss_dssp ----CTTCCCCCSCC---------CCCBSSHHHH-CC-------------------------------------------
T ss_pred ceeeehhhHhhCCEEEecC-CceEEEecCCHHHH-HH------------HHH----HHHH-------h----c-ch----
Confidence 44555 457899999986 89999888664321 00 000 0000 0 0 11
Q ss_pred ccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCc----CcccccCcccccCCCCEEEEEEEEEeCCCCeE
Q 022938 183 SSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEV----SWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 253 (289)
Q Consensus 183 ~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sel----s~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri 253 (289)
.++++|+++.| .+||+||+|. +| +.||+|+|++ +|+++.++.+.|++||.|+|+|+++|+ ++||
T Consensus 663 -~~~~vG~i~~G~V~~i~~fGaFV~l~--~g---~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI 735 (757)
T 1e3p_A 663 -TSPEVGERILGSVVKTTTFGAFVSLL--PG---KDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKL 735 (757)
T ss_dssp -----------CBEEECC-CSCEECCC--------CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-
T ss_pred -hhcccccEEEEEEEEccccEEEEEEc--CC---cEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCE
Confidence 56799999999 8999999995 55 9999999999 999999999999999999999999998 9999
Q ss_pred EEEEecCCCCchhHHhhhhC
Q 022938 254 TLSIKQLEEDPLLETLEKVI 273 (289)
Q Consensus 254 ~lSlK~~~~~p~~~~~~~~~ 273 (289)
.||+|++.++||....+++.
T Consensus 736 ~LS~k~~~~~pw~~~~~~~~ 755 (757)
T 1e3p_A 736 SLIPVIEGEEAASDEKKDDA 755 (757)
T ss_dssp --------------------
T ss_pred EEEEecCCCCchhhhhhccc
Confidence 99999999999998877664
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.22 E-value=9.4e-13 Score=130.79 Aligned_cols=88 Identities=30% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeE
Q 022938 179 WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 253 (289)
Q Consensus 179 ~~~~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri 253 (289)
++....++++|++|.| .+||+||+|. +| +.||+|+|+++|+++.++.+.|++||.|+|+|+++|+ ++||
T Consensus 628 i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~--~g---~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI 701 (726)
T 4aid_A 628 IKSITDEAEVGKIYDGKVVKVVDFGAFVNFF--GA---KDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKT 701 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhcCCcEEEEEEEEEeccEEEEEEC--CC---cEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcE
Confidence 4556788999999999 9999999996 55 9999999999999999999999999999999999998 8999
Q ss_pred EEEEecCCCCchhHHhhhh
Q 022938 254 TLSIKQLEEDPLLETLEKV 272 (289)
Q Consensus 254 ~lSlK~~~~~p~~~~~~~~ 272 (289)
.||+|++.++||.++.++.
T Consensus 702 ~LS~K~~~~~~G~~~~~k~ 720 (726)
T 4aid_A 702 KLSMKVVDQETGEDLSKKE 720 (726)
T ss_dssp -------------------
T ss_pred EEEEeecccCcchhhhhhh
Confidence 9999999999999875543
No 29
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.14 E-value=1.2e-11 Score=109.82 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=72.7
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEE---CCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRF---FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l---~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
++.|+++.|+|+++.++|+||++ +|.+||||.+++++.+. .++.+.++ +||.|.|+|+++|.+++++.||
T Consensus 9 ~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v-~~~~~~~~------vGd~V~VkVi~vd~~~g~I~LS 81 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWV-KNIRDVLK------ENRKVIVKVIRVDRRKGTVDVS 81 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSC-CCHHHHSC------TTCEEEEEECCCCSSSCCCBEE
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccc-cCHHHhCc------CCCEEEEEEEEEeCCCCEEEEE
Confidence 47999999999999999999999 57999999999999886 77777776 9999999999999889999999
Q ss_pred eec---chhhhcccccccc
Q 022938 174 EKD---AVWNKYSSRVNVE 189 (289)
Q Consensus 174 ~k~---~~~~~~~~~~~~G 189 (289)
++. .+|......++.|
T Consensus 82 lk~~~~~~~~~~~~~~~~~ 100 (266)
T 3cw2_C 82 LKKVTDDERRKKNLQWKKI 100 (266)
T ss_dssp STTSCTTHHHHHHHHHHHH
T ss_pred EEecchhhHHHHHHhcccc
Confidence 986 3554433333333
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.14 E-value=4.5e-12 Score=126.31 Aligned_cols=85 Identities=34% Similarity=0.628 Sum_probs=0.0
Q ss_pred hhhcccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeE
Q 022938 179 WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 253 (289)
Q Consensus 179 ~~~~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri 253 (289)
++....++++|+++.| .+||+||++. +| +.||+|+|+++|+++.++.+.|++||.|+|+|+++|+ ++||
T Consensus 618 i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~--~g---~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI 691 (723)
T 3cdi_A 618 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIG--GG---KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRI 691 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhcCcEEEEEEEEEecceEEEEeC--CC---ceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcE
Confidence 3445678899999999 9999999996 55 9999999999999999999999999999999999998 9999
Q ss_pred EEEEecCCCCchhHHh
Q 022938 254 TLSIKQLEEDPLLETL 269 (289)
Q Consensus 254 ~lSlK~~~~~p~~~~~ 269 (289)
.||+|++.++||....
T Consensus 692 ~LS~k~~~~~~g~~~~ 707 (723)
T 3cdi_A 692 RLSIKEATEQSQPAAA 707 (723)
T ss_dssp ----------------
T ss_pred EEEEEeccCCCCcccC
Confidence 9999999999998754
No 31
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.07 E-value=1.1e-10 Score=91.38 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=61.9
Q ss_pred cccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEEE
Q 022938 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 255 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sel-s~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~l 255 (289)
.+.++++|+++.| .+||+||+|+ .++ ..|++|.++. +|.+..++.+.|++||.|+|+|+++|+++++|.|
T Consensus 15 ~~~~l~~G~i~~G~V~~v~~fG~fV~l~-~~~---~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~L 90 (119)
T 1wi5_A 15 SAEALKPGMLLTGTVSSLEDHGYLVDIG-VDG---TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 90 (119)
T ss_dssp CTTTCCTTCEEEEEEEEECSSEEEEECC-CSS---CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEE
T ss_pred cHhcCCCCCEEEEEEEEEeCceEEEEEC-CCC---eEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEE
Confidence 3568899999999 8999999995 223 6677666554 2444567889999999999999999999999999
Q ss_pred EEecCC
Q 022938 256 SIKQLE 261 (289)
Q Consensus 256 SlK~~~ 261 (289)
|+|+..
T Consensus 91 slk~~~ 96 (119)
T 1wi5_A 91 SVGHSE 96 (119)
T ss_dssp ECCCCC
T ss_pred EEchhh
Confidence 999754
No 32
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.07 E-value=7.4e-11 Score=92.33 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=62.1
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC--CEEEEeecCCCC-CCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMS-PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels-~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
++.|++++|+|++++++|+||+++ +..|++|.+++. +... .+|.+.++ +||.|+|+|+++|.+++++.||
T Consensus 19 l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~------~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 19 LKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQ-KNKGAKLK------VGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHH-HSSSCCCC------TTCEEEEEEEECCTTSCEEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccc-cCccCEeC------CCCEEEEEEEEEeCCCCEEEEE
Confidence 689999999999999999999998 688888877652 2221 35666665 9999999999999989999999
Q ss_pred eecc
Q 022938 174 EKDA 177 (289)
Q Consensus 174 ~k~~ 177 (289)
+++.
T Consensus 92 lk~~ 95 (119)
T 1wi5_A 92 VGHS 95 (119)
T ss_dssp CCCC
T ss_pred Echh
Confidence 9975
No 33
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.07 E-value=5e-10 Score=94.35 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=64.3
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccC----------cCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSC----------KEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~----------~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
...|++++|+|++++++|+||++++.+|++|.+++++.+.. .++.+.++ +||.|+|+|+++|.+
T Consensus 79 ~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~------~Gd~V~vkV~~vd~~ 152 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLE------IGDYVRARIVAISLK 152 (187)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEEC------TTCEEEEEEEEEECC
T ss_pred cCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeEEc------CCCEEEEEEEEEEcc
Confidence 37899999999999999999999999999999999877642 14555555 999999999999987
Q ss_pred Cc-----EEEEEeecc
Q 022938 167 MK-----KLVFSEKDA 177 (289)
Q Consensus 167 ~~-----ri~lS~k~~ 177 (289)
.+ ++.+|++..
T Consensus 153 ~~~p~~~~I~lS~k~~ 168 (187)
T 1go3_E 153 AERKRGSKIALTMRQP 168 (187)
T ss_dssp C-----CEEEEECCST
T ss_pred cCCCCccEEEEEEcCC
Confidence 55 999999984
No 34
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.03 E-value=4.3e-10 Score=94.77 Aligned_cols=76 Identities=26% Similarity=0.522 Sum_probs=64.2
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCccccc-----------CcccccCCCCEEEEEEEEEeC
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-----------DIRDILNEGDEVRVKVIKIDR 248 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~-----------~~~~~~~iGd~V~vkV~~id~ 248 (289)
...+|+++.| +++|+||+++ + .+|++|+|+++++++. ++.+.|++||.|+|+|+++|.
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~--~----~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 151 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLG--P----LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISL 151 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--S----SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEc--C----ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEc
Confidence 4678999999 8999999995 2 8999999999988765 778899999999999999998
Q ss_pred CCC-----eEEEEEecCC--CCchh
Q 022938 249 EKS-----RITLSIKQLE--EDPLL 266 (289)
Q Consensus 249 e~~-----ri~lSlK~~~--~~p~~ 266 (289)
+++ +|.||+|+.. +.+|-
T Consensus 152 ~~~~p~~~~I~lS~k~~~LG~~~w~ 176 (187)
T 1go3_E 152 KAERKRGSKIALTMRQPYLGKLEWI 176 (187)
T ss_dssp CC-----CEEEEECCSTTCEEHHHH
T ss_pred ccCCCCccEEEEEEcCCCCCcHHHH
Confidence 755 9999999954 44443
No 35
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.2e-10 Score=119.38 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=69.1
Q ss_pred cccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEE
Q 022938 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 255 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~-~~~~~~~~~iGd~V~vkV~~id~e~~ri~l 255 (289)
...++++|+++.| ++||+||+|+ .| +.|+||+|++++.+ +.++.+.|++||.|+|+|+++|+++++|.|
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~--~g---veGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~L 970 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTN--SE---VECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEV 970 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECT--TS---CEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEE
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeC--CC---ceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEE
Confidence 4588999999999 8999999995 55 99999999999998 789999999999999999999999999999
Q ss_pred EEecCC
Q 022938 256 SIKQLE 261 (289)
Q Consensus 256 SlK~~~ 261 (289)
|+|...
T Consensus 971 Slk~~d 976 (1219)
T 3psi_A 971 SLLDHD 976 (1219)
T ss_dssp ECCHHH
T ss_pred EecHHH
Confidence 999653
No 36
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.7e-10 Score=116.31 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=71.0
Q ss_pred HhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 95 AYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 95 ~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
+.+++|++++|+|++|.++|+||+++ |++|+||++++++.+...+|.+.++ +||.|+|+|+++|.+++++.||
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~k------vGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYE------IGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSC------TTCEEEEEEEEEEGGGTEEEEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCC------CCCEEEEEEEEEECCCCEEEEE
Confidence 56789999999999999999999999 9999999999999873378888887 9999999999999999999999
Q ss_pred eecc
Q 022938 174 EKDA 177 (289)
Q Consensus 174 ~k~~ 177 (289)
++..
T Consensus 972 lk~~ 975 (1219)
T 3psi_A 972 LLDH 975 (1219)
T ss_dssp CCHH
T ss_pred ecHH
Confidence 9863
No 37
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.99 E-value=3.7e-10 Score=94.60 Aligned_cols=80 Identities=29% Similarity=0.594 Sum_probs=64.3
Q ss_pred ccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc-----------cCcccccCCCCEEEEEEEEE
Q 022938 183 SSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----------QDIRDILNEGDEVRVKVIKI 246 (289)
Q Consensus 183 ~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~-----------~~~~~~~~iGd~V~vkV~~i 246 (289)
.....+|+++.| +++|+||+++ + .+|++|++++++++. ++....|++||.|++||+++
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~--~----~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v 149 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG--P----MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS--S----SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEE
T ss_pred eeeccCCCEEEEEEeeeccceEEEEEC--C----ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEE
Confidence 345688999999 9999999995 2 899999999998866 46777899999999999999
Q ss_pred eCC----CCeEEEEEec--CCCCchhHH
Q 022938 247 DRE----KSRITLSIKQ--LEEDPLLET 268 (289)
Q Consensus 247 d~e----~~ri~lSlK~--~~~~p~~~~ 268 (289)
|++ ..||.||+|+ +-+.+|-+.
T Consensus 150 ~~~~~~~~~rI~ls~k~~gLG~~~W~~~ 177 (180)
T 4ayb_E 150 ASTVTGRLPRIALTMRQPYLGKLEWITQ 177 (180)
T ss_dssp CC-------CEEEECCSTTCEEHHHHTT
T ss_pred eCCCCcccCcEEEEcCCCCCCCChhHhh
Confidence 864 4589999998 445555543
No 38
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.96 E-value=1.9e-10 Score=115.45 Aligned_cols=75 Identities=28% Similarity=0.536 Sum_probs=68.7
Q ss_pred cccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 022938 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lS 256 (289)
.+.++++|+++.| ++||+||+++ .| ++||||+|++++.++.++.+.|++||.|+|+|+++|+++++|.||
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~--~~---~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LS 722 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIG--VH---QDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECS--SS---SEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEEC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeC--CC---cEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEE
Confidence 3567899999988 8999999996 44 899999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 022938 257 IKQLE 261 (289)
Q Consensus 257 lK~~~ 261 (289)
+|...
