Query 022941
Match_columns 289
No_of_seqs 227 out of 1588
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2679 Purple (tartrate-resis 100.0 1.6E-45 3.4E-50 309.6 21.0 237 45-285 39-331 (336)
2 PTZ00422 glideosome-associated 100.0 3.9E-44 8.4E-49 324.0 26.3 237 44-287 21-333 (394)
3 cd07378 MPP_ACP5 Homo sapiens 100.0 3.9E-34 8.5E-39 253.4 23.5 220 50-273 1-277 (277)
4 cd00839 MPP_PAPs purple acid p 100.0 5.6E-34 1.2E-38 254.5 21.4 228 47-283 2-294 (294)
5 cd07395 MPP_CSTP1 Homo sapiens 100.0 8.8E-31 1.9E-35 230.2 19.3 219 47-270 2-261 (262)
6 PLN02533 probable purple acid 100.0 2.9E-30 6.3E-35 240.4 22.9 223 47-284 137-419 (427)
7 PRK11148 cyclic 3',5'-adenosin 100.0 2.8E-29 6E-34 222.2 19.3 223 45-273 10-263 (275)
8 cd07396 MPP_Nbla03831 Homo sap 100.0 6.8E-28 1.5E-32 212.4 18.0 210 50-266 1-266 (267)
9 cd07402 MPP_GpdQ Enterobacter 100.0 5E-28 1.1E-32 209.8 15.8 207 51-263 1-239 (240)
10 KOG1378 Purple acid phosphatas 99.9 2.1E-26 4.5E-31 209.2 20.9 229 46-286 144-440 (452)
11 cd07399 MPP_YvnB Bacillus subt 99.9 2.2E-24 4.7E-29 184.0 15.9 186 50-269 1-211 (214)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 3.5E-22 7.6E-27 174.9 15.1 170 52-227 2-211 (256)
13 TIGR03767 P_acnes_RR metalloph 99.8 3E-19 6.5E-24 164.6 18.2 125 135-269 300-442 (496)
14 cd00842 MPP_ASMase acid sphing 99.8 1.9E-19 4.1E-24 161.0 15.4 159 65-227 52-262 (296)
15 TIGR03729 acc_ester putative p 99.8 2E-19 4.4E-24 156.0 14.9 190 51-240 1-237 (239)
16 cd07393 MPP_DR1119 Deinococcus 99.8 1E-19 2.2E-24 157.1 12.9 184 53-245 2-230 (232)
17 cd07383 MPP_Dcr2 Saccharomyces 99.8 9.4E-20 2E-24 153.8 11.9 153 48-235 1-187 (199)
18 cd07392 MPP_PAE1087 Pyrobaculu 99.8 3.2E-19 7E-24 148.5 14.1 176 52-239 1-188 (188)
19 COG1409 Icc Predicted phosphoh 99.8 3.5E-18 7.6E-23 151.9 21.2 214 50-269 1-243 (301)
20 PF00149 Metallophos: Calcineu 99.8 5E-18 1.1E-22 137.2 9.9 176 50-226 1-200 (200)
21 cd08163 MPP_Cdc1 Saccharomyces 99.7 1.8E-17 3.9E-22 144.8 13.6 150 74-227 39-229 (257)
22 cd07400 MPP_YydB Bacillus subt 99.7 2.9E-17 6.2E-22 131.3 11.1 128 52-240 1-144 (144)
23 cd07388 MPP_Tt1561 Thermus the 99.7 2.2E-16 4.8E-21 134.7 16.8 191 49-265 4-222 (224)
24 PRK11340 phosphodiesterase Yae 99.7 1.6E-16 3.6E-21 140.2 14.3 188 2-227 4-216 (271)
25 TIGR03768 RPA4764 metallophosp 99.7 7.7E-16 1.7E-20 140.9 18.6 129 137-271 305-463 (492)
26 cd07404 MPP_MS158 Microscilla 99.7 5.6E-17 1.2E-21 132.9 9.2 157 52-239 1-163 (166)
27 KOG1432 Predicted DNA repair e 99.6 3.7E-14 8.1E-19 124.2 17.3 223 45-268 49-357 (379)
28 PF12850 Metallophos_2: Calcin 99.6 3.2E-15 6.9E-20 120.6 8.1 155 50-262 1-156 (156)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.6 1.3E-14 2.8E-19 124.0 10.8 176 51-241 1-217 (223)
30 cd07394 MPP_Vps29 Homo sapiens 99.5 1.7E-12 3.7E-17 107.5 19.3 169 51-277 1-172 (178)
31 cd07385 MPP_YkuE_C Bacillus su 99.5 2.5E-13 5.4E-18 116.3 11.3 145 49-226 1-166 (223)
32 cd07379 MPP_239FB Homo sapiens 99.5 3.3E-13 7.2E-18 106.7 10.6 125 51-238 1-134 (135)
33 cd00841 MPP_YfcE Escherichia c 99.4 8.9E-13 1.9E-17 106.6 11.1 153 51-268 1-154 (155)
34 PF14582 Metallophos_3: Metall 99.4 2E-12 4.4E-17 107.8 12.2 199 51-267 7-253 (255)
35 TIGR00040 yfcE phosphoesterase 99.4 2.9E-12 6.2E-17 104.1 12.7 154 50-265 1-156 (158)
36 cd00838 MPP_superfamily metall 99.4 5.3E-12 1.2E-16 97.6 11.2 123 53-238 1-130 (131)
37 PRK09453 phosphodiesterase; Pr 99.4 3.7E-11 8.1E-16 99.9 16.2 170 50-280 1-180 (182)
38 COG2129 Predicted phosphoester 99.3 2.2E-10 4.8E-15 95.8 18.6 205 49-269 3-224 (226)
39 cd08165 MPP_MPPE1 human MPPE1 99.3 1.6E-11 3.4E-16 99.5 9.9 112 71-242 29-152 (156)
40 TIGR00583 mre11 DNA repair pro 99.3 4.4E-10 9.5E-15 104.0 19.9 95 177-281 201-303 (405)
41 cd07403 MPP_TTHA0053 Thermus t 99.3 3.5E-11 7.5E-16 94.4 10.3 114 53-237 1-120 (129)
42 cd07397 MPP_DevT Myxococcus xa 99.3 1.4E-10 3E-15 99.5 14.5 183 50-241 1-234 (238)
43 PF09423 PhoD: PhoD-like phosp 99.2 6.7E-10 1.4E-14 105.2 16.3 219 45-268 101-453 (453)
44 COG0622 Predicted phosphoester 99.2 1.7E-09 3.8E-14 88.5 15.8 164 50-273 2-167 (172)
45 COG1408 Predicted phosphohydro 99.2 2.8E-10 6.1E-15 100.7 11.8 94 25-121 21-118 (284)
46 COG1768 Predicted phosphohydro 99.1 6.6E-10 1.4E-14 89.3 10.0 151 80-239 43-218 (230)
47 cd07384 MPP_Cdc1_like Saccharo 99.1 6.9E-10 1.5E-14 91.3 10.2 117 68-243 33-168 (171)
48 cd08166 MPP_Cdc1_like_1 unchar 99.1 1.1E-09 2.3E-14 91.2 10.0 107 70-227 32-148 (195)
49 KOG3770 Acid sphingomyelinase 99.1 2.4E-09 5.2E-14 100.7 13.4 182 68-260 197-443 (577)
50 PRK05340 UDP-2,3-diacylglucosa 99.0 1.6E-09 3.5E-14 94.1 10.7 70 51-122 2-84 (241)
51 TIGR01854 lipid_A_lpxH UDP-2,3 99.0 1.1E-09 2.3E-14 94.6 8.3 68 53-122 2-82 (231)
52 COG0420 SbcD DNA repair exonuc 99.0 1.2E-08 2.7E-13 94.8 14.5 70 50-119 1-86 (390)
53 PHA02546 47 endonuclease subun 99.0 3.9E-08 8.5E-13 89.7 17.5 71 50-120 1-88 (340)
54 cd07410 MPP_CpdB_N Escherichia 98.9 8.8E-08 1.9E-12 84.9 17.3 98 161-270 169-269 (277)
55 TIGR00619 sbcd exonuclease Sbc 98.8 3.5E-08 7.5E-13 86.3 9.6 70 50-119 1-86 (253)
56 cd07406 MPP_CG11883_N Drosophi 98.8 7.7E-07 1.7E-11 78.1 18.0 171 66-262 24-237 (257)
57 cd07398 MPP_YbbF-LpxH Escheric 98.8 1.3E-08 2.9E-13 86.6 6.7 38 203-240 178-216 (217)
58 cd07390 MPP_AQ1575 Aquifex aeo 98.7 4.1E-08 8.9E-13 80.5 6.8 40 79-119 41-80 (168)
59 cd07408 MPP_SA0022_N Staphyloc 98.7 2.2E-06 4.8E-11 75.2 17.8 199 50-267 1-251 (257)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.7 4E-07 8.7E-12 79.8 13.0 172 52-227 1-229 (262)
61 cd00845 MPP_UshA_N_like Escher 98.7 1.8E-06 3.9E-11 75.3 16.9 188 50-262 1-238 (252)
62 COG2908 Uncharacterized protei 98.7 3.8E-08 8.1E-13 83.4 5.9 175 54-241 2-215 (237)
63 cd08164 MPP_Ted1 Saccharomyces 98.7 5.8E-08 1.2E-12 80.8 6.6 44 76-119 40-109 (193)
64 cd07382 MPP_DR1281 Deinococcus 98.5 9.8E-06 2.1E-10 70.7 17.0 172 51-244 1-200 (255)
65 cd07411 MPP_SoxB_N Thermus the 98.5 1.3E-05 2.9E-10 70.5 17.8 74 168-264 176-254 (264)
66 cd07412 MPP_YhcR_N Bacillus su 98.4 1.5E-05 3.2E-10 71.1 16.3 72 167-241 183-260 (288)
67 PRK10966 exonuclease subunit S 98.3 1.1E-06 2.4E-11 81.9 7.3 70 50-119 1-85 (407)
68 cd07407 MPP_YHR202W_N Saccharo 98.3 6.9E-05 1.5E-09 66.6 18.0 69 163-240 175-247 (282)
69 PRK09558 ushA bifunctional UDP 98.3 9E-05 2E-09 72.0 20.3 174 46-226 31-257 (551)
70 PRK04036 DNA polymerase II sma 98.3 3.3E-05 7.2E-10 74.1 15.3 76 45-120 239-342 (504)
71 PRK09419 bifunctional 2',3'-cy 98.2 6.9E-05 1.5E-09 78.9 17.7 186 46-241 657-898 (1163)
72 COG3540 PhoD Phosphodiesterase 98.2 3.4E-06 7.5E-11 77.7 6.6 92 135-226 300-418 (522)
73 PRK09419 bifunctional 2',3'-cy 98.2 0.00024 5.2E-09 74.8 20.9 53 169-227 228-281 (1163)
74 cd07425 MPP_Shelphs Shewanella 98.2 7.8E-07 1.7E-11 75.5 1.8 140 79-227 31-180 (208)
75 TIGR00282 metallophosphoestera 98.2 0.00011 2.4E-09 64.4 15.2 175 50-244 1-203 (266)
76 COG0737 UshA 5'-nucleotidase/2 98.2 0.00024 5.3E-09 68.5 19.1 201 44-260 21-280 (517)
77 cd07405 MPP_UshA_N Escherichia 98.2 0.00028 6.1E-09 62.8 18.2 59 165-227 164-222 (285)
78 COG4186 Predicted phosphoester 98.1 5.1E-05 1.1E-09 60.1 11.0 113 72-227 36-149 (186)
79 cd07380 MPP_CWF19_N Schizosacc 98.0 2.9E-05 6.2E-10 62.3 8.7 64 53-119 1-68 (150)
80 PRK09418 bifunctional 2',3'-cy 98.0 0.0015 3.3E-08 65.6 22.0 69 165-241 235-305 (780)
81 KOG3662 Cell division control 98.0 0.00014 3.1E-09 66.7 13.0 102 47-148 46-184 (410)
82 cd07409 MPP_CD73_N CD73 ecto-5 98.0 0.00087 1.9E-08 59.6 17.4 42 170-227 177-219 (281)
83 cd07391 MPP_PF1019 Pyrococcus 97.9 2.1E-05 4.5E-10 64.7 6.2 53 67-119 28-86 (172)
84 TIGR00024 SbcD_rel_arch putati 97.9 2.9E-05 6.4E-10 66.6 5.9 70 50-119 15-100 (225)
85 PRK00166 apaH diadenosine tetr 97.8 3.8E-05 8.3E-10 67.8 5.1 67 51-120 2-68 (275)
86 TIGR01390 CycNucDiestase 2',3' 97.7 0.003 6.4E-08 62.4 18.7 55 165-227 186-241 (626)
87 TIGR01530 nadN NAD pyrophospha 97.7 0.00084 1.8E-08 65.3 14.3 143 68-227 37-219 (550)
88 PRK09420 cpdB bifunctional 2', 97.6 0.01 2.2E-07 58.8 20.6 53 168-227 211-264 (649)
89 KOG4419 5' nucleotidase [Nucle 97.6 0.002 4.2E-08 61.4 14.6 56 162-226 212-269 (602)
90 PHA02239 putative protein phos 97.6 9.2E-05 2E-09 64.0 5.4 67 51-120 2-72 (235)
91 cd07424 MPP_PrpA_PrpB PrpA and 97.6 9.4E-05 2E-09 62.7 5.4 64 51-119 2-65 (207)
92 cd07386 MPP_DNA_pol_II_small_a 97.6 0.00013 2.8E-09 63.3 5.6 29 214-242 191-220 (243)
93 cd08162 MPP_PhoA_N Synechococc 97.5 0.0069 1.5E-07 54.7 16.5 46 167-227 199-245 (313)
94 cd07422 MPP_ApaH Escherichia c 97.5 0.00013 2.9E-09 63.8 5.0 65 53-120 2-66 (257)
95 PRK11907 bifunctional 2',3'-cy 97.5 0.017 3.7E-07 58.4 19.7 54 168-227 302-355 (814)
96 PRK11439 pphA serine/threonine 97.3 0.00026 5.6E-09 60.5 4.6 65 51-120 18-82 (218)
97 KOG2310 DNA repair exonuclease 97.3 0.0094 2E-07 56.3 15.0 44 47-90 11-62 (646)
98 KOG3325 Membrane coat complex 97.3 0.0037 8E-08 49.2 10.2 77 208-284 101-182 (183)
99 PRK09968 serine/threonine-spec 97.3 0.0004 8.6E-09 59.4 4.8 64 51-119 16-79 (218)
100 TIGR00668 apaH bis(5'-nucleosy 97.2 0.00052 1.1E-08 60.4 4.6 66 51-119 2-67 (279)
101 cd07423 MPP_PrpE Bacillus subt 97.0 0.00044 9.6E-09 59.7 2.5 67 51-120 2-79 (234)
102 cd07421 MPP_Rhilphs Rhilph pho 96.9 0.0015 3.2E-08 57.9 5.4 66 51-119 3-78 (304)
103 cd00144 MPP_PPP_family phospho 96.9 0.00079 1.7E-08 57.4 3.5 64 53-120 1-67 (225)
104 cd07413 MPP_PA3087 Pseudomonas 96.9 0.0011 2.3E-08 56.9 4.1 66 52-120 1-75 (222)
105 PRK13625 bis(5'-nucleosyl)-tet 96.8 0.0012 2.6E-08 57.5 3.9 66 51-119 2-77 (245)
106 COG1407 Predicted ICC-like pho 96.8 0.0025 5.5E-08 54.5 5.6 72 48-119 18-108 (235)
107 COG1692 Calcineurin-like phosp 96.7 0.3 6.5E-06 42.0 17.4 171 50-244 1-202 (266)
108 cd07381 MPP_CapA CapA and rela 96.6 0.14 2.9E-06 44.3 15.0 56 164-227 165-220 (239)
109 cd07389 MPP_PhoD Bacillus subt 95.9 0.092 2E-06 44.8 10.2 27 201-227 177-205 (228)
110 smart00854 PGA_cap Bacterial c 95.6 0.87 1.9E-05 39.3 15.1 56 164-227 163-218 (239)
111 PF14008 Metallophos_C: Iron/z 95.5 0.032 6.9E-07 37.6 4.6 48 232-279 2-62 (62)
112 PF13277 YmdB: YmdB-like prote 95.3 0.6 1.3E-05 40.5 12.8 170 53-244 1-198 (253)
113 COG1311 HYS2 Archaeal DNA poly 94.9 0.085 1.8E-06 49.5 6.9 76 44-119 220-319 (481)
114 cd07420 MPP_RdgC Drosophila me 94.5 0.037 8E-07 50.0 3.4 24 203-226 253-276 (321)
115 cd07418 MPP_PP7 PP7, metalloph 94.0 0.058 1.3E-06 49.7 3.7 66 51-120 67-137 (377)
116 cd07416 MPP_PP2B PP2B, metallo 93.5 0.088 1.9E-06 47.3 4.0 66 51-120 44-113 (305)
117 smart00156 PP2Ac Protein phosp 93.0 0.11 2.5E-06 45.8 3.9 66 51-120 29-98 (271)
118 cd07417 MPP_PP5_C PP5, C-termi 92.9 0.094 2E-06 47.4 3.3 24 203-226 233-256 (316)
119 KOG2863 RNA lariat debranching 92.8 1.1 2.4E-05 40.7 9.6 24 204-227 208-231 (456)
120 PTZ00480 serine/threonine-prot 92.0 0.2 4.3E-06 45.3 4.0 66 51-120 60-129 (320)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 91.2 0.21 4.6E-06 44.5 3.4 64 52-119 44-111 (285)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 90.9 0.23 4.9E-06 44.5 3.3 24 203-226 222-245 (293)
123 cd07419 MPP_Bsu1_C Arabidopsis 90.5 0.21 4.5E-06 45.1 2.7 22 203-224 242-263 (311)
124 PF09587 PGA_cap: Bacterial ca 89.5 1.6 3.4E-05 37.9 7.4 58 163-226 169-228 (250)
125 PTZ00239 serine/threonine prot 89.4 0.44 9.6E-06 42.8 3.9 24 203-226 215-238 (303)
126 PTZ00244 serine/threonine-prot 89.4 0.28 6.1E-06 43.8 2.6 24 203-226 224-247 (294)
127 COG5555 Cytolysin, a secreted 88.1 0.56 1.2E-05 41.3 3.4 114 163-284 254-389 (392)
128 PF04042 DNA_pol_E_B: DNA poly 84.6 1.5 3.1E-05 36.9 4.3 68 52-119 1-89 (209)
129 KOG3947 Phosphoesterases [Gene 83.7 3.8 8.3E-05 36.0 6.4 68 44-121 56-126 (305)
130 cd07387 MPP_PolD2_C PolD2 (DNA 83.2 2.5 5.4E-05 37.0 5.2 29 215-243 204-238 (257)
131 KOG2476 Uncharacterized conser 81.1 5.7 0.00012 37.4 6.8 66 50-118 6-75 (528)
132 COG2949 SanA Uncharacterized m 71.7 15 0.00032 31.1 6.2 27 65-92 79-105 (235)
133 PTZ00235 DNA polymerase epsilo 69.9 16 0.00034 32.6 6.4 73 45-120 23-121 (291)
134 cd07424 MPP_PrpA_PrpB PrpA and 66.7 7.1 0.00015 32.7 3.6 28 214-241 168-196 (207)
135 PRK09968 serine/threonine-spec 66.7 6.5 0.00014 33.4 3.3 29 213-241 178-207 (218)
136 COG1168 MalY Bifunctional PLP- 60.2 36 0.00078 31.5 6.9 58 163-227 146-213 (388)
137 PF10518 TAT_signal: TAT (twin 58.8 3.1 6.8E-05 22.7 -0.0 20 1-20 2-21 (26)
138 COG0377 NuoB NADH:ubiquinone o 53.9 46 0.001 27.5 5.9 63 34-102 61-124 (194)
139 COG1646 Predicted phosphate-bi 51.8 27 0.00059 30.0 4.5 44 76-119 37-81 (240)
140 PF03076 GP3: Equine arteritis 50.9 87 0.0019 23.9 6.5 35 46-89 38-72 (160)
141 KOG0374 Serine/threonine speci 49.7 26 0.00055 32.0 4.3 64 203-271 233-302 (331)
142 cd07386 MPP_DNA_pol_II_small_a 48.9 15 0.00033 31.5 2.7 68 53-120 2-93 (243)
143 COG2237 Predicted membrane pro 48.5 51 0.0011 30.2 5.9 49 46-94 63-112 (364)
144 COG2086 FixA Electron transfer 47.8 34 0.00074 30.0 4.6 30 63-93 94-123 (260)
145 PHA00407 phage lambda Rz1-like 47.3 22 0.00048 24.7 2.7 23 5-27 29-51 (84)
146 PRK11439 pphA serine/threonine 45.5 24 0.00052 29.8 3.3 28 214-241 179-207 (218)
147 cd02812 PcrB_like PcrB_like pr 44.3 79 0.0017 27.0 6.2 47 72-119 17-65 (219)
148 KOG0394 Ras-related GTPase [Ge 44.1 0.82 1.8E-05 37.8 -5.5 56 2-57 69-126 (210)
149 PF13721 SecD-TM1: SecD export 41.9 39 0.00086 25.0 3.6 31 1-31 1-31 (101)
150 PRK10834 vancomycin high tempe 41.1 1.7E+02 0.0038 25.3 7.9 40 51-91 47-92 (239)
151 TIGR02707 butyr_kinase butyrat 39.1 43 0.00093 30.8 4.1 48 71-119 282-331 (351)
152 PF03808 Glyco_tran_WecB: Glyc 37.8 95 0.0021 25.1 5.6 54 161-224 58-111 (172)
153 PF06874 FBPase_2: Firmicute f 36.9 64 0.0014 31.9 5.0 55 204-258 509-573 (640)
154 COG2875 CobM Precorrin-4 methy 35.5 41 0.00088 29.0 3.1 51 67-118 63-113 (254)
155 cd07423 MPP_PrpE Bacillus subt 35.0 46 0.001 28.4 3.5 28 214-241 181-209 (234)
156 PRK10799 metal-binding protein 34.7 47 0.001 28.8 3.5 43 179-225 58-100 (247)
157 PHA02902 putative IMV membrane 34.3 84 0.0018 21.1 3.7 22 7-28 6-27 (70)
158 COG0488 Uup ATPase components 34.2 49 0.0011 32.3 3.8 38 138-186 173-210 (530)
159 KOG0371 Serine/threonine prote 33.5 65 0.0014 28.3 4.0 69 46-119 56-129 (319)
160 cd06533 Glyco_transf_WecG_TagA 32.8 1.3E+02 0.0029 24.3 5.7 53 161-223 56-108 (171)
161 TIGR01769 GGGP geranylgeranylg 32.6 79 0.0017 26.7 4.4 44 76-119 20-64 (205)
162 PF05984 Cytomega_UL20A: Cytom 32.5 33 0.00071 24.3 1.7 13 80-92 68-80 (100)
163 PRK10936 TMAO reductase system 31.7 2.4E+02 0.0053 25.3 7.9 41 47-88 44-84 (343)
164 COG4143 TbpA ABC-type thiamine 31.1 2.1E+02 0.0047 26.0 7.0 12 47-58 55-66 (336)
165 cd01984 AANH_like Adenine nucl 30.3 1.8E+02 0.004 19.9 5.9 50 159-225 10-59 (86)
166 TIGR01409 TAT_signal_seq Tat ( 30.3 41 0.00089 18.6 1.6 16 1-16 1-16 (29)
167 PF01012 ETF: Electron transfe 30.2 1.4E+02 0.0029 23.7 5.3 68 200-282 76-149 (164)
168 PRK12342 hypothetical protein; 30.1 1.1E+02 0.0023 26.8 5.0 41 51-92 80-120 (254)
169 TIGR01425 SRP54_euk signal rec 30.1 2.6E+02 0.0057 26.5 7.8 92 49-146 100-192 (429)
170 PRK10966 exonuclease subunit S 29.4 2.5E+02 0.0053 26.4 7.6 55 215-271 221-279 (407)
171 COG0788 PurU Formyltetrahydrof 29.1 48 0.001 29.1 2.5 15 105-119 114-128 (287)
172 PLN00214 putative protein; Pro 28.8 37 0.00081 25.6 1.6 29 1-29 1-29 (115)
173 COG1066 Sms Predicted ATP-depe 28.8 1.4E+02 0.003 28.3 5.6 61 165-225 158-221 (456)
174 PRK00994 F420-dependent methyl 28.2 2.2E+02 0.0049 24.7 6.3 67 45-115 27-94 (277)
175 TIGR01768 GGGP-family geranylg 28.1 1.1E+02 0.0025 26.1 4.6 43 77-119 24-66 (223)
176 PF12553 DUF3742: Protein of u 28.1 40 0.00086 21.9 1.4 19 14-32 2-20 (54)
177 COG1058 CinA Predicted nucleot 27.9 1.2E+02 0.0026 26.6 4.8 35 50-92 38-72 (255)
178 PRK14817 NADH dehydrogenase su 27.5 2.9E+02 0.0064 22.8 6.7 81 3-92 34-114 (181)
179 PF11466 Doppel: Prion-like pr 27.1 1E+02 0.0022 17.3 2.7 24 1-28 1-24 (30)
180 PF07172 GRP: Glycine rich pro 26.8 62 0.0014 23.7 2.5 6 25-30 23-28 (95)
181 PRK14818 NADH dehydrogenase su 26.6 1.2E+02 0.0026 24.8 4.2 17 78-94 95-111 (173)
182 PRK02710 plastocyanin; Provisi 26.6 85 0.0018 23.8 3.3 14 1-14 1-14 (119)
183 PF13481 AAA_25: AAA domain; P 26.4 2.6E+02 0.0057 22.4 6.6 64 160-223 125-188 (193)
184 TIGR02855 spore_yabG sporulati 26.0 62 0.0013 28.6 2.7 24 200-223 139-163 (283)
185 PF05582 Peptidase_U57: YabG p 25.5 72 0.0016 28.3 3.0 24 200-223 140-164 (287)
186 COG1927 Mtd Coenzyme F420-depe 25.4 3.3E+02 0.0072 23.2 6.7 66 45-114 27-93 (277)
187 PLN02755 complex I subunit 25.3 48 0.001 22.8 1.5 34 2-35 30-63 (71)
188 PRK14820 NADH dehydrogenase su 25.2 1.9E+02 0.0041 23.9 5.2 45 44-93 68-113 (180)
189 PF02350 Epimerase_2: UDP-N-ac 24.8 64 0.0014 29.5 2.8 44 69-116 56-99 (346)
190 PRK04169 geranylgeranylglycery 24.5 1.6E+02 0.0034 25.4 4.9 43 77-119 29-71 (232)
191 PF07819 PGAP1: PGAP1-like pro 24.4 2E+02 0.0043 24.4 5.5 12 108-119 4-15 (225)
192 PRK10081 entericidin B membran 23.9 84 0.0018 19.9 2.3 21 10-30 7-27 (48)
193 PF11337 DUF3139: Protein of u 23.8 95 0.0021 22.0 2.9 30 1-30 1-30 (85)
194 KOG0373 Serine/threonine speci 23.4 1.7E+02 0.0036 25.2 4.7 64 51-119 47-115 (306)
195 TIGR01658 EYA-cons_domain eyes 22.2 44 0.00095 29.1 1.0 50 10-59 184-240 (274)
196 PRK14347 lipoate-protein ligas 22.0 1.2E+02 0.0026 25.7 3.7 36 158-193 15-50 (209)
197 TIGR00486 YbgI_SA1388 dinuclea 21.9 1.1E+02 0.0023 26.6 3.4 43 179-225 59-101 (249)
198 PHA03008 hypothetical protein; 21.6 2.2E+02 0.0048 23.9 4.9 55 178-238 162-220 (234)
199 cd01715 ETF_alpha The electron 21.5 2.5E+02 0.0053 22.4 5.4 26 200-225 69-94 (168)
200 PF04123 DUF373: Domain of unk 21.5 2.2E+02 0.0048 26.1 5.5 48 46-93 63-111 (344)
201 PF01784 NIF3: NIF3 (NGG1p int 21.5 1.2E+02 0.0026 26.1 3.6 44 179-225 55-98 (241)
202 PRK09810 entericidin A; Provis 21.4 1.2E+02 0.0026 18.5 2.5 16 16-31 10-25 (41)
203 PRK03011 butyrate kinase; Prov 21.3 1.3E+02 0.0029 27.7 4.1 46 72-119 285-333 (358)
204 COG1311 HYS2 Archaeal DNA poly 20.7 55 0.0012 31.2 1.5 27 215-241 419-446 (481)
205 cd03413 CbiK_C Anaerobic cobal 20.5 1.2E+02 0.0025 22.4 2.9 12 108-119 61-72 (103)
206 cd01137 PsaA Metal binding pro 20.5 2.7E+02 0.0059 24.5 5.8 25 201-225 213-237 (287)
207 COG2843 PgsA Putative enzyme o 20.2 2.6E+02 0.0057 25.9 5.7 45 175-226 223-268 (372)
208 PF11119 DUF2633: Protein of u 20.1 1.5E+02 0.0033 19.6 3.0 22 2-23 2-23 (59)
No 1
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=309.56 Aligned_cols=237 Identities=26% Similarity=0.400 Sum_probs=202.9
Q ss_pred CCCccEEEEEEeC-CCCCChhHHHHHHHHHHHHhhCCccEEEEcCCC-------CCCChhhhhhhc-cC--CCCCCCeEE
Q 022941 45 RKGLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSEL-------GEDDPLKQNATW-LF--PSLKVPWYT 113 (289)
Q Consensus 45 ~~~~~~~f~~~gD-~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~-------~~~~~~~~~~~~-~~--~~l~~P~~~ 113 (289)
..+++++|+++|| |.+|..+|..++.+|.++.++.+.||||.+||+ +.+|++++..|+ +| ++|+.|||.
