Query 022940
Match_columns 289
No_of_seqs 171 out of 1717
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 84.2 0.42 1.4E-05 31.0 1.5 30 132-161 16-45 (56)
2 3j21_g 50S ribosomal protein L 80.3 0.57 2E-05 29.9 1.1 30 132-161 11-40 (51)
3 1wfk_A Zinc finger, FYVE domai 75.3 1.5 5.3E-05 31.2 2.3 27 132-158 6-34 (88)
4 1x4u_A Zinc finger, FYVE domai 75.0 1.4 4.9E-05 30.9 2.0 25 134-158 13-39 (84)
5 1z2q_A LM5-1; membrane protein 73.1 1.8 6E-05 30.5 2.1 25 134-158 20-46 (84)
6 2yw8_A RUN and FYVE domain-con 71.7 1.8 6.2E-05 30.3 1.9 25 134-158 18-44 (82)
7 1joc_A EEA1, early endosomal a 70.6 1.9 6.6E-05 32.8 2.0 25 134-158 68-94 (125)
8 1dvp_A HRS, hepatocyte growth 64.0 2.8 9.6E-05 35.0 1.8 25 135-159 161-187 (220)
9 3t7l_A Zinc finger FYVE domain 62.2 3.7 0.00013 29.2 2.0 25 134-158 19-45 (90)
10 2dkt_A Ring finger and CHY zin 61.2 2.9 0.0001 32.6 1.3 45 130-174 78-126 (143)
11 1vfy_A Phosphatidylinositol-3- 61.1 2.4 8.1E-05 28.9 0.7 23 136-158 12-36 (73)
12 1y02_A CARP2, FYVE-ring finger 60.0 2.4 8.2E-05 32.1 0.6 23 136-158 20-44 (120)
13 3zyq_A Hepatocyte growth facto 55.6 3.9 0.00013 34.3 1.3 24 136-159 165-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 53.2 4.4 0.00015 25.6 0.9 21 136-156 12-32 (53)
15 1wfl_A Zinc finger protein 216 50.4 21 0.00072 24.4 4.0 40 133-173 23-67 (74)
16 2c6a_A Ubiquitin-protein ligas 47.1 6 0.0002 24.4 0.8 22 135-156 13-34 (46)
17 3j20_Y 30S ribosomal protein S 46.4 6.1 0.00021 24.9 0.8 24 133-156 17-44 (50)
18 3u5e_m 60S ribosomal protein L 44.7 6.6 0.00023 29.6 0.9 27 132-158 90-118 (128)
19 2dkt_A Ring finger and CHY zin 38.5 8.2 0.00028 30.0 0.6 31 137-167 103-136 (143)
20 2vrw_B P95VAV, VAV1, proto-onc 35.1 19 0.00064 32.5 2.5 31 133-163 355-393 (406)
21 1tac_A TAT protein; transcript 35.0 21 0.00072 24.9 2.1 14 135-155 24-37 (86)
22 2jrp_A Putative cytoplasmic pr 33.9 11 0.00039 26.2 0.6 22 135-157 18-39 (81)
23 3mi9_C Protein TAT; P-TEFB, HI 32.8 18 0.00062 25.3 1.5 14 135-155 24-37 (86)
24 3mpx_A FYVE, rhogef and PH dom 32.4 9.4 0.00032 34.8 0.0 25 134-158 374-400 (434)
25 2xzm_5 Ribosomal protein S26E 29.1 15 0.0005 27.5 0.6 20 148-167 19-38 (119)
26 3u5c_a 40S ribosomal protein S 29.0 15 0.00051 27.4 0.6 19 148-166 19-37 (119)
27 2zjr_Z 50S ribosomal protein L 24.8 26 0.0009 22.8 1.1 23 132-156 27-50 (60)
28 3v2d_5 50S ribosomal protein L 23.6 25 0.00086 22.9 0.8 23 132-156 27-50 (60)
29 1wil_A KIAA1045 protein; ring 22.8 54 0.0018 23.0 2.4 25 134-158 14-38 (89)
30 2apo_B Ribosome biogenesis pro 21.9 32 0.0011 22.4 1.1 22 134-157 5-26 (60)
31 2pg3_A Queuosine biosynthesis 21.3 21 0.00073 29.3 0.2 17 145-161 191-207 (232)
32 3jyw_9 60S ribosomal protein L 21.2 28 0.00095 23.6 0.7 29 132-160 23-55 (72)
33 1h7d_A Aminolevulinic acid syn 20.8 30 0.001 21.6 0.8 13 161-173 6-18 (49)
34 1twf_L ABC10-alpha, DNA-direct 20.5 41 0.0014 22.6 1.5 28 133-160 26-56 (70)
35 2dj8_A Protein CBFA2T1; zinc f 20.3 55 0.0019 20.8 2.1 22 133-157 13-34 (60)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=84.17 E-value=0.42 Score=30.99 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=25.5
Q ss_pred ccccccccccccCCCCCcccCccccccccc
Q 022940 132 HQGVRFCQKCNQFKPPRCHHCSVCRRCILK 161 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~~C~rCV~r 161 (289)