T Consensus 723 lk~~~ 727 (785)
T 3bzc_A 723 MRMSD 727 (785)
T ss_dssp CSSCC
T ss_pred EecCC
Confidence 99754
No 39
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.96 E-value=1.9e-09 Score=90.24 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=62.1
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccC----------cCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSC----------KEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~----------~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
...|++++|+|++++++|+||+++.++|++|.+++++.+.. +++.+.++ +||.|+|||+++|.+
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~------~Gd~VrvkV~~v~~~ 152 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQ------KGDKVRARVISVAST 152 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCC------TTCEEEEEEEEECC-
T ss_pred ccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEEC------CCCEEEEEEEEEeCC
Confidence 36999999999999999999999999999999999987652 23444444 999999999999864
Q ss_pred C----cEEEEEeecc
Q 022938 167 M----KKLVFSEKDA 177 (289)
Q Consensus 167 ~----~ri~lS~k~~ 177 (289)
. .+|.+|+|++
T Consensus 153 ~~~~~~rI~ls~k~~ 167 (180)
T 4ayb_E 153 VTGRLPRIALTMRQP 167 (180)
T ss_dssp ------CEEEECCST
T ss_pred CCcccCcEEEEcCCC
Confidence 3 4899999984
No 40
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.92 E-value=3.6e-10 Score=113.39 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=69.2
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEee
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k 175 (289)
+++|++++|+|++|.++|+||+++ +++|+||++++++.+. .+|.+.++ +||.|+|+|+++|.+++++.||++
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v-~d~~~~~~------vGd~V~VkVi~VD~~~~rI~LSlk 724 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFV-KDPYEVVK------AGDIVKVKVMEVDIPRNRVGLSMR 724 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCC-SCHHHHCC------TTCCCCCBEEEEETTTTEEEECCS
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCcccc-CChhheeC------CCCEEEEEEEEEECCCCEEEEEEe
Confidence 689999999999999999999999 8999999999999876 78888876 999999999999999999999998
Q ss_pred cc
Q 022938 176 DA 177 (289)
Q Consensus 176 ~~ 177 (289)
..
T Consensus 725 ~~ 726 (785)
T 3bzc_A 725 MS 726 (785)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 41
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.1e-10 Score=119.86 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=0.4
Q ss_pred cccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEE
Q 022938 182 YSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 255 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~-~~~~~~~~~iGd~V~vkV~~id~e~~ri~l 255 (289)
...++++|+++.| ++||+||+|+ .| +.|+||+|++++.+ +.++.+.|++||.|+|+|+++|+++++|.|
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~--~g---veGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~L 973 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTN--SE---VECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEV 973 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeC--CC---cEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEE
Confidence 3478999999999 9999999996 55 99999999999998 799999999999999999999999999999
Q ss_pred EEecCC
Q 022938 256 SIKQLE 261 (289)
Q Consensus 256 SlK~~~ 261 (289)
|+|...
T Consensus 974 Slk~~d 979 (1030)
T 3psf_A 974 SLLDHD 979 (1030)
T ss_dssp ------
T ss_pred EechHH
Confidence 999854
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.92 E-value=1.2e-10 Score=115.72 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=1.0
Q ss_pred hHHHHHHHhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 88 ADWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 88 ~~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
..|+.+...++.|++++|+|+++.++|+||++. |++|+||+|++++.++ .++.+.++ +||.|+|+|+++|+
T Consensus 626 ~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv-~~~~d~~k------vGD~V~VkVi~iD~- 697 (726)
T 4aid_A 626 DWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERV-AKPSDVLK------EGQMVKVKLLGFDD- 697 (726)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccc-cCccccCC------CCCEEEEEEEEECC-
Confidence 457777778899999999999999999999998 8999999999999887 78888887 99999999999997
Q ss_pred CcEEEEEeecc
Q 022938 167 MKKLVFSEKDA 177 (289)
Q Consensus 167 ~~ri~lS~k~~ 177 (289)
++|+.||+|..
T Consensus 698 ~grI~LS~K~~ 708 (726)
T 4aid_A 698 RGKTKLSMKVV 708 (726)
T ss_dssp -----------
T ss_pred CCcEEEEEeec
Confidence 78999999974
No 43
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.89 E-value=2.3e-09 Score=91.78 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=65.3
Q ss_pred cccccccEEEe-----eeeeEEEEEecCCC---ceeEEEEEEccCcCccccc--CcccccCCCCEEEEEEEEEeCCCCeE
Q 022938 184 SRVNVEDIFVG-----RDYGAFIHLRFPDG---LYHLTGLVHVSEVSWDLIQ--DIRDILNEGDEVRVKVIKIDREKSRI 253 (289)
Q Consensus 184 ~~~~~G~iv~G-----~~~G~fV~i~~~~G---~~~i~Glv~~sels~~~~~--~~~~~~~iGd~V~vkV~~id~e~~ri 253 (289)
...++|++|.| .++|+||+|....+ ..+..|++|++++++.+.+ ++.+.|++||.|+|+|++++.+++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 36799999999 89999999852100 0037899999999998887 89999999999999999999877899
Q ss_pred EEEEecCC
Q 022938 254 TLSIKQLE 261 (289)
Q Consensus 254 ~lSlK~~~ 261 (289)
.||+|+..
T Consensus 157 ~LS~k~~~ 164 (209)
T 2nn6_I 157 LLTTAENE 164 (209)
T ss_dssp EEECCSSS
T ss_pred EEEEecCC
Confidence 99999853
No 44
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.84 E-value=3.2e-10 Score=113.09 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCC
Q 022938 89 DWKAARAYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM 167 (289)
Q Consensus 89 ~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~ 167 (289)
.++.+...++.|++++|+|+++.++|+||++. |.+||+|+|++++.++ .++.+.++ +||.|+|+|+++|. +
T Consensus 617 ~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v-~~~~~~~~------vGd~V~VkVi~vd~-~ 688 (723)
T 3cdi_A 617 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV-EKVTDYLQ------MGQEVPVKVLEVDR-Q 688 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccc-cCcccccC------CCCEEEEEEEEECC-C
Confidence 45556667899999999999999999999998 9999999999999886 88888887 99999999999997 8
Q ss_pred cEEEEEeecc
Q 022938 168 KKLVFSEKDA 177 (289)
Q Consensus 168 ~ri~lS~k~~ 177 (289)
+++.||+|..
T Consensus 689 grI~LS~k~~ 698 (723)
T 3cdi_A 689 GRIRLSIKEA 698 (723)
T ss_dssp ----------
T ss_pred CcEEEEEEec
Confidence 9999999963
No 45
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.83 E-value=1.1e-08 Score=84.90 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCccc----chh--cccccCCCCEEEEEEEEEecCCc--E
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK----SIH--EIAKGLTGSIISVKVIQANEEMK--K 169 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~----~~~--~~~~~~vG~~V~vkVl~vd~~~~--r 169 (289)
..|++++|+|++++++|+||+++..+|++|.+++++.+. .+|.+ ... ...-+.+||.|+|+|.++|.+.+ .
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~-~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEME-FDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEE-EESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcE-ECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 689999999999999999999997889999999986533 22221 000 00123499999999999998765 2
Q ss_pred EEEEeec
Q 022938 170 LVFSEKD 176 (289)
Q Consensus 170 i~lS~k~ 176 (289)
.+.|+++
T Consensus 159 ~igsm~~ 165 (172)
T 2c35_B 159 AIGSLMD 165 (172)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 3337765
No 46
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.6e-10 Score=116.14 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=0.0
Q ss_pred HhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 95 AYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 95 ~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
+.+++|++++|+|++|.++|+||+++ |++|+||++++++.+...+|.+.++ +||.|+|+|+++|.+++++.||
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~k------vGd~V~vkVl~VD~~~~rI~LS 974 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYE------IGKTYPAKVIYIDYANITAEVS 974 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCC------CCCEEEEEEEEEECCCCEEEEE
Confidence 56789999999999999999999999 9999999999999873378888887 9999999999999999999999
Q ss_pred eecch
Q 022938 174 EKDAV 178 (289)
Q Consensus 174 ~k~~~ 178 (289)
+|...
T Consensus 975 lk~~d 979 (1030)
T 3psf_A 975 LLDHD 979 (1030)
T ss_dssp -----
T ss_pred echHH
Confidence 99753
No 47
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.81 E-value=8.1e-09 Score=88.39 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC---------CEEEEeecCCCCCCccCc--CcccchhcccccCCCCEEEEEEEEEec
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF---------SLVGFLPFPQMSPSHSCK--EPQKSIHEIAKGLTGSIISVKVIQANE 165 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~---------gv~g~ip~sels~~~~~~--~p~~~~~~~~~~~vG~~V~vkVl~vd~ 165 (289)
.+.|+++.|+|+++.++|+||+++ +.+|+||.+|+++.+. . ++.+.|+ +||.|+|+|++++.
T Consensus 79 p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~-~~~~~~~~l~------~GD~V~akVisi~~ 151 (209)
T 2nn6_I 79 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEK-DKVEIYKSFR------PGDIVLAKVISLGD 151 (209)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSS-CCCCGGGTCC------SSSEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccc-cccchhhhcC------CCCEEEEEEEEEeC
Confidence 589999999999999999999984 5789999999998775 4 5666666 99999999999997
Q ss_pred CCcEEEEEeecch
Q 022938 166 EMKKLVFSEKDAV 178 (289)
Q Consensus 166 ~~~ri~lS~k~~~ 178 (289)
+++++.||.+...
T Consensus 152 ~~~~i~LS~k~~~ 164 (209)
T 2nn6_I 152 AQSNYLLTTAENE 164 (209)
T ss_dssp TTTEEEEECCSSS
T ss_pred CCCeEEEEEecCC
Confidence 7789999999853
No 48
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.80 E-value=2e-08 Score=83.29 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=57.0
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccc----hhcccccCCCCEEEEEEEEEecCCcE--EE
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS----IHEIAKGLTGSIISVKVIQANEEMKK--LV 171 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~----~~~~~~~~vG~~V~vkVl~vd~~~~r--i~ 171 (289)
..|++++|+|++++++|+||+++..+||+|.+++++.+. .+|... ..+..-+.+||.|+|+|+++|.+.+. .+
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~-~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~i 160 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT-FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCE-ECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCce-ECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcEEE
Confidence 689999999999999999999988999999999986543 233211 00001144999999999999987642 22
Q ss_pred EEeec
Q 022938 172 FSEKD 176 (289)
Q Consensus 172 lS~k~ 176 (289)
.|+++
T Consensus 161 gsm~~ 165 (171)
T 1y14_B 161 GSIKE 165 (171)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 35554
No 49
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.79 E-value=8.8e-09 Score=86.15 Aligned_cols=67 Identities=28% Similarity=0.425 Sum_probs=59.0
Q ss_pred cccccEEEe-----eeeeEEEEEecC--------CCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCe
Q 022938 186 VNVEDIFVG-----RDYGAFIHLRFP--------DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 252 (289)
Q Consensus 186 ~~~G~iv~G-----~~~G~fV~i~~~--------~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~r 252 (289)
.+ |++|.| .++|+||+|... .+ ..|++|++++++.+..++.+.|++||.|+|+|++ ++
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~---~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~ 126 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNR---GIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DN 126 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTC---EEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TT
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccC---eeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----Ce
Confidence 46 999999 899999999720 03 8999999999999999999999999999999998 78
Q ss_pred EEEEEecCC
Q 022938 253 ITLSIKQLE 261 (289)
Q Consensus 253 i~lSlK~~~ 261 (289)
+.||+|..+
T Consensus 127 i~LS~k~~~ 135 (179)
T 3m7n_A 127 LRLSTKEEE 135 (179)
T ss_dssp TEEECCSTT
T ss_pred EEEEEecCC
Confidence 999998853
No 50
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.77 E-value=1.9e-08 Score=86.31 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=59.3
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccc----hhcccccCCCCEEEEEEEEEecCCc---EE
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS----IHEIAKGLTGSIISVKVIQANEEMK---KL 170 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~----~~~~~~~~vG~~V~vkVl~vd~~~~---ri 170 (289)
+.|++++|+|++++++|+||+++..+||+|.++|++.+. -+|... ..+..-+.+||.|+|+|+++|.+.+ ++
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~-~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT-FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCC-CBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccce-eccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEE
Confidence 699999999999999999999988999999999986543 333311 0000113499999999999998765 44
Q ss_pred EEEeecc
Q 022938 171 VFSEKDA 177 (289)
Q Consensus 171 ~lS~k~~ 177 (289)
- |++++
T Consensus 161 g-Smk~~ 166 (215)
T 2b8k_G 161 G-SIKED 166 (215)
T ss_dssp E-ECCST
T ss_pred E-EcCCC
Confidence 4 77763
No 51
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.77 E-value=3.1e-09 Score=97.38 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=95.8
Q ss_pred eEeecccccccCCcccccCCCeEEEEEEEEeCCCCeEeeeeecc---------------------cccCCcchhhhhhhh
Q 022938 26 LSLSLSSLVCVNPLIIERICQRNLCPVGKFSTNAAKITPTTVNP---------------------ILDDSSDANNRQSQS 84 (289)
Q Consensus 26 ~~~~l~~~~~~~p~~~~~vG~~v~~~Vl~~d~~~~~i~ls~k~~---------------------l~~~~~~~~~~~~~~ 84 (289)
++-.++++++....+.|...+.+.+. +|++++.+.+-.... ...++..+.+.++++
T Consensus 41 v~~aie~al~~a~kk~~~~~~~~~V~---id~~tg~~~v~~~~~~~d~~e~~~~~~~~~~fgRiaaqtaKQvI~QkiREa 117 (366)
T 1k0r_A 41 LLETIKSALLTAYRHTQGHQTDARIE---IDRKTGVVRVIARETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDA 117 (366)
T ss_dssp TTTSSTTTTTSSGGGSSSCCSSCCCC---CCSSSCCCCCCEECCCSSSSCCCEECCCCTTSTTTTTTTTTHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEE---EECCCCeEEEEEEEEecCCCEEEEEeCCHHHhCHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666544444443 366666544432211 011122234445555
Q ss_pred hhhhHHHHHHHhhcCCCEEEEEEEE----EEcCcEEEEECC----EEEEeecCCCCCCccCcCcccchhcccccCCCCEE
Q 022938 85 RSSADWKAARAYKESGFIYEGKIQG----FNGGGLLVRFFS----LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSII 156 (289)
Q Consensus 85 ~~~~~~~~l~~~~~~G~iv~g~V~~----v~~~G~~V~l~g----v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V 156 (289)
++...|+++.. +.|++++|+|.+ +.+++++|++|+ ++|+||.+|+. |.+.|+ +||+|
T Consensus 118 Er~~i~~ef~~--r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-------P~E~~~------~GDrV 182 (366)
T 1k0r_A 118 ENERTYGEFST--REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-------PGESYE------HGNRL 182 (366)
T ss_dssp C--------CC--CTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-------TTCCCC------TTCEE
T ss_pred HHHHHHHHHHh--cCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-------CCccCC------CCCEE
Confidence 55555555332 499999999999 999999999996 99999999976 445554 99999
Q ss_pred EEEEEEEecCC--cEEEEEeecchhhhcccccccccEEEe
Q 022938 157 SVKVIQANEEM--KKLVFSEKDAVWNKYSSRVNVEDIFVG 194 (289)
Q Consensus 157 ~vkVl~vd~~~--~ri~lS~k~~~~~~~~~~~~~G~iv~G 194 (289)
+|.|++++.+. .++.||+....+...+.++++-++.+|
T Consensus 183 kvyV~~V~~~~kgpqI~LSRT~p~lv~~Lfe~EVPEI~dG 222 (366)
T 1k0r_A 183 RCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADG 222 (366)
T ss_dssp EEEEEEEECCSSSCEEEEESSCHHHHHHHHHHHCHHHHTT
T ss_pred EEEEEEEecCCCccEEEEEeCChHHHHHHHHhcchhhcCC
Confidence 99999999864 489999998766655555555555444
No 52
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.72 E-value=4.5e-10 Score=112.43 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=37.7
Q ss_pred HhhcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCC----CCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcE
Q 022938 95 AYKESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQM----SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKK 169 (289)
Q Consensus 95 ~~~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sel----s~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~r 169 (289)
..++.|++++|+|+++.++|+||++. |++||+|+|++ ++.++ .+|.+.++ +||.|+|+|+++|. +++
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv-~~~~~~~~------vGd~V~VkVi~vd~-~gr 734 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRV-ENVEDVLG------VGQKVQVEIAEIDS-RGK 734 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC--------------------CC------SSCBCCCCCCCCCS-SCC
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcc-cCcccccC------CCCEEEEEEEEECC-CCC
Confidence 45789999999999999999999997 99999999999 88886 88888887 99999999999998 899
Q ss_pred EEEEeec---chhhhc
Q 022938 170 LVFSEKD---AVWNKY 182 (289)
Q Consensus 170 i~lS~k~---~~~~~~ 182 (289)
+.||++. .||...