T Consensus 39 ~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~ 118 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYS 118 (336)
T ss_pred CCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhh
Confidence 4689999999999 888889999999999999999999999999995 356888988874 55 779999999
Q ss_pred ecCCCcCCCCceeEe-----------EeCCC-----CCeEEEEEEcCCCccCCCCC------------CCCCCcHHHHHH
Q 022941 114 TKASKEKEVGCFQEQ-----------IRLPH-----GEALDIIGVNTGSLQGKIPT------------ALPSASGDLLLN 165 (289)
Q Consensus 114 v~GNHD~~~~~~~~~-----------~~~p~-----~~~~~~i~lDt~~~~~~~~~------------~~~~~~~~~Ql~ 165 (289)
|.|||| |+|+.+++ |..|. .+.+.+.++|+.++...+.. .|+......+++
T Consensus 119 vlGNHD-yrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~ 197 (336)
T KOG2679|consen 119 VLGNHD-YRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLS 197 (336)
T ss_pred hccCcc-ccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHH
Confidence 999999 99987554 44442 34577888888877643211 133356778999
Q ss_pred HHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCcc-ce--ecCCCeEEEecCCCC
Q 022941 166 WLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCI-KY--SRQDSITYMENPGLI 242 (289)
Q Consensus 166 WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~-~~--~~~~gi~~i~~g~~~ 242 (289)
||+..|+++.++|+||++|||+.+.+.| +++.++.++|+|||++++||+|+|||+|. |+ ...++|+|+++|+|+
T Consensus 198 ~le~~L~~S~a~wkiVvGHh~i~S~~~H---G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 198 WLEVALKASRAKWKIVVGHHPIKSAGHH---GPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGS 274 (336)
T ss_pred HHHHHHHHhhcceEEEecccceehhhcc---CChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcc
Confidence 9999999999999999999999999988 78899999999999999999999999999 77 457899999999999
Q ss_pred CCCCC--------------cccCCcEEEEEEeCcEEEEEEEcCCCcEEEEEEEecCC
Q 022941 243 ESGNG--------------REMVDGFLLHKVSSLEILTYFVTLEGEVVYRTATRERG 285 (289)
Q Consensus 243 ~~~~g--------------~~~~~gf~~v~v~~~~i~~~~~~~~g~~~~~~~i~~~~ 285 (289)
+.|.| .....||+-++++..++++.||+..|++++.+...|+.
T Consensus 275 kaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~vvfyD~~G~~Lhk~~t~kr~ 331 (336)
T KOG2679|consen 275 KAWRGTDHNPEVNPKELKFYYDGQGFMSVEISHSEARVVFYDVSGKVLHKWSTSKRS 331 (336)
T ss_pred cccCCCccCCccChhheEEeeCCCceEEEEEecceeEEEEEeccCceEEEeeccccc
Confidence 98755 24567999999999999999999999999999988775
No 2
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=3.9e-44 Score=323.96 Aligned_cols=237 Identities=19% Similarity=0.233 Sum_probs=195.6
Q ss_pred CCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCC------CCCChhhhhhhc-cC--CC--CCCCeE
Q 022941 44 NRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSEL------GEDDPLKQNATW-LF--PS--LKVPWY 112 (289)
Q Consensus 44 ~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~------~~~~~~~~~~~~-~~--~~--l~~P~~ 112 (289)
...+++++|+++||.+.|...|..++++|.+++++.++||||.+||+ +.+|++|++.|+ +| +. |++|||
T Consensus 21 ~~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy 100 (394)
T PTZ00422 21 YSVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFF 100 (394)
T ss_pred cccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeE
Confidence 34578999999999557889999999999999999999999999996 346789998875 55 34 899999
Q ss_pred EecCCCcCCCCcee----------------------------EeEeCCC-----------------------CCeEEEEE
Q 022941 113 TTKASKEKEVGCFQ----------------------------EQIRLPH-----------------------GEALDIIG 141 (289)
Q Consensus 113 ~v~GNHD~~~~~~~----------------------------~~~~~p~-----------------------~~~~~~i~ 141 (289)
+|+|||| |+|+.. .+|.||+ +..+.|++
T Consensus 101 ~vLGNHD-y~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fif 179 (394)
T PTZ00422 101 TVLGQAD-WDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIF 179 (394)
T ss_pred EeCCccc-ccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEE
Confidence 9999999 765531 3566664 12379999
Q ss_pred EcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhc--CCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEE
Q 022941 142 VNTGSLQGKIPTALPSASGDLLLNWLKSALEAT--NGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYL 219 (289)
Q Consensus 142 lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~--~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl 219 (289)
+||+++...++ ......+|++||+++|+.+ .++|+||++|||+|+.+.+ ++..++++.|.|+|++|+||+||
T Consensus 180 iDT~~l~~~~~---~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~h---g~~~~L~~~L~PLL~ky~VdlYi 253 (394)
T PTZ00422 180 IDTWILSSSFP---YKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSS---KGDSYLSYYLLPLLKDAQVDLYI 253 (394)
T ss_pred EECchhcccCC---ccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCC---CCCHHHHHHHHHHHHHcCcCEEE
Confidence 99998875442 2234578999999999644 3679999999999999986 34456888999999999999999
Q ss_pred eCCCccce-ecCCCeEEEecCCCCCCCCC----------cccCCcEEEEEEeCcEEEEEEEc-CCCcEEEEEEEecCCcc
Q 022941 220 SKHGCIKY-SRQDSITYMENPGLIESGNG----------REMVDGFLLHKVSSLEILTYFVT-LEGEVVYRTATRERGKE 287 (289)
Q Consensus 220 ~GH~H~~~-~~~~gi~~i~~g~~~~~~~g----------~~~~~gf~~v~v~~~~i~~~~~~-~~g~~~~~~~i~~~~~~ 287 (289)
|||+|.++ ...+++.||++|+|+..+.+ ....+||+.++++.+++++++++ .+|++++++++.++.|+
T Consensus 254 sGHDH~lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~~~~~~ 333 (394)
T PTZ00422 254 SGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQPLKKRK 333 (394)
T ss_pred EccccceEEecCCCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeecccchh
Confidence 99999955 55679999999998876421 34579999999999999999997 79999999999998876
No 3
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=3.9e-34 Score=253.42 Aligned_cols=220 Identities=21% Similarity=0.359 Sum_probs=166.0
Q ss_pred EEEEEEeCCCC-CChhHHHHHHHHHHHHhhCCccEEEEcCCCCCC-------Chhhhhhh-ccCCC--CCCCeEEecCCC
Q 022941 50 FYFISVTGGFR-PLEQQTLLLKQMEDVAKSYDARFVINTSELGED-------DPLKQNAT-WLFPS--LKVPWYTTKASK 118 (289)
Q Consensus 50 ~~f~~~gD~~~-g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~-------~~~~~~~~-~~~~~--l~~P~~~v~GNH 118 (289)
++|+++||.+. +...+..+++.|.+++++.+|||||++||+... +..|.+.+ +.+.. +++|+|++||||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 58999999444 467888999999988888899999999997421 23444443 33433 589999999999
Q ss_pred cCCCCceeE-----------eEeCCC------------CCeEEEEEEcCCCccCCCC------CCCCCCcHHHHHHHHHH
Q 022941 119 EKEVGCFQE-----------QIRLPH------------GEALDIIGVNTGSLQGKIP------TALPSASGDLLLNWLKS 169 (289)
Q Consensus 119 D~~~~~~~~-----------~~~~p~------------~~~~~~i~lDt~~~~~~~~------~~~~~~~~~~Ql~WL~~ 169 (289)
| +.+++.+ +|.+|. +++++||+|||......+. ....+.+..+|++||++
T Consensus 81 D-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~ 159 (277)
T cd07378 81 D-YSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEK 159 (277)
T ss_pred c-cCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHH
Confidence 9 5443311 122332 2379999999997653221 11234688999999999
Q ss_pred HHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce-ecC--CCeEEEecCCCCCCCC
Q 022941 170 ALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-SRQ--DSITYMENPGLIESGN 246 (289)
Q Consensus 170 ~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~~--~gi~~i~~g~~~~~~~ 246 (289)
+|++++++|+||++|||+++.+... .....++.|.+++++++|+++||||.|.+. ... .++.|+++|+++..+.
T Consensus 160 ~L~~~~~~~~iv~~H~P~~~~~~~~---~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~ 236 (277)
T cd07378 160 TLAASTADWKIVVGHHPIYSSGEHG---PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARP 236 (277)
T ss_pred HHHhcCCCeEEEEeCccceeCCCCC---CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCC
Confidence 9999888899999999999876542 224567899999999999999999999965 333 4999999998776521
Q ss_pred C--------------cccCCcEEEEEEeCcEEEEEEEcCCC
Q 022941 247 G--------------REMVDGFLLHKVSSLEILTYFVTLEG 273 (289)
Q Consensus 247 g--------------~~~~~gf~~v~v~~~~i~~~~~~~~g 273 (289)
+ .....||.+++|+++++++++++.+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~g 277 (277)
T cd07378 237 SVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDADG 277 (277)
T ss_pred CCCccCcccccccccccCCCCEEEEEEecCEEEEEEECCCC
Confidence 1 23569999999999999999999887
No 4
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=5.6e-34 Score=254.45 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=163.1
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC-----hhhhhhhccCCCC--CCCeEEecCCCc
Q 022941 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD-----PLKQNATWLFPSL--KVPWYTTKASKE 119 (289)
Q Consensus 47 ~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~~~~~~l--~~P~~~v~GNHD 119 (289)
..++||+++||.+.+......+.+.+.+. ..+|||||++||+..++ .+|..+++.+..+ .+|+++++||||
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD 79 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHE 79 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccc
Confidence 46899999999554322233333333221 47899999999986322 3566555555443 789999999999
Q ss_pred CCCCce----eEe----E--------------eCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCC-
Q 022941 120 KEVGCF----QEQ----I--------------RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNG- 176 (289)
Q Consensus 120 ~~~~~~----~~~----~--------------~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~- 176 (289)
+.... ... + ..-+.++++||+|||..... .+....+|++||+++|+++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~------~~~~~~~q~~WL~~~L~~~~~~ 152 (294)
T cd00839 80 -ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFY------GDGPGSPQYDWLEADLAKVDRS 152 (294)
T ss_pred -cccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccc------cCCCCcHHHHHHHHHHHHhccc
Confidence 33221 110 0 01123679999999975331 235678999999999998754
Q ss_pred --CeEEEEeeccccccccccch-hhHHhhHHHHHHHHHHhCCeEEEeCCCcccee--c---------------CCCeEEE
Q 022941 177 --QWCIVVGFHPLVICEEHEEQ-LEAKKIYEPLHHIFMKFGVNTYLSKHGCIKYS--R---------------QDSITYM 236 (289)
Q Consensus 177 --~~~iV~~HhP~~~~~~~~~~-~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~~--~---------------~~gi~~i 236 (289)
+|+||++|||+++.+..... ......++.|.++|++|+|+++||||.|.+.+ . .+|+.||
T Consensus 153 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yi 232 (294)
T cd00839 153 KTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHI 232 (294)
T ss_pred CCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEE
Confidence 68999999999987654211 12345678999999999999999999999762 1 2689999
Q ss_pred ecCCCCCCCC---------C----cccCCcEEEEEEeCc-EEEEEEEc-CCCcEEEEEEEec
Q 022941 237 ENPGLIESGN---------G----REMVDGFLLHKVSSL-EILTYFVT-LEGEVVYRTATRE 283 (289)
Q Consensus 237 ~~g~~~~~~~---------g----~~~~~gf~~v~v~~~-~i~~~~~~-~~g~~~~~~~i~~ 283 (289)
++|+++.... . ....+||.++++.++ .+.+++++ .+|+++|+++|.|
T Consensus 233 v~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v~D~f~i~k 294 (294)
T cd00839 233 VIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVVIDSFWIIK 294 (294)
T ss_pred EECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeEEEEEEEeC
Confidence 9988765411 0 346799999999887 89999997 5799999999986
No 5
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=8.8e-31 Score=230.25 Aligned_cols=219 Identities=17% Similarity=0.181 Sum_probs=150.5
Q ss_pred CccEEEEEEeCCCCCChh------------HHHHHHHHHHHHhhC--CccEEEEcCCCCCCCh-------hhhhhhccCC
Q 022941 47 GLDFYFISVTGGFRPLEQ------------QTLLLKQMEDVAKSY--DARFVINTSELGEDDP-------LKQNATWLFP 105 (289)
Q Consensus 47 ~~~~~f~~~gD~~~g~~~------------~~~~~~~l~~~~~~~--~pdfvv~~GD~~~~~~-------~~~~~~~~~~ 105 (289)
.++++|+++||.|.|... .....+.+.+..++. +||||+++||+..... +++...+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 478999999997766311 112223333333344 8999999999865322 2222234455
Q ss_pred CC--CCCeEEecCCCcCCCCc-------eeEeE----eCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHh
Q 022941 106 SL--KVPWYTTKASKEKEVGC-------FQEQI----RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALE 172 (289)
Q Consensus 106 ~l--~~P~~~v~GNHD~~~~~-------~~~~~----~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~ 172 (289)
.+ ++|+++++||||..... +...| .....++++||+|||..+... .....+..+|++||+++|+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~---~~~~~~~~~ql~WL~~~L~ 158 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDP---SEVPELAQAQDVWLEEQLE 158 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCc---cccccchHHHHHHHHHHHH
Confidence 44 78999999999932111 11111 111236799999999754321 1112577899999999999
Q ss_pred hcC---CCeEEEEeeccccccccccch---hhHHhhHHHHHHHHHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCC
Q 022941 173 ATN---GQWCIVVGFHPLVICEEHEEQ---LEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESG 245 (289)
Q Consensus 173 ~~~---~~~~iV~~HhP~~~~~~~~~~---~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~ 245 (289)
+++ .+++||++|||++........ ......+++|.++|++++|+++||||.|.+. ...+|++++++++++.++
T Consensus 159 ~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~ 238 (262)
T cd07395 159 IAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL 238 (262)
T ss_pred HHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc
Confidence 874 569999999999865432110 1123457889999999999999999999965 556799999888876543
Q ss_pred CCcccCCcEEEEEEeCcEEEEEEEc
Q 022941 246 NGREMVDGFLLHKVSSLEILTYFVT 270 (289)
Q Consensus 246 ~g~~~~~gf~~v~v~~~~i~~~~~~ 270 (289)
....+||++++++++++++++|.
T Consensus 239 --~~~~~g~~~~~v~~~~~~~~~~~ 261 (262)
T cd07395 239 --GNDKSGLRIVKVTEDKIVHEYYS 261 (262)
T ss_pred --CCCCCCcEEEEECCCceeeeeee
Confidence 34679999999999999999885
No 6
>PLN02533 probable purple acid phosphatase
Probab=99.97 E-value=2.9e-30 Score=240.37 Aligned_cols=223 Identities=16% Similarity=0.156 Sum_probs=159.0
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC---hhhhhhhccCCCC--CCCeEEecCCCcCC
Q 022941 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD---PLKQNATWLFPSL--KVPWYTTKASKEKE 121 (289)
Q Consensus 47 ~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~---~~~~~~~~~~~~l--~~P~~~v~GNHD~~ 121 (289)
..+++|+++||.+..... .. .+..+ ++.+|||||++||+...+ ..|..+++.+..+ .+|+++++|||| .
T Consensus 137 ~~~~~f~v~GDlG~~~~~-~~---tl~~i-~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE-~ 210 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEWT-KS---TLEHV-SKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHE-L 210 (427)
T ss_pred CCCeEEEEEEeCCCCccc-HH---HHHHH-HhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCcccc-c
Confidence 468999999994332211 11 22222 346899999999997533 3566655554443 689999999999 4
Q ss_pred CC----------ceeEeEeCCC--------------CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcC--
Q 022941 122 VG----------CFQEQIRLPH--------------GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATN-- 175 (289)
Q Consensus 122 ~~----------~~~~~~~~p~--------------~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~-- 175 (289)
.. .+..+|.+|. .++++||+|||.... ....+|++||+++|++.+
T Consensus 211 ~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~---------~~~~~Q~~WLe~dL~~~~r~ 281 (427)
T PLN02533 211 EKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDF---------EPGSEQYQWLENNLKKIDRK 281 (427)
T ss_pred cccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccc---------cCchHHHHHHHHHHHhhccc
Confidence 31 1345676662 367899999996311 245799999999999764
Q ss_pred -CCeEEEEeeccccccccc-cchhhHHhhHHHHHHHHHHhCCeEEEeCCCcccee---------cCCCeEEEecCCCCCC
Q 022941 176 -GQWCIVVGFHPLVICEEH-EEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKYS---------RQDSITYMENPGLIES 244 (289)
Q Consensus 176 -~~~~iV~~HhP~~~~~~~-~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~~---------~~~gi~~i~~g~~~~~ 244 (289)
.+|+||++|||+|+.+.. ........+++.|.++|.+++||++||||.|.|++ ...|+.||++|+++..