......|.+|...-|+|+..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 456789999999999999999999865544
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.29 E-value=0.57 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCCcccCccccccccc
Q 022940 132 HQGVRFCQKCNQFKPPRCHHCSVCRRCILK 161 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~~C~rCV~r 161 (289)
......|.+|...-|+++..|+.||.--+|
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 456789999999999999999999875444
No 3
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=75.29 E-value=1.5 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.6
Q ss_pred ccccccccccccC--CCCCcccCcccccc
Q 022940 132 HQGVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 132 ~~~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
..+...|..|+.. --.|-|||+.||+-
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCE
Confidence 4455678888742 34789999999873
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.97 E-value=1.4 Score=30.94 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.6
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
+...|..|+.. --.|-|||+.||+-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 34567777642 34788999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.13 E-value=1.8 Score=30.50 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=18.1
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
+...|..|+.. --.|-|||+.||+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcE
Confidence 45678888742 24688999999874
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.71 E-value=1.8 Score=30.28 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=17.9
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
+...|..|+.. --.|-|||+.||+-
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCE
Confidence 44568888742 24688999999874
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.60 E-value=1.9 Score=32.80 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=17.8
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
....|..|... --.|-|||+.||+-
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeE
Confidence 34568888742 24688999999974
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.96 E-value=2.8 Score=34.99 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=18.5
Q ss_pred cccccccccC--CCCCcccCccccccc
Q 022940 135 VRFCQKCNQF--KPPRCHHCSVCRRCI 159 (289)
Q Consensus 135 ~~~C~~C~~~--kP~RahHC~~C~rCV 159 (289)
...|..|+.. --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3689999742 246899999999743
No 9
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=62.20 E-value=3.7 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=17.5
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
+...|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCE
Confidence 34568888742 24578999999874
No 10
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=61.22 E-value=2.9 Score=32.55 Aligned_cols=45 Identities=29% Similarity=0.679 Sum_probs=32.7
Q ss_pred CcccccccccccccCCCC-CcccCcccccccccc--Cc-cCcccccccc
Q 022940 130 PKHQGVRFCQKCNQFKPP-RCHHCSVCRRCILKM--DH-HCVWVVNCVG 174 (289)
Q Consensus 130 ~~~~~~~~C~~C~~~kP~-RahHC~~C~rCV~r~--DH-HCpWv~nCIG 174 (289)
+......||.+|+.+.++ ...||..||-|..+- |- ||.=-|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 345677799999988543 468999999998872 22 7777777764