T Consensus 735 I~LS~k~~~~~pw~~~ 750 (757)
T 1e3p_A 735 LSLIPVIEGEEAASDE 750 (757)
T ss_dssp ----------------
T ss_pred EEEEEecCCCCchhhh
Confidence 9999986 466544
No 53
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.69 E-value=1.3e-08 Score=84.60 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=58.1
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCccc---chh-cccccCCCCEEEEEEEEEecCCc---EE
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQK---SIH-EIAKGLTGSIISVKVIQANEEMK---KL 170 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~---~~~-~~~~~~vG~~V~vkVl~vd~~~~---ri 170 (289)
..|++++|+|++++++|+||+++.++||+|.++|++.+. -++.+ .+. ....+.+||.|+|+|.++|.+.+ ++
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~-~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~I 161 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMK-FDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFAI 161 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCC-CBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEEE
T ss_pred CCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccc-cCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceEE
Confidence 689999999999999999999998889999999986653 33310 000 01123499999999999998764 34
Q ss_pred EEEeec
Q 022938 171 VFSEKD 176 (289)
Q Consensus 171 ~lS~k~ 176 (289)
- |+++
T Consensus 162 g-tm~~ 166 (172)
T 3h0g_G 162 A-TMKE 166 (172)
T ss_dssp E-ECCS
T ss_pred E-EcCC
Confidence 3 6654
No 54
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.62 E-value=4.6e-08 Score=81.19 Aligned_cols=66 Identities=15% Similarity=0.317 Sum_probs=52.6
Q ss_pred ccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc----c--------CcccccCCCCEEEEEEEEEeCC
Q 022938 187 NVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI----Q--------DIRDILNEGDEVRVKVIKIDRE 249 (289)
Q Consensus 187 ~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~----~--------~~~~~~~iGd~V~vkV~~id~e 249 (289)
.+|+++.| +++|+||+++ + ..||+|+|+|++.+. . +....+++||.|+|+|+++|.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l~--~----~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~ 153 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEIG--P----MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVD 153 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEET--T----EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEEC--C----EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcC
Confidence 58999999 9999999995 3 679999999975532 2 1145799999999999999987
Q ss_pred CC---eEEEEEec
Q 022938 250 KS---RITLSIKQ 259 (289)
Q Consensus 250 ~~---ri~lSlK~ 259 (289)
.+ ++. |||+
T Consensus 154 ~~~~~~ig-sm~~ 165 (172)
T 2c35_B 154 KNDIFAIG-SLMD 165 (172)
T ss_dssp TTEEEEEE-ECCS
T ss_pred CCCcEEEE-EecC
Confidence 66 455 7765
No 55
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.61 E-value=7.8e-08 Score=80.34 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=61.4
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC-----------CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF-----------SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~-----------gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
+ |+++.|+|+++.++|+||+++ +.+|+||.+++++.+. .++.+.|+ +||.|.|+|++
T Consensus 57 ~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~-~~~~~~~~------~GD~V~akVi~---- 124 (179)
T 3m7n_A 57 K-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV-KEISEAVG------YLDILKARVIG---- 124 (179)
T ss_dssp T-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC-SSGGGTCC------TTCEEEEEEEE----
T ss_pred C-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchh-hCHhhcCC------CCCEEEEEEEC----
Confidence 7 999999999999999999986 5899999999999876 67777776 99999999996
Q ss_pred CcEEEEEeecchh
Q 022938 167 MKKLVFSEKDAVW 179 (289)
Q Consensus 167 ~~ri~lS~k~~~~ 179 (289)
+++.||.+...+
T Consensus 125 -~~i~LS~k~~~l 136 (179)
T 3m7n_A 125 -DNLRLSTKEEEM 136 (179)
T ss_dssp -TTTEEECCSTTC
T ss_pred -CeEEEEEecCCC
Confidence 789999987543
No 56
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.61 E-value=3.7e-08 Score=84.55 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=58.9
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCc----------ccccCCCCEEEEEEEEEeCC
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIKIDRE 249 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~----------~~~~~iGd~V~vkV~~id~e 249 (289)
..++|+++.| +++|+||+++ + .+||+|+|+|++.+.-++ ++.+++||.|+|+|+++|.+
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg--~----~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~ 153 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVG--P----MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQ 153 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECT--T----SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEec--C----cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcC
Confidence 3489999999 8999999995 2 799999999986533222 26699999999999999987
Q ss_pred CC---eEEEEEecCCCCchhH
Q 022938 250 KS---RITLSIKQLEEDPLLE 267 (289)
Q Consensus 250 ~~---ri~lSlK~~~~~p~~~ 267 (289)
.+ +|. |||+.-.-||..
T Consensus 154 ~~~i~~Ig-Smk~~~LG~~~~ 173 (215)
T 2b8k_G 154 VSSIHAIG-SIKEDYLGAISH 173 (215)
T ss_dssp TTEEEEEE-ECCSTTCEEC--
T ss_pred CCccEEEE-EcCCCCCCCcch
Confidence 64 667 888765555553
No 57
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.60 E-value=7.2e-08 Score=79.94 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=49.5
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCc----------ccccCCCCEEEEEEEEEeCC
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIKIDRE 249 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~----------~~~~~iGd~V~vkV~~id~e 249 (289)
...+|+++.| +++|+||+++ + .+||+|+|++++.+.-++ ++.+++||.|+++|+++|.+
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~--~----~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~ 153 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVG--P----MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQ 153 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEET--T----EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEec--C----eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcC
Confidence 3469999999 9999999995 2 899999999976533111 26799999999999999987
Q ss_pred CC
Q 022938 250 KS 251 (289)
Q Consensus 250 ~~ 251 (289)
.+
T Consensus 154 ~~ 155 (171)
T 1y14_B 154 VS 155 (171)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 58
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.60 E-value=3.6e-08 Score=89.99 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=78.0
Q ss_pred ccCCCCEEEEEEEEEecCCcEEEEEeec--------chhhhcccccc--cccEEEe-----eeeeEEEEEecCCCceeEE
Q 022938 149 KGLTGSIISVKVIQANEEMKKLVFSEKD--------AVWNKYSSRVN--VEDIFVG-----RDYGAFIHLRFPDGLYHLT 213 (289)
Q Consensus 149 ~~~vG~~V~vkVl~vd~~~~ri~lS~k~--------~~~~~~~~~~~--~G~iv~G-----~~~G~fV~i~~~~G~~~i~ 213 (289)
++.+|+.+++.|...|.. +....+.|+ +..+..+++++ .|++++| .++|+||+++ + +.
T Consensus 86 ~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG---k---~E 158 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG---K---LE 158 (344)
T ss_dssp TCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET---T---EE
T ss_pred cccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC---C---eE
Confidence 456999999999877642 222223232 23344566666 8999999 8889999994 3 99
Q ss_pred EEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecCCCCchhHHh
Q 022938 214 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 269 (289)
Q Consensus 214 Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~~~p~~~~~ 269 (289)
|++|.++++ +.+.|++||.|+|.|++++++++...+++-...++....+.
T Consensus 159 giLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~Lf 208 (344)
T 1hh2_P 159 TRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLM 208 (344)
T ss_dssp EEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHH
T ss_pred EEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHH
Confidence 999999986 45789999999999999998766555555555555544443
No 59
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.53 E-value=6.3e-08 Score=85.06 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=61.9
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc---cCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI---QDIRDILNEGDEVRVKVIKIDREKSRITLS 256 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~---~~~~~~~~iGd~V~vkV~~id~e~~ri~lS 256 (289)
..++||+|.| .++|+||+|+ .+ ..|++|++++++.+. .++++.|++||.|.|+|++++. .+++.||
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~--~~---~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS 144 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIK--AP---YKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLS 144 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS--SS---SCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcC--CC---eEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEE
Confidence 5699999999 8999999996 33 899999999998776 7888999999999999999997 4799999
Q ss_pred EecC
Q 022938 257 IKQL 260 (289)
Q Consensus 257 lK~~ 260 (289)
+|+.
T Consensus 145 ~r~~ 148 (251)
T 2je6_I 145 VKGK 148 (251)
T ss_dssp CCST
T ss_pred Eccc
Confidence 9874
No 60
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.51 E-value=5.6e-08 Score=84.52 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=69.8
Q ss_pred cCCCEEEEEEEE----EEcCcEEEEECC----EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCC--
Q 022938 98 ESGFIYEGKIQG----FNGGGLLVRFFS----LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM-- 167 (289)
Q Consensus 98 ~~G~iv~g~V~~----v~~~G~~V~l~g----v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~-- 167 (289)
+.|++++|+|.+ +.+..++|++|. .+|+||.+|+. |.+.|+ +||+++|.|++++.+.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi-------p~E~~~------~GDrIkayV~~V~~~~~g 72 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-------PGESYE------HGNRLRCYVVGVTRGARE 72 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC-------TTCCCC------TTCEEEEEEEEEECCSSS
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC-------CCccCC------CCCEEEEEEEEEEcCCCC
Confidence 689999999999 899999999995 99999999975 445554 9999999999999764
Q ss_pred cEEEEEeecchhhhcccccccccEEEe
Q 022938 168 KKLVFSEKDAVWNKYSSRVNVEDIFVG 194 (289)
Q Consensus 168 ~ri~lS~k~~~~~~~~~~~~~G~iv~G 194 (289)
.++.||+....+.+.+.++++-++.+|
T Consensus 73 pqIiLSRt~p~lvk~Lfe~EVPEI~dG 99 (251)
T 2asb_A 73 PLITLSRTHPNLVRKLFSLEVPEIADG 99 (251)
T ss_dssp CEEEEESSCHHHHHHHHHHHCHHHHTT
T ss_pred CEEEEEeccHHHHHHHHHhcchHhhcC
Confidence 599999998777666666666665555
No 61
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.48 E-value=5.4e-08 Score=80.80 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred ccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCccccc----------CcccccCCCCEEEEEEEEEe
Q 022938 183 SSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ----------DIRDILNEGDEVRVKVIKID 247 (289)
Q Consensus 183 ~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~----------~~~~~~~iGd~V~vkV~~id 247 (289)
.....+|++++| +++|+||+++ + ++||+|+++|++.+.- +....+++||.|+++|+++|
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~--~----~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG--P----LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT--T----BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC--C----eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEE
Confidence 335578999999 9999999995 3 6799999999765433 33568999999999999999
Q ss_pred CCCCeE
Q 022938 248 REKSRI 253 (289)
Q Consensus 248 ~e~~ri 253 (289)
.+.+++
T Consensus 153 ~~~~~~ 158 (172)
T 3h0g_G 153 TDATEI 158 (172)
T ss_dssp ESSSCE
T ss_pred CCCCCc
Confidence 877443
No 62
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.46 E-value=2.8e-07 Score=79.95 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=61.4
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcc-cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 258 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~-~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK 258 (289)
..++||+|.| .++|+||+|+ . ...|++|+++++.. ...++++.|++||.|.|+|++++. .+++.||+|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~--~---~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r 127 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIY--S---PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMK 127 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS--S---SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC--C---CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEc
Confidence 4699999999 8899999996 2 28899999999964 567889999999999999999997 579999998
Q ss_pred cC
Q 022938 259 QL 260 (289)
Q Consensus 259 ~~ 260 (289)
+.
T Consensus 128 ~~ 129 (229)
T 2ba0_A 128 DR 129 (229)
T ss_dssp SS
T ss_pred cc
Confidence 75
No 63
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.45 E-value=5.1e-07 Score=78.24 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=62.5
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEee
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k 175 (289)
.+.|+++.|+|+++.++|++|+++ ..+|++|.++++......+..+.++ +||.|.|+|++++. .+++.||.+
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~------~GD~V~arVi~v~~-~~~i~LS~r 127 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLD------IGDAIIAKVLNIDP-KMKVTLTMK 127 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCC------TTCEEEEEEEEECT-TCCEEEECC
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccC------CCCEEEEEEEEECC-CCcEEEEEc
Confidence 479999999999999999999999 7999999999985322245555665 99999999999986 468999987
Q ss_pred cc
Q 022938 176 DA 177 (289)
Q Consensus 176 ~~ 177 (289)
..
T Consensus 128 ~~ 129 (229)
T 2ba0_A 128 DR 129 (229)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 64
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.42 E-value=3.3e-07 Score=80.49 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=62.0
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccC--cCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSC--KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~--~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
.+.|+++.|+|+++.++|+||+++ +.+|+||.++++..+.. .++.+.|+ +||.|.|+|++++.+ +++.||
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~------vGD~V~arVi~v~~~-~~i~LS 144 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLD------VGDYVIARIENFDRS-IDPVLS 144 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCC------TTCEEEEEEEEEETT-EEEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCC------CCCEEEEEEEEECCC-CcEEEE
Confidence 489999999999999999999999 79999999999865420 23344454 999999999999954 699999
Q ss_pred eecc
Q 022938 174 EKDA 177 (289)
Q Consensus 174 ~k~~ 177 (289)
.+..
T Consensus 145 ~r~~ 148 (251)
T 2je6_I 145 VKGK 148 (251)
T ss_dssp CCST
T ss_pred Eccc
Confidence 9874
No 65
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.40 E-value=1.8e-07 Score=81.46 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=60.4
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcc----cccCcccccCCCCEEEEEEEEEeCCCCeEEE
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LIQDIRDILNEGDEVRVKVIKIDREKSRITL 255 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~----~~~~~~~~~~iGd~V~vkV~~id~e~~ri~l 255 (289)
..++||+|.| .++|+||+|+ .+ ..|++|+++++.. +..++.+.|++||.|.|+|++++. .+++.|
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~--~~---~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~L 136 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDIN--SP---YVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLL 136 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECS--SS---SCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEE
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeC--CC---eEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEE
Confidence 5699999999 8899999996 33 8999999999863 356788899999999999999997 468999
Q ss_pred EEecC
Q 022938 256 SIKQL 260 (289)
Q Consensus 256 SlK~~ 260 (289)
|+|+.