T Consensus 282 ~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 282 TTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred CCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 359999999999987542 11112345678999999999999999999999773 1357889999887543
Q ss_pred -------------CCC-cccCCcEEEEEE-eCcEEEEEEEc-CCC--cEEEEEEEecC
Q 022941 245 -------------GNG-REMVDGFLLHKV-SSLEILTYFVT-LEG--EVVYRTATRER 284 (289)
Q Consensus 245 -------------~~g-~~~~~gf~~v~v-~~~~i~~~~~~-~~g--~~~~~~~i~~~ 284 (289)
|+. +...+||.++++ +...+.++++. .+| .+.|++.|.|-
T Consensus 362 e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~ 419 (427)
T PLN02533 362 EGLATKYIDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSL 419 (427)
T ss_pred cccccccCCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEec
Confidence 111 456899999997 56689999986 444 37899998763
No 7
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=2.8e-29 Score=222.23 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=153.2
Q ss_pred CCCccEEEEEEeCCCCCC---------hhHHHHHHHHHHHHhh-CCccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeE
Q 022941 45 RKGLDFYFISVTGGFRPL---------EQQTLLLKQMEDVAKS-YDARFVINTSELGEDDP--LKQNATWLFPSLKVPWY 112 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~---------~~~~~~~~~l~~~~~~-~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~ 112 (289)
...++++|++++|.|... .....+.+.+..+.+. .+|||||++||+..+.. .|+...+.+..+++|+|
T Consensus 10 ~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~ 89 (275)
T PRK11148 10 AGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCV 89 (275)
T ss_pred CCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEE
Confidence 445789999999977421 1123344445554433 57999999999976432 44444456777899999
Q ss_pred EecCCCcCCCCceeE-----eEe----CCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEe
Q 022941 113 TTKASKEKEVGCFQE-----QIR----LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVG 183 (289)
Q Consensus 113 ~v~GNHD~~~~~~~~-----~~~----~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~ 183 (289)
.+||||| ....+.+ .+. ...++++++|+|||.... .+.+.++.+|++||+++|++.++++++|++
T Consensus 90 ~v~GNHD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g-----~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~ 163 (275)
T PRK11148 90 WLPGNHD-FQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFG-----VPHGELSEYQLEWLERKLADAPERHTLVLL 163 (275)
T ss_pred EeCCCCC-ChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCC-----CcCCEeCHHHHHHHHHHHhhCCCCCeEEEE
Confidence 9999999 4322111 110 112456899999997432 123568899999999999988777888888
Q ss_pred eccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCC-------cccCCcE
Q 022941 184 FHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNG-------REMVDGF 254 (289)
Q Consensus 184 HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g-------~~~~~gf 254 (289)
||||...+............++|.+++++| +|+++||||.|... ...+|+.++++++.+.++.. ....+||
T Consensus 164 hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~ 243 (275)
T PRK11148 164 HHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGW 243 (275)
T ss_pred cCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcE
Confidence 887765543210011122356899999998 89999999999955 56689999999988765311 2456899
Q ss_pred EEEEEeCc-EEEEEEEcCCC
Q 022941 255 LLHKVSSL-EILTYFVTLEG 273 (289)
Q Consensus 255 ~~v~v~~~-~i~~~~~~~~g 273 (289)
+++++.++ ++..+....++
T Consensus 244 ~~~~l~~~g~~~~~~~~~~~ 263 (275)
T PRK11148 244 RELELHADGSLETEVHRLAD 263 (275)
T ss_pred EEEEEcCCCcEEEEEEEcCC
Confidence 99999755 57777766544
No 8
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.96 E-value=6.8e-28 Score=212.44 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=144.7
Q ss_pred EEEEEEeCCCCCCh---------hH-HHHHHHHHHHHhhCCccEEEEcCCCCCCC-----hhhhhhhccCCCCCCCeEEe
Q 022941 50 FYFISVTGGFRPLE---------QQ-TLLLKQMEDVAKSYDARFVINTSELGEDD-----PLKQNATWLFPSLKVPWYTT 114 (289)
Q Consensus 50 ~~f~~~gD~~~g~~---------~~-~~~~~~l~~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~~~~~~l~~P~~~v 114 (289)
|||++++|.|.+.. .. ..+.+++.. +++.+|||||++||+.... ..|+...+.++.+++|++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~-i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v 79 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEE-WNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHV 79 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHH-HHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEe
Confidence 69999999774431 11 223333444 3456799999999986432 23443445567788999999
Q ss_pred cCCCcCCCCceeEe------------EeCCCCCeEEEEEEcCCCccCC-C------------------------CCCCCC
Q 022941 115 KASKEKEVGCFQEQ------------IRLPHGEALDIIGVNTGSLQGK-I------------------------PTALPS 157 (289)
Q Consensus 115 ~GNHD~~~~~~~~~------------~~~p~~~~~~~i~lDt~~~~~~-~------------------------~~~~~~ 157 (289)
||||| ........ +..-..++++||++|+...... . +....+
T Consensus 80 ~GNHD-~~~~~~~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 158 (267)
T cd07396 80 LGNHD-LYNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNG 158 (267)
T ss_pred cCccc-cccccHhhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccC
Confidence 99999 33221100 1111245799999999653210 0 000124
Q ss_pred CcHHHHHHHHHHHHhhcC--CCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecCCCe
Q 022941 158 ASGDLLLNWLKSALEATN--GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQDSI 233 (289)
Q Consensus 158 ~~~~~Ql~WL~~~L~~~~--~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~~gi 233 (289)
.+.++|++||+++|++++ .+++||++|||++..... ........+++.++++++ +|+++||||.|... ...+|+
T Consensus 159 ~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~--~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi 236 (267)
T cd07396 159 GIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS--PHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQRHGI 236 (267)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC--ccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccccCCe
Confidence 678999999999999764 358999999999765531 011122356789999996 89999999999966 667899
Q ss_pred EEEecCCCCCCCCCcccCCcEEEEEEeCcEEEE
Q 022941 234 TYMENPGLIESGNGREMVDGFLLHKVSSLEILT 266 (289)
Q Consensus 234 ~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~ 266 (289)
.|+++|+.+.+ ....+-|.++.+.+|++.+
T Consensus 237 ~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~ 266 (267)
T cd07396 237 HFLTLEGMVET---PPESNAFGVVIVYEDRLIL 266 (267)
T ss_pred eEEEechhhcC---CCCCCceEEEEEeCCceee
Confidence 99999998876 4567889999999988654
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.96 E-value=5e-28 Score=209.81 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=144.4
Q ss_pred EEEEEeCCCCCChh--------HHHHHHHHHHHHhhC--CccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeEEecCCC
Q 022941 51 YFISVTGGFRPLEQ--------QTLLLKQMEDVAKSY--DARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASK 118 (289)
Q Consensus 51 ~f~~~gD~~~g~~~--------~~~~~~~l~~~~~~~--~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~~v~GNH 118 (289)
||++++|.|.+... .....+.+.+..++. +|||||++||+..... .|+...+.+..+++|++.++|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 69999997776421 122233333333343 8999999999875432 44444456677799999999999
Q ss_pred cCCCCceeEeE-----------eCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccc
Q 022941 119 EKEVGCFQEQI-----------RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPL 187 (289)
Q Consensus 119 D~~~~~~~~~~-----------~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~ 187 (289)
| ....+.+.+ ..-..++++|+++|+..... ..+.+.++|++||++.|++..++++|+++|||+
T Consensus 81 D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~-----~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~pp 154 (240)
T cd07402 81 D-DRAAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQ-----HGGELCAAQLDWLEAALAEAPDKPTLVFLHHPP 154 (240)
T ss_pred C-CHHHHHHhhccccccccccceeEecCCEEEEEEeCCCCCC-----cCCEECHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9 432211111 01123579999999975321 223578899999999999988789999999999
Q ss_pred cccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecCCCeEEEecCCCCCCC--CC-----cccCCcEEEEE
Q 022941 188 VICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQDSITYMENPGLIESG--NG-----REMVDGFLLHK 258 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~--~g-----~~~~~gf~~v~ 258 (289)
+...............+++.++++++ +|+++||||.|... ...+|++++++|+.+.++ .. ....+||+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (240)
T cd07402 155 FPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALS 234 (240)
T ss_pred ccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEE
Confidence 87643211111122367899999999 99999999999955 667899999999988763 11 34577999998
Q ss_pred EeCcE
Q 022941 259 VSSLE 263 (289)
Q Consensus 259 v~~~~ 263 (289)
+.+++
T Consensus 235 ~~~~~ 239 (240)
T cd07402 235 LHEDG 239 (240)
T ss_pred EecCC
Confidence 86654
No 10
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.1e-26 Score=209.21 Aligned_cols=229 Identities=15% Similarity=0.141 Sum_probs=164.6
Q ss_pred CCccEEEEEEeC-CCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC----hhhhhhhccCCCC--CCCeEEecCCC
Q 022941 46 KGLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD----PLKQNATWLFPSL--KVPWYTTKASK 118 (289)
Q Consensus 46 ~~~~~~f~~~gD-~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~----~~~~~~~~~~~~l--~~P~~~v~GNH 118 (289)
...+.+|+++|| |..... ..... .+.+..++|+|++.||++.++ ..|.++.+.++.+ .+|++++.|||
T Consensus 144 ~~~~~~~~i~GDlG~~~~~--~s~~~---~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNH 218 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPY--TSTLR---NQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNH 218 (452)
T ss_pred ccCceeEEEEccccccccc--cchHh---HHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccc
Confidence 458999999999 432111 11111 112233799999999986322 3677666666544 78999999999
Q ss_pred cCCCC------ceeEeEeCCC--------------CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCC--
Q 022941 119 EKEVG------CFQEQIRLPH--------------GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNG-- 176 (289)
Q Consensus 119 D~~~~------~~~~~~~~p~--------------~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~-- 176 (289)
|.... .+..+|.+|. .+.++||+|+|.... + -....+|.+||+++|++.+.
T Consensus 219 E~d~~~~~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~-----~--~~~~~~QY~WL~~dL~~v~r~~ 291 (452)
T KOG1378|consen 219 EIDWPPQPCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYY-----N--FLKGTAQYQWLERDLASVDRKK 291 (452)
T ss_pred cccCCCcccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccc-----c--ccccchHHHHHHHHHHHhcccC
Confidence 93222 2356787773 367999999987543 1 14567899999999998754
Q ss_pred -CeEEEEeecccccccc--ccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccceec-------------------CCCeE
Q 022941 177 -QWCIVVGFHPLVICEE--HEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKYSR-------------------QDSIT 234 (289)
Q Consensus 177 -~~~iV~~HhP~~~~~~--~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~~~-------------------~~gi~ 234 (289)
+|+||++|.|+|++.. +...+....++..|.++|-+++||++|+||.|.|++. ..+..
T Consensus 292 tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPv 371 (452)
T KOG1378|consen 292 TPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPI 371 (452)
T ss_pred CCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCE
Confidence 6999999999999887 5444555567789999999999999999999998721 12456
Q ss_pred EEecCCCCCC------------CCC-cccCCcEEEEEEeCc-EEEEEEEc---CCCcEEEEEEEecCCc
Q 022941 235 YMENPGLIES------------GNG-REMVDGFLLHKVSSL-EILTYFVT---LEGEVVYRTATRERGK 286 (289)
Q Consensus 235 ~i~~g~~~~~------------~~g-~~~~~gf~~v~v~~~-~i~~~~~~---~~g~~~~~~~i~~~~~ 286 (289)
||++|+++.. |+. +....||.++++.+. .+.+..++ ..|.+.|++-+.|+-.
T Consensus 372 yI~~G~~G~~e~~~~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~ 440 (452)
T KOG1378|consen 372 YITVGDGGNHEHLDPFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYR 440 (452)
T ss_pred EEEEccCCcccccCcccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccC
Confidence 7887776522 111 678999999999874 36666654 3489999999988643
No 11
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.92 E-value=2.2e-24 Score=184.01 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=121.7
Q ss_pred EEEEEEeCCCCCCh-hHHHH---HHHHHHHHhhCCccEEEEcCCCCCCC---hhhhhhhccCCCC---CCCeEEecCCCc
Q 022941 50 FYFISVTGGFRPLE-QQTLL---LKQMEDVAKSYDARFVINTSELGEDD---PLKQNATWLFPSL---KVPWYTTKASKE 119 (289)
Q Consensus 50 ~~f~~~gD~~~g~~-~~~~~---~~~l~~~~~~~~pdfvv~~GD~~~~~---~~~~~~~~~~~~l---~~P~~~v~GNHD 119 (289)
|||++++|.+.+.. ....+ .+.+.+.+++.+||+|+++||+.... .+|....+.++.+ ++|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 68999999776543 22222 23344445567899999999986533 2555554444443 599999999999
Q ss_pred CCCCceeEeEeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchh--
Q 022941 120 KEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQL-- 197 (289)
Q Consensus 120 ~~~~~~~~~~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~-- 197 (289)
.++.+|+. ...+|++||+++|++++++++||++|||++..+......
T Consensus 81 ------------------~~~~ld~~-------------~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~ 129 (214)
T cd07399 81 ------------------LVLALEFG-------------PRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDY 129 (214)
T ss_pred ------------------chhhCCCC-------------CCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCccccc
Confidence 13445542 347899999999999877899999999998765431110
Q ss_pred --hHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecC-----CC--eEEEecCCCCCCCCCcccCCcEEEEEEeCcE--E
Q 022941 198 --EAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQ-----DS--ITYMENPGLIESGNGREMVDGFLLHKVSSLE--I 264 (289)
Q Consensus 198 --~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~-----~g--i~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~--i 264 (289)
......+.|.++++++ +|+++||||.|.+. ... .| +..+.+.-... ...+.+.|++++++++. |
T Consensus 130 ~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~---~~~g~~~~r~~~f~~~~~~i 206 (214)
T cd07399 130 DSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTLVSVGDAGRTVHQMLADYQGE---PNGGNGFLRLLEFDPDNNKI 206 (214)
T ss_pred ccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEEcccCCCCCEeeEEeecccCC---CCCCcceEEEEEEecCCCEE
Confidence 0112345688999999 79999999999955 211 11 22222211111 12346678999998764 5
Q ss_pred EEEEE
Q 022941 265 LTYFV 269 (289)
Q Consensus 265 ~~~~~ 269 (289)
.++.|
T Consensus 207 ~~~ty 211 (214)
T cd07399 207 DVRTY 211 (214)
T ss_pred EEEeC
Confidence 55544
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=3.5e-22 Score=174.89 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=110.6
Q ss_pred EEEEeCCCCCChhHHH---HHHHHHHHHhhCCccEEEEcCCCCCCC-----------hhhhhhhccC---CCC-CCCeEE
Q 022941 52 FISVTGGFRPLEQQTL---LLKQMEDVAKSYDARFVINTSELGEDD-----------PLKQNATWLF---PSL-KVPWYT 113 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~---~~~~l~~~~~~~~pdfvv~~GD~~~~~-----------~~~~~~~~~~---~~l-~~P~~~ 113 (289)
|++++|.|.|...... ..+.+....++.+||+||++||+.... .+|..+++.+ ..+ ++|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899998776543222 112344455678999999999974211 1343333433 223 589999
Q ss_pred ecCCCcCCCCce--------eEeE---eC-C--------CCCeEEEEEEcCCCccCCC-CCCCCCCcHHHHHHHHHHHHh
Q 022941 114 TKASKEKEVGCF--------QEQI---RL-P--------HGEALDIIGVNTGSLQGKI-PTALPSASGDLLLNWLKSALE 172 (289)
Q Consensus 114 v~GNHD~~~~~~--------~~~~---~~-p--------~~~~~~~i~lDt~~~~~~~-~~~~~~~~~~~Ql~WL~~~L~ 172 (289)
++||||. .+.. ..++ .. + ..++++||+|||....... +....+.+.++|++||+++|+
T Consensus 82 v~GNHD~-~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~ 160 (256)
T cd07401 82 IRGNHDL-FNIPSLDSENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELE 160 (256)
T ss_pred eCCCCCc-CCCCCccchhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHH
Confidence 9999994 3221 1111 11 1 1367999999998643211 000124678899999999999
Q ss_pred hcC-CCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 173 ATN-GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 173 ~~~-~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
+++ .+++||++|||+....... ......+.++|++++|+++||||.|.+.
T Consensus 161 ~~~~~~~~IV~~HhP~~~~~~~~-----~~~~~~~~~ll~~~~v~~vl~GH~H~~~ 211 (256)
T cd07401 161 KSTNSNYTIWFGHYPTSTIISPS-----AKSSSKFKDLLKKYNVTAYLCGHLHPLG 211 (256)
T ss_pred hcccCCeEEEEEcccchhccCCC-----cchhHHHHHHHHhcCCcEEEeCCccCCC
Confidence 764 4689999999996543321 0112238999999999999999999954
No 13
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.83 E-value=3e-19 Score=164.63 Aligned_cols=125 Identities=10% Similarity=0.162 Sum_probs=89.9
Q ss_pred CeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccch----hhHHhhHHHHHHHH
Q 022941 135 EALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQ----LEAKKIYEPLHHIF 210 (289)
Q Consensus 135 ~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~----~~~~~~~~~l~~ll 210 (289)
++++||+|||+..... ..+.+.++|++||+++|++++.+++|||+|||++..+..... +......++|.++|
T Consensus 300 ggvrfIvLDSt~~~G~----~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL 375 (496)
T TIGR03767 300 GGVRGISMDTTNRAGG----DEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLL 375 (496)
T ss_pred CCEEEEEEeCCCcCCC----cCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHH
Confidence 4589999999853211 235788999999999999887789999999999876432100 11122357899999
Q ss_pred HHh-CCeEEEeCCCccce----e------cCCCeEEEecCCCCCCCCCcccCCcEEEEEEeC---cEEEEEEE
Q 022941 211 MKF-GVNTYLSKHGCIKY----S------RQDSITYMENPGLIESGNGREMVDGFLLHKVSS---LEILTYFV 269 (289)
Q Consensus 211 ~~~-~V~~vl~GH~H~~~----~------~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~---~~i~~~~~ 269 (289)
++| +|.++||||.|... . ...|+..|++++. ...++-|++++|.. +.+++...
T Consensus 376 ~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSl------vdfPq~~Ri~Ei~~n~dgt~si~tt 442 (496)
T TIGR03767 376 LEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASH------IDFPQQGRIIELADNQDGTVSIFTT 442 (496)
T ss_pred hcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccc------ccCCCCceEEEEEeCCCCcEEEEEE
Confidence 999 89999999999854 1 1236677877776 45678999999953 34555443
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.82 E-value=1.9e-19 Score=161.03 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhh-CCccEEEEcCCCCCCCh--h---------hhhhhccCCC--CCCCeEEecCCCcCCCCceeE---
Q 022941 65 QTLLLKQMEDVAKS-YDARFVINTSELGEDDP--L---------KQNATWLFPS--LKVPWYTTKASKEKEVGCFQE--- 127 (289)
Q Consensus 65 ~~~~~~~l~~~~~~-~~pdfvv~~GD~~~~~~--~---------~~~~~~~~~~--l~~P~~~v~GNHD~~~~~~~~--- 127 (289)
...+..+++.+.+. .+|||||++||+...+. . ++..++.++. .++|+++++||||.+..+...
T Consensus 52 ~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~ 131 (296)
T cd00842 52 WRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNN 131 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcc
Confidence 34444455554433 48999999999864332 1 1112223322 378999999999943221100
Q ss_pred ----------------------------eEe-CCCCCeEEEEEEcCCCccCCCC-CC-CCCCcHHHHHHHHHHHHhhcCC
Q 022941 128 ----------------------------QIR-LPHGEALDIIGVNTGSLQGKIP-TA-LPSASGDLLLNWLKSALEATNG 176 (289)
Q Consensus 128 ----------------------------~~~-~p~~~~~~~i~lDt~~~~~~~~-~~-~~~~~~~~Ql~WL~~~L~~~~~ 176 (289)
.+. ..-.+++++|+|||..+..... .. .......+|++||+++|+++++
T Consensus 132 ~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~ 211 (296)
T cd00842 132 SPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ 211 (296)
T ss_pred cccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 011 1114679999999987653211 00 1224568999999999998753
Q ss_pred --CeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhC--CeEEEeCCCccce
Q 022941 177 --QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFG--VNTYLSKHGCIKY 227 (289)
Q Consensus 177 --~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~--V~~vl~GH~H~~~ 227 (289)
..++|++|+|+....... .....++|.+++++|+ |.++|+||+|...
T Consensus 212 ~~~~v~I~~HiPp~~~~~~~----~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 212 AGEKVWIIGHIPPGVNSYDT----LENWSERYLQIINRYSDTIAGQFFGHTHRDE 262 (296)
T ss_pred CCCeEEEEeccCCCCccccc----chHHHHHHHHHHHHHHHhhheeeecccccce
Confidence 478999999998765431 1345678999999996 7899999999944
No 15
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.82 E-value=2e-19 Score=156.02 Aligned_cols=190 Identities=11% Similarity=-0.005 Sum_probs=117.3
Q ss_pred EEEEEeCCCCCC--hhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCC-CCCCeEEecCCCcCCCCce--
Q 022941 51 YFISVTGGFRPL--EQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPS-LKVPWYTTKASKEKEVGCF-- 125 (289)
Q Consensus 51 ~f~~~gD~~~g~--~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~-l~~P~~~v~GNHD~~~~~~-- 125 (289)
||++++|.|... .......+++.+.+++.++|+||++||+...........+.+.+ ..+|+|.++||||++.+..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~~ 80 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTYE 80 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCHH
Confidence 578999976432 11223334444444556899999999987543222222232322 4689999999999542321
Q ss_pred --eE---eEeCC------CCCeEEEEEEcCCCccC--------------------CCCCC--CCCCcHHHHHHHHHHHHh
Q 022941 126 --QE---QIRLP------HGEALDIIGVNTGSLQG--------------------KIPTA--LPSASGDLLLNWLKSALE 172 (289)
Q Consensus 126 --~~---~~~~p------~~~~~~~i~lDt~~~~~--------------------~~~~~--~~~~~~~~Ql~WL~~~L~ 172 (289)
.+ ...+. ..++++|++++...-.. ..... ..+.+.++|++||++.|+
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 160 (239)
T TIGR03729 81 EIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLN 160 (239)
T ss_pred HHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHH
Confidence 11 00111 13678999988421110 00001 112467889999999999
Q ss_pred hcCCCeEEEEeecccccccc----c-cchhhH--HhhHHHHHHHHHHhCCeEEEeCCCccce--ecCCCeEEEecCC
Q 022941 173 ATNGQWCIVVGFHPLVICEE----H-EEQLEA--KKIYEPLHHIFMKFGVNTYLSKHGCIKY--SRQDSITYMENPG 240 (289)
Q Consensus 173 ~~~~~~~iV~~HhP~~~~~~----~-~~~~~~--~~~~~~l~~ll~~~~V~~vl~GH~H~~~--~~~~gi~~i~~g~ 240 (289)
++..+++||++||||..... . ...... .....+|.+++++++|+++||||.|... ...++++|+..+-
T Consensus 161 ~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~~~ 237 (239)
T TIGR03729 161 QLDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNRPL 237 (239)
T ss_pred hcCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEecCC
Confidence 88778899999999865321 1 001111 1123678899999999999999999954 3458899987643
No 16
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.82 E-value=1e-19 Score=157.11 Aligned_cols=184 Identities=13% Similarity=0.028 Sum_probs=114.7
Q ss_pred EEEeCCCCCC--------hh--HHHHHHHHHHHHhhC--CccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeEEecCCC
Q 022941 53 ISVTGGFRPL--------EQ--QTLLLKQMEDVAKSY--DARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASK 118 (289)
Q Consensus 53 ~~~gD~~~g~--------~~--~~~~~~~l~~~~~~~--~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~~v~GNH 118 (289)
++++|.|.+. .. .....+.+.+..+.. +||+||++||++.... ......+.+..+..|+|+|+|||
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GNH 81 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGNH 81 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCCc
Confidence 5678855442 11 234444554444444 8999999999974322 22222233455666899999999
Q ss_pred cCCCCce-------eE-eEeCC-C----CCeEEEEEEcCCCccCCCC--------CCCCCCcHHHHHHHHHHHHhhcCC-
Q 022941 119 EKEVGCF-------QE-QIRLP-H----GEALDIIGVNTGSLQGKIP--------TALPSASGDLLLNWLKSALEATNG- 176 (289)
Q Consensus 119 D~~~~~~-------~~-~~~~p-~----~~~~~~i~lDt~~~~~~~~--------~~~~~~~~~~Ql~WL~~~L~~~~~- 176 (289)
|++.... .+ .+.+. + .+++.+++++........+ ....+....+|++||+++|++...
T Consensus 82 D~~~~~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~ 161 (232)
T cd07393 82 DYWWGSASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKR 161 (232)
T ss_pred cccCCCHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9432111 00 01110 1 2357788776322211000 011234567899999999987542
Q ss_pred ---CeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce------ecCCCeEEEecCCCCCCC
Q 022941 177 ---QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY------SRQDSITYMENPGLIESG 245 (289)
Q Consensus 177 ---~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~------~~~~gi~~i~~g~~~~~~ 245 (289)
+++|+++|||++..... .+.+..++++++|+++||||.|... ...+|++|+++++++.+|
T Consensus 162 ~~~~~~i~~~H~p~~~~~~~---------~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~~ 230 (232)
T cd07393 162 EKEKIKIVMLHYPPANENGD---------DSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLNF 230 (232)
T ss_pred CCCCCEEEEECCCCcCCCCC---------HHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcCc
Confidence 36999999999775532 1356788899999999999999843 246899999999987654
No 17
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.82 E-value=9.4e-20 Score=153.78 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=101.2
Q ss_pred ccEEEEEEeCCCCCChh--------HHHHHHHHHHHHhhCCccEEEEcCCCCCCCh-------hhhhhhccCCCCCCCeE
Q 022941 48 LDFYFISVTGGFRPLEQ--------QTLLLKQMEDVAKSYDARFVINTSELGEDDP-------LKQNATWLFPSLKVPWY 112 (289)
Q Consensus 48 ~~~~f~~~gD~~~g~~~--------~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~-------~~~~~~~~~~~l~~P~~ 112 (289)
++++|++++|.|.+... .....+.+.++.+..+||+||++||+..... .+++..+.+...++|++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 46899999997765432 2344455666667789999999999854221 11222223344589999
Q ss_pred EecCCCcCCCCceeEeEeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhc-----CCCeEEEEeeccc
Q 022941 113 TTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEAT-----NGQWCIVVGFHPL 187 (289)
Q Consensus 113 ~v~GNHD~~~~~~~~~~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~-----~~~~~iV~~HhP~ 187 (289)
+++|||| . .+.+.++|++||+++|++. ...+.++|+|||+
T Consensus 81 ~~~GNHD-~----------------------------------~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~ 125 (199)
T cd07383 81 ATFGNHD-G----------------------------------YDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPL 125 (199)
T ss_pred EECccCC-C----------------------------------CCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecCh
Confidence 9999999 0 1245678999999999985 3358999999998
Q ss_pred cccccc--------cchhh---HHhhHHHHHHHH-HHhCCeEEEeCCCccce--ecCCCeEE
Q 022941 188 VICEEH--------EEQLE---AKKIYEPLHHIF-MKFGVNTYLSKHGCIKY--SRQDSITY 235 (289)
Q Consensus 188 ~~~~~~--------~~~~~---~~~~~~~l~~ll-~~~~V~~vl~GH~H~~~--~~~~gi~~ 235 (289)
...... +...+ .......+..++ +..+|+++||||+|.+. ...+++.+
T Consensus 126 ~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l 187 (199)
T cd07383 126 PEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWL 187 (199)
T ss_pred HHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEE
Confidence 765321 11111 011234455555 55589999999999954 44566653
No 18
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.81 E-value=3.2e-19 Score=148.50 Aligned_cols=176 Identities=10% Similarity=0.011 Sum_probs=109.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeEEecCCCcCCCCcee---
Q 022941 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEVGCFQ--- 126 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~--- 126 (289)
++++||.|.+.. .+.+ ...++.+||+||++||++.... .++. ++.+..+++|++.++|||| ......
T Consensus 1 i~~~sD~H~~~~---~~~~---~~~~~~~~D~vv~~GDl~~~~~~~~~~~-~~~l~~~~~p~~~v~GNHD-~~~~~~~~~ 72 (188)
T cd07392 1 ILAISDIHGDVE---KLEA---IILKAEEADAVIVAGDITNFGGKEAAVE-INLLLAIGVPVLAVPGNCD-TPEILGLLT 72 (188)
T ss_pred CEEEEecCCCHH---HHHH---HHhhccCCCEEEECCCccCcCCHHHHHH-HHHHHhcCCCEEEEcCCCC-CHHHHHhhh
Confidence 478999775332 2211 2234568999999999975432 2222 2455667899999999999 432111
Q ss_pred Ee-EeCC----CCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHh
Q 022941 127 EQ-IRLP----HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKK 201 (289)
Q Consensus 127 ~~-~~~p----~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~ 201 (289)
.. ..+. ..++++|+++|+..... ........++|++|+ +.+.....++.|+++|+||+.............
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~l~~~-~~l~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~ 148 (188)
T cd07392 73 SAGLNLHGKVVEVGGYTFVGIGGSNPTP---FNTPIELSEEEIVSD-GRLNNLLAKNLILVTHAPPYGTAVDRVSGGFHV 148 (188)
T ss_pred cCcEecCCCEEEECCEEEEEeCCCCCCC---CCCccccCHHHHHHh-hhhhccCCCCeEEEECCCCcCCcccccCCCCcc
Confidence 10 1111 12458899998753211 111235678899999 666666667899999999976311100000011
Q ss_pred hHHHHHHHHHHhCCeEEEeCCCccce--ecCCCeEEEecC
Q 022941 202 IYEPLHHIFMKFGVNTYLSKHGCIKY--SRQDSITYMENP 239 (289)
Q Consensus 202 ~~~~l~~ll~~~~V~~vl~GH~H~~~--~~~~gi~~i~~g 239 (289)
..+++.+++++++++++||||.|... ...+++.++.+|
T Consensus 149 g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 149 GSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCHHHHHHHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 24678889999999999999999954 445666666543
No 19
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.81 E-value=3.5e-18 Score=151.94 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=132.8
Q ss_pred EEEEEEeCCCCC--ChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC--hhhhhhhccCC--CCCCCeEEecCCCcCCCC
Q 022941 50 FYFISVTGGFRP--LEQQTLLLKQMEDVAKSYDARFVINTSELGEDD--PLKQNATWLFP--SLKVPWYTTKASKEKEVG 123 (289)
Q Consensus 50 ~~f~~~gD~~~g--~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~--~~~~~~~~~~~--~l~~P~~~v~GNHD~~~~ 123 (289)
++|+.++|.|.+ ......++..+.+..+..+||+||++||+++.. .+++...+.+. .+..|++.+|||||....