No 11
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.11 E-value=2.4 Score=28.94 Aligned_cols=23 Identities=30% Similarity=0.649 Sum_probs=16.6
Q ss_pred ccccccccC--CCCCcccCcccccc
Q 022940 136 RFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 136 ~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
..|..|+.. --.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 357788742 24688999999874
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.00 E-value=2.4 Score=32.08 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=16.8
Q ss_pred cccccccc--CCCCCcccCcccccc
Q 022940 136 RFCQKCNQ--FKPPRCHHCSVCRRC 158 (289)
Q Consensus 136 ~~C~~C~~--~kP~RahHC~~C~rC 158 (289)
..|..|+. .-..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56778874 224688999999983
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.61 E-value=3.9 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=17.4
Q ss_pred ccccccccC--CCCCcccCccccccc
Q 022940 136 RFCQKCNQF--KPPRCHHCSVCRRCI 159 (289)
Q Consensus 136 ~~C~~C~~~--kP~RahHC~~C~rCV 159 (289)
..|..|+.. --.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 579999731 235789999999843
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=53.25 E-value=4.4 Score=25.56 Aligned_cols=21 Identities=29% Similarity=0.795 Sum_probs=14.5
Q ss_pred ccccccccCCCCCcccCcccc
Q 022940 136 RFCQKCNQFKPPRCHHCSVCR 156 (289)
Q Consensus 136 ~~C~~C~~~kP~RahHC~~C~ 156 (289)
=.|.+|+..-||-..||..|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 457777777777777777664
No 15
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.40 E-value=21 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=23.0
Q ss_pred cccccccccccCCCCCcccCccccc--c---ccccCccCccccccc
Q 022940 133 QGVRFCQKCNQFKPPRCHHCSVCRR--C---ILKMDHHCVWVVNCV 173 (289)
Q Consensus 133 ~~~~~C~~C~~~kP~RahHC~~C~r--C---V~r~DHHCpWv~nCI 173 (289)
.....|..|+..-..=...|+ |+. | ..-=||.|++--.-.
T Consensus 23 ~~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp SCTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred CcCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 345689999754222237777 764 2 222388888654433
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.14 E-value=6 Score=24.41 Aligned_cols=22 Identities=36% Similarity=0.924 Sum_probs=16.4
Q ss_pred cccccccccCCCCCcccCcccc
Q 022940 135 VRFCQKCNQFKPPRCHHCSVCR 156 (289)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C~ 156 (289)
.=.|.+|+..-||-..||..|-
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTC
T ss_pred eEecccccccCCCccchhhHHH
Confidence 3458888888888888877664
No 17
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.40 E-value=6.1 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.565 Sum_probs=15.0
Q ss_pred cccccccccccCC----CCCcccCcccc
Q 022940 133 QGVRFCQKCNQFK----PPRCHHCSVCR 156 (289)
Q Consensus 133 ~~~~~C~~C~~~k----P~RahHC~~C~ 156 (289)
...++|++|..-. -...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 4578999997511 12345677776
No 18
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=44.74 E-value=6.6 Score=29.60 Aligned_cols=27 Identities=30% Similarity=0.733 Sum_probs=22.8
Q ss_pred ccccccccccccCCCCCcccCc--ccccc
Q 022940 132 HQGVRFCQKCNQFKPPRCHHCS--VCRRC 158 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~--~C~rC 158 (289)
.-....|.+|...-|+|+..|+ .||..