T Consensus 137 S~k~~ 141 (235)
T 2z0s_A 137 TVQGE 141 (235)
T ss_dssp ECCSS
T ss_pred EEecc
Confidence 99874
No 66
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.39 E-value=3.2e-07 Score=79.91 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=61.5
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCcc---CcCcccchhcccccCCCCEEEEEEEEEecCCcEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHS---CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~---~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~l 172 (289)
.+.|+++.|+|+++.++|+||+++ +.+|++|.++++..+. ..++.+.|+ +||.|.++|++++.+ +++.|
T Consensus 64 p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~------~GD~V~a~Vi~v~~~-~~i~L 136 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLK------VGDYIKAKVVAFDKT-RSPLL 136 (235)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSC------TTCEEEEEEEEECTT-SCEEE
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCC------CCCEEEEEEEEECCC-CcEEE
Confidence 489999999999999999999999 7999999999976321 134455555 999999999999854 58999
Q ss_pred Eeecc
Q 022938 173 SEKDA 177 (289)
Q Consensus 173 S~k~~ 177 (289)
|.+..
T Consensus 137 S~k~~ 141 (235)
T 2z0s_A 137 TVQGE 141 (235)
T ss_dssp ECCSS
T ss_pred EEecc
Confidence 98753
No 67
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.37 E-value=8.5e-07 Score=67.05 Aligned_cols=83 Identities=29% Similarity=0.425 Sum_probs=56.8
Q ss_pred cCCCEEEEEEEEEE---cCcEEEEEC--CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEE
Q 022938 98 ESGFIYEGKIQGFN---GGGLLVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172 (289)
Q Consensus 98 ~~G~iv~g~V~~v~---~~G~~V~l~--gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~l 172 (289)
+.++..+|+|+..+ .+| |+.-+ |.+.|+|++++.+... +.+. ..+|+.|++.|..+
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---~~~~------l~~Ge~V~g~V~~i--------- 72 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---VRGN------PQQGDRVEGKIKSI--------- 72 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC---CCCC------CCTTCEEEEEEEEC---------
T ss_pred cccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc---cccC------CCCCCEEEEEEEEe---------
Confidence 46778899999986 467 66654 6999999999976421 0011 12566666655433
Q ss_pred EeecchhhhcccccccccEEEeeeeeEEEEEecCCCceeEEEEEEccCcCcccc
Q 022938 173 SEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI 226 (289)
Q Consensus 173 S~k~~~~~~~~~~~~~G~iv~G~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~ 226 (289)
.++|+||+|. +| ++||+|+|+++|.++
T Consensus 73 ----------------------~~fG~fv~l~--~~---~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 73 ----------------------TDFGIFIGLD--GG---IDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------------------CSEEEEECTT--SC---EEEEEEEEEEEECCC
T ss_pred ----------------------CCcEEEEEcC--CC---ceEEEEHHHCccCcC
Confidence 6799999995 44 999999999998764
No 68
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.25 E-value=3.7e-06 Score=83.32 Aligned_cols=81 Identities=15% Similarity=0.300 Sum_probs=60.3
Q ss_pred HhhcCCC--EEEEEEEEEEcCcEEEEEC--CEEEEeecCCCCC--CccCcCcc-cch--hcccccCCCCEEEEEEEEEec
Q 022938 95 AYKESGF--IYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMSP--SHSCKEPQ-KSI--HEIAKGLTGSIISVKVIQANE 165 (289)
Q Consensus 95 ~~~~~G~--iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels~--~~~~~~p~-~~~--~~~~~~~vG~~V~vkVl~vd~ 165 (289)
-..+.|+ +++|+|++++++|+||++. |++|+||.+++++ .+..-+.. ..+ +....+.+||.|+|+|.++|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEET
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeC
Confidence 3457899 9999999999999999993 8999999999973 22101100 000 001124499999999999999
Q ss_pred CCcEEEEEee
Q 022938 166 EMKKLVFSEK 175 (289)
Q Consensus 166 ~~~ri~lS~k 175 (289)
++++|.+++.
T Consensus 634 ~~~~I~~~l~ 643 (644)
T 2id0_A 634 ETRSIIARPV 643 (644)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999863
No 69
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.04 E-value=1.4e-05 Score=67.99 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=52.5
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccc--h----------hcccccCCCCEEEEEEEEEec
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKS--I----------HEIAKGLTGSIISVKVIQANE 165 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~--~----------~~~~~~~vG~~V~vkVl~vd~ 165 (289)
..|+++.|+|++++++|+||+++.++|+++.+++.+.+..-++... + .....+.+|+.|+|||.+++.
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~ 159 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDF 159 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEEc
Confidence 6899999999999999999999888999999999765431111110 0 011235599999999999986
Q ss_pred CC
Q 022938 166 EM 167 (289)
Q Consensus 166 ~~ 167 (289)
..
T Consensus 160 ~~ 161 (203)
T 3ayh_B 160 VD 161 (203)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 70
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.96 E-value=1.2e-05 Score=79.65 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=56.0
Q ss_pred cccccc--EEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCc--cc--cc--------CcccccCCCCEEEEEEEE
Q 022938 185 RVNVED--IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSW--DL--IQ--------DIRDILNEGDEVRVKVIK 245 (289)
Q Consensus 185 ~~~~G~--iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~--~~--~~--------~~~~~~~iGd~V~vkV~~ 245 (289)
.-++|+ ++.| +++|+||+|. ..| ++|+||++++++ ++ .. +....|++||.|+|+|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~-~~g---ieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~ 630 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLV-DNG---AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEET-TTC---CEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEc-CCc---EEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEE
Confidence 447788 8888 8999999994 134 999999999973 22 11 345679999999999999
Q ss_pred EeCCCCeEEEEE
Q 022938 246 IDREKSRITLSI 257 (289)
Q Consensus 246 id~e~~ri~lSl 257 (289)
+|+++++|.+++
T Consensus 631 vd~~~~~I~~~l 642 (644)
T 2id0_A 631 VRMETRSIIARP 642 (644)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCEEEEEE
Confidence 999999999986
No 71
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.89 E-value=2e-05 Score=75.56 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=56.8
Q ss_pred cCCCEEEEEEEEEEcC--cEEEEEC-CEEEEeecCCCCCCccC--------cCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 98 ESGFIYEGKIQGFNGG--GLLVRFF-SLVGFLPFPQMSPSHSC--------KEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~--G~~V~l~-gv~g~ip~sels~~~~~--------~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
..|.++.|+|+++.++ |+||+++ |..||+|.+++++.+.. .+..+.++ +||.|.|+|.+....
T Consensus 44 ~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk------~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 44 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLR------EGQEVIVQIDKEERG 117 (517)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCC------TTCEEEEEEEECCCT
T ss_pred CCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhcc------CCCEEEEEEEeeccc
Confidence 6899999999999999 9999999 99999999999866531 11223343 999999999987766
Q ss_pred CcEEEEEee
Q 022938 167 MKKLVFSEK 175 (289)
Q Consensus 167 ~~ri~lS~k 175 (289)
++...||..
T Consensus 118 ~KGa~lTt~ 126 (517)
T 2bx2_L 118 NKGAALTTF 126 (517)
T ss_dssp TCCCEEESS
T ss_pred cCCceEEee
Confidence 555555543
No 72
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.88 E-value=3e-05 Score=66.53 Aligned_cols=71 Identities=15% Similarity=0.022 Sum_probs=53.1
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccc--hh-----cccccCCCCEEEEEEEEEecCCc
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKS--IH-----EIAKGLTGSIISVKVIQANEEMK 168 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~--~~-----~~~~~~vG~~V~vkVl~vd~~~~ 168 (289)
..|+++.|+|++++++|+||++. .++|+++.+++.+.+..-++... +- ....+.+|+.|+|||.++|...+
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 68999999999999999999994 68999999999665431122110 00 11235699999999999997654
No 73
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.81 E-value=3.3e-05 Score=70.70 Aligned_cols=85 Identities=9% Similarity=0.159 Sum_probs=61.0
Q ss_pred hhhcccccc--cccEEEe--e-------eeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEe
Q 022938 179 WNKYSSRVN--VEDIFVG--R-------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 247 (289)
Q Consensus 179 ~~~~~~~~~--~G~iv~G--~-------~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id 247 (289)
.+..+++++ +|++++| . +.++||+++ .|..++.|++|.+++. |.+.|++||.|+|.|.+++
T Consensus 119 r~~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG--~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~ 190 (366)
T 1k0r_A 119 NERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIG--TETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVT 190 (366)
T ss_dssp --------CCCTTCEEEEEEECCHHHHHTTCEEEEEC--CSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeC--CCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEe
Confidence 445566776 9999999 2 258999996 2101299999999986 4588999999999999999
Q ss_pred CCCCeEEEEEecCCCCchhHHhhh
Q 022938 248 REKSRITLSIKQLEEDPLLETLEK 271 (289)
Q Consensus 248 ~e~~ri~lSlK~~~~~p~~~~~~~ 271 (289)
.+.+...+.+....|++...+.+.
T Consensus 191 ~~~kgpqI~LSRT~p~lv~~Lfe~ 214 (366)
T 1k0r_A 191 RGAREPLITLSRTHPNLVRKLFSL 214 (366)
T ss_dssp CCSSSCEEEEESSCHHHHHHHHHH
T ss_pred cCCCccEEEEEeCChHHHHHHHHh
Confidence 987777777777777777666654
No 74
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.79 E-value=2.9e-05 Score=65.96 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=47.9
Q ss_pred cccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc-------------------cCcccccCCCCEEEE
Q 022938 186 VNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------------------QDIRDILNEGDEVRV 241 (289)
Q Consensus 186 ~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~-------------------~~~~~~~~iGd~V~v 241 (289)
-.+|+++.| +++|+||+++ . ++|++|.+++.+++. ++....|++||.|++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg--~----~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~Vrv 152 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS--F----FDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRF 152 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS--S----CCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe--C----ceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEE
Confidence 377888888 9999999995 2 789999999976643 445567999999999
Q ss_pred EEEEEeCC
Q 022938 242 KVIKIDRE 249 (289)
Q Consensus 242 kV~~id~e 249 (289)
||.+++..
T Consensus 153 rV~~v~~~ 160 (203)
T 3ayh_B 153 QIESEDFV 160 (203)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 99999863
No 75
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.75 E-value=4e-05 Score=77.22 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCEEEEEEEEEEcCcEEEEEC--CEEEEeecCCCC--CCccC----------cC----cccchhcccccCCCCEEEEEEE
Q 022938 100 GFIYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMS--PSHSC----------KE----PQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 100 G~iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels--~~~~~----------~~----p~~~~~~~~~~~vG~~V~vkVl 161 (289)
.++++|+|+++.++|+||.+. |++|+||.++++ ..++. .+ +... +.+||.|+|+|.
T Consensus 670 ~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~------~~lGD~V~VkV~ 743 (760)
T 2vnu_D 670 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD------VYVFDKVEVQVR 743 (760)
T ss_dssp CSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEE------EETTCEEEEEEC
T ss_pred ceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcE------EecCCEEEEEEE
Confidence 389999999999999999997 899999999995 32210 11 1233 449999999999
Q ss_pred EEecC---CcEEEEEee
Q 022938 162 QANEE---MKKLVFSEK 175 (289)
Q Consensus 162 ~vd~~---~~ri~lS~k 175 (289)
.+|.+ +++|.+|+|
T Consensus 744 ~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 744 SVMDPITSKRKAELLLK 760 (760)
T ss_dssp --------CCEEEC---
T ss_pred EEECccccCCcEEEEeC
Confidence 99987 589999875
No 76
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.68 E-value=5.9e-05 Score=77.76 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCEEEEEEEEEEcCcEEEEEC--CEEEEeecCCCC--CCccC----------cC----cccchhcccccCCCCEEEEEEE
Q 022938 100 GFIYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMS--PSHSC----------KE----PQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 100 G~iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels--~~~~~----------~~----p~~~~~~~~~~~vG~~V~vkVl 161 (289)
|++++|+|+++.++|+||.+. |++|+||.++++ +.+.. .+ +... +.+||+|+|+|.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~------~~lGD~V~VkV~ 960 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD------VYVFDKVEVQVR 960 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEE------EETTCEEEEEEC
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcE------EccCCEEEEEEE
Confidence 999999999999999999997 899999999996 33210 11 1233 449999999999
Q ss_pred EEecC---CcEEEEEee
Q 022938 162 QANEE---MKKLVFSEK 175 (289)
Q Consensus 162 ~vd~~---~~ri~lS~k 175 (289)
.+|.+ ++||.||+|
T Consensus 961 ~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 961 SVMDPITSKRKAELLLK 977 (977)
T ss_dssp CCCCSSSCCCCCCEEEC
T ss_pred EEcCcccCCCceEEEeC
Confidence 99863 378999886
No 77
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.52 E-value=8.7e-05 Score=71.16 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=59.7
Q ss_pred cccccccccEEEe-----eee--eEEEEEecCCCceeEEEEEEccCcCcccc---------cCcccccCCCCEEEEEEEE
Q 022938 182 YSSRVNVEDIFVG-----RDY--GAFIHLRFPDGLYHLTGLVHVSEVSWDLI---------QDIRDILNEGDEVRVKVIK 245 (289)
Q Consensus 182 ~~~~~~~G~iv~G-----~~~--G~fV~i~~~~G~~~i~Glv~~sels~~~~---------~~~~~~~~iGd~V~vkV~~ 245 (289)
......+|.+|.| .++ |+||+++ +| ..||+|++++++.+. .++.+.+++||.|.|.|.+
T Consensus 39 ~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG--~g---k~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~K 113 (517)
T 2bx2_L 39 PGHEQKKANIYKGKITRIEPSLEAAFVDYG--AE---RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 113 (517)
T ss_dssp SSSCCCTTCEEEEEEEEEETTTTEEEEESS--SS---SCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEE
T ss_pred CCCcCCCCCEEEEEEEEeccCCceEEEEeC--CC---cEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEe
Confidence 3345689999999 677 9999997 55 889999999987763 3466789999999999999
Q ss_pred EeCCCCeEEEEEecC
Q 022938 246 IDREKSRITLSIKQL 260 (289)
Q Consensus 246 id~e~~ri~lSlK~~ 260 (289)
....++.-.||..-+
T Consensus 114 e~~g~KGa~lTt~is 128 (517)
T 2bx2_L 114 EERGNKGAALTTFIS 128 (517)
T ss_dssp CCCTTCCCEEESSCC
T ss_pred eccccCCceEEeeEE
Confidence 987777777776544
No 78
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00011 Score=63.06 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=48.2
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc--------------cCcccccCCCCEEEEEEEE
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--------------QDIRDILNEGDEVRVKVIK 245 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~--------------~~~~~~~~iGd~V~vkV~~ 245 (289)
.-.+|+++.| +++|+||++. | .++|++|.+++..++. ++....|++||.|++||.+
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~---g--~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~ 152 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLL---G--IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIER 152 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECT---T--SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEccCcEEEEcc---C--ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEE
Confidence 3467888888 9999999993 2 2789999999976542 3345669999999999999
Q ss_pred EeCCCC
Q 022938 246 IDREKS 251 (289)
Q Consensus 246 id~e~~ 251 (289)
+|.+.+
T Consensus 153 v~~~~~ 158 (218)
T 2ckz_B 153 EVFVDV 158 (218)
T ss_dssp EEECCC
T ss_pred EEcccC
Confidence 997553
No 79
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.43 E-value=6.6e-05 Score=67.58 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=54.8
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcc----cc------cCcccccCCCCEEEEEEEEEeCC
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LI------QDIRDILNEGDEVRVKVIKIDRE 249 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~----~~------~~~~~~~~iGd~V~vkV~~id~e 249 (289)
..++|++|.| .++|+||+|+.+ ..|++|++++++. +. .+.++.|++||.|.|+|++++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~-----~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~- 165 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSR-----LDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS- 165 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSS-----SCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCC-----cCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-
Confidence 5689999888 899999999622 5789999998652 22 2355789999999999999995
Q ss_pred CCeEEEEEec
Q 022938 250 KSRITLSIKQ 259 (289)
Q Consensus 250 ~~ri~lSlK~ 259 (289)
...+.||+|+
T Consensus 166 ~~~i~LStr~ 175 (308)
T 2nn6_H 166 DGAVSLHTRS 175 (308)
T ss_dssp TTEEEEECCS
T ss_pred CCCEEEEecC
Confidence 6789999985
No 80
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.43 E-value=4.3e-05 Score=57.55 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=53.1
Q ss_pred ccCCCeEEEEEEEEeCCCCeEeeeeecccccCCcchhhhhhhhhhhhHHHHH-HHhhcCCCEEEEEEEEEEcCcEEEEEC
Q 022938 42 ERICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNRQSQSRSSADWKAA-RAYKESGFIYEGKIQGFNGGGLLVRFF 120 (289)
Q Consensus 42 ~~vG~~v~~~Vl~~d~~~~~i~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~G~iv~g~V~~v~~~G~~V~l~ 120 (289)
-..++....+|..++..++-=-++.. +...+++-.+.... |+.+ ...++.|++++++|+.+.++|+||++.