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 479999998877 444444555554445567899999999998763 24444445556 678899999999994332
Q ss_pred ce---eEeEe--------CCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCC---eEEEEeeccccc
Q 022941 124 CF---QEQIR--------LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQ---WCIVVGFHPLVI 189 (289)
Q Consensus 124 ~~---~~~~~--------~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~---~~iV~~HhP~~~ 189 (289)
.. ...+. ....++++++.+||.... .+.+.+...|++||++.|++.... .++++.|||+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~ 155 (301)
T COG1409 81 NGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPG-----VPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPS 155 (301)
T ss_pred HHHHhhhhhcccCcceEeeccCCceEEEEecCCCCC-----CCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCC
Confidence 21 11111 111256899999998643 234578999999999999987654 455555555554
Q ss_pred cccccchhhHHhhHHHHHHHHHHhC--CeEEEeCCCccc--e-ecCCCeEEEe----cCCCCCCCCCcccCCcEEEEEEe
Q 022941 190 CEEHEEQLEAKKIYEPLHHIFMKFG--VNTYLSKHGCIK--Y-SRQDSITYME----NPGLIESGNGREMVDGFLLHKVS 260 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~ll~~~~--V~~vl~GH~H~~--~-~~~~gi~~i~----~g~~~~~~~g~~~~~gf~~v~v~ 260 (289)
.... ...........+..++..++ |+++|+||.|.. . ....+..... .++.+..+........|..+++.
T Consensus 156 ~~~~-~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
T COG1409 156 PGTG-VDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCSQVFRGSATAFNTLDLD 234 (301)
T ss_pred CCCc-cceeeeecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccceeecCCCccceeeeeec
Confidence 4332 11122233456778888887 999999999986 4 3333333331 22222221113344555666776
Q ss_pred CcEEEEEEE
Q 022941 261 SLEILTYFV 269 (289)
Q Consensus 261 ~~~i~~~~~ 269 (289)
........+
T Consensus 235 ~~~~~~~~~ 243 (301)
T COG1409 235 GPGVRVLVL 243 (301)
T ss_pred CCCeeEEEE
Confidence 555544433
No 20
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.75 E-value=5e-18 Score=137.21 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=98.2
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhh------ccCCCCCCCeEEecCCCcCCCC
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNAT------WLFPSLKVPWYTTKASKEKEVG 123 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~------~~~~~l~~P~~~v~GNHD~~~~ 123 (289)
+||+++||.|.+..........+.......++|+||++||+...+....... .......+|+++++||||.+..
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 6999999977654332112344445566789999999999976543221111 1123458899999999994321
Q ss_pred ce---------eEeE-----eCCCCCeEEEEEEcCCCcc-CCCCCCCCC--CcHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 022941 124 CF---------QEQI-----RLPHGEALDIIGVNTGSLQ-GKIPTALPS--ASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (289)
Q Consensus 124 ~~---------~~~~-----~~p~~~~~~~i~lDt~~~~-~~~~~~~~~--~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP 186 (289)
.. .... ........ .......... ......... .....++.|+...+.....+++||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p 159 (200)
T PF00149_consen 81 NSFYGFYDYQFEDYYGNYNYYYSYFNNK-VIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHP 159 (200)
T ss_dssp HHHHHHHHHHHSSEEECSSEEECTESSE-EEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSS
T ss_pred ccccccccccccccccccccccccCcce-eeecccccccccccccccccccccchhcccccccccccccccceeEEEecC
Confidence 10 0000 00110111 1111111111 000000001 22334455555555555567999999999
Q ss_pred ccccccccch-hhHHhhHHHHHHHHHHhCCeEEEeCCCccc
Q 022941 187 LVICEEHEEQ-LEAKKIYEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 187 ~~~~~~~~~~-~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
++........ ......++.+..++++++|+++|+||+|.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 160 PYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp SSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred CCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9987654110 001234678889999999999999999975
No 21
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.75 E-value=1.8e-17 Score=144.79 Aligned_cols=150 Identities=12% Similarity=-0.024 Sum_probs=96.0
Q ss_pred HHHhhCCccEEEEcCCCCCCC-----hhhhhhh----ccCCCC--CCCeEEecCCCcCCCCc---------eeEeEeCC-
Q 022941 74 DVAKSYDARFVINTSELGEDD-----PLKQNAT----WLFPSL--KVPWYTTKASKEKEVGC---------FQEQIRLP- 132 (289)
Q Consensus 74 ~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~----~~~~~l--~~P~~~v~GNHD~~~~~---------~~~~~~~p- 132 (289)
.+.+..+||+||++||+...+ .+|.+.+ +++..+ .+|++.||||||...++ |.+.|..+
T Consensus 39 ~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~~~ 118 (257)
T cd08163 39 YMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFGPTS 118 (257)
T ss_pred HHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhCCCc
Confidence 344557899999999985432 2454333 345443 47999999999932221 11112111
Q ss_pred ---CCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcC-CCeEEEEeeccccccccc--c---chhhH----
Q 022941 133 ---HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATN-GQWCIVVGFHPLVICEEH--E---EQLEA---- 199 (289)
Q Consensus 133 ---~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~-~~~~iV~~HhP~~~~~~~--~---~~~~~---- 199 (289)
..++++||+|||..+... ....+..+|.+||++.|+... ..++||++|||+|..... + +....
T Consensus 119 ~~~~~~~~~fV~Lds~~l~~~----~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~ 194 (257)
T cd08163 119 RVIDVGNHTFVILDTISLSNK----DDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYG 194 (257)
T ss_pred eEEEECCEEEEEEccccccCC----cccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCCCCC
Confidence 136789999999754321 123567789999999998754 468999999999865321 1 00000
Q ss_pred --H----h-hHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 200 --K----K-IYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 200 --~----~-~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
. . -.+.-..||++.+..+|||||+|.|-
T Consensus 195 ~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C 229 (257)
T cd08163 195 YGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYC 229 (257)
T ss_pred CCccceeecCHHHHHHHHHhhCCcEEEecCCCccc
Confidence 0 0 02344467777799999999999964
No 22
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.73 E-value=2.9e-17 Score=131.32 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=86.6
Q ss_pred EEEEeCCCCCChhHHHH------HHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhhccCCCCC---CCeEEecCCCcC
Q 022941 52 FISVTGGFRPLEQQTLL------LKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLK---VPWYTTKASKEK 120 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~------~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~---~P~~~v~GNHD~ 120 (289)
+++++|.|.+....... .+.+.+..++.+||+|+++||+..... +|+...+.+..+. +|++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD- 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD- 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe-
Confidence 47889977655322111 122444556678999999999865432 3443333344432 59999999999
Q ss_pred CCCceeEeEeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHH
Q 022941 121 EVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAK 200 (289)
Q Consensus 121 ~~~~~~~~~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~ 200 (289)
. ||++|||++......... .
T Consensus 80 ~----------------------------------------------------------iv~~Hhp~~~~~~~~~~~--~ 99 (144)
T cd07400 80 V----------------------------------------------------------IVVLHHPLVPPPGSGRER--L 99 (144)
T ss_pred E----------------------------------------------------------EEEecCCCCCCCcccccc--C
Confidence 2 999999998875431111 1
Q ss_pred hhHHHHHHHHHHhCCeEEEeCCCccce-ec----CCCeEEEecCC
Q 022941 201 KIYEPLHHIFMKFGVNTYLSKHGCIKY-SR----QDSITYMENPG 240 (289)
Q Consensus 201 ~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~----~~gi~~i~~g~ 240 (289)
...+.+.++++++++++++|||.|... .. .+++.++.+|+
T Consensus 100 ~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 100 LDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCCcCeeeccCCCCCEEEEecCC
Confidence 145679999999999999999999955 33 45677777664
No 23
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.73 E-value=2.2e-16 Score=134.74 Aligned_cols=191 Identities=9% Similarity=0.033 Sum_probs=116.7
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh---hhhhhhccCCCCCCCeEEecCCCcCCC-Cc
Q 022941 49 DFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP---LKQNATWLFPSLKVPWYTTKASKEKEV-GC 124 (289)
Q Consensus 49 ~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~---~~~~~~~~~~~l~~P~~~v~GNHD~~~-~~ 124 (289)
.-+++++||.|. +..++ +++.+.+++.++|+||++||+..... .+....+.+..+..|++++|||||... ..
T Consensus 4 ~~kIl~iSDiHg---n~~~l-e~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~ 79 (224)
T cd07388 4 VRYVLATSNPKG---DLEAL-EKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAPLWEY 79 (224)
T ss_pred eeEEEEEEecCC---CHHHH-HHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChHHHHH
Confidence 457999999875 22222 33333445578999999999976442 223333556677899999999999310 11
Q ss_pred eeEe----------EeCCC-----CCeEEEEEEcCCCccCCCCCCCCCCcHHHHH----HHHHH----HHhhcCCCeEEE
Q 022941 125 FQEQ----------IRLPH-----GEALDIIGVNTGSLQGKIPTALPSASGDLLL----NWLKS----ALEATNGQWCIV 181 (289)
Q Consensus 125 ~~~~----------~~~p~-----~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql----~WL~~----~L~~~~~~~~iV 181 (289)
+.+. ..+.. .+.++|++++..... + ...+++|. +||.+ .+.+...++.|+
T Consensus 80 l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~------~-~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VL 152 (224)
T cd07388 80 LREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIAD------E-GEPEEHEALRYPAWVAEYRLKALWELKDYRKVF 152 (224)
T ss_pred HHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCC------C-CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEE
Confidence 1111 11111 244788888855322 1 23455552 56433 444444568999
Q ss_pred Eeecccccccc-ccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccceecCCCeEEEecCCCCCCCCCcccCCcEEEEEEe
Q 022941 182 VGFHPLVICEE-HEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKYSRQDSITYMENPGLIESGNGREMVDGFLLHKVS 260 (289)
Q Consensus 182 ~~HhP~~~~~~-~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~ 260 (289)
++|+||+..+. + .-...+..++++++-.+++|||.|.-+-..+++..+..|.. ....|.+++++
T Consensus 153 v~H~PP~g~g~~h-------~GS~alr~~I~~~~P~l~i~GHih~~~~~~g~t~vvNpg~~--------~~g~~a~i~~~ 217 (224)
T cd07388 153 LFHTPPYHKGLNE-------QGSHEVAHLIKTHNPLVVLVGGKGQKHELLGASWVVVPGDL--------SEGRYALLDLR 217 (224)
T ss_pred EECCCCCCCCCCc-------cCHHHHHHHHHHhCCCEEEEcCCceeEEEeCCEEEECCCcc--------cCCcEEEEEec
Confidence 99999988742 2 11346778999999999999999932223344444433332 22467899987
Q ss_pred CcEEE
Q 022941 261 SLEIL 265 (289)
Q Consensus 261 ~~~i~ 265 (289)
+.+++
T Consensus 218 ~~~v~ 222 (224)
T cd07388 218 ARKLE 222 (224)
T ss_pred Cccee
Confidence 65544
No 24
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.71 E-value=1.6e-16 Score=140.21 Aligned_cols=188 Identities=10% Similarity=0.011 Sum_probs=100.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH-hccCCCceeeecccCCCCCCCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCC
Q 022941 2 AKRPSWVCTLITQLSLCLALYVA-LNLGQPQKSIYQRTNGISSNRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYD 80 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~ 80 (289)
.||.++..+.+..+++.+.+|+. +....++...++ ... ......++|+++++|.|.+...+....+.+.+..++.+
T Consensus 4 ~rr~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~~~~--i~~-~~~~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~ 80 (271)
T PRK11340 4 SRRRLLQAAAATIATSSGFGYMHYWEPGWFELIRHR--LAF-FKDNAAPFKILFLADLHYSRFVPLSLISDAIALGIEQK 80 (271)
T ss_pred cHHHHHHHHHHHHHHHhHhhHHhhhcCceEEEEEEE--ccC-CCCCCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcC
Confidence 46665543333223333444444 233444444442 221 12234679999999988764333333344444456679
Q ss_pred ccEEEEcCCCCCCC--hhhhhhhccCCCC--CCCeEEecCCCcCCCCce-----e-----EeEeCC---------CCCeE
Q 022941 81 ARFVINTSELGEDD--PLKQNATWLFPSL--KVPWYTTKASKEKEVGCF-----Q-----EQIRLP---------HGEAL 137 (289)
Q Consensus 81 pdfvv~~GD~~~~~--~~~~~~~~~~~~l--~~P~~~v~GNHD~~~~~~-----~-----~~~~~p---------~~~~~ 137 (289)
||+|+++||+.+.+ ..+....+.++.+ ..|+|+|+||||++.+.. . ..+.+- ++..+
T Consensus 81 pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~lL~n~~~~i~~~~~~i 160 (271)
T PRK11340 81 PDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGITVLFNQATVIATPNRQF 160 (271)
T ss_pred CCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcEEeeCCeEEEeeCCcEE
Confidence 99999999986521 1222233333333 379999999999543221 0 001111 12334
Q ss_pred EEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeE
Q 022941 138 DIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNT 217 (289)
Q Consensus 138 ~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~ 217 (289)
.++++|.... +. ... .+.++ ++.+.|++.|+|-.- +.+.+.++|+
T Consensus 161 ~i~G~~d~~~------~~--~~~-------~~~~~--~~~~~IlL~H~P~~~------------------~~~~~~~~dL 205 (271)
T PRK11340 161 ELVGTGDLWA------GQ--CKP-------PPASE--ANLPRLVLAHNPDSK------------------EVMRDEPWDL 205 (271)
T ss_pred EEEEecchhc------cC--CCh-------hHhcC--CCCCeEEEEcCCChh------------------HhhccCCCCE
Confidence 4555543110 00 011 11122 245899999999532 1235568999
Q ss_pred EEeCCCcc-ce
Q 022941 218 YLSKHGCI-KY 227 (289)
Q Consensus 218 vl~GH~H~-~~ 227 (289)
+||||+|. |.
T Consensus 206 ~lsGHTHGGQi 216 (271)
T PRK11340 206 MLCGHTHGGQL 216 (271)
T ss_pred EEeccccCCeE
Confidence 99999998 54
No 25
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.71 E-value=7.7e-16 Score=140.91 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=81.4
Q ss_pred EEEEEEcCCCccCC-C-CCCCCCCcHHHHHHHHHHHHhhcC-CCeEEEE-eeccccccccc--cchh----------hHH
Q 022941 137 LDIIGVNTGSLQGK-I-PTALPSASGDLLLNWLKSALEATN-GQWCIVV-GFHPLVICEEH--EEQL----------EAK 200 (289)
Q Consensus 137 ~~~i~lDt~~~~~~-~-~~~~~~~~~~~Ql~WL~~~L~~~~-~~~~iV~-~HhP~~~~~~~--~~~~----------~~~ 200 (289)
+++|+|||...... . +....+.+.++|++||+++|+.++ +++.+|+ +|+|+.+.+.. ..+. ...
T Consensus 305 lrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~L~n~ 384 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPDLQNA 384 (492)
T ss_pred eEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccchhhhcccccccccccccc
Confidence 39999999864421 0 111235788999999999999876 4454555 55555432221 0000 000
Q ss_pred hhHHHHHHHHHHh-CCeEEEeCCCccce-e----c-----CCCeEEEecCCCCCCCCCcccCCcEEEEEEeC---cEEEE
Q 022941 201 KIYEPLHHIFMKF-GVNTYLSKHGCIKY-S----R-----QDSITYMENPGLIESGNGREMVDGFLLHKVSS---LEILT 266 (289)
Q Consensus 201 ~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~----~-----~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~---~~i~~ 266 (289)
....+|.++|++| +|.++||||.|... + . ..|...|.+.+. +.-++-|++++|.. +.+++
T Consensus 385 ~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl------~DfPQq~R~~Ei~~n~d~tvsi 458 (492)
T TIGR03768 385 VSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASL------RDFPQQFRTFEIYLNSDDTVSI 458 (492)
T ss_pred ccHHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhh------ccchhhceEEEEEeCCCCeEEE
Confidence 1124899999999 79999999999743 1 1 235666665554 55688899999843 35766
Q ss_pred EEEcC
Q 022941 267 YFVTL 271 (289)
Q Consensus 267 ~~~~~ 271 (289)
...+.
T Consensus 459 ~tt~v 463 (492)
T TIGR03768 459 EAVNV 463 (492)
T ss_pred EEEec
Confidence 66543
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.70 E-value=5.6e-17 Score=132.85 Aligned_cols=157 Identities=13% Similarity=0.049 Sum_probs=97.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeEEecCCCcCCCCceeEeE
Q 022941 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQI 129 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~ 129 (289)
|+++||.|.+........ .+.....++|+++++||+..... .+.. .........|++.++||||++
T Consensus 1 ~~~iSDlH~~~~~~~~~~---~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~~~~~~~v~~v~GNHD~~-------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADL---LNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLALKGFEPVIYVPGNHEFY-------- 68 (166)
T ss_pred CceEccccccCccccccc---cccCCCCCCCEEEECCCCCCCcchHHHHH-HHHhhcCCccEEEeCCCcceE--------
Confidence 468999776543222221 12234568999999999875432 2211 111223467999999999932
Q ss_pred eCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeecccccccccc-ch-h-hHHhhHHHH
Q 022941 130 RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHE-EQ-L-EAKKIYEPL 206 (289)
Q Consensus 130 ~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~-~~-~-~~~~~~~~l 206 (289)
+.|++. +.+... ....+++++|+.++++ +++||++||||...+... .. . ......+.+
T Consensus 69 -------~~~~G~--~~w~~~------~~~~~~~~~~~~~d~~----~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l 129 (166)
T cd07404 69 -------VRIIGT--TLWSDI------SLFGEAAARMRMNDFR----GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDL 129 (166)
T ss_pred -------EEEEee--eccccc------CccchHHHHhCCCCCC----CCEEEEeCCCCCccccCccccCCCcchhhhhcc
Confidence 444443 222211 1223356666655554 579999999998765321 00 0 112334567
Q ss_pred HHHHHHhCCeEEEeCCCccce-ecCCCeEEEecC
Q 022941 207 HHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENP 239 (289)
Q Consensus 207 ~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g 239 (289)
..++++++|++++|||.|... ...+|+.+++++
T Consensus 130 ~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 130 DDLILADPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred HhHHhhcCCCEEEECCccccceEEECCEEEEecC
Confidence 778888999999999999965 566788888764
No 27
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.61 E-value=3.7e-14 Score=124.20 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=127.2
Q ss_pred CCCccEEEEEEeCCCCCCh----------hH------HHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhh-ccC-
Q 022941 45 RKGLDFYFISVTGGFRPLE----------QQ------TLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNAT-WLF- 104 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~----------~~------~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~-~~~- 104 (289)
..+++|+++.++|-|.|.. .+ .....-|.+..+.++|||||++||+..... ..+... +.+
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAva 128 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVA 128 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhh
Confidence 4689999999999554322 11 112233666777789999999999743211 122221 222
Q ss_pred --CCCCCCeEEecCCCcCCCCce--------------------------e---------EeEe-CC-----CCCeEEEEE
Q 022941 105 --PSLKVPWYTTKASKEKEVGCF--------------------------Q---------EQIR-LP-----HGEALDIIG 141 (289)
Q Consensus 105 --~~l~~P~~~v~GNHD~~~~~~--------------------------~---------~~~~-~p-----~~~~~~~i~ 141 (289)
-+.+|||.++.|||| ..+.+ . .+.. .+ ...-..+++
T Consensus 129 P~I~~~IPwA~~lGNHD-des~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyf 207 (379)
T KOG1432|consen 129 PAIDRKIPWAAVLGNHD-DESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYF 207 (379)
T ss_pred hHhhcCCCeEEEecccc-cccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEE
Confidence 345999999999999 32211 0 0000 00 112345678
Q ss_pred EcCCCccCCCC-CCCCCCcHHHHHHHHHHHHhh----c-C-CC-eEEEEeeccccccccc-------cch---hhHHhhH
Q 022941 142 VNTGSLQGKIP-TALPSASGDLLLNWLKSALEA----T-N-GQ-WCIVVGFHPLVICEEH-------EEQ---LEAKKIY 203 (289)
Q Consensus 142 lDt~~~~~~~~-~~~~~~~~~~Ql~WL~~~L~~----~-~-~~-~~iV~~HhP~~~~~~~-------~~~---~~~~~~~ 203 (289)
||+......-+ ....+.+.+.|+.||+.+-.+ . + .+ +-+++.|.|+--...- +.. .......
T Consensus 208 ld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~ 287 (379)
T KOG1432|consen 208 LDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHN 287 (379)
T ss_pred EecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccc
Confidence 88875543210 011356788999999987722 1 1 23 7899999997332110 000 0011123
Q ss_pred HHHHHHHH-HhCCeEEEeCCCccce--ecCCC-eEEEecCCCCCCCCC-cccCCcEEEEEEeCcEEEEEE
Q 022941 204 EPLHHIFM-KFGVNTYLSKHGCIKY--SRQDS-ITYMENPGLIESGNG-REMVDGFLLHKVSSLEILTYF 268 (289)
Q Consensus 204 ~~l~~ll~-~~~V~~vl~GH~H~~~--~~~~g-i~~i~~g~~~~~~~g-~~~~~gf~~v~v~~~~i~~~~ 268 (289)
..++..|. .-+|++|+|||+|... .+..+ +.+.-.|+++.-.+| ..-...-++++++...-.++.
T Consensus 288 sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~~IkT 357 (379)
T KOG1432|consen 288 SGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKDRIKT 357 (379)
T ss_pred cHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccccccce
Confidence 45677777 6699999999999955 55555 555544554443222 122444567888765544443
No 28
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.59 E-value=3.2e-15 Score=120.61 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=93.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEeE
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQI 129 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~ 129 (289)
.|++++||.|.+.. .+.+.++.+ .+||+|+++||+... ++.++.++.. |+++++|||| ... +....
T Consensus 1 Mki~~~sD~H~~~~---~~~~~~~~~---~~~d~vi~~GDi~~~----~~~~~~~~~~--~~~~v~GNHD-~~~-~~~~~ 66 (156)
T PF12850_consen 1 MKIAVISDLHGNLD---ALEAVLEYI---NEPDFVIILGDIFDP----EEVLELLRDI--PVYVVRGNHD-NWA-FPNEN 66 (156)
T ss_dssp EEEEEEE--TTTHH---HHHHHHHHH---TTESEEEEES-SCSH----HHHHHHHHHH--EEEEE--CCH-STH-HHSEE
T ss_pred CEEEEEeCCCCChh---HHHHHHHHh---cCCCEEEECCCchhH----HHHHHHHhcC--CEEEEeCCcc-ccc-chhhh
Confidence 48999999887443 233333333 369999999998652 2333433333 9999999999 221 11100
Q ss_pred eCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHH
Q 022941 130 RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHI 209 (289)
Q Consensus 130 ~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~l 209 (289)
... . +.+.+...-..+.|+++|.+++..... .+.+..+
T Consensus 67 ~~~----~-----------------------------~~~~~~~~~~~~~i~~~H~~~~~~~~~---------~~~~~~~ 104 (156)
T PF12850_consen 67 DEE----Y-----------------------------LLDALRLTIDGFKILLSHGHPYDVQWD---------PAELREI 104 (156)
T ss_dssp CTC----S-----------------------------SHSEEEEEETTEEEEEESSTSSSSTTT---------HHHHHHH
T ss_pred hcc----c-----------------------------cccceeeeecCCeEEEECCCCcccccC---------hhhhhhh
Confidence 000 0 000111111357899999988764421 2245577
Q ss_pred HHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCc
Q 022941 210 FMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSL 262 (289)
Q Consensus 210 l~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~ 262 (289)
+...+++++++||.|... ...+++.++..|+.+....+ ...+|.+++++++
T Consensus 105 ~~~~~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~~~--~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 105 LSRENVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPRHG--DQSGYAILDIEDK 156 (156)
T ss_dssp HHHTTSSEEEESSSSSEEEEEETTEEEEEE-GSSS-SSS--SSEEEEEEEETTT
T ss_pred hcccCCCEEEcCCcccceEEEECCEEEEECCcCCCCCCC--CCCEEEEEEEecC
Confidence 888899999999999965 56788999999887665422 3899999999753
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.58 E-value=1.3e-14 Score=123.97 Aligned_cols=176 Identities=10% Similarity=0.013 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCChh-----------HHHHHHHHHHHHhhCCccEEEEcCCCCCCC---h-hhhhhhccCCCC---CCCeE
Q 022941 51 YFISVTGGFRPLEQ-----------QTLLLKQMEDVAKSYDARFVINTSELGEDD---P-LKQNATWLFPSL---KVPWY 112 (289)
Q Consensus 51 ~f~~~gD~~~g~~~-----------~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~---~-~~~~~~~~~~~l---~~P~~ 112 (289)
||++++|.|.|... +....+.+.+.+.+.+||+||++||+.... . .+....+.+..+ ++|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 58999997766421 223344444555667999999999985422 1 222233344444 78999
Q ss_pred EecCCCcCCCCce--eE-----eEe--------------CCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHH
Q 022941 113 TTKASKEKEVGCF--QE-----QIR--------------LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSAL 171 (289)
Q Consensus 113 ~v~GNHD~~~~~~--~~-----~~~--------------~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L 171 (289)
+++||||.+.... .. .+. .....++.+++++... ......+++++++.+
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~----------~~~~~~~~~~~~~~~ 150 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLR----------RSRLRDLLADAELRP 150 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCC----------HHHHHHHHHHHHHHh
Confidence 9999999432211 00 000 0012334444443321 122234445555554
Q ss_pred hhc-CCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 172 EAT-NGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 172 ~~~-~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
.+. +..+.|+++|+|+.......... .......+...++|++++||.|... ....+...+-+|+.