T Consensus 90 n~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 90 NCDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp HTSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred hcceEeeccccccCCchhhccchhhCCCc
Confidence 3456899999999999999999 48764
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.55 E-value=8.2 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=21.7
Q ss_pred cccccccCCCCCcccCcccccccc--ccC-ccCc
Q 022940 137 FCQKCNQFKPPRCHHCSVCRRCIL--KMD-HHCV 167 (289)
Q Consensus 137 ~C~~C~~~kP~RahHC~~C~rCV~--r~D-HHCp 167 (289)
.|..|++=+..--.||..||.|+. ..| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 344555555677899999999964 344 7774
No 20
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.12 E-value=19 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.554 Sum_probs=22.3
Q ss_pred cccccccccccC---CCCCcccCccccc-----cccccC
Q 022940 133 QGVRFCQKCNQF---KPPRCHHCSVCRR-----CILKMD 163 (289)
Q Consensus 133 ~~~~~C~~C~~~---kP~RahHC~~C~r-----CV~r~D 163 (289)
..+.+|..|+.. --.|-|||+.||. |..+..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 467899999853 2468899998864 555554
No 21
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=35.03 E-value=21 Score=24.93 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=9.6
Q ss_pred cccccccccCCCCCcccCccc
Q 022940 135 VRFCQKCNQFKPPRCHHCSVC 155 (289)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C 155 (289)
.-||.+| +.||..|
T Consensus 24 ~CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 24 RAHAKKS-------AYHSQVA 37 (86)
T ss_dssp CSSTTTT-------TTTCCCS
T ss_pred Cceecch-------hhhhhHH
Confidence 4677777 5677765
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.86 E-value=11 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.643 Sum_probs=12.4
Q ss_pred cccccccccCCCCCcccCccccc
Q 022940 135 VRFCQKCNQFKPPRCHHCSVCRR 157 (289)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C~r 157 (289)
...|..|+..-++.+ .|.+|+.
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 344666665555555 6666554
No 23
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=32.75 E-value=18 Score=25.28 Aligned_cols=14 Identities=57% Similarity=1.720 Sum_probs=9.0
Q ss_pred cccccccccCCCCCcccCccc
Q 022940 135 VRFCQKCNQFKPPRCHHCSVC 155 (289)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C 155 (289)
.-||.+| +.||..|
T Consensus 24 ~CYCKkC-------cyHCq~C 37 (86)
T 3mi9_C 24 NCYCKKC-------CFHCQVC 37 (86)
T ss_dssp SCCSTTG-------GGSSHHH
T ss_pred Cccccch-------hhhhhhh
Confidence 5677777 4666654
No 24
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.43 E-value=9.4 Score=34.81 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=0.0
Q ss_pred ccccccccccC--CCCCcccCcccccc
Q 022940 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~rC 158 (289)
....|..|+.. --.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34678888742 23578999999973
No 25
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=29.13 E-value=15 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.1
Q ss_pred CcccCccccccccccCccCc
Q 022940 148 RCHHCSVCRRCILKMDHHCV 167 (289)
Q Consensus 148 RahHC~~C~rCV~r~DHHCp 167 (289)
+.-||..|++||++----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKR 38 (119)
T ss_dssp CEEECTTTCCEEETTTSEEC
T ss_pred ccEeeCCccccCcccceeEE
Confidence 45589999999998655543
No 26
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=29.01 E-value=15 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.3
Q ss_pred CcccCccccccccccCccC
Q 022940 148 RCHHCSVCRRCILKMDHHC 166 (289)
Q Consensus 148 RahHC~~C~rCV~r~DHHC 166 (289)
+.-||..|++||++----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIK 37 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIK 37 (119)
T ss_dssp CEEECTTTCCEEEGGGSCE
T ss_pred ccEeeccccccccccceee
Confidence 3457999999999855444
No 27
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.84 E-value=26 Score=22.82 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=16.4
Q ss_pred ccccccccccccCCCCCccc-Ccccc