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfGFI~~~----~gg~dvfvH~s~l~----~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~ 82 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFGFITPD----DGSKDVFVHFSAGS----SGAAVRGNPQQGDRVEGKIKSITDFGIFIGLD 82 (101)
T ss_dssp -----CEEEEEEEEEGGGTEEEEEES----SSSCEEEEECCCSC----SSSCCCCCCCTTCEEEEEEEECCSEEEEECTT
T ss_pred ccccccceeEEEEEECCCCCEEEEeC----CCCcEEEEEEEEEe----cCCccccCCCCCCEEEEEEEEeCCcEEEEEcC
Confidence 44677788889888877663222211 00111111111110 0000 123689999999999999999999997
Q ss_pred -CEEEEeecCCCCCCcc
Q 022938 121 -SLVGFLPFPQMSPSHS 136 (289)
Q Consensus 121 -gv~g~ip~sels~~~~ 136 (289)
+++|++|+++++|.+.
T Consensus 83 ~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 83 GGIDGLVHLSDISWAQA 99 (101)
T ss_dssp SCEEEEEEEEEEEECCC
T ss_pred CCceEEEEHHHCccCcC
Confidence 9999999999998653
No 81
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.43 E-value=8.1e-05 Score=75.01 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=44.9
Q ss_pred cEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcC--cccc-----------cC----cccccCCCCEEEEEEEEEe
Q 022938 190 DIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKID 247 (289)
Q Consensus 190 ~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels--~~~~-----------~~----~~~~~~iGd~V~vkV~~id 247 (289)
+++.| +++|+||.|. ..| ++|+||+++++ .++. .+ ....|++||.|+|+|..+|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~-~~g---iEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVP-KFG---VEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp SEEEEEEEEEETTEEEEEET-TTT---EEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred eEEEEEEEEEECCeEEEEEe-CCC---cEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 46666 9999999995 125 99999999996 3321 12 2578999999999999999
Q ss_pred CC---CCeEEEEEe
Q 022938 248 RE---KSRITLSIK 258 (289)
Q Consensus 248 ~e---~~ri~lSlK 258 (289)
.+ ++||.||+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 87 699999987
No 82
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00012 Score=75.46 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=52.8
Q ss_pred ccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcC--cccc-----------cC----cccccCCCCEEEEEEEEE
Q 022938 189 EDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKI 246 (289)
Q Consensus 189 G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels--~~~~-----------~~----~~~~~~iGd~V~vkV~~i 246 (289)
|+++.| +++|+||.|. ..| ++|+||+++++ .++. .+ ....|++||.|+|+|..+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~-~~g---iEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~v 962 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVP-KFG---VEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 962 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECT-TTC---CEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCC
T ss_pred ceEEEEEEEEEcCCeEEEEEc-CCC---eEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEE
Confidence 778887 8999999994 125 99999999997 3321 12 347899999999999999
Q ss_pred eCC---CCeEEEEEe
Q 022938 247 DRE---KSRITLSIK 258 (289)
Q Consensus 247 d~e---~~ri~lSlK 258 (289)
|.+ ++||.||+|
T Consensus 963 d~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 963 MDPITSKRKAELLLK 977 (977)
T ss_dssp CCSSSCCCCCCEEEC
T ss_pred cCcccCCCceEEEeC
Confidence 874 389999987
No 83
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.34 E-value=0.00028 Score=58.37 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=53.6
Q ss_pred cccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 022938 186 VNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 256 (289)
Q Consensus 186 ~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lS 256 (289)
.++||+|.| ...+++|+|+.. . ..|++|.+++. ...+..+..|++||.|.|+|.+++. ...+.||
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~-~---~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Lt 74 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNF-S---SSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIE 74 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTT-S---CCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCC-C---ccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEE
Confidence 368899988 789999999730 2 78999999886 3346677889999999999999997 5678999
No 84
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.33 E-value=0.00086 Score=55.39 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=54.9
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECC--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
+.|+++.|.|+.+...+++|+++. ..|++|.+++.... ++....++ +||.|.++|.+++.. ..+.||.
T Consensus 6 ~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~--k~~r~~l~------~GDlV~ArV~~~~~~-~~~~Ltc 75 (175)
T 2ja9_A 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS--KKNRPTLQ------VGDLVYARVCTAEKE-LEAEIEC 75 (175)
T ss_dssp CTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCC--SSSCCCCC------TTCEEEEEEEECCTT-SCCEEES
T ss_pred CCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchh--hhhhccCC------CCCEEEEEEEEecCC-CceEEEe
Confidence 689999999999999999999997 89999999886322 33334444 999999999999753 4677774
No 85
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.31 E-value=0.00027 Score=63.53 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=57.0
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCC-cc--CcCcccchhcccccCCCCEEEEEEEEEecCCcEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPS-HS--CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~-~~--~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~l 172 (289)
.+.|++|.|+|+++..++++|+++ ...+++|.+++++. .. ..+..+...-...+.+||.|.++|++++. .+.+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEEE
Confidence 479999999999999999999999 68899999998753 11 01110000000124599999999999984 568999
Q ss_pred Eeecc
Q 022938 173 SEKDA 177 (289)
Q Consensus 173 S~k~~ 177 (289)
|.+..
T Consensus 172 Str~~ 176 (308)
T 2nn6_H 172 HTRSL 176 (308)
T ss_dssp ECCSS
T ss_pred EecCc
Confidence 98864
No 86
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.95 E-value=0.003 Score=54.79 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=50.5
Q ss_pred ccccEEEe--ee-------eeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCC--CeEEE
Q 022938 187 NVEDIFVG--RD-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK--SRITL 255 (289)
Q Consensus 187 ~~G~iv~G--~~-------~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~--~ri~l 255 (289)
++|++++| .. ..+||+++ .+..+.+|++|.+++. |.+.|++||.|+|.|.+++.+. ..|.|
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG--~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiL 77 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIG--TETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITL 77 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEEC--SSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeC--CCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEE
Confidence 57888888 22 36899996 2001289999999986 4688999999999999999764 67889
Q ss_pred EEec
Q 022938 256 SIKQ 259 (289)
Q Consensus 256 SlK~ 259 (289)
|...
T Consensus 78 SRt~ 81 (251)
T 2asb_A 78 SRTH 81 (251)
T ss_dssp ESSC
T ss_pred Eecc
Confidence 8765
No 87
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.41 E-value=0.014 Score=51.96 Aligned_cols=66 Identities=8% Similarity=-0.028 Sum_probs=53.3
Q ss_pred ccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 022938 185 RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257 (289)
Q Consensus 185 ~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSl 257 (289)
-.++||+|.| ....+.|+|.. ...|++|.+++. +..+..+..|++||.|.|+|++++. .....||+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s-----~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG-----SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS-----SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC-----CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEe
Confidence 3489999999 67788999963 267999998876 3346677889999999999999986 55788888
No 88
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.17 E-value=0.045 Score=48.61 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=54.0
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEe
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSE 174 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~ 174 (289)
++|++|-|+|+++....+.|+++ -..|+||.+++.-.. ++..+.| .+||.|.++|.+++. .....||.
T Consensus 126 ~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gat--k~~r~~f------~~GDlV~ArV~s~~~-~~~~eLsc 194 (289)
T 2nn6_G 126 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT--KRNRPNV------QVGDLIYGQFVVANK-DMEPEMVC 194 (289)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS--SCSSSSS------CTTCEEEEEEEECCT-TSCCEEEC
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcch--hhhhhhc------CCCCEEEEEEEEcCC-CCceEEEe
Confidence 79999999999999999999999 688999999876221 3333344 499999999999874 34566776
No 89
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.13 Score=43.54 Aligned_cols=70 Identities=7% Similarity=-0.032 Sum_probs=49.1
Q ss_pred cCCCEEEEEEEEEEcCcEEEEE-CCEEEEeecCCCCCCccCcCccc------chhcccccCCCCEEEEEEEEEecCCc
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRF-FSLVGFLPFPQMSPSHSCKEPQK------SIHEIAKGLTGSIISVKVIQANEEMK 168 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l-~gv~g~ip~sels~~~~~~~p~~------~~~~~~~~~vG~~V~vkVl~vd~~~~ 168 (289)
..|+++.|+|..+.+.|+.+-+ |=...+||...+...+. -+|.+ .+.......+|+.|+|+|.+++..++
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~-f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWT-FVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCB-CCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCccc-ccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 7899999999999998887754 45778999999865443 22211 11111112379999999999986554
No 90
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=93.60 E-value=0.12 Score=49.10 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=45.6
Q ss_pred ccccEEEeeeeeEEEEEecCCCceeEEEEEEccCcCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 022938 187 NVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 257 (289)
Q Consensus 187 ~~G~iv~G~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~~~~~~~~~iGd~V~vkV~~id~e~~ri~lSl 257 (289)
++|+.+ .|++|++. + ..|++|++++..+ -.....|++||.|+|+|.++|+.+++|.+..
T Consensus 402 ~~g~~f----~g~vv~l~--~----~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVW----DAVVVDRR--G----AQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCE----EEEEEEEE--T----TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEE----EEEEEEEe--C----cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 456554 45678874 2 5799999999765 2234579999999999999999999998764
No 91
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=90.70 E-value=0.65 Score=43.93 Aligned_cols=61 Identities=7% Similarity=0.087 Sum_probs=42.4
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEee
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK 175 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k 175 (289)
-..|+.++|.|+.+. +..|+++.+++..... ....+.+||+|+|+|.++|...+++.+...
T Consensus 401 ~~~g~~f~g~vv~l~---------~~~glV~v~~l~~d~~---------~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 401 AQPERVWDAVVVDRR---------GAQATLLIPDLAFDVQ---------VNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp TCTTCCEEEEEEEEE---------TTEEEEEEGGGTEEEE---------EECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred hCCCCEEEEEEEEEe---------CcEEEEEECCCCeEEe---------cCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 368999999887654 3356666666543211 112345999999999999999998877543
No 92
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=90.62 E-value=2.1 Score=28.99 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=29.7
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC-CEEEEeecCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF-SLVGFLPFPQMS 132 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~-gv~g~ip~sels 132 (289)
..|..+.|+|++|++ .-|+|+++ |..-.+...++.
T Consensus 25 tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~ 62 (66)
T 2eqj_A 25 SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQ 62 (66)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeeccc
Confidence 478999999999996 46899999 899888877764
No 93
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=87.99 E-value=1.4 Score=32.59 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=45.2
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCCCCcc-C---cC-cccchhcccccCCCCEEEEE
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMSPSHS-C---KE-PQKSIHEIAKGLTGSIISVK 159 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels~~~~-~---~~-p~~~~~~~~~~~vG~~V~vk 159 (289)
...|..+.|.|+++.+.++-|.+. |-.+.||.+.|.|... . +. +.+.++ +|+.|.|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~------~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIR------PGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCC------TTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCC------CCCEEEEE
Confidence 356889999999999999999996 7888899999998742 0 12 333444 99999997
No 94
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=85.21 E-value=1.6 Score=31.49 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=45.4
Q ss_pred hhhcccccccccEEEe----eeeeEEEEEecCCCceeEEEEEEcc-CcCcccccCcccccCCCCEEEEEEEEEeC
Q 022938 179 WNKYSSRVNVEDIFVG----RDYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDR 248 (289)
Q Consensus 179 ~~~~~~~~~~G~iv~G----~~~G~fV~i~~~~G~~~i~Glv~~s-els~~~~~~~~~~~~iGd~V~vkV~~id~ 248 (289)
+.....++-+|++.+| .++-++|.+-..+ +.+|++--. ++.-++.+++++.+ +|.+|+++|+.+|.
T Consensus 23 ~~~~~~~~~~g~VtkGiVy~kd~~fyV~L~dY~---glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 23 YRTSAMDLSPGSVHEGIVYFKDGIFKVRLLGYE---GHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CSSCCCCCCSSCEEEEEEEEETTEEEEECTTTS---SCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred eeeeccccCCCceEeeEEEEeCCEEEEEecCCC---CceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 3345667899999999 6666678773222 488887532 23333455565555 79999999999985
No 95
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=81.30 E-value=2.4 Score=32.69 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred cCCCEEEEEEEEEEcCcEEEEECC---EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFFS---LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~g---v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
+.|..++|+|+.+.+.+++|.+.+ -.--+|++++..... +. ....+.+||+|+|.-.