T Consensus 151 ~~~~~~~~~Il~~H~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~ 217 (223)
T cd00840 151 RPLDPDDFNILLLHGGVAGAGPSDSER-----APFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSP 217 (223)
T ss_pred hccCCCCcEEEEEeeeeecCCCCcccc-----cccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCc
Confidence 433 45689999999986554321000 1123344667789999999999955 33344444444543
No 30
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.53 E-value=1.7e-12 Score=107.49 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=106.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEeEe
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIR 130 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~~ 130 (289)
+++++||+|.+... ..+.+.+.++.++.++|.|+++||+... +..+.+..++.|++.|.||||... .
T Consensus 1 ~i~viSDtHl~~~~-~~~~~~~~~~~~~~~~d~iih~GDi~~~-----~~~~~l~~~~~~~~~V~GN~D~~~-------~ 67 (178)
T cd07394 1 LVLVIGDLHIPHRA-SDLPAKFKKLLVPGKIQHVLCTGNLCSK-----ETYDYLKTIAPDVHIVRGDFDENL-------N 67 (178)
T ss_pred CEEEEEecCCCCCc-hhhHHHHHHHhccCCCCEEEECCCCCCH-----HHHHHHHhhCCceEEEECCCCccc-------c
Confidence 46899999865522 2233344445554679999999998542 122333344458999999999211 1
Q ss_pred CCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHH
Q 022941 131 LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIF 210 (289)
Q Consensus 131 ~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll 210 (289)
+|.. ..+ .-...+|.+.|--.+..... .+.+..++
T Consensus 68 lp~~---~~~---------------------------------~~~g~~i~l~HG~~~~~~~~---------~~~~~~~~ 102 (178)
T cd07394 68 YPET---KVI---------------------------------TVGQFKIGLIHGHQVVPWGD---------PDSLAALQ 102 (178)
T ss_pred CCCc---EEE---------------------------------EECCEEEEEEECCcCCCCCC---------HHHHHHHH
Confidence 1211 000 01245788888533221110 12344456
Q ss_pred HHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCC--cccCCcEEEEEEeCcEEEEEEEcCCCcEEE
Q 022941 211 MKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNG--REMVDGFLLHKVSSLEILTYFVTLEGEVVY 277 (289)
Q Consensus 211 ~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g--~~~~~gf~~v~v~~~~i~~~~~~~~g~~~~ 277 (289)
++.++|++++||+|.+. ...+++.++..|+.+.+..+ ....+.|.+++++++.+.++.++..+..+.
T Consensus 103 ~~~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~l~~~~~~ 172 (178)
T cd07394 103 RQLDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVK 172 (178)
T ss_pred HhcCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEEEECCcEE
Confidence 67789999999999966 56678888888887654221 233579999999999999999986444433
No 31
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.49 E-value=2.5e-13 Score=116.32 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=83.8
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhh-hhhccCCCC--CCCeEEecCCCcCCCCce
Q 022941 49 DFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQ-NATWLFPSL--KVPWYTTKASKEKEVGCF 125 (289)
Q Consensus 49 ~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~-~~~~~~~~l--~~P~~~v~GNHD~~~~~~ 125 (289)
++++++++|.|.+........+.+.+.+++.+||+|+++||+........ ...+.+..+ .+|++.++||||++.+..
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~ 80 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDE 80 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCch
Confidence 47999999987765433223334444445678999999999865433221 223334433 589999999999544322
Q ss_pred eE---e-----EeCCC---------CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcC-CCeEEEEeeccc
Q 022941 126 QE---Q-----IRLPH---------GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATN-GQWCIVVGFHPL 187 (289)
Q Consensus 126 ~~---~-----~~~p~---------~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~-~~~~iV~~HhP~ 187 (289)
.. . +.... +..+.+++++. ......++.+.++..+ +++.|++.|.|.
T Consensus 81 ~~~~~~l~~~~v~~L~~~~~~~~~~~~~i~i~G~~~---------------~~~~~~~~~~~~~~~~~~~~~I~l~H~P~ 145 (223)
T cd07385 81 ENWIEALESAGITVLRNESVEISVGGATIGIAGVDD---------------GLGRRPDLEKALKGLDEDDPNILLAHQPD 145 (223)
T ss_pred HHHHHHHHHcCCEEeecCcEEeccCCeEEEEEeccC---------------ccccCCCHHHHHhCCCCCCCEEEEecCCC
Confidence 11 0 11000 11122222111 0112245566666543 468999999975
Q ss_pred cccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccc
Q 022941 188 VICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
... .+.+.++|+++|||+|..
T Consensus 146 ~~~------------------~~~~~~~dl~l~GHtHgg 166 (223)
T cd07385 146 TAE------------------EAAAWGVDLQLSGHTHGG 166 (223)
T ss_pred hhH------------------HhcccCccEEEeccCCCC
Confidence 321 125568999999999993
No 32
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.48 E-value=3.3e-13 Score=106.71 Aligned_cols=125 Identities=13% Similarity=0.062 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhhccCCCCCCC-eEEecCCCcCCCCceeE
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVP-WYTTKASKEKEVGCFQE 127 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P-~~~v~GNHD~~~~~~~~ 127 (289)
+++++||.|.... ..+..++|+++++||+..... +++...+.+..++.| ++.|+||||.+..
T Consensus 1 ~i~~isD~H~~~~-----------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~---- 65 (135)
T cd07379 1 RFVCISDTHSRHR-----------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD---- 65 (135)
T ss_pred CEEEEeCCCCCCC-----------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC----
Confidence 4789999775432 113468999999999865332 233333445555555 5789999992110
Q ss_pred eEeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHH
Q 022941 128 QIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLH 207 (289)
Q Consensus 128 ~~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~ 207 (289)
.+++.|++.|.|++....... .....-.+.+.
T Consensus 66 -----------------------------------------------~~~~~ilv~H~~p~~~~~~~~-~~~~~g~~~~~ 97 (135)
T cd07379 66 -----------------------------------------------PEDTDILVTHGPPYGHLDLVS-SGQRVGCEELL 97 (135)
T ss_pred -----------------------------------------------CCCCEEEEECCCCCcCccccc-cCcccCCHHHH
Confidence 235678999999977543210 00111124567
Q ss_pred HHHHHhCCeEEEeCCCccce--e----cCCCeEEEec
Q 022941 208 HIFMKFGVNTYLSKHGCIKY--S----RQDSITYMEN 238 (289)
Q Consensus 208 ~ll~~~~V~~vl~GH~H~~~--~----~~~gi~~i~~ 238 (289)
+++++++++++++||.|.+. . ..+++.++.+
T Consensus 98 ~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~ 134 (135)
T cd07379 98 NRVQRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNA 134 (135)
T ss_pred HHHHHHCCcEEEEcCcCCcCceeEecccCCCEEEEeC
Confidence 77889999999999999965 3 4567777754
No 33
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.44 E-value=8.9e-13 Score=106.58 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEeEe
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIR 130 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~~ 130 (289)
|++++||.|... ..+.+.+.. .+ ++|.|+++||+......-. .....|++.|+||||. ...+ -.
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~-~~--~~d~ii~~GD~~~~~~~~~------~~~~~~~~~V~GNhD~-~~~~---~~ 64 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALEL-FG--DVDLIIHAGDVLYPGPLNE------LELKAPVIAVRGNCDG-EVDF---PI 64 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHH-hc--CCCEEEECCccccccccch------hhcCCcEEEEeCCCCC-cCCc---cc
Confidence 478999987533 222222222 22 2999999999865332111 1335789999999992 2100 00
Q ss_pred CCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHH
Q 022941 131 LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIF 210 (289)
Q Consensus 131 ~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll 210 (289)
+|. .. .+ .-+..+|+++|.++...... .. . ..++
T Consensus 65 ~p~---~~-------------------------------~~--~~~g~~i~v~Hg~~~~~~~~------~~---~-~~~~ 98 (155)
T cd00841 65 LPE---EA-------------------------------VL--EIGGKRIFLTHGHLYGVKNG------LD---R-LYLA 98 (155)
T ss_pred CCc---eE-------------------------------EE--EECCEEEEEECCcccccccc------hh---h-hhhh
Confidence 010 00 00 01246799999987654321 00 1 3456
Q ss_pred HHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEE
Q 022941 211 MKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYF 268 (289)
Q Consensus 211 ~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~ 268 (289)
++.++|++++||+|.+. ...+++.++..|+.+.+.. ....+|.++++++ ++++++
T Consensus 99 ~~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~--~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 99 KEGGADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPRG--GGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred hhcCCCEEEECcccCCccEEECCEEEEeCCCccCcCC--CCCCeEEEEEecC-CCcEEE
Confidence 77799999999999966 5667888888888765421 3568999999987 666654
No 34
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.43 E-value=2e-12 Score=107.77 Aligned_cols=199 Identities=9% Similarity=0.038 Sum_probs=102.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC---hhhh--------------------------hhh
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD---PLKQ--------------------------NAT 101 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~---~~~~--------------------------~~~ 101 (289)
+++.++|-+. +....+.+...+....||.|+++||+.... .+|. .++
T Consensus 7 kilA~s~~~g----~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff 82 (255)
T PF14582_consen 7 KILAISNFRG----DFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFF 82 (255)
T ss_dssp EEEEEE--TT-----HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcch----HHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence 5677888332 233444454555566999999999984322 2455 334
Q ss_pred ccCCCCCCCeEEecCCCcCCCCce-----eEeEeCC-----------CCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHH
Q 022941 102 WLFPSLKVPWYTTKASKEKEVGCF-----QEQIRLP-----------HGEALDIIGVNTGSLQGKIPTALPSASGDLLLN 165 (289)
Q Consensus 102 ~~~~~l~~P~~~v~GNHD~~~~~~-----~~~~~~p-----------~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~ 165 (289)
+.+..+.+|.+++|||||-+...+ ....-.| ..+.+-++++-...........-.-........
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weae 162 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWEAE 162 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHH
T ss_pred HHHHhcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccccccccchHHHHH
Confidence 456778999999999999321111 0000011 122344444322211110000001122233445
Q ss_pred HHHHHHhhcCCCeEEEEeeccc-cccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce-e-cCCCeEEEecCCCC
Q 022941 166 WLKSALEATNGQWCIVVGFHPL-VICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-S-RQDSITYMENPGLI 242 (289)
Q Consensus 166 WL~~~L~~~~~~~~iV~~HhP~-~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~-~~~gi~~i~~g~~~ 242 (289)
|..+.|...+...+|+.+|.|| ...+.. ..-.+.+..++++|+-++++|||.|... . ..+.+..+..|+.
T Consensus 163 y~lk~l~elk~~r~IlLfhtpPd~~kg~~------h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL- 235 (255)
T PF14582_consen 163 YSLKFLRELKDYRKILLFHTPPDLHKGLI------HVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSL- 235 (255)
T ss_dssp HHHGGGGGCTSSEEEEEESS-BTBCTCTB------TTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BG-
T ss_pred HHHHHHHhcccccEEEEEecCCccCCCcc------cccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccc-
Confidence 5556777776668899999999 333311 1112467789999999999999999865 2 3334444444444
Q ss_pred CCCCCcccCCcEEEEEEeCcEEEEE
Q 022941 243 ESGNGREMVDGFLLHKVSSLEILTY 267 (289)
Q Consensus 243 ~~~~g~~~~~gf~~v~v~~~~i~~~ 267 (289)
...+|+++++.++++...
T Consensus 236 -------~~G~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 236 -------AEGDYAVIDLEQDKVEFG 253 (255)
T ss_dssp -------GGTEEEEEETTTTEEEEE
T ss_pred -------ccCceeEEEecccccccC
Confidence 237999999999988764
No 35
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.42 E-value=2.9e-12 Score=104.11 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=94.1
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhC-CccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEe
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSY-DARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQ 128 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~-~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~ 128 (289)
.|++++||.|....... .+.+..+.. ++|.|+++||+... +..+.+..+..|++.|+||||....
T Consensus 1 m~i~viSD~H~~~~~~~----~~~~~~~~~~~~d~ii~~GD~~~~-----~~~~~l~~~~~~~~~V~GN~D~~~~----- 66 (158)
T TIGR00040 1 MKILVISDTHGPLRATE----LPVELFNLESNVDLVIHAGDLTSP-----FVLKEFEDLAAKVIAVRGNNDGERD----- 66 (158)
T ss_pred CEEEEEecccCCcchhH----hHHHHHhhccCCCEEEEcCCCCCH-----HHHHHHHHhCCceEEEccCCCchhh-----
Confidence 37899999875332222 222333344 89999999998621 1223334456689999999992100
Q ss_pred EeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHH
Q 022941 129 IRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHH 208 (289)
Q Consensus 129 ~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ 208 (289)
.+|.. +.-.-....|++.|-.++..... . ..+..
T Consensus 67 -~~~~~------------------------------------~~~~~~g~~i~l~Hg~~~~~~~~------~---~~l~~ 100 (158)
T TIGR00040 67 -ELPEE------------------------------------EIFEAEGIDFGLVHGDLVYPRGD------L---LVLEY 100 (158)
T ss_pred -hCCcc------------------------------------eEEEECCEEEEEEeCcccccCCC------H---HHHHH
Confidence 00100 00011246789999664322111 0 12334
Q ss_pred HHHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEE
Q 022941 209 IFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEIL 265 (289)
Q Consensus 209 ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~ 265 (289)
+.+..+++++++||+|... ...+++.++..|+.+.++.+ ..++|.+++++++.++
T Consensus 101 ~~~~~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~~~--~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 101 LAKELGVDVLIFGHTHIPVAEELRGILLINPGSLTGPRNG--NTPSYAILDVDKDKVT 156 (158)
T ss_pred HHhccCCCEEEECCCCCCccEEECCEEEEECCccccccCC--CCCeEEEEEecCCeEE
Confidence 4456689999999999965 55678888887776654321 2679999999887765
No 36
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.38 E-value=5.3e-12 Score=97.58 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=80.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhh--ccCCCCCCCeEEecCCCcCCCCceeEe
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNAT--WLFPSLKVPWYTTKASKEKEVGCFQEQ 128 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~--~~~~~l~~P~~~v~GNHD~~~~~~~~~ 128 (289)
+++||.+.+......... .....+.++|+||++||+..... .+.... ........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~--~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD--------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLE--AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD--------- 69 (131)
T ss_pred CeeecccCCccchHHHHH--HHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce---------
Confidence 368996665433222111 22344578999999999854332 121111 223556899999999999
Q ss_pred EeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHH
Q 022941 129 IRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHH 208 (289)
Q Consensus 129 ~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ 208 (289)
|+++|.|++.......... ......+..
T Consensus 70 ---------------------------------------------------i~~~H~~~~~~~~~~~~~~-~~~~~~~~~ 97 (131)
T cd00838 70 ---------------------------------------------------ILLTHGPPYDPLDELSPDE-DPGSEALLE 97 (131)
T ss_pred ---------------------------------------------------EEEeccCCCCCchhhcccc-hhhHHHHHH
Confidence 9999999987765411111 113567788
Q ss_pred HHHHhCCeEEEeCCCccce-ec--CCCeEEEec
Q 022941 209 IFMKFGVNTYLSKHGCIKY-SR--QDSITYMEN 238 (289)
Q Consensus 209 ll~~~~V~~vl~GH~H~~~-~~--~~gi~~i~~ 238 (289)
++.+.+++++++||.|.+. .. ..++.+++.
T Consensus 98 ~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~v~~ 130 (131)
T cd00838 98 LLEKYGVDLVLSGHTHVYERREPDGGGTLYINP 130 (131)
T ss_pred HHHHhCCCEEEeCCeeccccccCCCCceEEecC
Confidence 8899999999999999966 33 456666654
No 37
>PRK09453 phosphodiesterase; Provisional
Probab=99.37 E-value=3.7e-11 Score=99.87 Aligned_cols=170 Identities=11% Similarity=0.095 Sum_probs=97.1
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hh------hhhhccCCCCCCCeEEecCCCcCC
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LK------QNATWLFPSLKVPWYTTKASKEKE 121 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~------~~~~~~~~~l~~P~~~v~GNHD~~ 121 (289)
.|++++||.|... .++ +.+.+..++.++|.++++||+....+ .| .+..+.+..++.|++.|+||||.+
T Consensus 1 mri~viSD~Hg~~---~~~-~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSL---PAT-EKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCH---HHH-HHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcch
Confidence 3789999988432 222 23333345578999999999854221 11 222334455667999999999932
Q ss_pred CCceeEeEeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHh
Q 022941 122 VGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKK 201 (289)
Q Consensus 122 ~~~~~~~~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~ 201 (289)
...... .+|. . . ...|+ .. +..+|+++|..++... .
T Consensus 77 ~~~~~~--~~~~--------------~------~-------~~~~~-----~l-~g~~i~l~HG~~~~~~---------~ 112 (182)
T PRK09453 77 VDQMLL--HFPI--------------M------A-------PYQQV-----LL-EGKRLFLTHGHLYGPE---------N 112 (182)
T ss_pred hhhhcc--CCcc--------------c------C-------ceEEE-----EE-CCeEEEEECCCCCChh---------h
Confidence 211000 0000 0 0 00000 01 2356888897554311 0
Q ss_pred hHHHHHHHHHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEEEcC-CCcEEEEE
Q 022941 202 IYEPLHHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYFVTL-EGEVVYRT 279 (289)
Q Consensus 202 ~~~~l~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~~~-~g~~~~~~ 279 (289)
+.+..++|++++||.|.+. ...+++.++..|+.+.+. + .....|.++++. .+ +.++. .|+++-+.
T Consensus 113 -------~~~~~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~p~-~-~~~~s~~il~~~--~~--~~~~~~~~~~~~~~ 179 (182)
T PRK09453 113 -------LPALHDGDVLVYGHTHIPVAEKQGGIILFNPGSVSLPK-G-GYPASYGILDDN--VL--SVIDLEGGEVIAQV 179 (182)
T ss_pred -------cccccCCCEEEECCCCCCcceEECCEEEEECCCccccC-C-CCCCeEEEEECC--cE--EEEECCCCeEEEee
Confidence 0123468999999999965 556789999888866542 1 345688888873 44 44443 34566554
Q ss_pred E
Q 022941 280 A 280 (289)
Q Consensus 280 ~ 280 (289)
.
T Consensus 180 ~ 180 (182)
T PRK09453 180 A 180 (182)
T ss_pred c
Confidence 4
No 38
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.33 E-value=2.2e-10 Score=95.84 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=116.7
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCC--CCCh--hhhhh--hccCCCCCCCeEEecCCCcCCC
Q 022941 49 DFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG--EDDP--LKQNA--TWLFPSLKVPWYTTKASKEKEV 122 (289)
Q Consensus 49 ~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~--~~~~--~~~~~--~~~~~~l~~P~~~v~GNHD~~~ 122 (289)
.++++.++|-|... ...+++..++...++|+++++||++ .-++ .-.+. .+...+..+|++++|||=| ..
T Consensus 3 ~mkil~vtDlHg~~----~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD-~~ 77 (226)
T COG2129 3 KMKILAVTDLHGSE----DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCD-PP 77 (226)
T ss_pred cceEEEEeccccch----HHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCC-hH
Confidence 57899999966422 2233344445556899999999987 3222 11111 2334567899999999988 32
Q ss_pred Cce---e-EeEeC----CCCCeEEEEEEcCCCccCCCCCCCCCCcHHHH-HHHHHHHHhhcCCCeEEEEeeccccccccc
Q 022941 123 GCF---Q-EQIRL----PHGEALDIIGVNTGSLQGKIPTALPSASGDLL-LNWLKSALEATNGQWCIVVGFHPLVICEEH 193 (289)
Q Consensus 123 ~~~---~-~~~~~----p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Q-l~WL~~~L~~~~~~~~iV~~HhP~~~~~~~ 193 (289)
.-. . +-..+ ..-+++.|+++-...... -......++++ +.-|++-+....+.-.|+.+|.||+.....
T Consensus 78 ~v~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp---~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d 154 (226)
T COG2129 78 EVIDVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTP---FNTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLD 154 (226)
T ss_pred HHHHHHHhcccccccceEEecCcEEEEecccCCCC---CCCccccCHHHHHHHHHHHHhcccCcceEEEecCCCCCcccc
Confidence 110 0 00011 112334455422111110 01112344443 344555555443333399999999887543
Q ss_pred cchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce-ec-CCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEEE
Q 022941 194 EEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-SR-QDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYFV 269 (289)
Q Consensus 194 ~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~-~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~ 269 (289)
...+...--.+.+..++++.+..+.+|||.|-.. .+ .+.+..+..|.. ....|+++++.+..+..+.+
T Consensus 155 ~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~--------~~g~yA~i~l~~~~Vk~~~~ 224 (226)
T COG2129 155 TPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPL--------GEGRYALIELEKEVVKLEQF 224 (226)
T ss_pred CCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCc--------cCceEEEEEecCcEEEEEEe
Confidence 1011012224678899999999999999999855 33 344444444432 34788999999887766543
No 39
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.30 E-value=1.6e-11 Score=99.53 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=72.2
Q ss_pred HHHHHHhhCCccEEEEcCCCCCCC-----hhhhhhhc----cCCC-CCCCeEEecCCCcCCCCceeEeEeCCCCCeEEEE
Q 022941 71 QMEDVAKSYDARFVINTSELGEDD-----PLKQNATW----LFPS-LKVPWYTTKASKEKEVGCFQEQIRLPHGEALDII 140 (289)
Q Consensus 71 ~l~~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~~----~~~~-l~~P~~~v~GNHD~~~~~~~~~~~~p~~~~~~~i 140 (289)
.+.+..+..+||+|+++||+.... ..|..... .+.. ..+|++.++|||| ....
T Consensus 29 ~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD-~~~~---------------- 91 (156)
T cd08165 29 SFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHD-IGFH---------------- 91 (156)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCC-cCCC----------------
Confidence 455556678999999999985421 23433222 2322 3689999999999 2110
Q ss_pred EEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEe
Q 022941 141 GVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLS 220 (289)
Q Consensus 141 ~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~ 220 (289)
. .....-++++++.+ |++.|+|.+. ++.+++.+++||
T Consensus 92 ---~-------------~~~~~~~~~~~~~~--------~~l~H~p~~~-------------------~~~~~~~~~~l~ 128 (156)
T cd08165 92 ---Y-------------EMTTYKLERFEKVF--------ILLQHFPLYR-------------------LLQWLKPRLVLS 128 (156)
T ss_pred ---C-------------ccCHHHHHHHHHHe--------eeeeCChHHH-------------------HHHhhCCCEEEE
Confidence 0 01112233344333 9999999621 456678889999
Q ss_pred CCCccce--ecCCCeEEEecCCCC
Q 022941 221 KHGCIKY--SRQDSITYMENPGLI 242 (289)
Q Consensus 221 GH~H~~~--~~~~gi~~i~~g~~~ 242 (289)
||.|... ...+++..+|.++.+
T Consensus 129 GH~H~~~~~~~~~~~~e~~~~~~~ 152 (156)
T cd08165 129 GHTHSFCEVTHPDGTPEVTVPSFS 152 (156)
T ss_pred cccCCCceeEEECCEEEEEEecce
Confidence 9999954 566899999987764
No 40
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.29 E-value=4.4e-10 Score=103.97 Aligned_cols=95 Identities=5% Similarity=-0.008 Sum_probs=57.5
Q ss_pred CeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce-e----cCCCeEEEecCCCCCC-C-CCcc
Q 022941 177 QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY-S----RQDSITYMENPGLIES-G-NGRE 249 (289)
Q Consensus 177 ~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~----~~~gi~~i~~g~~~~~-~-~g~~ 249 (289)
.+.|++.|+........ .... ..++ ..+.|+|+.||.|... . ..++...+-+|+.-.. . .+..
T Consensus 201 ~fnIlv~Hq~~~~~~~~------~~ip---e~ll-p~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~ 270 (405)
T TIGR00583 201 WFNLLVLHQNHAAHTST------SFLP---ESFI-PDFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEA 270 (405)
T ss_pred ceEEEEeCceecCCCCc------ccCc---hhhh-hccCcEEEecccccccccccccCCCCceEEECCCccccccccccc
Confidence 46899999997332211 0111 1223 4579999999999843 1 1223344445553222 2 2234
Q ss_pred cCCcEEEEEEeCcEEEEEEEcCC-CcEEEEEEE
Q 022941 250 MVDGFLLHKVSSLEILTYFVTLE-GEVVYRTAT 281 (289)
Q Consensus 250 ~~~gf~~v~v~~~~i~~~~~~~~-g~~~~~~~i 281 (289)
.+.||.+++++++.++++.+... -+.+...++
T Consensus 271 ~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i 303 (405)
T TIGR00583 271 LPKHVFILNIKGRKFASKPIPLQTVRPFVMKEI 303 (405)
T ss_pred CCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEE
Confidence 68999999999888999988765 344554444
No 41
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.28 E-value=3.5e-11 Score=94.45 Aligned_cols=114 Identities=15% Similarity=0.285 Sum_probs=71.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEeEeCC
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIRLP 132 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~~~p 132 (289)
+++||+|.. ....+.+. ....++|+++++||+... .. .....+ .+.|++.++||||
T Consensus 1 ~viSDtH~~----~~~~~~~~--~~~~~~d~ii~~GD~~~~--~~-~~~~~~--~~~~~~~V~GN~D------------- 56 (129)
T cd07403 1 LVISDTESP----ALYSPEIK--VRLEGVDLILSAGDLPKE--YL-EYLVTM--LNVPVYYVHGNHD------------- 56 (129)
T ss_pred CeeccccCc----cccchHHH--hhCCCCCEEEECCCCChH--HH-HHHHHH--cCCCEEEEeCCCc-------------
Confidence 478998832 11222221 124789999999997421 11 111111 3668999999999
Q ss_pred CCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH
Q 022941 133 HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK 212 (289)
Q Consensus 133 ~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~ 212 (289)
..|+++|+|++...... . ....-.+.+.+++++
T Consensus 57 ---------------------------------------------~~Ilv~H~pp~~~~~~~-~-~~~~g~~~l~~~l~~ 89 (129)
T cd07403 57 ---------------------------------------------VDILLTHAPPAGIGDGE-D-FAHRGFEAFLDFIDR 89 (129)
T ss_pred ---------------------------------------------cCEEEECCCCCcCcCcc-c-ccccCHHHHHHHHHH
Confidence 45899999987543210 0 011224577788899
Q ss_pred hCCeEEEeCCCccce--e----cCCCeEEEe
Q 022941 213 FGVNTYLSKHGCIKY--S----RQDSITYME 237 (289)
Q Consensus 213 ~~V~~vl~GH~H~~~--~----~~~gi~~i~ 237 (289)
++++++|+||.|... . ..+++.++.