Q 022940 132 HQGVRFCQKCNQFKPPRCHH-CSVCR 156 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahH-C~~C~ 156 (289)
......|.+|...+ +.|| |..||
T Consensus 27 ~p~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 27 APNLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCCCEECTTTCCEE--CTTBCCTTTC
T ss_pred CCCceECCCCCCEe--CCceEcCCCC
Confidence 45667899998775 5555 77777
No 28
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.58 E-value=25 Score=22.93 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=15.7
Q ss_pred ccccccccccccCCCCCccc-Ccccc
Q 022940 132 HQGVRFCQKCNQFKPPRCHH-CSVCR 156 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahH-C~~C~ 156 (289)
......|++|...+ +.|| |..||
T Consensus 27 ~p~l~~c~~cGe~~--~~H~vc~~CG 50 (60)
T 3v2d_5 27 PPTLVPCPECKAMK--PPHTVCPECG 50 (60)
T ss_dssp CCCCEECTTTCCEE--CTTSCCTTTC
T ss_pred CCceeECCCCCCee--cceEEcCCCC
Confidence 34577889998654 4455 77776
No 29
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.83 E-value=54 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=20.8
Q ss_pred ccccccccccCCCCCcccCcccccc
Q 022940 134 GVRFCQKCNQFKPPRCHHCSVCRRC 158 (289)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~rC 158 (289)
....|..|..+-..--.-|++|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 4567999998887778889999985
No 30
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.95 E-value=32 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=15.2
Q ss_pred ccccccccccCCCCCcccCccccc
Q 022940 134 GVRFCQKCNQFKPPRCHHCSVCRR 157 (289)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~r 157 (289)
..+.|..|+.+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4678888876655 566777764
No 31
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.32 E-value=21 Score=29.35 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=13.5
Q ss_pred CCCCcccCccccccccc
Q 022940 145 KPPRCHHCSVCRRCILK 161 (289)
Q Consensus 145 kP~RahHC~~C~rCV~r 161 (289)
++.|..||..|+.|.+|
T Consensus 191 ~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TSCCTTTTSCSHHHHHH
T ss_pred CCCCCCcCCcCHhHHHH
Confidence 44455899999999887
No 32
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.17 E-value=28 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCCc----ccCcccccccc
Q 022940 132 HQGVRFCQKCNQFKPPRC----HHCSVCRRCIL 160 (289)
Q Consensus 132 ~~~~~~C~~C~~~kP~Ra----hHC~~C~rCV~ 160 (289)
+.....|+.|...+-.|. -||+.|++=+.
T Consensus 23 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 23 QHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp HHSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred hccCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 456678999997777774 48999987544
No 33
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=20.80 E-value=30 Score=21.59 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=10.7
Q ss_pred ccCccCccccccc
Q 022940 161 KMDHHCVWVVNCV 173 (289)
Q Consensus 161 r~DHHCpWv~nCI 173 (289)
.++|+||+++.+=
T Consensus 6 ~~l~~CPFL~R~p 18 (49)
T 1h7d_A 6 MLLRSCPVLSQGP 18 (49)
T ss_dssp CSCCSCCCCSSCS
T ss_pred hhhccCCchhcCC
Confidence 5789999998764
No 34
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.48 E-value=41 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=19.0
Q ss_pred cccccccccccC---CCCCcccCcccccccc
Q 022940 133 QGVRFCQKCNQF---KPPRCHHCSVCRRCIL 160 (289)
Q Consensus 133 ~~~~~C~~C~~~---kP~RahHC~~C~rCV~ 160 (289)
...-.|..|... ++.-+-||..||.=|+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 344678899753 5566778888887443
No 35
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=20.34 E-value=55 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=13.7
Q ss_pred cccccccccccCCCCCcccCccccc
Q 022940 133 QGVRFCQKCNQFKPPRCHHCSVCRR 157 (289)
Q Consensus 133 ~~~~~C~~C~~~kP~RahHC~~C~r 157 (289)
.....|..|... ..+.|+.|+.
T Consensus 13 ~~~~~C~~C~~~---~~~~Cs~C~~ 34 (60)
T 2dj8_A 13 DSSESCWNCGRK---ASETCSGCNT 34 (60)
T ss_dssp CCSCCCSSSCSC---CCEECTTTSC
T ss_pred CCCcccccCCCC---CcccCCCCCC
Confidence 455788888763 3455665553
Done!