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~---~~----~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPP---AD----YNKEITEGDEVEVYSR 72 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCC---C--------CCCTTCEEEEEEC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCC---cc----cccCCCCCCEEEEEec
Confidence 469999999999999999999973 246788888765432 11 1123459999998553
No 96
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=76.51 E-value=12 Score=24.54 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.7
Q ss_pred cCCCEEEEEEEEEEcC--cEEEEEC-CEEEEeecCCCC
Q 022938 98 ESGFIYEGKIQGFNGG--GLLVRFF-SLVGFLPFPQMS 132 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~--G~~V~l~-gv~g~ip~sels 132 (289)
..|.-+-|+|++|... -++|.++ +..-.+...++.
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 4688999999999976 5999999 888888887764
No 97
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=74.61 E-value=17 Score=25.38 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=41.3
Q ss_pred CCCEEEEEEEEEEcCcE-EEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGL-LVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~-~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
.--.++|+|++..++|. .|.+. |..-.++++---. . ......+||.|.+.+...|.++++|+..
T Consensus 12 ~~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~R----k-------~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 12 GAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMR----Q-------HYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp CCSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHH----H-------TTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCccee----c-------CCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 45568999999997665 58888 7444444331000 0 0112248999999988777777777754
No 98
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=73.93 E-value=15 Score=24.73 Aligned_cols=48 Identities=38% Similarity=0.526 Sum_probs=36.8
Q ss_pred hcCCCEEEEEEEEEEcCcE-EEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEec
Q 022938 97 KESGFIYEGKIQGFNGGGL-LVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANE 165 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~-~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~ 165 (289)
.+.|+.++.+|.++...|- +..++|..-|+|.. .+|++|.++|.....
T Consensus 13 ~~~~~~~~v~I~~l~~~G~Gva~~~g~~vfV~~a---------------------lPGE~V~v~i~k~kk 61 (70)
T 1yvc_A 13 VEAGKEYEVTIEDMGKGGDGIARIDGFVVFVPNA---------------------EKGSVINVKVTAVKE 61 (70)
T ss_dssp SCTTCEEEEECCEECTTSCEEEEETTEEEEETTC---------------------CTTCEEEEEEEEECS
T ss_pred ccCCCEEEEEEEEcCCCccEEEEECCEEEEccCC---------------------CCCCEEEEEEEEeeC
Confidence 3678999999999887664 55667877888732 289999999998743
No 99
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=73.19 E-value=18 Score=24.12 Aligned_cols=47 Identities=28% Similarity=0.366 Sum_probs=37.2
Q ss_pred hcCCCEEEEEEEEEEcCcE-EEEECCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEe
Q 022938 97 KESGFIYEGKIQGFNGGGL-LVRFFSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQAN 164 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~-~V~l~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd 164 (289)
++.|+.++.+|.++...|- +..++|..-|+|.. .+|++|.++|....
T Consensus 11 ~~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~a---------------------lPGE~V~v~i~k~k 58 (68)
T 1yez_A 11 VEEGEVYDVTIQDIARQGDGIARIEGFVIFVPGT---------------------KVGDEVRIKVERVL 58 (68)
T ss_dssp CCTTEEEEEECCEEETTTEEEEEETTEEEEEESC---------------------CTTCEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEcCCCccEEEEECCEEEECcCC---------------------CCCCEEEEEEEEec
Confidence 3578899999999997775 55667888888842 18999999999864
No 100
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=71.68 E-value=14 Score=25.14 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=34.9
Q ss_pred EEEEEEEEEEc---CcEEEEECC-EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 102 IYEGKIQGFNG---GGLLVRFFS-LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 102 iv~g~V~~v~~---~G~~V~l~g-v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
..+|+|+..+. +|++..-+| -+.|+|.+.+..... +.+ ..||.|.+.+..-
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~-----~~l------~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGF-----KTL------AEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSC-----CCC------CTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccC-----cCC------CCCCEEEEEEEEC
Confidence 35899999984 344444344 899999999864321 112 2899999998753
No 101
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=71.61 E-value=19 Score=23.90 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=34.5
Q ss_pred EEEEEEEEc-CcE-EEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 104 EGKIQGFNG-GGL-LVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 104 ~g~V~~v~~-~G~-~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
+|+|+..+. .|. |+.-. |-+-|+|.+.+..... . .+ ..||+|.+.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~-~----~l------~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGF-K----TL------EEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSC-C----CC------CTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHccccCC-C----CC------CCCCEEEEEEEEC
Confidence 799999984 343 55555 7899999999865321 1 12 2899999998643
No 102
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=70.03 E-value=11 Score=25.13 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=33.3
Q ss_pred EEEEEEEEc-CcE-EEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 104 EGKIQGFNG-GGL-LVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 104 ~g~V~~v~~-~G~-~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
+|+|+..+. .|. |+.-. |-+-|+|.+.+..... ..+ ..||+|.+.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~-----~~l------~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGF-----KTL------KEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSC-----CCC------CSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCC-----CCC------CCCCEEEEEEEE
Confidence 688999883 333 55554 8899999999865321 112 289999998863
No 103
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=69.61 E-value=20 Score=24.30 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.3
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC-CEEEEeecCCCC
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF-SLVGFLPFPQMS 132 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~-gv~g~ip~sels 132 (289)
+.|.-+-|+|+...+.-|+|.|+ .-+-.+...+|.
T Consensus 27 ~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~ 62 (69)
T 2xk0_A 27 NDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLR 62 (69)
T ss_dssp TTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEE
T ss_pred cCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHH
Confidence 35888888888888889999998 666667666653
No 104
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=69.38 E-value=14 Score=25.64 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=29.5
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC-CEEEEeecCCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF-SLVGFLPFPQMSP 133 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~-gv~g~ip~sels~ 133 (289)
..|.-+-|+|++|.. .-|+|.|+ +-.-.++..++..
T Consensus 38 sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~ 76 (79)
T 2m0o_A 38 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISP 76 (79)
T ss_dssp TTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCC
T ss_pred cCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeecccc
Confidence 468888999999995 35999999 8999999888753
No 105
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=69.16 E-value=19 Score=24.52 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=34.3
Q ss_pred EEEEEEEEc-CcE-EEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 104 EGKIQGFNG-GGL-LVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 104 ~g~V~~v~~-~G~-~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
+|+|+..+. .|. |+.-. |-+-|+|.+.+..... . .+ ..||.|.+.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~-~----~l------~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGF-R----TL------NEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSC-S----SC------CTTCEEEEEEECC
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCC-C----CC------CCCCEEEEEEEEC
Confidence 799999984 343 55554 8889999999864321 1 12 2899999998643
No 106
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=66.07 E-value=14 Score=24.70 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=33.8
Q ss_pred EEEEEEEEc---CcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 104 EGKIQGFNG---GGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 104 ~g~V~~v~~---~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
+|+|+..+. +|.+..-+ |-+-|+|.+.+..... ..+ ..||.|.+.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~-----~~l------~~G~~V~f~~~~~ 55 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF-----KTL------KEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG-----SSC------CTTCEEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC-----CCC------CCCCEEEEEEEEC
Confidence 799999884 34444444 6899999999863221 112 3899999998643
No 107
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=65.55 E-value=16 Score=25.98 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=37.7
Q ss_pred cCCCEEEEEEEEEEcCcEEEEEC--CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 98 ESGFIYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
..++..+|+|+...+.-=|+.-. |-+-|+|.+.+.... . .+ ..||.|.+.+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~~--~----~L------~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDV--D----SL------ELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSCT--T----TC------CTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCccEEecCCCCceEEEEEhhhcccc--C----cC------CCCCEEEEEEE
Confidence 35788899999998532355544 589999999986431 1 22 28999999885
No 108
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=64.77 E-value=21 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=33.0
Q ss_pred EEEEEEEEc-CcE-EEEEC-CEEEEeecCCCC-CCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 104 EGKIQGFNG-GGL-LVRFF-SLVGFLPFPQMS-PSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 104 ~g~V~~v~~-~G~-~V~l~-gv~g~ip~sels-~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
+|+|+..+. .|. |+.-. |-+-|++.+.+. .... . .+ ..||+|.+.+.
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~-~----~l------~~G~~V~F~~~ 52 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDE-G----KL------VKGSMVHFDPT 52 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGG-T----TC------CTTSEEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCC-C----CC------CCCCEEEEEEE
Confidence 689999884 333 55554 889999999986 3221 1 12 38999999986
No 109
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=63.44 E-value=29 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=36.7
Q ss_pred CCEEEEEEEEEEc---CcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 100 GFIYEGKIQGFNG---GGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 100 G~iv~g~V~~v~~---~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
.+..+|+|+..+. +|++..-+ +-+-|+|.+.+.... +..-++ ....||.|.+.+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~----~~~g~~---~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN----PRKYLR---SVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCC----CSCCSC---SCCSSCEEEEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccc----cccccc---cCCCCCEEEEEEEE
Confidence 3456899999984 35554444 699999999996531 110110 12389999999864
No 110
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=62.75 E-value=35 Score=24.51 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=39.9
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEEC---CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFF---SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE 166 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~---gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~ 166 (289)
+.+|++.+|.|. +.++-+.|.+- |.++++--. +.. ..+.-+.++ +-.+|.+|+++|..+|.-
T Consensus 30 ~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dY-vnv---~~dr~~klk---kkLVGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 30 LSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDY-LNY---RQDTLDRLK---ERLVGRVIKTRVVRADGL 94 (102)
T ss_dssp CCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTT-CCS---SCCCCCHHH---HHHTTCEEEEEEEEECSS
T ss_pred cCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehh-hhh---hHHHHHHHH---HHhcCceEEEEEEEeccE
Confidence 468999999664 55666778874 688887522 111 122222232 334999999999999853
No 111
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=60.67 E-value=31 Score=28.64 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=40.8
Q ss_pred ccccccccEEEe-----eeeeEEEEEecCCCceeEEEEEEccCcCcccc--cCc----------ccccCCCCEEEEEEEE
Q 022938 183 SSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDI----------RDILNEGDEVRVKVIK 245 (289)
Q Consensus 183 ~~~~~~G~iv~G-----~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~--~~~----------~~~~~iGd~V~vkV~~ 245 (289)
...-.+|+++.| ++.|+.+.+. | -...+|+...+..++. .+. .+--++|+.|+.+|.+
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~---G--~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~ 198 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIH---D--AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRN 198 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEET---T--TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEE
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEe---C--CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEE
Confidence 345578999999 6655555332 2 2678999988753321 110 0112369999999999
Q ss_pred EeCCCCe
Q 022938 246 IDREKSR 252 (289)
Q Consensus 246 id~e~~r 252 (289)
++..++-
T Consensus 199 ~~~~~~~ 205 (214)
T 2rf4_A 199 VHTTGRV 205 (214)
T ss_dssp EECCSSS
T ss_pred EEecCCE
Confidence 9975443
No 112
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=58.80 E-value=40 Score=22.99 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=31.9
Q ss_pred EEEEEEEEEc---CcEEEEECC-EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 103 YEGKIQGFNG---GGLLVRFFS-LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 103 v~g~V~~v~~---~G~~V~l~g-v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
.+|+|+..+. +|++-.-+| -. |++.+.+.... .+ ..||+|.+.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g-------~l------~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD-------LI------KKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG-------GC------CTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC-------CC------CCCCEEEEEEEe
Confidence 5899999984 344444444 56 99999986321 22 289999999864
No 113
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=58.52 E-value=22 Score=27.97 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=38.0
Q ss_pred cCCCEEEEEEEEEEc-CcE-EEEE-C-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 98 ESGFIYEGKIQGFNG-GGL-LVRF-F-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~-~G~-~V~l-~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
..|+..+|+|+..+. .|. |+.- + |-+.|+|++.+...+ .+ ..||.|.+.+...
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~-------~L------~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEY-------VP------VEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSB-------CC------CTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCC-------cC------CCCCEEEEEEEec
Confidence 368888999999984 333 4444 4 489999999985221 22 3899999999753
No 114
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=58.34 E-value=46 Score=23.56 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCCEEEEEEEEEEcCcE-EEEEC--CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGL-LVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~-~V~l~--gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
..+..+|+|+..+ .|. |+.-. +-+-|+|.+.+...+ . .+ ..||+|.+.+..-
T Consensus 15 ~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~~--~----~L------~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 15 AALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGNL--Q----DL------KVGDDVEFEVSSD 69 (89)
T ss_dssp CCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSCT--T----TC------CTTCCEEEEEEEC
T ss_pred cccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCcc--C----CC------CCCCEEEEEEEEC
Confidence 4467899999997 443 66655 499999999986431 1 22 2899999999643
No 115
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=55.71 E-value=89 Score=25.99 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=60.5
Q ss_pred cCCCEEEEEEEEEEc--CcE--EEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEE
Q 022938 98 ESGFIYEGKIQGFNG--GGL--LVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVF 172 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~--~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~l 172 (289)
..+..+.|+|+.+.. .|. -|.+. +-.-+++..+++.... . +... ..+|.+|-+.... .+
T Consensus 20 ~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs~~hiA~~~~-p-~~~~------l~vG~RVVA~~~~----~~---- 83 (213)
T 3dlm_A 20 RTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYH-P-PADK------LYVGSRVVAKYKD----GN---- 83 (213)
T ss_dssp TTSBEEEEEEEEEEEETTEEEEEEEESSSCEEEECGGGEEESSC-C-CGGG------CCTTCEEEEEEEC----SS----
T ss_pred cCCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEeecceEEEecC-C-CccE------EeEEEEEEEEecC----CC----
Confidence 468899999999886 353 57777 6667899888876421 1 1122 3499988777642 11
Q ss_pred EeecchhhhcccccccccEEEe----eeeeEEEEEecCCCceeEEEEEEccCc
Q 022938 173 SEKDAVWNKYSSRVNVEDIFVG----RDYGAFIHLRFPDGLYHLTGLVHVSEV 221 (289)
Q Consensus 173 S~k~~~~~~~~~~~~~G~iv~G----~~~G~fV~i~~~~G~~~i~Glv~~sel 221 (289)
...+..|-+.+. +.+-..|-+. +| ...+|+..++
T Consensus 84 ----------~~~fY~GiVaE~p~~~N~~RyLVFFD--DG---~~~Yv~~~~V 121 (213)
T 3dlm_A 84 ----------QVWLYAGIVAETPNVKNKLRFLIFFD--DG---YASYVTQSEL 121 (213)
T ss_dssp ----------CEEEEEEEEEECCCTTTTSCEEEEET--TS---CEEEECGGGE
T ss_pred ----------CcceeeeEEEECCccCCCceEEEEEe--CC---CcceecCceE
Confidence 123456666555 5556666664 66 8888887774
No 116
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=55.29 E-value=21 Score=25.86 Aligned_cols=50 Identities=6% Similarity=0.116 Sum_probs=35.6
Q ss_pred CCCEEEEEEEEEEcCcE-EEEEC--CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGL-LVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~-~V~l~--gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
.....+|+|+.. ..|. |+.-. +-+-|+|.+.+...+ +.+ ..||.|.+.+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~~------~~L------~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGDL------ETL------QPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSCT------TSC------CSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhcccc------CCC------CCCCEEEEEEE
Confidence 356679999988 5444 55554 489999999986431 122 28999999984
No 117
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=54.28 E-value=20 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=30.2
Q ss_pred eeeeEEEEEecCCCceeEEEEEEccCcCcccc-----cC-cccccCCCCEEEEE
Q 022938 195 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----QD-IRDILNEGDEVRVK 242 (289)
Q Consensus 195 ~~~G~fV~i~~~~G~~~i~Glv~~sels~~~~-----~~-~~~~~~iGd~V~vk 242 (289)
.+.++-|.+. +| -.+.++.+.|.|.+. .. +.+.+++||.|.|+
T Consensus 45 ~~~~~~v~~~--~g---~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 45 TPGAVEAFRK--NG---ETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp ETTEEEEEET--TS---CEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CCCeEEEEEc--CC---CeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 4445556563 43 456688899998752 34 66779999999998
No 118
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=53.63 E-value=42 Score=26.17 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=36.3
Q ss_pred CEEEEEEEEEEc---CcEEEEE--------CCEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 101 FIYEGKIQGFNG---GGLLVRF--------FSLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 101 ~iv~g~V~~v~~---~G~~V~l--------~gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
...+|+|+-.+. +|++..- ++-+.|+|.+.+..... . .+ ..|+.|.+.+..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~-~----~l------~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGF-R----SL------KEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSS-C----CC------CTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCC-c----cC------CCCCEEEEEEEEc
Confidence 346899999984 4555533 36899999999864322 1 12 3899999999754
No 119
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.81 E-value=38 Score=22.45 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.9
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC-CEEEEeecCCCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF-SLVGFLPFPQMSPS 134 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~-gv~g~ip~sels~~ 134 (289)
..|.-+-|+|++|.. .-|+|.++ +..-.+...++...