T Consensus 90 ~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n 120 (129)
T cd07403 90 FRPKLFIHGHTHLNYGYQLRIRRVGDTTVIN 120 (129)
T ss_pred HCCcEEEEcCcCCCcCccccccccCCEEEEe
Confidence 999999999999854 2 245566653
No 42
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.27 E-value=1.4e-10 Score=99.52 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=94.8
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCcee---
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQ--- 126 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~--- 126 (289)
+|++++||.|..... .. .+..++.+||+|+++||++.... +..+.+..+..|+++++||||.+.+...
T Consensus 1 ~rIa~isDiHg~~~~-~~-----~~~l~~~~pD~Vl~~GDi~~~~~---~~~~~l~~l~~p~~~V~GNHD~~~~~~~~~k 71 (238)
T cd07397 1 LRIAIVGDVHGQWDL-ED-----IKALHLLQPDLVLFVGDFGNESV---QLVRAISSLPLPKAVILGNHDAWYDATFRKK 71 (238)
T ss_pred CEEEEEecCCCCchH-HH-----HHHHhccCCCEEEECCCCCcChH---HHHHHHHhCCCCeEEEcCCCcccccccccch
Confidence 589999997743221 11 12344568999999999975432 2233445667899999999995443211
Q ss_pred -----EeEeCCC-----CC-----eEEEEEEcCCCccC--CCCCCC------C-CCcHHHHHHHHHHHHhh-cCCCeEEE
Q 022941 127 -----EQIRLPH-----GE-----ALDIIGVNTGSLQG--KIPTAL------P-SASGDLLLNWLKSALEA-TNGQWCIV 181 (289)
Q Consensus 127 -----~~~~~p~-----~~-----~~~~i~lDt~~~~~--~~~~~~------~-~~~~~~Ql~WL~~~L~~-~~~~~~iV 181 (289)
+++.... .+ ...+..+-+.++.. .++..+ . ...-++-++.+-+.++. .+....|+
T Consensus 72 ~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~Vl 151 (238)
T cd07397 72 GDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLIL 151 (238)
T ss_pred HHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEE
Confidence 0000000 00 01122222333221 111110 0 11223334444444533 23456899
Q ss_pred Eeecccccccccc------------chhhHHhhHHHHHHHHHHhCCeEEEeCCCccc--ee---------cCCCeEEEec
Q 022941 182 VGFHPLVICEEHE------------EQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIK--YS---------RQDSITYMEN 238 (289)
Q Consensus 182 ~~HhP~~~~~~~~------------~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~--~~---------~~~gi~~i~~ 238 (289)
+.|.++...+... .+.....+++++..+-..-.++++++||.|.. +. ..+|+.|+.+
T Consensus 152 iaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~gt~y~N~ 231 (238)
T cd07397 152 LAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAVDREGTVYLNA 231 (238)
T ss_pred EeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCcccccccccceeeecCCCeEEEec
Confidence 9999997765320 00111334444433332234899999999985 31 1267888876
Q ss_pred CCC
Q 022941 239 PGL 241 (289)
Q Consensus 239 g~~ 241 (289)
+..
T Consensus 232 a~~ 234 (238)
T cd07397 232 ASV 234 (238)
T ss_pred ccc
Confidence 543
No 43
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.19 E-value=6.7e-10 Score=105.18 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=104.9
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--------------------------hhh
Q 022941 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--------------------------LKQ 98 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--------------------------~~~ 98 (289)
.....+||++.++....... ...+..+++..+|||+|++||....+. .|+
T Consensus 101 ~~~~~~r~a~~SC~~~~~~~----~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR 176 (453)
T PF09423_consen 101 GDPDPFRFAFGSCQNYEDGY----FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYR 176 (453)
T ss_dssp -----EEEEEE----CCC-------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHH
T ss_pred CCCCceEEEEECCCCcccCh----HHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHH
Confidence 34566999999994432111 233444454468999999999643221 111
Q ss_pred hhhcc------CCCC--CCCeEEecCCCcCCCCcee-----------Ee-----------E--eCC--------------
Q 022941 99 NATWL------FPSL--KVPWYTTKASKEKEVGCFQ-----------EQ-----------I--RLP-------------- 132 (289)
Q Consensus 99 ~~~~~------~~~l--~~P~~~v~GNHD~~~~~~~-----------~~-----------~--~~p-------------- 132 (289)
..|.. +..+ .+|++++.-.|| +..+.. .. | ++|
T Consensus 177 ~~y~~~~~~p~l~~~~~~~P~~~iwDDHd-i~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y 255 (453)
T PF09423_consen 177 RRYRQYRSDPDLRRLHANVPWIMIWDDHD-IGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIY 255 (453)
T ss_dssp HHHHHHHT-HHHHHHHHHSEEEE---STT-TSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----
T ss_pred HHHHHHcCCHHHHHHhhcccEEEEccCce-ecccccCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceE
Confidence 11211 1112 689999999999 332221 00 0 011
Q ss_pred ----CCCeEEEEEEcCCCccCCCC------------CCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccc---
Q 022941 133 ----HGEALDIIGVNTGSLQGKIP------------TALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEH--- 193 (289)
Q Consensus 133 ----~~~~~~~i~lDt~~~~~~~~------------~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~--- 193 (289)
.+..+.|++||+..+..... .....-++.+|++||++.|+++.++|+||+.-.|+......
T Consensus 256 ~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a~~kvi~s~v~~~~~~~~~~~ 335 (453)
T PF09423_consen 256 RSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQATWKVIGSSVPFSPLNFPDAA 335 (453)
T ss_dssp EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--SSEEEEE-SS--S---SS-SS
T ss_pred EEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCCcEEEEEeCCceecccccccc
Confidence 02338999999987664211 12234789999999999999998999999987776443221
Q ss_pred -------cchhhHHhhHHHHHHHHHHhCCe--EEEeCCCccce----ecCC---------CeEEEecCCCCCC-C-----
Q 022941 194 -------EEQLEAKKIYEPLHHIFMKFGVN--TYLSKHGCIKY----SRQD---------SITYMENPGLIES-G----- 245 (289)
Q Consensus 194 -------~~~~~~~~~~~~l~~ll~~~~V~--~vl~GH~H~~~----~~~~---------gi~~i~~g~~~~~-~----- 245 (289)
..+......+++|+++|++.++. ++|||..|... .... .+.-+++++.+.. .
T Consensus 336 ~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~~~~~~~~~~~~~~~~~Ef~~s~vts~~~~~~~~ 415 (453)
T PF09423_consen 336 EGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASRIPPDDADPPDGPGSVGVEFTSSSVTSPGFGLGTS 415 (453)
T ss_dssp -S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEEEESSTT---TTS-EEEEEEE---SSTT-S-BSB-
T ss_pred cccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeeecccccccccCCCCCeEEEEECCCccCCCcccccc
Confidence 11222234578999999988774 78999999943 1111 1233454442211 1
Q ss_pred ----------CC-----cccCCcEEEEEEeCcEEEEEE
Q 022941 246 ----------NG-----REMVDGFLLHKVSSLEILTYF 268 (289)
Q Consensus 246 ----------~g-----~~~~~gf~~v~v~~~~i~~~~ 268 (289)
+. .....||.+|+++++.++.++
T Consensus 416 ~~~~~~~~~~np~~~~~~~~~~G~~~i~~~~~~~~~~~ 453 (453)
T PF09423_consen 416 PALDRALDKANPHLKFADLRNFGYVEIDITPERVTAEW 453 (453)
T ss_dssp TTHHH-HHHH-TTEEEEE-B-EEEEEEEEETTEEEEEE
T ss_pred hhhhhhhhhcCCceEEeECCCCcEEEEEEccceEEEEC
Confidence 00 346899999999999988764
No 44
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.18 E-value=1.7e-09 Score=88.51 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=104.9
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCC-CCCCeEEecCCCcCCCCceeEe
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPS-LKVPWYTTKASKEKEVGCFQEQ 128 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~-l~~P~~~v~GNHD~~~~~~~~~ 128 (289)
.+++++||+|.... . .+...+.....++|+||++||...... ...++. +..+++.|.||.|.....
T Consensus 2 m~ilviSDtH~~~~---~-~~~~~~~~~~~~~d~vih~GD~~~~~~-----~~~l~~~~~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLR---A-IEKALKIFNLEKVDAVIHAGDSTSPFT-----LDALEGGLAAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred cEEEEEeccCCChh---h-hhHHHHHhhhcCCCEEEECCCcCCccc-----hHHhhcccccceEEEEccCCCcccc----
Confidence 47899999887443 1 222333445679999999999754322 112222 567899999999921100
Q ss_pred EeCCCCCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHH
Q 022941 129 IRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHH 208 (289)
Q Consensus 129 ~~~p~~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ 208 (289)
-..|. +..+ .-+..+|.+.|=-.+..... ...+..
T Consensus 69 ~~~p~----------------------------------~~~~--~~~g~ki~l~HGh~~~~~~~---------~~~l~~ 103 (172)
T COG0622 69 EELPE----------------------------------ELVL--EVGGVKIFLTHGHLYFVKTD---------LSLLEY 103 (172)
T ss_pred ccCCh----------------------------------hHeE--EECCEEEEEECCCccccccC---------HHHHHH
Confidence 00000 0011 11346788888655442211 123444
Q ss_pred HHHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEEEcCCC
Q 022941 209 IFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYFVTLEG 273 (289)
Q Consensus 209 ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~~~~g 273 (289)
+.++.++|+++.||+|... ...+++.++..|+.+.++.+ .+.+|.++++.+.++.+.+++.+.
T Consensus 104 la~~~~~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr~~--~~~sy~il~~~~~~~~~~~~~~~~ 167 (172)
T COG0622 104 LAKELGADVLIFGHTHKPVAEKVGGILLVNPGSVSGPRGG--NPASYAILDVDNLEVEVLFLERDR 167 (172)
T ss_pred HHHhcCCCEEEECCCCcccEEEECCEEEEcCCCcCCCCCC--CCcEEEEEEcCCCEEEEEEeeccc
Confidence 5567789999999999965 66678888888887776432 445999999999999988876554
No 45
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.17 E-value=2.8e-10 Score=100.68 Aligned_cols=94 Identities=7% Similarity=-0.009 Sum_probs=54.4
Q ss_pred hccCCCceeeecccCCCCCCCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCC--Chhhhhhhc
Q 022941 25 LNLGQPQKSIYQRTNGISSNRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGED--DPLKQNATW 102 (289)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~--~~~~~~~~~ 102 (289)
+.....+...+... .-++......++++.++|.|..... ....+.+.++.+ ..||+|+++||+... .+.+....+
T Consensus 21 ~~~~~l~~~~~~i~-~~~~~~~~~~~~iv~lSDlH~~~~~-~~~~~~~~~i~~-~~~DlivltGD~~~~~~~~~~~~~~~ 97 (284)
T COG1408 21 LEPGWLRVVKLTIL-TPKLPASLQGLKIVQLSDLHSLPFR-EEKLALLIAIAN-ELPDLIVLTGDYVDGDRPPGVAALAL 97 (284)
T ss_pred cccceEEEEEEEee-cCCCCcccCCeEEEEeehhhhchhh-HHHHHHHHHHHh-cCCCEEEEEeeeecCCCCCCHHHHHH
Confidence 44444555444211 1112345678899999997765443 333333434433 456999999997552 223333333
Q ss_pred cCCCC--CCCeEEecCCCcCC
Q 022941 103 LFPSL--KVPWYTTKASKEKE 121 (289)
Q Consensus 103 ~~~~l--~~P~~~v~GNHD~~ 121 (289)
.+..| ..++|++.||||+.
T Consensus 98 ~L~~L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 98 FLAKLKAPLGVFAVLGNHDYG 118 (284)
T ss_pred HHHhhhccCCEEEEecccccc
Confidence 44444 45689999999943
No 46
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.11 E-value=6.6e-10 Score=89.27 Aligned_cols=151 Identities=13% Similarity=0.030 Sum_probs=80.7
Q ss_pred CccEEEEcCCCCC--CChhhhhhhccCCCCCCCeEEecCCCcCCCCcee-------EeEeCCC----CCeEEEEE---Ec
Q 022941 80 DARFVINTSELGE--DDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQ-------EQIRLPH----GEALDIIG---VN 143 (289)
Q Consensus 80 ~pdfvv~~GD~~~--~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~-------~~~~~p~----~~~~~~i~---lD 143 (289)
.=|.|++.||++- +-++-++.++.+..|+..-|.+.||||+|..... ...+..+ ..++.+++ .|
T Consensus 43 ~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~rGNHDYWw~s~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~ 122 (230)
T COG1768 43 PEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIRGNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRGWD 122 (230)
T ss_pred hhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEecCCccccchHHHHHhhcCchHhhhccceeEeeEEEEEeeccc
Confidence 3489999999852 1111222234456676677999999996543210 0000111 11222222 12
Q ss_pred CCCccCCCCCCCCCCcHHHHHHHHHHH-HhhcCC--CeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEe
Q 022941 144 TGSLQGKIPTALPSASGDLLLNWLKSA-LEATNG--QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLS 220 (289)
Q Consensus 144 t~~~~~~~~~~~~~~~~~~Ql~WL~~~-L~~~~~--~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~ 220 (289)
|..+..+-.+.....+-..++..|+.. .++-++ ...||+.|+|+++..... ..+.+++++++|+.++.
T Consensus 123 s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~---------~~~sevlee~rv~~~ly 193 (230)
T COG1768 123 SPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTP---------GPFSEVLEEGRVSKCLY 193 (230)
T ss_pred CCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCC---------cchHHHHhhcceeeEEe
Confidence 221110001111112333344455442 222222 368999999999876431 24567889999999999
Q ss_pred CCCcc-ce-----ecCCCeEEEecC
Q 022941 221 KHGCI-KY-----SRQDSITYMENP 239 (289)
Q Consensus 221 GH~H~-~~-----~~~~gi~~i~~g 239 (289)
||.|. +. ....||.|+...
T Consensus 194 GHlHgv~~p~~~~s~v~Gi~y~Lva 218 (230)
T COG1768 194 GHLHGVPRPNIGFSNVRGIEYMLVA 218 (230)
T ss_pred eeccCCCCCCCCcccccCceEEEEe
Confidence 99998 42 234577776543
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.10 E-value=6.9e-10 Score=91.29 Aligned_cols=117 Identities=11% Similarity=0.095 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhCCccEEEEcCCCCCCC-----hhhhhhhc----cCCC-----CCCCeEEecCCCcCCCCceeEeEeCCC
Q 022941 68 LLKQMEDVAKSYDARFVINTSELGEDD-----PLKQNATW----LFPS-----LKVPWYTTKASKEKEVGCFQEQIRLPH 133 (289)
Q Consensus 68 ~~~~l~~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~~----~~~~-----l~~P~~~v~GNHD~~~~~~~~~~~~p~ 133 (289)
..+.+....+..+||+|+++||+.... ..|.+..+ .+.. ..+|++.++||||...+
T Consensus 33 ~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~---------- 102 (171)
T cd07384 33 MRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYG---------- 102 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCCC----------
Confidence 344555666778999999999985432 23443332 2321 16899999999992110
Q ss_pred CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh
Q 022941 134 GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF 213 (289)
Q Consensus 134 ~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~ 213 (289)
... .. ...++-+++. -|++.|.|.+. ++++.
T Consensus 103 ----------~~~-----------~~-~~~~~~f~~~--------fi~l~H~p~~~-------------------~~~~~ 133 (171)
T cd07384 103 ----------EVI-----------SF-PEVVDRFERY--------FILLTHIPLYR-------------------LLDTI 133 (171)
T ss_pred ----------Ccc-----------cc-HHHHHHHHhh--------heeEECCccHH-------------------HHhcc
Confidence 000 00 0111111111 19999999621 56777
Q ss_pred CCeEEEeCCCccce---ec--CCCeEEEecCCCCC
Q 022941 214 GVNTYLSKHGCIKY---SR--QDSITYMENPGLIE 243 (289)
Q Consensus 214 ~V~~vl~GH~H~~~---~~--~~gi~~i~~g~~~~ 243 (289)
+++++||||.|.+. .. .+++.-|+.++.+.
T Consensus 134 ~~~~~lsGH~H~~~~~~~~~~~~~~~ei~v~S~s~ 168 (171)
T cd07384 134 KPVLILSGHDHDQCEVVHSSKAGSVREITVKSFSW 168 (171)
T ss_pred CceEEEeCcccCCeEEEecCCCCCceEEeeccchh
Confidence 89999999999854 22 35677787777643
No 48
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.06 E-value=1.1e-09 Score=91.18 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=68.3
Q ss_pred HHHHHHHhhCCccEEEEcCCCCCCC-----hhhhhhhc----cCC-CCCCCeEEecCCCcCCCCceeEeEeCCCCCeEEE
Q 022941 70 KQMEDVAKSYDARFVINTSELGEDD-----PLKQNATW----LFP-SLKVPWYTTKASKEKEVGCFQEQIRLPHGEALDI 139 (289)
Q Consensus 70 ~~l~~~~~~~~pdfvv~~GD~~~~~-----~~~~~~~~----~~~-~l~~P~~~v~GNHD~~~~~~~~~~~~p~~~~~~~ 139 (289)
+......+..+||+|+++||+.+.+ .+|.+.++ +|. ...+|++.+||||| ..+. +
T Consensus 32 r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHD-IG~~-----------~--- 96 (195)
T cd08166 32 KTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDND-IGGE-----------E--- 96 (195)
T ss_pred HHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCC-cCCC-----------C---
Confidence 3344445667999999999985432 23444332 332 23789999999999 2110 0
Q ss_pred EEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEE
Q 022941 140 IGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYL 219 (289)
Q Consensus 140 i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl 219 (289)
....++-++..++.. |++.|.|+...+.. .+..++.++.++++|
T Consensus 97 -----------------~~~~~~~v~RF~~~F--------i~lsH~P~~~~~~~-----------~~~~~~~~~~p~~If 140 (195)
T cd08166 97 -----------------EDPIESKIRRFEKYF--------IMLSHVPLLAEGGQ-----------ALKHVVTDLDPDLIF 140 (195)
T ss_pred -----------------CCcCHHHHHHHHHhh--------eeeecccccccccH-----------HHHHHHHhcCceEEE
Confidence 001122233334333 99999999775431 456778889999999
Q ss_pred eCCCccce
Q 022941 220 SKHGCIKY 227 (289)
Q Consensus 220 ~GH~H~~~ 227 (289)
+||.|.+.
T Consensus 141 s~H~H~s~ 148 (195)
T cd08166 141 SAHRHKSS 148 (195)
T ss_pred EcCcccee
Confidence 99999964
No 49
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.06 E-value=2.4e-09 Score=100.72 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhCC-ccEEEEcCCCCCCChhhhhh----h-------ccCCC-C-CCCeEEecCCCcCCCCce------eE
Q 022941 68 LLKQMEDVAKSYD-ARFVINTSELGEDDPLKQNA----T-------WLFPS-L-KVPWYTTKASKEKEVGCF------QE 127 (289)
Q Consensus 68 ~~~~l~~~~~~~~-pdfvv~~GD~~~~~~~~~~~----~-------~~~~~-l-~~P~~~v~GNHD~~~~~~------~~ 127 (289)
+..+|..+.+..+ +|||+.+||....+ .|... + +.+.+ + .+|+|+..||||...-+. ..
T Consensus 197 ies~L~~ike~~~~iD~I~wTGD~~~H~-~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~ 275 (577)
T KOG3770|consen 197 IESALDHIKENHKDIDYIIWTGDNVAHD-VWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPK 275 (577)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCccc-chhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcc
Confidence 3445555555555 99999999986544 23211 1 11111 1 789999999999432111 00
Q ss_pred -------------eE--eCC--------C--------CCeEEEEEEcCCCccCCC-CCCCCCCcHHHHHHHHHHHHhhcC
Q 022941 128 -------------QI--RLP--------H--------GEALDIIGVNTGSLQGKI-PTALPSASGDLLLNWLKSALEATN 175 (289)
Q Consensus 128 -------------~~--~~p--------~--------~~~~~~i~lDt~~~~~~~-~~~~~~~~~~~Ql~WL~~~L~~~~ 175 (289)
.| .+| . .++.++|.||+....... +-.........|++|+..+|..+.
T Consensus 276 ~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae 355 (577)
T KOG3770|consen 276 RHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE 355 (577)
T ss_pred hhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH
Confidence 01 112 0 267999999998654311 101112455678999999999765
Q ss_pred --CCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhC--CeEEEeCCCcc-ce----ecCCC----eEEEecCCCC
Q 022941 176 --GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFG--VNTYLSKHGCI-KY----SRQDS----ITYMENPGLI 242 (289)
Q Consensus 176 --~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~--V~~vl~GH~H~-~~----~~~~g----i~~i~~g~~~ 242 (289)
...+=|++|.|+...... ......+..++.++. +...|.||.|. +. .+..+ +-|+..+-..
T Consensus 356 ~~GekVhil~HIPpG~~~c~------~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtt 429 (577)
T KOG3770|consen 356 SAGEKVHILGHIPPGDGVCL------EGWSINFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTT 429 (577)
T ss_pred hcCCEEEEEEeeCCCCcchh------hhhhHHHHHHHHHHHHhhhhhccccCcceeEEEEeccccCCceeeeecccccee
Confidence 347889999998663332 122344556677773 56789999998 43 12222 2333211111
Q ss_pred CCCCCcccCCcEEEEEEe
Q 022941 243 ESGNGREMVDGFLLHKVS 260 (289)
Q Consensus 243 ~~~~g~~~~~gf~~v~v~ 260 (289)
. ....+||.+..++
T Consensus 430 y----~~~~p~yr~y~~~ 443 (577)
T KOG3770|consen 430 Y----YNKNPGYRIYAVD 443 (577)
T ss_pred h----hccCCCceecccC
Confidence 1 3457788877776
No 50
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.04 E-value=1.6e-09 Score=94.11 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCChhH---HHHHHHHHHHHhhCCccEEEEcCCCCCC----C---hhhhhhhccC---CCCCCCeEEecCC
Q 022941 51 YFISVTGGFRPLEQQ---TLLLKQMEDVAKSYDARFVINTSELGED----D---PLKQNATWLF---PSLKVPWYTTKAS 117 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~---~~~~~~l~~~~~~~~pdfvv~~GD~~~~----~---~~~~~~~~~~---~~l~~P~~~v~GN 117 (289)
+++++||.|.+.... ..+.+.+.. ...+||.|+++||+.+. + +......+.+ ...++|+|.++||
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~--~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GN 79 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRG--EARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGN 79 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHh--hhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 689999988665322 233333322 23579999999997431 1 1112222333 3335899999999
Q ss_pred CcCCC
Q 022941 118 KEKEV 122 (289)
Q Consensus 118 HD~~~ 122 (289)
||.+.
T Consensus 80 HD~~~ 84 (241)
T PRK05340 80 RDFLL 84 (241)
T ss_pred Cchhh
Confidence 99543
No 51
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.01 E-value=1.1e-09 Score=94.62 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=40.4
Q ss_pred EEEeCCCCCChhH---HHHHHHHHHHHhhCCccEEEEcCCCCCC----C--hh-hhhhhc---cCCCCCCCeEEecCCCc
Q 022941 53 ISVTGGFRPLEQQ---TLLLKQMEDVAKSYDARFVINTSELGED----D--PL-KQNATW---LFPSLKVPWYTTKASKE 119 (289)
Q Consensus 53 ~~~gD~~~g~~~~---~~~~~~l~~~~~~~~pdfvv~~GD~~~~----~--~~-~~~~~~---~~~~l~~P~~~v~GNHD 119 (289)
++++|.|.+.... ..+.+.+.+.. .+||+|+++||+... + .. .+...+ .+...++|+|.++||||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 5789988765322 23334443322 279999999997431 1 11 111222 23334689999999999
Q ss_pred CCC
Q 022941 120 KEV 122 (289)
Q Consensus 120 ~~~ 122 (289)
++.