T Consensus 19 sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 19 TDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHA 58 (63)
T ss_dssp TTSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEECC
T ss_pred cCCCEEEEEEEEEecCCCEEEEEEccCceeEEEeeccccc
Confidence 467788888888884 45999999 88888888877543
No 120
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=50.71 E-value=81 Score=24.03 Aligned_cols=87 Identities=3% Similarity=-0.003 Sum_probs=55.6
Q ss_pred cccccccceeEeCCCCCCccceeEeecccccccCCc---ccccCCCeEEEEEEEEeCCCCeEeeeeecccccCCcchhhh
Q 022938 4 LSSRIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPL---IIERICQRNLCPVGKFSTNAAKITPTTVNPILDDSSDANNR 80 (289)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~---~~~~vG~~v~~~Vl~~d~~~~~i~ls~k~~l~~~~~~~~~~ 80 (289)
.++-|++.+|+|++.|.-. ....+.+++..+.-|. ..|.+||+|++.- +.+.
T Consensus 21 ~V~~v~~d~~~V~f~n~w~-~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~----~~~d-------------------- 75 (128)
T 3h8z_A 21 FVKDVHEDSVTIFFENNWQ-SERQIPFGDVRLPPPADYNKEITEGDEVEVYS----RANE-------------------- 75 (128)
T ss_dssp EEEEECSSEEEEEETTCTT-CCEEEEGGGEECCCCC----CCCTTCEEEEEE----CC----------------------
T ss_pred EEEEEeCCcEEEEEccccC-cceEechhhEEcCCCcccccCCCCCCEEEEEe----cCCC--------------------
Confidence 4566899999999987533 3456666666664433 4689999998853 2110
Q ss_pred hhhhhhhhHHHHHHHhhcCCCEEEEEEEEEEcCcEEEEECC----EEEEeecCCC
Q 022938 81 QSQSRSSADWKAARAYKESGFIYEGKIQGFNGGGLLVRFFS----LVGFLPFPQM 131 (289)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l~g----v~g~ip~sel 131 (289)
.++--...|+|+.+...-++|++.| ..-.++...+
T Consensus 76 ----------------~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rl 114 (128)
T 3h8z_A 76 ----------------QEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERL 114 (128)
T ss_dssp -----------------CCCEEEEEEEEEEETTEEEEEETTC----CEEECGGGE
T ss_pred ----------------CCcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhhe
Confidence 0233477999999997777888654 3344554444
No 121
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=48.58 E-value=9.9 Score=25.66 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.1
Q ss_pred HhhhhCCCChHHHHHHHhhhh
Q 022938 268 TLEKVIPQGLEPYLKSFYKKM 288 (289)
Q Consensus 268 ~~~~~~~g~~~~~~~~~~~~~ 288 (289)
..+.....+-.+|||+||+..
T Consensus 17 hi~mn~~edKIhAmNaYYrsV 37 (80)
T 2gsv_A 17 HIEMNQSEDKIHAMNSYYRSV 37 (80)
T ss_dssp HHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHhCccHhHHHHHHHHHHHH
Confidence 334456789999999999854
No 122
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=48.49 E-value=36 Score=28.11 Aligned_cols=51 Identities=14% Similarity=-0.049 Sum_probs=37.1
Q ss_pred EEEEEEEEEEcCcEEEEEC--CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCC
Q 022938 102 IYEGKIQGFNGGGLLVRFF--SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM 167 (289)
Q Consensus 102 iv~g~V~~v~~~G~~V~l~--gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~ 167 (289)
-+.|+|..+.+..++|+++ |..-++|.+.+..-+ .+|+.+...+...-++.
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~~l~---------------~~g~~v~l~~~~~vRed 56 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELP---------------EAGQEAIVFTHFVVRED 56 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCC---------------CTTSEEEEEEEEEEETT
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHHhcC---------------CCCCeEEEEEEEEEeeh
Confidence 4689999999999999999 466777755443211 16999998887655443
No 123
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=44.25 E-value=48 Score=21.16 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=28.4
Q ss_pred CEEEEEEEEEEcCcEE----EEECC--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 101 FIYEGKIQGFNGGGLL----VRFFS--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 101 ~iv~g~V~~v~~~G~~----V~l~g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
-.+.|+|.++...|.. ++++| +.+.++.... +.+...+|+.|.+.|.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~--------------~~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSV--------------ADLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHH--------------HHHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHH--------------HhCCCCCCCEEEEEEe
Confidence 4689999999988733 34443 3333442221 1123459999998874
No 124
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=41.57 E-value=92 Score=22.08 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=34.3
Q ss_pred EEEEEEEEEEc-CcE-EEE--------EC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEE
Q 022938 102 IYEGKIQGFNG-GGL-LVR--------FF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQA 163 (289)
Q Consensus 102 iv~g~V~~v~~-~G~-~V~--------l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~v 163 (289)
..+|+|+-.+. .|. ||. -. |-+.|+|.+.+...-. +.+ ..||.|.+.|..=
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~-----~~L------~eG~~V~f~v~~g 69 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF-----RSL------KEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSS-----CCC------CTTCEEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCC-----Ccc------CCCCEEEEEEEEC
Confidence 45899999884 343 443 23 5789999999854322 112 3899999998643
No 125
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=39.07 E-value=50 Score=21.30 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=29.1
Q ss_pred CEEEEEEEEEEcCcE----EEEEC-C--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEE
Q 022938 101 FIYEGKIQGFNGGGL----LVRFF-S--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVI 161 (289)
Q Consensus 101 ~iv~g~V~~v~~~G~----~V~l~-g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl 161 (289)
-.+.|+|.++...|. .++++ | +.+.++.... +.+...+|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~--------------~~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSV--------------EELGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHH--------------HHHTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHH--------------HHCCCCCCCEEEEEEe
Confidence 468999999998874 34444 3 3444443221 1233458999988764
No 126
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=38.78 E-value=1.3e+02 Score=23.12 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.2
Q ss_pred CCCEEEEEEEEEEcCcEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGLLVRF 119 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~~V~l 119 (289)
.|..+.|+|+.+.+..+.|++
T Consensus 106 ~G~~~~~~V~~v~~~~v~vD~ 126 (151)
T 2kr7_A 106 DNQTIQAIIKDFSATHVMVDY 126 (151)
T ss_dssp TTEEEEEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEEEECCCEEEEEC
Confidence 466678889999998888886
No 127
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=44.82 E-value=6.5 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=34.6
Q ss_pred EEEEEEEEEEc---CcEEEEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 102 IYEGKIQGFNG---GGLLVRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 102 iv~g~V~~v~~---~G~~V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
.++|+|+..+. +|++..-+ |-+.|+|.+.+..... ..+ ..||.|.+.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~-----~~l------~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGL-----HSL------EEGQDVIFDLEE 57 (70)
Confidence 36788888773 56665555 6899999999864321 112 289999998854
No 128
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=36.86 E-value=1.1e+02 Score=21.57 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCEEEEEEEEEEcCcE-EEEEC-CEEEEeecCCCC
Q 022938 99 SGFIYEGKIQGFNGGGL-LVRFF-SLVGFLPFPQMS 132 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~-~V~l~-gv~g~ip~sels 132 (289)
.|..+.|+|+++...|. .|.|. |..-.+...++.
T Consensus 34 D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IK 69 (85)
T 3qii_A 34 DCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVK 69 (85)
T ss_dssp TSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcc
Confidence 57788999999998765 57787 777777777764
No 129
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=1.1e+02 Score=20.52 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.2
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC-CEEEEeecCCCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF-SLVGFLPFPQMSPS 134 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~-gv~g~ip~sels~~ 134 (289)
..|.-+-|+|++|.. .-|+|.++ +..-.+...++...
T Consensus 21 sDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~~ 60 (68)
T 2e5p_A 21 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 60 (68)
T ss_dssp TTSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEECC
T ss_pred cCCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccccc
Confidence 479999999999995 45999999 89999998887654
No 130
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=33.16 E-value=22 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=17.1
Q ss_pred ccCcccccCCCCEEEE----------EEEEEe
Q 022938 226 IQDIRDILNEGDEVRV----------KVIKID 247 (289)
Q Consensus 226 ~~~~~~~~~iGd~V~v----------kV~~id 247 (289)
...++.+|++||.|+| .|+.++
T Consensus 11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~ 42 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVE 42 (69)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEEC
T ss_pred HHHceeeccCCCeEEEeccEEcCceEEEEEEe
Confidence 3556789999999986 577776
No 131
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=32.76 E-value=42 Score=22.35 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=25.9
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEecCCC
Q 022938 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262 (289)
Q Consensus 229 ~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~~ 262 (289)
+.+.+.+||.++++|+.++ .+.+.|.+.....
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~~ 41 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVK--GNQVRIGVNAPKE 41 (63)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEEECTT
T ss_pred CCCeEEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 4466778999999999998 5789998877543
No 132
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=32.65 E-value=41 Score=22.86 Aligned_cols=32 Identities=13% Similarity=0.504 Sum_probs=25.8
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEecCCC
Q 022938 229 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 262 (289)
Q Consensus 229 ~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~~ 262 (289)
..+.+.+||.|+++|++++ .+.+.|.+..-..
T Consensus 8 ~GEsI~IGd~I~ItVl~v~--g~~VrLGI~APk~ 39 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS--GQQVRIGINAPKD 39 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEECCTT
T ss_pred CCCeEEECCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 3466778999999999998 6889998877543
No 133
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=32.39 E-value=79 Score=21.51 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=27.4
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFP 129 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~s 129 (289)
+..|..++|+|.+..++-++++.+|..-++-..
T Consensus 32 L~NG~~l~G~I~~fD~ftVll~~~g~qqliYKh 64 (71)
T 2qtx_A 32 LRNGEVLDAEVTGVSNYEIMVKVGDRNLLVFKH 64 (71)
T ss_dssp ETTSCEEEEEEEEECSSEEEEEETTEEEEEEGG
T ss_pred EeCCeEEEEEEEEEcceEEEEEeCCceEEEEee
Confidence 468999999999999999999988766565543
No 134
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=32.27 E-value=31 Score=23.87 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=33.7
Q ss_pred CEEEEEEEEEEcCcEEEEEC-C--EEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 101 FIYEGKIQGFNGGGLLVRFF-S--LVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 101 ~iv~g~V~~v~~~G~~V~l~-g--v~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
+..+|+|..+.+.-=|+.-. | -+.|+|++.+... ..+ ..||.|.+.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~~g-------~~l------~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDG-------IEL------QAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCCSS-------CCC------CTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcCCC-------CcC------CCCCEEEEEEEE
Confidence 44578898886433355544 4 7999999998622 122 289999999864
No 135
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=31.36 E-value=1e+02 Score=19.50 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=16.7
Q ss_pred EEEEEEEeCCCCeEEEEEecC
Q 022938 240 RVKVIKIDREKSRITLSIKQL 260 (289)
Q Consensus 240 ~vkV~~id~e~~ri~lSlK~~ 260 (289)
.+.|.++|.+++++.+.+..+
T Consensus 22 ~g~v~~v~~~k~~v~V~v~~~ 42 (58)
T 1nz9_A 22 TGTVTEINPERGKVKVMVTIF 42 (58)
T ss_dssp EEEEEEEETTTTEEEEEEESS
T ss_pred EEEEEEEcCCCCEEEEEEEeC
Confidence 368999999888998877654
No 136
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=29.40 E-value=90 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=29.9
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels 132 (289)
+..|..+.|+|.+..++.+.++.+|..-++....++
T Consensus 26 L~nG~~l~G~I~~fD~f~VlL~~~g~~qLIYKhAIS 61 (77)
T 1kq1_A 26 FLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAIS 61 (77)
T ss_dssp ETTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEE
T ss_pred EeCCCEEEEEEEEECCcEEEEEECCeeEEEEeeeEE
Confidence 468999999999999999999988766677655554
No 137
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=29.18 E-value=1.2e+02 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEEEEEEEecCCcEEEEEeecch---h-----------hhcccccccccEEEe
Q 022938 155 IISVKVIQANEEMKKLVFSEKDAV---W-----------NKYSSRVNVEDIFVG 194 (289)
Q Consensus 155 ~V~vkVl~vd~~~~ri~lS~k~~~---~-----------~~~~~~~~~G~iv~G 194 (289)
.+...|.++|.+.+.+.++.-..+ | ...+..+++|+.|.=
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F 62 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAF 62 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEE
Confidence 478899999999999999865421 1 134677888887753
No 138
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=28.43 E-value=1.2e+02 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=28.6
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC--CEEEEeecCCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF--SLVGFLPFPQMSP 133 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~--gv~g~ip~sels~ 133 (289)
+.|..+.|+|.++.. ..+.|.+- |-...+|.+++..
T Consensus 16 ~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~ 55 (59)
T 1mhn_A 16 EDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLS 55 (59)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBC
T ss_pred CCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeC
Confidence 368999999999985 56677764 8888999888753
No 139
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.78 E-value=80 Score=23.09 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=19.6
Q ss_pred CcEEEEEeecchhhhcccccccccEEE
Q 022938 167 MKKLVFSEKDAVWNKYSSRVNVEDIFV 193 (289)
Q Consensus 167 ~~ri~lS~k~~~~~~~~~~~~~G~iv~ 193 (289)
.++|.++.-....+++...+++|+++.