T Consensus 80 ~~~ 82 (231)
T TIGR01854 80 FLI 82 (231)
T ss_pred hhh
Confidence 543
No 52
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.2e-08 Score=94.75 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=45.8
Q ss_pred EEEEEEeCCCCCC---------hhHHHHHHHHHHHHhhCCccEEEEcCCCCCC-Ch------hhhhhhccCCCCCCCeEE
Q 022941 50 FYFISVTGGFRPL---------EQQTLLLKQMEDVAKSYDARFVINTSELGED-DP------LKQNATWLFPSLKVPWYT 113 (289)
Q Consensus 50 ~~f~~~gD~~~g~---------~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~-~~------~~~~~~~~~~~l~~P~~~ 113 (289)
+||++++|.|.|. ..+......+...+.+.++||||++||+-.. .+ .+.+.++.+...++|+|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 4899999987772 1222333334445667889999999998432 22 122222334556799999
Q ss_pred ecCCCc
Q 022941 114 TKASKE 119 (289)
Q Consensus 114 v~GNHD 119 (289)
++||||
T Consensus 81 I~GNHD 86 (390)
T COG0420 81 IAGNHD 86 (390)
T ss_pred ecCCCC
Confidence 999999
No 53
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.98 E-value=3.9e-08 Score=89.65 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=47.0
Q ss_pred EEEEEEeCCCCCChh--------HHHHHHHHHHHHhhCCccEEEEcCCCCCCC--hh--hhhh-----hccCCCCCCCeE
Q 022941 50 FYFISVTGGFRPLEQ--------QTLLLKQMEDVAKSYDARFVINTSELGEDD--PL--KQNA-----TWLFPSLKVPWY 112 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~--------~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~--~~--~~~~-----~~~~~~l~~P~~ 112 (289)
+||+++||.|.|... +....+.+.+.+.+.+||+|+++||+-... +. -..+ ++.+...++|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 489999997776421 334455555566778999999999984321 11 1111 122344579999
Q ss_pred EecCCCcC
Q 022941 113 TTKASKEK 120 (289)
Q Consensus 113 ~v~GNHD~ 120 (289)
.++||||.
T Consensus 81 ~I~GNHD~ 88 (340)
T PHA02546 81 VLVGNHDM 88 (340)
T ss_pred EEccCCCc
Confidence 99999994
No 54
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.92 E-value=8.8e-08 Score=84.90 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH-hCCeEEEeCCCccce-e-cCCCeEEEe
Q 022941 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK-FGVNTYLSKHGCIKY-S-RQDSITYME 237 (289)
Q Consensus 161 ~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~-~~V~~vl~GH~H~~~-~-~~~gi~~i~ 237 (289)
.+.+++..++|++...+.+|+++|-+....... ..........+.++ -+||++|+||.|... . ..+++.++.
T Consensus 169 ~~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~-----~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q 243 (277)
T cd07410 169 VETAKKYVPKLRAEGADVVVVLAHGGFERDLEE-----SLTGENAAYELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQ 243 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCcCCCccc-----ccCCccHHHHHHhcCCCCcEEEeCCCccccccCCcCCEEEEc
Confidence 345666667777656678999999887543210 00111122344455 389999999999854 3 456776666
Q ss_pred cCCCCCCCCCcccCCcEEEEEEeCcEEEEEEEc
Q 022941 238 NPGLIESGNGREMVDGFLLHKVSSLEILTYFVT 270 (289)
Q Consensus 238 ~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~~ 270 (289)
+|+-+ ..-|...++++.+.=+++..+
T Consensus 244 ~g~~g-------~~vg~l~l~~~~~~~~~~i~~ 269 (277)
T cd07410 244 PGNWG-------SHLGVIDLTLEKDDGKWKVTD 269 (277)
T ss_pred CChhh-------CEEEEEEEEEEEcCCEEEEEe
Confidence 55432 235666666664432333333
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=3.5e-08 Score=86.33 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEEEEeCCCCCCh--------hHHHHHHHHHHHHhhCCccEEEEcCCCCCCC-h-hh-----hhhhccCCCCC-CCeEE
Q 022941 50 FYFISVTGGFRPLE--------QQTLLLKQMEDVAKSYDARFVINTSELGEDD-P-LK-----QNATWLFPSLK-VPWYT 113 (289)
Q Consensus 50 ~~f~~~gD~~~g~~--------~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~-~-~~-----~~~~~~~~~l~-~P~~~ 113 (289)
++|++++|.|.|.. .+....+.+.+.+.+.+||+|+++||+.... + .+ ......+.+.. +|++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 47999999766531 2334445555566677899999999985432 1 11 11122233344 89999
Q ss_pred ecCCCc
Q 022941 114 TKASKE 119 (289)
Q Consensus 114 v~GNHD 119 (289)
++||||
T Consensus 81 i~GNHD 86 (253)
T TIGR00619 81 ISGNHD 86 (253)
T ss_pred EccCCC
Confidence 999999
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.78 E-value=7.7e-07 Score=78.05 Aligned_cols=171 Identities=8% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhCCcc-EEEEcCCCCCCChh--h---hhhhccCCCCCCCeEEecCCCcCCCCc--e------------
Q 022941 66 TLLLKQMEDVAKSYDAR-FVINTSELGEDDPL--K---QNATWLFPSLKVPWYTTKASKEKEVGC--F------------ 125 (289)
Q Consensus 66 ~~~~~~l~~~~~~~~pd-fvv~~GD~~~~~~~--~---~~~~~~~~~l~~P~~~v~GNHD~~~~~--~------------ 125 (289)
.+++..+.+.. +.+|+ +++.+||+....+. + +...+.++.++.. +.++||||+..+. +
T Consensus 24 ~rl~~~i~~~r-~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~d-~~~~GNHefd~g~~~l~~~~~~~~~~~L 101 (257)
T cd07406 24 ARFATLRKQLR-KENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGVD-LACFGNHEFDFGEDQLQKRLGESKFPWL 101 (257)
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCCc-EEeecccccccCHHHHHHHHhhCCCCEE
Confidence 34444454443 34567 99999997543321 1 1122345555543 6689999953321 0
Q ss_pred eEeEe----------C-C------CCCeEEEEEEcCCCccCCCCCCC----CCCcHHHHHHHHHHHHhhcCCCeEEEEee
Q 022941 126 QEQIR----------L-P------HGEALDIIGVNTGSLQGKIPTAL----PSASGDLLLNWLKSALEATNGQWCIVVGF 184 (289)
Q Consensus 126 ~~~~~----------~-p------~~~~~~~i~lDt~~~~~~~~~~~----~~~~~~~Ql~WL~~~L~~~~~~~~iV~~H 184 (289)
.+.+. . | ++-.+-|+++.+........... .....+.-.+|+ +.+++...+.+|++.|
T Consensus 102 ~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v-~~~~~~~~D~iVvl~H 180 (257)
T cd07406 102 SSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELV-DELREQGADLIIALTH 180 (257)
T ss_pred EEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHH-HHHHhCCCCEEEEEec
Confidence 00000 0 1 13345567665543221100000 112223333455 3455556788999999
Q ss_pred ccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCc
Q 022941 185 HPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSL 262 (289)
Q Consensus 185 hP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~ 262 (289)
-+... + . +++++. +||++|+||.|... ...+++..+.+|+-+. .-|-..++++.+
T Consensus 181 ~g~~~--------d-~-------~la~~~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~-------~vg~l~l~~~~~ 237 (257)
T cd07406 181 MRLPN--------D-K-------RLAREVPEIDLILGGHDHEYILVQVGGTPIVKSGSDFR-------TVYIITLTYDTK 237 (257)
T ss_pred cCchh--------h-H-------HHHHhCCCCceEEecccceeEeeeECCEEEEeCCcCcc-------eEEEEEEEEECC
Confidence 87521 0 1 233333 79999999999955 4456666666554432 344445555543
No 57
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.78 E-value=1.3e-08 Score=86.61 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccce-ecCCCeEEEecCC
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPG 240 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~ 240 (289)
.+.+..++++++++.+++||+|... ...+++.|+.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~ 216 (217)
T cd07398 178 EEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGD 216 (217)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCC
Confidence 4556667788899999999999965 5556888888775
No 58
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.69 E-value=4.1e-08 Score=80.51 Aligned_cols=40 Identities=10% Similarity=-0.031 Sum_probs=28.3
Q ss_pred CCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 79 YDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 79 ~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
.++|.|+++||+......- ...+.+..++.|++.|+||||
T Consensus 41 ~~~d~vi~~GDl~~~~~~~-~~~~~l~~~~~~~~~v~GNHD 80 (168)
T cd07390 41 GPDDTVYHLGDFSFGGKAG-TELELLSRLNGRKHLIKGNHD 80 (168)
T ss_pred CCCCEEEEeCCCCCCCChH-HHHHHHHhCCCCeEEEeCCCC
Confidence 3689999999986543211 113344556779999999999
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.68 E-value=2.2e-06 Score=75.16 Aligned_cols=199 Identities=10% Similarity=0.118 Sum_probs=100.3
Q ss_pred EEEEEEeCCCCCCh-------hHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhh-----hhhhccCCCCCCCeEEecCC
Q 022941 50 FYFISVTGGFRPLE-------QQTLLLKQMEDVAKSYDARFVINTSELGEDDPLK-----QNATWLFPSLKVPWYTTKAS 117 (289)
Q Consensus 50 ~~f~~~gD~~~g~~-------~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~-----~~~~~~~~~l~~P~~~v~GN 117 (289)
++++.++|.|.... .-.+++..+++..++ ++++++.+||.....+.. +...+.+..++..+ .++||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-Ecccc
Confidence 47888899543111 123344445444333 678999999975433211 11123455556555 56899
Q ss_pred CcCCCCce--------------eEe---------EeCC------C-CCeEEEEEEcCCCccC-CCCCCCCC----CcHHH
Q 022941 118 KEKEVGCF--------------QEQ---------IRLP------H-GEALDIIGVNTGSLQG-KIPTALPS----ASGDL 162 (289)
Q Consensus 118 HD~~~~~~--------------~~~---------~~~p------~-~~~~~~i~lDt~~~~~-~~~~~~~~----~~~~~ 162 (289)
||+..|.- .+. +..| + +-.+-++++-+..... ..+....+ ...++
T Consensus 79 Hefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~ 158 (257)
T cd07408 79 HEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEE 158 (257)
T ss_pred ccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHHHH
Confidence 99543310 000 0011 1 3345566665432111 11111001 11122
Q ss_pred HHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH-hCCeEEEeCCCccce-e---cCCCeEEEe
Q 022941 163 LLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK-FGVNTYLSKHGCIKY-S---RQDSITYME 237 (289)
Q Consensus 163 Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~-~~V~~vl~GH~H~~~-~---~~~gi~~i~ 237 (289)
-.+|+.+.+++...+-+|++.|-+....... ... ..+.++ .+||++|.||.|... . ..+++..+.
T Consensus 159 ~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~---~~~-------~~la~~~~giDvIigGH~H~~~~~~~~~~~~~~ivq 228 (257)
T cd07408 159 AKKVIVAALKAKGADVIVALGHLGVDRTSSP---WTS-------TELAANVTGIDLIIDGHSHTTIEIGKKDGNNVLLTQ 228 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC---ccH-------HHHHHhCCCceEEEeCCCcccccCcccccCCeEEEc
Confidence 2233244555556788999999887554211 011 122333 389999999999954 2 246666655
Q ss_pred cCCCCCCCCCcccCCcEEEEEEeCcEEEEE
Q 022941 238 NPGLIESGNGREMVDGFLLHKVSSLEILTY 267 (289)
Q Consensus 238 ~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~ 267 (289)
+|.-+ ..-|...+++++++..+.
T Consensus 229 ~g~~g-------~~vg~l~l~~~~~~~~~~ 251 (257)
T cd07408 229 TGAYL-------ANIGEVTLVFDTTTGTIK 251 (257)
T ss_pred CChHH-------ceEEEEEEEEECCCceEE
Confidence 44432 245555666666544443
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.68 E-value=4e-07 Score=79.78 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=87.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHh--hCCccEEEEcCCCCCC----Ch----------hhhhhhccC---CCCCCCeE
Q 022941 52 FISVTGGFRPLEQQTLLLKQMEDVAK--SYDARFVINTSELGED----DP----------LKQNATWLF---PSLKVPWY 112 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~~~~l~~~~~--~~~pdfvv~~GD~~~~----~~----------~~~~~~~~~---~~l~~P~~ 112 (289)
++|+||.|. .-..+.+.+....+ ..++|+||++||.+.. +. .+..+.+.+ ...++|++
T Consensus 1 i~v~Gd~HG---~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~ 77 (262)
T cd00844 1 IAVEGCCHG---ELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTI 77 (262)
T ss_pred CEEEecCCc---cHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEE
Confidence 478899654 12233333333322 3579999999997421 11 111111223 33577889
Q ss_pred EecCCCcCCCCcee---------Ee-EeCCC-----CCeEEEEEEcCCCccCCCCCCC--CCCcHHHHHHHH-------H
Q 022941 113 TTKASKEKEVGCFQ---------EQ-IRLPH-----GEALDIIGVNTGSLQGKIPTAL--PSASGDLLLNWL-------K 168 (289)
Q Consensus 113 ~v~GNHD~~~~~~~---------~~-~~~p~-----~~~~~~i~lDt~~~~~~~~~~~--~~~~~~~Ql~WL-------~ 168 (289)
.|.||||. ...+. .. +.+-. -+++++.++-...-...+.... .....+.++..+ -
T Consensus 78 fi~GNHE~-~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~ 156 (262)
T cd00844 78 FIGGNHEA-SNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEV 156 (262)
T ss_pred EECCCCCC-HHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHH
Confidence 99999993 21111 00 11111 1446666664322111111110 012233443321 1
Q ss_pred HHHhhcCCCeEEEEeeccccccccccchh-----------hH---HhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 169 SALEATNGQWCIVVGFHPLVICEEHEEQL-----------EA---KKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 169 ~~L~~~~~~~~iV~~HhP~~~~~~~~~~~-----------~~---~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
+.|.....+.-|+++|.||.....++... +. ..-...+..++++.+-+..||||.|..+
T Consensus 157 ~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f 229 (262)
T cd00844 157 FKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKF 229 (262)
T ss_pred HHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccc
Confidence 12333233456999999998876542110 00 0012457788999999999999999943
No 61
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.67 E-value=1.8e-06 Score=75.30 Aligned_cols=188 Identities=11% Similarity=0.057 Sum_probs=92.6
Q ss_pred EEEEEEeCCCCCC------hhHHHHHHHHHHHHhhCCcc-EEEEcCCCCCCChhh-----hhhhccCCCCCCCeEEecCC
Q 022941 50 FYFISVTGGFRPL------EQQTLLLKQMEDVAKSYDAR-FVINTSELGEDDPLK-----QNATWLFPSLKVPWYTTKAS 117 (289)
Q Consensus 50 ~~f~~~gD~~~g~------~~~~~~~~~l~~~~~~~~pd-fvv~~GD~~~~~~~~-----~~~~~~~~~l~~P~~~v~GN 117 (289)
+++++++|.|... ....++...++++. +..|| +++.+||........ +...+.+..++ +-+.++||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~-~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-~d~~~~GN 78 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEER-AENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG-YDAVTIGN 78 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHH-hcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC-CCEEeecc
Confidence 5789999965221 12344444454443 34677 889999974332211 11123344444 34678899
Q ss_pred CcCCCCc--e------------eEeEe-----------CC------CCCeEEEEEEcCCCccCC-CCCCCCCCcHHHHHH
Q 022941 118 KEKEVGC--F------------QEQIR-----------LP------HGEALDIIGVNTGSLQGK-IPTALPSASGDLLLN 165 (289)
Q Consensus 118 HD~~~~~--~------------~~~~~-----------~p------~~~~~~~i~lDt~~~~~~-~~~~~~~~~~~~Ql~ 165 (289)
||+..+. + .+.+. .| ++..+-|+++.+...... .+............+
T Consensus 79 He~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (252)
T cd00845 79 HEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDLAE 158 (252)
T ss_pred ccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCHHH
Confidence 9943221 0 01110 00 123355666654332110 010000000011112
Q ss_pred HHHH--HHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH-hCCeEEEeCCCccce-e--cCCCeEEEecC
Q 022941 166 WLKS--ALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK-FGVNTYLSKHGCIKY-S--RQDSITYMENP 239 (289)
Q Consensus 166 WL~~--~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~-~~V~~vl~GH~H~~~-~--~~~gi~~i~~g 239 (289)
.+++ .+...+.+.+|++.|-|.... . .++++ .+||++|+||.|... . ..+++.++.+|
T Consensus 159 ~~~~~~~~~~~~~D~vIvl~H~g~~~~---------~-------~la~~~~giDlvlggH~H~~~~~~~~~~~~~v~~~g 222 (252)
T cd00845 159 AVAVAEELLAEGADVIILLSHLGLDDD---------E-------ELAEEVPGIDVILGGHTHHLLEEPEVVNGTLIVQAG 222 (252)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCccch---------H-------HHHhcCCCccEEEcCCcCcccCCCcccCCEEEEeCC
Confidence 2222 223345678999999876431 1 12222 489999999999844 2 45677777665
Q ss_pred CCCCCCCCcccCCcEEEEEEeCc
Q 022941 240 GLIESGNGREMVDGFLLHKVSSL 262 (289)
Q Consensus 240 ~~~~~~~g~~~~~gf~~v~v~~~ 262 (289)
.-+ ..-|...++++++
T Consensus 223 ~~~-------~~~~~~~l~~~~~ 238 (252)
T cd00845 223 KYG-------KYVGEIDLELDDD 238 (252)
T ss_pred hhH-------ceEEEEEEEEECC
Confidence 432 2344455555544
No 62
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=3.8e-08 Score=83.38 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=90.2
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHhhC--CccEEEEcCCCCC---CChhhhhhh----cc---CCCCCCCeEEecCCCcCC
Q 022941 54 SVTGGFRPLEQQTLLLKQMEDVAKSY--DARFVINTSELGE---DDPLKQNAT----WL---FPSLKVPWYTTKASKEKE 121 (289)
Q Consensus 54 ~~gD~~~g~~~~~~~~~~l~~~~~~~--~pdfvv~~GD~~~---~~~~~~~~~----~~---~~~l~~P~~~v~GNHD~~ 121 (289)
.++|-|.+... ....+.+.+..+.. ..|-+.++||+.+ .+..|.+.. .. +..-+.|+|.++||||+.
T Consensus 2 FISDlHL~~~~-p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 2 FISDLHLGPKR-PALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred eeeccccCCCC-cHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 57897766321 22333344444443 4499999999732 111232221 11 233478999999999955
Q ss_pred CCceeEe-E----eCCC-----CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeecccc---
Q 022941 122 VGCFQEQ-I----RLPH-----GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLV--- 188 (289)
Q Consensus 122 ~~~~~~~-~----~~p~-----~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~--- 188 (289)
.++...+ + -.|+ ..+-+++.+-.-.+. ....+.+|++..-... --..+|.+.|+.
T Consensus 81 l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~----------t~~~~y~~~r~~~~~~--~~~~lflnl~l~~R~ 148 (237)
T COG2908 81 LGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFC----------TDDRAYQWFRYKVHWA--WLQLLFLNLPLRVRR 148 (237)
T ss_pred HHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCccc----------chHHHHHHHHHHcccH--HHHHHHHHhHHHHHH
Confidence 4543221 1 1222 112223333221111 2234555654322211 112334444443
Q ss_pred -------ccccccch--hh----HHhhHHHHHHHHHHhCCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 189 -------ICEEHEEQ--LE----AKKIYEPLHHIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 189 -------~~~~~~~~--~~----~~~~~~~l~~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
+....... .. .....+...+.+++++|+.++|||+|... ...+++.|++.|+=
T Consensus 149 ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW 215 (237)
T COG2908 149 RIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDW 215 (237)
T ss_pred HHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcc
Confidence 11100000 00 01224566777888999999999999966 77778999998873
No 63
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.65 E-value=5.8e-08 Score=80.77 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=29.6
Q ss_pred HhhCCccEEEEcCCCCC----CChhhhhhh----ccC-CC-C----------------CCCeEEecCCCc
Q 022941 76 AKSYDARFVINTSELGE----DDPLKQNAT----WLF-PS-L----------------KVPWYTTKASKE 119 (289)
Q Consensus 76 ~~~~~pdfvv~~GD~~~----~~~~~~~~~----~~~-~~-l----------------~~P~~~v~GNHD 119 (289)
....+||.|+++||+-. .|.+|.+.+ +++ .. . ++|++.++||||
T Consensus 40 ~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHD 109 (193)
T cd08164 40 QFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHD 109 (193)
T ss_pred HHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCccc
Confidence 34579999999999732 344554432 233 11 1 489999999999
No 64
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.51 E-value=9.8e-06 Score=70.72 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=91.3
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh-hhhhhhccCCCCCCCeEEecCCCcCCCCceeE--
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP-LKQNATWLFPSLKVPWYTTKASKEKEVGCFQE-- 127 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~-~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~-- 127 (289)
|++++||. .|...-..+.+.+.++.++.++||++..||+..... .-....+.+..+++-+ .+.|||++..+...+
T Consensus 1 ~ilfigdi-~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~-iTlGNH~fD~gel~~~l 78 (255)
T cd07382 1 KILFIGDI-VGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDV-ITMGNHTWDKKEILDFI 78 (255)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCE-EEecccccCcchHHHHH
Confidence 57889992 233334456666777666778999999999754331 1123344455555554 455999965553211
Q ss_pred --------eEeCCC-------------CCeEEEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 022941 128 --------QIRLPH-------------GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (289)
Q Consensus 128 --------~~~~p~-------------~~~~~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP 186 (289)
.-++|. +..+-++.+-+..+.. +. ...-+.++.+-++|++ ..+.+||.+|--
T Consensus 79 ~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~-----~~-~~P~~~~~~~v~~lk~-~~D~IIV~~H~g 151 (255)
T cd07382 79 DEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMP-----PL-DNPFRAADELLEELKE-EADIIFVDFHAE 151 (255)
T ss_pred hcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCC-----cC-CCHHHHHHHHHHHHhc-CCCEEEEEECCC
Confidence 012221 1122333332211110 11 1112223333344554 457889999974
Q ss_pred ccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce---ec-CCCeEEEecCCCCCC
Q 022941 187 LVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY---SR-QDSITYMENPGLIES 244 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~---~~-~~gi~~i~~g~~~~~ 244 (289)
..+ +. .++.. .-.-+||+++.||.|.+. +- .+|+-|++.-+.+++
T Consensus 152 ~ts----------Ek--~ala~-~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~ 200 (255)
T cd07382 152 ATS----------EK--IALGW-YLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 200 (255)
T ss_pred CCH----------HH--HHHHH-hCCCCceEEEeCCCCccCCccEEeeCCeEEEecCccccC
Confidence 210 10 11111 112259999999999965 22 388999988665544
No 65
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.50 E-value=1.3e-05 Score=70.47 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=43.7
Q ss_pred HHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH-hCCeEEEeCCCccce-e---cCCCeEEEecCCCC
Q 022941 168 KSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK-FGVNTYLSKHGCIKY-S---RQDSITYMENPGLI 242 (289)
Q Consensus 168 ~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~-~~V~~vl~GH~H~~~-~---~~~gi~~i~~g~~~ 242 (289)
.+.+++...+.+|++.|-+.... . .+.++ .+||++|+||.|... . ..+++.++.+|.-+
T Consensus 176 ~~~~~~~~~D~iI~l~H~g~~~~---------~-------~la~~~~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~ 239 (264)
T cd07411 176 VKLRREEGVDVVVLLSHNGLPVD---------V-------ELAERVPGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHG 239 (264)
T ss_pred HHHHHhCCCCEEEEEecCCchhh---------H-------HHHhcCCCCcEEEeCcccccccCcccccCCEEEEEcCccc
Confidence 43344445678999999875210 1 22333 379999999999733 2 24677666655543
Q ss_pred CCCCCcccCCcEEEEEEeCcEE
Q 022941 243 ESGNGREMVDGFLLHKVSSLEI 264 (289)
Q Consensus 243 ~~~~g~~~~~gf~~v~v~~~~i 264 (289)
. .-|-..++++++++
T Consensus 240 ~-------~vg~i~l~~~~~~i 254 (264)
T cd07411 240 K-------FLGRLDLDVRDGKI 254 (264)
T ss_pred c-------EEEEEEEEEECCEE
Confidence 2 34555555655543
No 66
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.43 E-value=1.5e-05 Score=71.14 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHH--hCCeEEEeCCCccce-e---cCCCeEEEecCC
Q 022941 167 LKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK--FGVNTYLSKHGCIKY-S---RQDSITYMENPG 240 (289)
Q Consensus 167 L~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~--~~V~~vl~GH~H~~~-~---~~~gi~~i~~g~ 240 (289)
.-++|++...+.+|++.|-......... ...........++.+ -+||++|+||.|... . ..+++.++.+|+
T Consensus 183 ~v~~lr~~~~D~IIvL~H~G~~~~~~~~---~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~ 259 (288)
T cd07412 183 VAPELKAGGVDAIVVLAHEGGSTKGGDD---TCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGS 259 (288)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCCCCCCc---cccccChhHHHHHhhcCCCCCEEEeCccCccccccccCcCCEEEEecCh
Confidence 3345665456789999998765432210 000011122334444 379999999999954 3 456777776655
Q ss_pred C
Q 022941 241 L 241 (289)
Q Consensus 241 ~ 241 (289)
-
T Consensus 260 ~ 260 (288)
T cd07412 260 Y 260 (288)
T ss_pred h
Confidence 4
No 67
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.34 E-value=1.1e-06 Score=81.93 Aligned_cols=70 Identities=4% Similarity=0.035 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCCCh--------hHHHHHHHHHHHHhhCCccEEEEcCCCCCCC--hhhh-h----hhccCCCCCCCeEEe
Q 022941 50 FYFISVTGGFRPLE--------QQTLLLKQMEDVAKSYDARFVINTSELGEDD--PLKQ-N----ATWLFPSLKVPWYTT 114 (289)
Q Consensus 50 ~~f~~~gD~~~g~~--------~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~--~~~~-~----~~~~~~~l~~P~~~v 114 (289)
+||++++|.|.|.. .+..+.+.+.+.+++.+||+||++||+.... +.+. . +...+..+++|++.+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 48999999776631 2344455666666778999999999985432 1121 1 112344567999999
Q ss_pred cCCCc
Q 022941 115 KASKE 119 (289)
Q Consensus 115 ~GNHD 119 (289)
+||||
T Consensus 81 ~GNHD 85 (407)
T PRK10966 81 AGNHD 85 (407)
T ss_pred cCCCC
Confidence 99999
No 68
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.33 E-value=6.9e-05 Score=66.55 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCe-EEEeCCCccce--ecCCCeEEEec
Q 022941 163 LLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVN-TYLSKHGCIKY--SRQDSITYMEN 238 (289)
Q Consensus 163 Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~-~vl~GH~H~~~--~~~~gi~~i~~ 238 (289)
+..|+.+.|++...+-+|++.|-........ ... ...+.++. ++| ++|+||.|... ...+++..+.+
T Consensus 175 ~~~~v~~~l~~~~~DvIIvlsH~G~~~d~~~------~~~---~~~la~~~~~id~~Ii~GHsH~~~~~~~~~~~~ivq~ 245 (282)
T cd07407 175 QEPWFQDAINNEDVDLILVLGHMPVRDDAEF------KVL---HDAIRKIFPDTPIQFLGGHSHVRDFTQYDSSSTGLES 245 (282)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCCCCCccH------HHH---HHHHHHhCCCCCEEEEeCCcccccceeccCcEEEEec
Confidence 3358888887556788999999887543211 111 11233444 577 79999999733 23356655554
Q ss_pred CC
Q 022941 239 PG 240 (289)
Q Consensus 239 g~ 240 (289)
|.