T Consensus 50 ~G~I~at~~~~~~~~f~~~l~eG~vy~ 76 (114)
T 1ynx_A 50 SGEIRATAFNDFATKFNEILQEGKVYY 76 (114)
T ss_dssp TEEEEEEECHHHHHHHHHHSCSSSEEE
T ss_pred CCeEEEEECHHHHHHHHhhcccCcEEE
Confidence 347777776655666777889999874
No 140
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=27.24 E-value=1.6e+02 Score=20.61 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEEEEEEEecCCcEEEEEeecch---h-----------hhcccccccccEEEe
Q 022938 155 IISVKVIQANEEMKKLVFSEKDAV---W-----------NKYSSRVNVEDIFVG 194 (289)
Q Consensus 155 ~V~vkVl~vd~~~~ri~lS~k~~~---~-----------~~~~~~~~~G~iv~G 194 (289)
.+...|.++|.+.+++.++.-..+ | ...+..+++|+.|.=
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F 70 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAF 70 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEE
Confidence 478899999999999999865421 1 134677888887753
No 141
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=26.19 E-value=54 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=26.0
Q ss_pred CcccccCCCCEEEEEEEEEeCCCCeEEEEEecCC
Q 022938 228 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 261 (289)
Q Consensus 228 ~~~~~~~iGd~V~vkV~~id~e~~ri~lSlK~~~ 261 (289)
.+.+.+.+||.+++.|+.++ .+.+.|.+....
T Consensus 19 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk 50 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVK--GNQVRIGVNAPK 50 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEEET
T ss_pred cCCCEEEeCCCEEEEEEEEe--CCEEEEEEECCC
Confidence 34567889999999999998 678888887654
No 142
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=26.17 E-value=2.3e+02 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.5
Q ss_pred CCCEEEEEEEEEEcCcEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGLLVRF 119 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~~V~l 119 (289)
.|..+.|+|+++....++|++
T Consensus 97 ~G~~~~~~V~~v~~~~v~vD~ 117 (158)
T 3cgm_A 97 EGNPMPLTVVAVEGEEVTVDF 117 (158)
T ss_dssp TTEEEEEEEEEEETTEEEEEC
T ss_pred CCCEEEEEEEEECCCEEEEeC
Confidence 466778899999999999885
No 143
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.37 E-value=2.4e+02 Score=21.85 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=46.2
Q ss_pred CCEEEEEEEEEEcCcEE-EEEC-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEEeecc
Q 022938 100 GFIYEGKIQGFNGGGLL-VRFF-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA 177 (289)
Q Consensus 100 G~iv~g~V~~v~~~G~~-V~l~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS~k~~ 177 (289)
...+.|+|+....++.| |.+. |..-+++++-= . +...-...|+.|.|-....|..+++|+.-.+..
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GK---m---------Rk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~d 97 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK---L---------RKKVWINTSDIILVGLRDYQDNKADVILKYNAD 97 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCSG---G---------GGSCCCCTTCEEEEECSSSSSSCCEEEEEECTT
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccc---c---------eeeEEecCCCEEEEeeccCCCCeEEEEEEeCHH
Confidence 34579999999988875 7887 87777775431 1 111223489999998877777788888877543
No 144
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=25.24 E-value=62 Score=24.20 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.4
Q ss_pred ccCCCCEEEEEEEEEeCCCCeEE
Q 022938 232 ILNEGDEVRVKVIKIDREKSRIT 254 (289)
Q Consensus 232 ~~~iGd~V~vkV~~id~e~~ri~ 254 (289)
.|++||+|+|.+.-.+-++.|+.
T Consensus 18 ~f~~GDtv~V~~~i~EG~keRiQ 40 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSKKRLQ 40 (114)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCEEEEEEEEecCCceeee
Confidence 49999999998877765555553
No 145
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=24.83 E-value=1.3e+02 Score=20.74 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=33.2
Q ss_pred EEEEEEEEEcCcEEEEECCEEEE-eecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCcEEEEE
Q 022938 103 YEGKIQGFNGGGLLVRFFSLVGF-LPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS 173 (289)
Q Consensus 103 v~g~V~~v~~~G~~V~l~gv~g~-ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ri~lS 173 (289)
.+|+|.++....+-+.=+-+..+ .|.-.|.... .++. ......+||.|.|.+...+ .+.+.++
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~~l~wPaMTM~F~v--~~~~----~l~~lk~Gd~V~F~~~~~~--~g~~~it 69 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIPSAQWGAMTMEFAA--PPAG----LPQGLKAGDRVAFSFRLDP--HGMATLV 69 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCTTTTCCCEEEEEEC--CTTC----CCSSCSTTCEEEEEEEEET--TTEEEEE
T ss_pred EeEEEEEEccccEEEecCCccccCCCceEEEEEc--CChh----HhhcCCCCCEEEEEEEECC--CCeEEEE
Confidence 58999999987733332223333 3322222211 1111 1123459999999997654 3244443
No 146
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=24.62 E-value=83 Score=21.81 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=28.3
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCCC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQMS 132 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sels 132 (289)
+..|..++|.|.+..++-++++.+|..-++....+|
T Consensus 30 L~nG~~l~G~I~~fD~f~VlL~~~g~qqlIYKhAIS 65 (78)
T 3ahu_A 30 LLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAIS 65 (78)
T ss_dssp ETTSCEEEEEEEEECSSEEEEESSSCEEEEEGGGEE
T ss_pred EeCCeEEEEEEEEEcceEEEEEECCeeEEEEcceEE
Confidence 467999999999999999999987655555544443
No 147
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=23.75 E-value=1.5e+02 Score=19.13 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=27.5
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC--CEEEEeecCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF--SLVGFLPFPQMS 132 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~--gv~g~ip~sels 132 (289)
+.|..+.|+|.++.. ..+.|.+- |-.-.+|.+++.
T Consensus 21 ~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 21 EDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp TTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence 478999999999996 35667764 788888887763
No 148
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=23.08 E-value=80 Score=23.45 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=23.5
Q ss_pred ccccceeEeCCCCCCccceeEeecccccccCCcccccCCCeEE
Q 022938 7 RIGSNTCLDASSCTHSSLSLSLSLSSLVCVNPLIIERICQRNL 49 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~vG~~v~ 49 (289)
--|.|+|.+..+.......+.+.-....+..|...+..|+.+.
T Consensus 62 d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~ 104 (170)
T 3ry4_A 62 DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIM 104 (170)
T ss_dssp GCEEEEEEETTSBCCCCEEEEEECCSEEEECSCSEECTTCCEE
T ss_pred cCeEEEEEEeCCCceEeEEEEEECCceEecCCCceeecCCeEE
Confidence 3489999998554444444444433333444444455565543
No 149
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=22.93 E-value=1.8e+02 Score=21.69 Aligned_cols=23 Identities=9% Similarity=-0.292 Sum_probs=15.1
Q ss_pred ccccCCcccccCCCeEEEEEEEE
Q 022938 33 LVCVNPLIIERICQRNLCPVGKF 55 (289)
Q Consensus 33 ~~~~~p~~~~~vG~~v~~~Vl~~ 55 (289)
..+...--.|++||.|.+.+.-.
T Consensus 10 ~~~~~~iP~f~~GDtv~V~~~i~ 32 (114)
T 3r8s_P 10 EQMKQDVPSFRPGDTVEVKVWVV 32 (114)
T ss_dssp GGCCSCCCCCCTTCEEEEEEEEE
T ss_pred HHhccCCCccCCCCEEEEEEEEe
Confidence 33333333699999999887443
No 150
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=22.53 E-value=1.9e+02 Score=20.30 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=28.8
Q ss_pred cCCCEEEEEEEEEEc--CcEEEEEC--CEEEEeecCCCCC
Q 022938 98 ESGFIYEGKIQGFNG--GGLLVRFF--SLVGFLPFPQMSP 133 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~--~G~~V~l~--gv~g~ip~sels~ 133 (289)
..|..+.|+|.++.. ..+.|.+- |-.-.+|.++|..
T Consensus 23 ~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp 62 (88)
T 1g5v_A 23 EDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLS 62 (88)
T ss_dssp TTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBC
T ss_pred CCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHccc
Confidence 478999999999996 56777764 7777899888753
No 151
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=22.34 E-value=81 Score=24.59 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.0
Q ss_pred ccCCCCEEEEEEEEEeCCCCeE
Q 022938 232 ILNEGDEVRVKVIKIDREKSRI 253 (289)
Q Consensus 232 ~~~iGd~V~vkV~~id~e~~ri 253 (289)
.|++||+|+|.+.-.+-++.|+
T Consensus 21 ~F~~GDtV~V~~~i~EG~keRi 42 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGNRTRI 42 (146)
T ss_dssp CCCTTCEEEEEEEEECSSCEEE
T ss_pred CcCCCCEEEEEEEEccCCceee
Confidence 4999999999988776555555
No 152
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=22.32 E-value=1.7e+02 Score=24.15 Aligned_cols=51 Identities=6% Similarity=-0.074 Sum_probs=35.2
Q ss_pred EEEEEEEEEEcCcEEEEECCEE--EEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEEEecCCc
Q 022938 102 IYEGKIQGFNGGGLLVRFFSLV--GFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMK 168 (289)
Q Consensus 102 iv~g~V~~v~~~G~~V~l~gv~--g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~vd~~~~ 168 (289)
.++|+|..+.+..++++++|+- -++|.+.+.. ...|+.+.+.+.-+-++..
T Consensus 20 ~l~G~v~~~~~~~~Vi~v~gVGy~v~v~~~t~~~----------------l~~Ge~v~l~t~~~vRED~ 72 (212)
T 2ztd_A 20 SVRGEVLEVALDHVVIEAAGVGYRVNATPATLAT----------------LRQGTEARLITAMIVREDS 72 (212)
T ss_dssp EEEEEEEEECSSEEEEEETTEEEEEECCHHHHTT----------------CCTTSEEEEEEEEEEETTE
T ss_pred EEEEEEEEEECCEEEEEECCeeEEEEEChHhHHh----------------cCCCCEEEEEEEEEEecCC
Confidence 4799999999999999999643 3344322211 1279999998877655543
No 153
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=21.56 E-value=3e+02 Score=21.67 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCCEEEEEEEEEEcCcEEEEE
Q 022938 99 SGFIYEGKIQGFNGGGLLVRF 119 (289)
Q Consensus 99 ~G~iv~g~V~~v~~~G~~V~l 119 (289)
.|..+.++|+.+.+..+.|++
T Consensus 125 ~G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 125 DGSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp TSCEEEEEEEEEETTEEEEEC
T ss_pred CCCEEEEEEEEEcCCEEEEeC
Confidence 577778999999999999886
No 154
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=21.20 E-value=1.2e+02 Score=18.79 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=23.9
Q ss_pred cCCCEEEEEEEEEEcCc--EEEEEC--CEEEEeecCCC
Q 022938 98 ESGFIYEGKIQGFNGGG--LLVRFF--SLVGFLPFPQM 131 (289)
Q Consensus 98 ~~G~iv~g~V~~v~~~G--~~V~l~--gv~g~ip~sel 131 (289)
+.|..+.|+|.++...+ +.|.+- |-...+|.+++
T Consensus 14 ~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 14 EDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp TTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGE
T ss_pred CCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHE
Confidence 47889999999997543 556653 77788887765
No 155
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=21.14 E-value=61 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.7
Q ss_pred cccCCCCEEEEEEEEEeC
Q 022938 231 DILNEGDEVRVKVIKIDR 248 (289)
Q Consensus 231 ~~~~iGd~V~vkV~~id~ 248 (289)
..|++||+|..+++-.|.
T Consensus 11 ~iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 11 SIYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp SEECTTCEEEEEEEEECG
T ss_pred cccCCCCEEEEEEEEECC
Confidence 569999999999998874
No 156
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=20.97 E-value=1.4e+02 Score=18.38 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.4
Q ss_pred hcCCCEEEEEEEEEE-cCcEEEEECCEEEEeecCC
Q 022938 97 KESGFIYEGKIQGFN-GGGLLVRFFSLVGFLPFPQ 130 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~-~~G~~V~l~gv~g~ip~se 130 (289)
++.|+++. |.... +.....+.+|..|++|.+-
T Consensus 23 ~~~Gd~i~--v~~~~~~~Ww~g~~~g~~G~~P~~y 55 (59)
T 2g6f_X 23 FSKGDVIH--VTRVEEGGWWEGTHNGRTGWFPSNY 55 (59)
T ss_dssp BCTTCEEE--EEEECTTSEEEEEETTEEEEEEGGG
T ss_pred CCCCCEEE--EEEecCCCEEEEEECCcEEEEeHHH
Confidence 57899987 33333 4455677779999999654
No 157
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=20.85 E-value=81 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=14.5
Q ss_pred cCCCCEEEEEEEEEeCCCCeEE
Q 022938 233 LNEGDEVRVKVIKIDREKSRIT 254 (289)
Q Consensus 233 ~~iGd~V~vkV~~id~e~~ri~ 254 (289)
|++||+|+|.+.-. .++.|+.
T Consensus 4 f~~GDtv~V~~~i~-g~k~R~q 24 (98)
T 2ftc_K 4 FYVGSILRVTTADP-YASGKIS 24 (98)
T ss_pred cCCCCEEEEEEEEC-CCceEee
Confidence 78899999887555 3455553
No 158
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=20.85 E-value=1.2e+02 Score=19.04 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=24.2
Q ss_pred hcCCCEEEEEEEEEEcCcEEEEECCEEEEeecCCC
Q 022938 97 KESGFIYEGKIQGFNGGGLLVRFFSLVGFLPFPQM 131 (289)
Q Consensus 97 ~~~G~iv~g~V~~v~~~G~~V~l~gv~g~ip~sel 131 (289)
++.|+++...=....+.......+|..|++|.+-+
T Consensus 20 ~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv 54 (62)
T 2j6f_A 20 IRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54 (62)
T ss_dssp BCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGE
T ss_pred CcCCCEEEEEEecCCCCEEEEEECCcEEEechHHE
Confidence 57899887433213455567777899999997654
No 159
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=20.57 E-value=59 Score=23.04 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=34.2
Q ss_pred CEEEEEEEEEEcCcEEEEE-C-CEEEEeecCCCCCCccCcCcccchhcccccCCCCEEEEEEEE
Q 022938 101 FIYEGKIQGFNGGGLLVRF-F-SLVGFLPFPQMSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQ 162 (289)
Q Consensus 101 ~iv~g~V~~v~~~G~~V~l-~-gv~g~ip~sels~~~~~~~p~~~~~~~~~~~vG~~V~vkVl~ 162 (289)
+..+|+|+...+.-=|+.- + +-+.|+|++.+... +.+ .+||+|.+.+..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~~-------~~L------~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDG-------NQL------HIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGS-------CCC------CTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccCC-------CCC------CCCCEEEEEEEe
Confidence 4568999999742225555 4 58999999998631 122 289999998853
Done!