T Consensus 246 G~ 247 (282)
T cd07407 246 GR 247 (282)
T ss_pred cc
Confidence 44
No 69
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.32 E-value=9e-05 Score=72.05 Aligned_cols=174 Identities=10% Similarity=0.047 Sum_probs=84.7
Q ss_pred CCccEEEEEEeCCCCCCh-------hHHHHHHHHHHHHh---h-CCccEEEEcCCCCCCChh--h---hhhhccCCCCCC
Q 022941 46 KGLDFYFISVTGGFRPLE-------QQTLLLKQMEDVAK---S-YDARFVINTSELGEDDPL--K---QNATWLFPSLKV 109 (289)
Q Consensus 46 ~~~~~~f~~~gD~~~g~~-------~~~~~~~~l~~~~~---~-~~pdfvv~~GD~~~~~~~--~---~~~~~~~~~l~~ 109 (289)
...+++++.+.|.|.-.. .-.+++..+++.-+ + .+.-+++..||.....+. + +...+.+..++.
T Consensus 31 ~~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~ 110 (551)
T PRK09558 31 KTYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY 110 (551)
T ss_pred CceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC
Confidence 357899999999432111 12233344443321 1 234688999996432221 1 111234555554
Q ss_pred CeEEecCCCcCCCCce--------------eEe---------EeCC------CCCeEEEEEEcCCCccCC-CCCCCCC--
Q 022941 110 PWYTTKASKEKEVGCF--------------QEQ---------IRLP------HGEALDIIGVNTGSLQGK-IPTALPS-- 157 (289)
Q Consensus 110 P~~~v~GNHD~~~~~~--------------~~~---------~~~p------~~~~~~~i~lDt~~~~~~-~~~~~~~-- 157 (289)
- ..++||||+..|.- .+. +..| ++-.+-||++-+...... .+....+
T Consensus 111 D-a~tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~ 189 (551)
T PRK09558 111 D-AMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIE 189 (551)
T ss_pred C-EEcccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCce
Confidence 4 46679999654420 000 0011 133455666643321110 1110001
Q ss_pred -CcHHHHHHHHHHHHhh-cCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh---CCeEEEeCCCccc
Q 022941 158 -ASGDLLLNWLKSALEA-TNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF---GVNTYLSKHGCIK 226 (289)
Q Consensus 158 -~~~~~Ql~WL~~~L~~-~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~---~V~~vl~GH~H~~ 226 (289)
....+..+-+-++|++ ...+-+|++.|-........... .... ..+.++. +||++|.||.|..
T Consensus 190 f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~--~~~d----~~la~~~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 190 FRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSN--APGD----VEMARSLPAGGLDMIVGGHSQDP 257 (551)
T ss_pred ECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCC--CccH----HHHHHhCCccCceEEEeCCCCcc
Confidence 1223334444456664 35678999999887543221100 0000 2334444 7999999999974
No 70
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.25 E-value=3.3e-05 Score=74.06 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=46.7
Q ss_pred CCCccEEEEEEeCCCCCChh-HHHHHHHHHHHHh---------hCCccEEEEcCCCCCC-C--h-------------hhh
Q 022941 45 RKGLDFYFISVTGGFRPLEQ-QTLLLKQMEDVAK---------SYDARFVINTSELGED-D--P-------------LKQ 98 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~~-~~~~~~~l~~~~~---------~~~pdfvv~~GD~~~~-~--~-------------~~~ 98 (289)
....+.++++++|.|.|... .......+.++.+ ..+++.+|++||+... + + .++
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~ 318 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYE 318 (504)
T ss_pred cCCCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHH
Confidence 34567899999998776532 2222334444444 5679999999997431 0 0 011
Q ss_pred hhhccCCCC--CCCeEEecCCCcC
Q 022941 99 NATWLFPSL--KVPWYTTKASKEK 120 (289)
Q Consensus 99 ~~~~~~~~l--~~P~~~v~GNHD~ 120 (289)
...+.+..+ .+|++.+|||||.
T Consensus 319 ~l~~~L~~L~~~i~V~~ipGNHD~ 342 (504)
T PRK04036 319 AAAEYLKQIPEDIKIIISPGNHDA 342 (504)
T ss_pred HHHHHHHhhhcCCeEEEecCCCcc
Confidence 111233444 5799999999993
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.20 E-value=6.9e-05 Score=78.86 Aligned_cols=186 Identities=11% Similarity=0.071 Sum_probs=95.5
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEE-cCCCCCCChhh-----hhhhccCCCCCCCeEEecCCCc
Q 022941 46 KGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVIN-TSELGEDDPLK-----QNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 46 ~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~-~GD~~~~~~~~-----~~~~~~~~~l~~P~~~v~GNHD 119 (289)
...++++++++|.|.......+++..+.++. +.+|+.+++ +||........ +...+.+..++. -+.++||||
T Consensus 657 ~~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r-~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~-d~~~~GNHE 734 (1163)
T PRK09419 657 DNWELTILHTNDFHGHLDGAAKRVTKIKEVK-EENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGY-DASTFGNHE 734 (1163)
T ss_pred CceEEEEEEEeecccCCCCHHHHHHHHHHHH-hhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCC-CEEEecccc
Confidence 3467999999996532223344555555443 346777655 99974332211 112234455543 356999999
Q ss_pred CCCCc-----------------------e---eEeEe-----------CC------CCCeEEEEEEcCCCccC-CCCCCC
Q 022941 120 KEVGC-----------------------F---QEQIR-----------LP------HGEALDIIGVNTGSLQG-KIPTAL 155 (289)
Q Consensus 120 ~~~~~-----------------------~---~~~~~-----------~p------~~~~~~~i~lDt~~~~~-~~~~~~ 155 (289)
+..+. + .+.+. .| ++-.+-||++-+..... ..+...
T Consensus 735 fd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~ 814 (1163)
T PRK09419 735 FDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNV 814 (1163)
T ss_pred cccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCc
Confidence 54321 0 00000 01 12234556664432111 111100
Q ss_pred CC---CcHHHHHHHHHHHHhh-cCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ec
Q 022941 156 PS---ASGDLLLNWLKSALEA-TNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SR 229 (289)
Q Consensus 156 ~~---~~~~~Ql~WL~~~L~~-~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~ 229 (289)
.+ ....+..+-.-++|++ ...+.+|++.|.........+ .....++.++. +||++|.||.|... ..
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~--------~~~~~~lA~~v~gIDvIigGHsH~~~~~~ 886 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG--------EITGLELAKKVKGVDAIISAHTHTLVDKV 886 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccccc--------ccHHHHHHHhCCCCCEEEeCCCCcccccc
Confidence 01 1122223223345663 456789999999875432211 11233455544 79999999999955 44
Q ss_pred CCCeEEEecCCC
Q 022941 230 QDSITYMENPGL 241 (289)
Q Consensus 230 ~~gi~~i~~g~~ 241 (289)
.+++..+.+|+-
T Consensus 887 v~~~~ivqag~~ 898 (1163)
T PRK09419 887 VNGTPVVQAYKY 898 (1163)
T ss_pred CCCEEEEeCChh
Confidence 567766665543
No 72
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=98.18 E-value=3.4e-06 Score=77.69 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=64.3
Q ss_pred CeEEEEEEcCCCccCCCCC-------------CCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccc------
Q 022941 135 EALDIIGVNTGSLQGKIPT-------------ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEE------ 195 (289)
Q Consensus 135 ~~~~~i~lDt~~~~~~~~~-------------~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~------ 195 (289)
.-+.+.+||+..+....+. .....++++|.+||+..|.++++.|.|+..-.|+-.....+.
T Consensus 300 ~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~SkatWnVia~q~~~~~~~~d~~~a~~~~ 379 (522)
T COG3540 300 PLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKATWNVIAQQMPLGLVVFDGSPATEGQ 379 (522)
T ss_pred cccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcchhhhhhhhhcceeEeecCCCccccCc
Confidence 3457889999876621111 112367899999999999999999999988888743322110
Q ss_pred ------hhhHHhhHHHHHHHHHHhCCe--EEEeCCCccc
Q 022941 196 ------QLEAKKIYEPLHHIFMKFGVN--TYLSKHGCIK 226 (289)
Q Consensus 196 ------~~~~~~~~~~l~~ll~~~~V~--~vl~GH~H~~ 226 (289)
+.....-|++|+.+++..++. ++|.|.+|..
T Consensus 380 ~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~ 418 (522)
T COG3540 380 EANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYS 418 (522)
T ss_pred cccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHH
Confidence 011223478999999999765 8899999983
No 73
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.17 E-value=0.00024 Score=74.84 Aligned_cols=53 Identities=6% Similarity=0.087 Sum_probs=33.9
Q ss_pred HHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 169 SALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 169 ~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
.+|++...+-+|++.|-......... ...+...++.++. +||+++.||.|...
T Consensus 228 ~~lk~~gaDvII~l~H~G~~~~~~~~------~~en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 228 PEMKKGGADVIVALAHSGIESEYQSS------GAEDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred HHHHhcCCCEEEEEeccCcCCCCCCC------CcchHHHHHHHhCCCCcEEEeCCCcccc
Confidence 45665567889999998875432210 1112234455454 89999999999954
No 74
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.16 E-value=7.8e-07 Score=75.53 Aligned_cols=140 Identities=12% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCccEEEEcCCCCCCChhhhhhhccC-------CCCCCCeEEecCCCcCCCCceeEeEeCCCCCeEEEEEEcCCCccCCC
Q 022941 79 YDARFVINTSELGEDDPLKQNATWLF-------PSLKVPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGKI 151 (289)
Q Consensus 79 ~~pdfvv~~GD~~~~~~~~~~~~~~~-------~~l~~P~~~v~GNHD~~~~~~~~~~~~p~~~~~~~i~lDt~~~~~~~ 151 (289)
.+.|.++++||+...++.-.+..+.+ ...+.+++.++||||... ....+........ ..........
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~--l~~~~~~~~~~~~----~~~~~~~~~~ 104 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELMN--LCGDFRYVHPKYF----NEFGGLAMRR 104 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHH--HcchhccCChhHH----HHHHhhhhhH
Confidence 46899999999865443222222221 223578999999999321 1111111100000 0000000000
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccc--cccch-hhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 152 PTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE--EHEEQ-LEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 152 ~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~--~~~~~-~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
........+..+||++.--...- ..++|.|--+.+.. ..... ....+-...+..+|+..+.+++++||+|...
T Consensus 105 --~~~~~~~~~~~~~L~~lP~~~~~-~~~~fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 105 --RELFSPGGELGRWLRSKPVIVKV-NDTLFVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEG 180 (208)
T ss_pred --HHhcCCccHHHHHHHhCCeEEEE-CCEEEEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeec
Confidence 00001223446787642111111 13667787441111 01000 0000001246678888999999999999854
No 75
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.16 E-value=0.00011 Score=64.41 Aligned_cols=175 Identities=11% Similarity=0.087 Sum_probs=94.7
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh-hhhhhhccCCCCCCCeEEecCCCcCCCCcee--
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP-LKQNATWLFPSLKVPWYTTKASKEKEVGCFQ-- 126 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~-~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~-- 126 (289)
.|++++||. .|......+.+.+.++.++.++||+|..||+...+. .-+..++.+..+++-++.+ |||.+..+...
T Consensus 1 m~ilfiGDi-~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~~ 78 (266)
T TIGR00282 1 IKFLFIGDV-YGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQKLILDV 78 (266)
T ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCcHHHHH
Confidence 378999992 233334556666777777788999999999854321 1122234445556666666 99995444321
Q ss_pred ----EeE----eCCC---CCeEEE----------EEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeec
Q 022941 127 ----EQI----RLPH---GEALDI----------IGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFH 185 (289)
Q Consensus 127 ----~~~----~~p~---~~~~~~----------i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~Hh 185 (289)
.+. ..|. +.++.+ +.+-...+...+. .. ..-+..+.+-+.+++ +.+.+||.+|-
T Consensus 79 i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~---~~-~Pf~~~d~~i~~lk~-~~d~IIVd~Ha 153 (266)
T TIGR00282 79 VINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFK---TT-NPFKVLKELINMLKK-DCDLIFVDFHA 153 (266)
T ss_pred HhccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccc---cC-CHHHHHHHHHHhhhc-CCCEEEEEeCC
Confidence 111 2221 112222 2221111111110 11 111222223223443 24688888985
Q ss_pred cccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce---ec-CCCeEEEecCCCCCC
Q 022941 186 PLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY---SR-QDSITYMENPGLIES 244 (289)
Q Consensus 186 P~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~---~~-~~gi~~i~~g~~~~~ 244 (289)
-.-+ .+.....+-+-+|++|+.-|.|.+- +- .+|+-|++--+.+++
T Consensus 154 eats-------------EK~a~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayitD~Gm~G~ 203 (266)
T TIGR00282 154 ETTS-------------EKNAFGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTGP 203 (266)
T ss_pred CCHH-------------HHHHHHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEecCCcccC
Confidence 4311 1233455666799999999999975 22 478999987665554
No 76
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.16 E-value=0.00024 Score=68.52 Aligned_cols=201 Identities=12% Similarity=0.149 Sum_probs=101.3
Q ss_pred CCCCccEEEEEEeCCCCCCh------------hHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh------hhhhhhccCC
Q 022941 44 NRKGLDFYFISVTGGFRPLE------------QQTLLLKQMEDVAKSYDARFVINTSELGEDDP------LKQNATWLFP 105 (289)
Q Consensus 44 ~~~~~~~~f~~~gD~~~g~~------------~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~------~~~~~~~~~~ 105 (289)
.....+++++...|.|.... ...+++..+++.-++.+..++|.+||+....+ ..+...+.+.
T Consensus 21 ~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN 100 (517)
T COG0737 21 AAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLN 100 (517)
T ss_pred ccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHh
Confidence 45689999999999443221 22234444444444455678999999643211 1111223444
Q ss_pred CCCCCeEEecCCCcCCCCc--e------------eEeE----------eCC------CCCeEEEEEEcCCCccC-CCCCC
Q 022941 106 SLKVPWYTTKASKEKEVGC--F------------QEQI----------RLP------HGEALDIIGVNTGSLQG-KIPTA 154 (289)
Q Consensus 106 ~l~~P~~~v~GNHD~~~~~--~------------~~~~----------~~p------~~~~~~~i~lDt~~~~~-~~~~~ 154 (289)
.++.- +.++||||+..|. + .+.+ .-| .+-.+-+|++.+..... ..+..
T Consensus 101 ~m~yD-a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~ 179 (517)
T COG0737 101 ALGYD-AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNA 179 (517)
T ss_pred hcCCc-EEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccc
Confidence 44322 6899999965542 0 0111 111 12345667766422211 11110
Q ss_pred CCC---CcHHHHH-HHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce--e
Q 022941 155 LPS---ASGDLLL-NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY--S 228 (289)
Q Consensus 155 ~~~---~~~~~Ql-~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~--~ 228 (289)
..+ ....+.+ +|+. +|++...+-+|++.|-+........... ..... ... .++|+++.||.|... .
T Consensus 180 ~~~~~f~d~~e~~~~~i~-elk~~~vD~iI~LsH~G~~~d~~~~~~~--~~~~~----~~~-~~iD~i~~GH~H~~~~~~ 251 (517)
T COG0737 180 IEGVTFRDPIEAAKKYIP-ELKGEGVDVIIALSHLGIEDDLELASEV--PGDVD----VAV-PGIDLIIGGHSHTVFPGG 251 (517)
T ss_pred cCCcEEcCHHHHHHHHHH-HHHhcCCCEEEEEeccCcCccccccccc--ccccc----ccc-cCcceEeccCCcccccCC
Confidence 111 1222222 3333 4554336789999999987654431100 00000 000 349999999999743 2
Q ss_pred ----cCCCeEEEecCCCCCCCCCcccCCcEEEEEEe
Q 022941 229 ----RQDSITYMENPGLIESGNGREMVDGFLLHKVS 260 (289)
Q Consensus 229 ----~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~ 260 (289)
..+++..+.+|.-++ .-|..-++++
T Consensus 252 ~~~~~~~~t~ivqag~~gk-------~vG~~di~~d 280 (517)
T COG0737 252 DKPGTVNGTPIVQAGEYGK-------YVGVLDITFD 280 (517)
T ss_pred cccCccCCEEEEccChhhC-------ceeEEEEEEc
Confidence 235666665554433 3555555555
No 77
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.15 E-value=0.00028 Score=62.81 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 165 NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 165 ~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
+|++ +|++...+-+|++.|-........... ... ...+.+.+...+||++|.||.|...
T Consensus 164 ~~v~-~lk~~~~D~VI~lsH~G~~~~~~~~~~--~~~-~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 164 EVVP-ELKQEKPDIVIAATHMGHYDNGEHGSN--APG-DVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred HHHH-HHHHcCCCEEEEEecccccCCcccccc--Cch-HHHHHHhcCCCCCCEEEeCCCCccc
Confidence 4443 466545678999999887543321100 000 0122222222489999999999843
No 78
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.12 E-value=5.1e-05 Score=60.07 Aligned_cols=113 Identities=6% Similarity=0.044 Sum_probs=63.1
Q ss_pred HHHHHhhCCc-cEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcCCCCceeEeEeCCCCCeEEEEEEcCCCccCC
Q 022941 72 MEDVAKSYDA-RFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGK 150 (289)
Q Consensus 72 l~~~~~~~~p-dfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~~~~~~p~~~~~~~i~lDt~~~~~~ 150 (289)
+..+.+..+| |.+.++||++.....-+.+-++++.|+.....|+|||| ..+...+. .+.|+.
T Consensus 36 l~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GNhD-k~~~~~~~-----------~~~~sv----- 98 (186)
T COG4186 36 LSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGNHD-KCHPMYRH-----------AYFDSV----- 98 (186)
T ss_pred HHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCCCC-CCcccccc-----------hhhHHH-----
Confidence 3445555566 68889999854221112223466778777899999999 22211100 001111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 151 IPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 151 ~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
+-++ .++ . +...|+++|.|..+....+ .+ ....-.+.++++.|.||.|.+.
T Consensus 99 -----------q~f~----~ie-~-dg~~~~LsHyP~~~~~~~~-----~~----~r~~y~~~~~~llIHGH~H~~~ 149 (186)
T COG4186 99 -----------QAFQ----RIE-W-DGEDVYLSHYPRPGQDHPG-----ME----SRFDYLRLRVPLLIHGHLHSQF 149 (186)
T ss_pred -----------HHHH----hee-E-CCeEEEEEeCCCCCCCCcc-----hh----hhHHHHhccCCeEEeccccccc
Confidence 0011 111 1 3468999999986654331 11 1122234479999999999965
No 79
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.05 E-value=2.9e-05 Score=62.31 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=39.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH-hhCCccEEEEcCCCC-CC--ChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVA-KSYDARFVINTSELG-ED--DPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~-~~~~pdfvv~~GD~~-~~--~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
+|+||.+. .-..+.+.++++. ++.++|++|++||.- .. +..|...+.--...++|.|.+-|||+
T Consensus 1 LV~G~~~G---~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNG---RLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCc---cHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 36788432 2244455555543 345789999999963 22 12333333333456889999999997
No 80
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.02 E-value=0.0015 Score=65.60 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 165 NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 165 ~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
+|+. +|++...+-+|++.|-.+...... ...+. ... .+++. +||++|.||.|... ...+++..+.+|.-
T Consensus 235 ~~v~-~Lr~~GaDvIIaLsH~G~~~d~~~----~~~en--a~~-~l~~v~gID~IlgGHsH~~~~~~ingv~vvqaG~~ 305 (780)
T PRK09418 235 KMVP-KMKAEGADVIVALAHSGVDKSGYN----VGMEN--ASY-YLTEVPGVDAVLMGHSHTEVKDVFNGVPVVMPGVF 305 (780)
T ss_pred HHHH-HHHhcCCCEEEEEeccCccccccc----ccchh--hhH-HHhcCCCCCEEEECCCCCcccccCCCEEEEEcChh
Confidence 4444 566556788999999887543211 00111 111 13444 89999999999965 45567776665543
No 81
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.98 E-value=0.00014 Score=66.70 Aligned_cols=102 Identities=9% Similarity=-0.038 Sum_probs=59.8
Q ss_pred CccEEEEEEeCCC-CCC----hhHHHH---------HHHHHHHHhhCCccEEEEcCCCCC-----CChhhhhhhc----c
Q 022941 47 GLDFYFISVTGGF-RPL----EQQTLL---------LKQMEDVAKSYDARFVINTSELGE-----DDPLKQNATW----L 103 (289)
Q Consensus 47 ~~~~~f~~~gD~~-~g~----~~~~~~---------~~~l~~~~~~~~pdfvv~~GD~~~-----~~~~~~~~~~----~ 103 (289)
+..++.+.++|.+ .|. ..-..+ .+.......-.+||.+++.||+-. ++++|++.++ +
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 6889999999932 221 000111 111222223479999999999732 3557766653 4
Q ss_pred C-CCCCCCeEEecCCCcCCCCce-----eEeE---eC-----CCCCeEEEEEEcCCCcc
Q 022941 104 F-PSLKVPWYTTKASKEKEVGCF-----QEQI---RL-----PHGEALDIIGVNTGSLQ 148 (289)
Q Consensus 104 ~-~~l~~P~~~v~GNHD~~~~~~-----~~~~---~~-----p~~~~~~~i~lDt~~~~ 148 (289)
| ....+|...+|||||.-.++- -.+| +- .+.++..|+++|+....
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~~r~f~v~~~tf~~~d~~~ls 184 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPTERRFDVGNLTFVMFDSNALS 184 (410)
T ss_pred hCCCCCCeeEEeCCccccccccccchhHHHHHHHhhcchhhhhccCCceeEEeeehhhc
Confidence 4 335899999999999322220 0111 11 13466778888887654
No 82
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.96 E-value=0.00087 Score=59.56 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 170 ALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 170 ~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
+|++...+-+|++.|-.... + . .+.++. +||++++||.|...
T Consensus 177 ~lr~~~~D~II~l~H~G~~~--------d-~-------~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 177 KLKAQGVNKIIALSHSGYEV--------D-K-------EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHhcCCCEEEEEeccCchh--------H-H-------HHHHcCCCCcEEEeCCcCccc
Confidence 45544567889999986421 0 1 233333 79999999999943
No 83
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.94 E-value=2.1e-05 Score=64.71 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCccEEEEcCCCCCCC--hhhhhhh----ccCCCCCCCeEEecCCCc
Q 022941 67 LLLKQMEDVAKSYDARFVINTSELGEDD--PLKQNAT----WLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 67 ~~~~~l~~~~~~~~pdfvv~~GD~~~~~--~~~~~~~----~~~~~l~~P~~~v~GNHD 119 (289)
+..+.+.+..++.+||.|+++||+.... ..+.... ......++|++.++||||
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD 86 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHD 86 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCc
Confidence 4556666677778999999999985321 1111111 112345789999999999
No 84
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.86 E-value=2.9e-05 Score=66.61 Aligned_cols=70 Identities=7% Similarity=-0.038 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCCChh-------------HHHHHHHHHHHHhhCCccEEEEcCCCCCCC---hhhhhhhccCCCCCCCeEE
Q 022941 50 FYFISVTGGFRPLEQ-------------QTLLLKQMEDVAKSYDARFVINTSELGEDD---PLKQNATWLFPSLKVPWYT 113 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~-------------~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~---~~~~~~~~~~~~l~~P~~~ 113 (289)
-+-++++|.|.|... ..+..+.+.+..++.+||.||++||+.... ..+++..+.++.+..|++.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~ 94 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLIL 94 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEE
Confidence 346789997766422 123444555556677899999999985321 2344333445556679999
Q ss_pred ecCCCc
Q 022941 114 TKASKE 119 (289)
Q Consensus 114 v~GNHD 119 (289)
++||||
T Consensus 95 V~GNHD 100 (225)
T TIGR00024 95 IRGNHD 100 (225)
T ss_pred ECCCCC
Confidence 999999
No 85
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.75 E-value=3.8e-05 Score=67.83 Aligned_cols=67 Identities=10% Similarity=-0.044 Sum_probs=43.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (289)
+.+++||.|.. -..+.+.+.++.-..++|.++++||+...++.-.+..+.+.+++.++++|+||||.
T Consensus 2 ~~~vIGDIHG~---~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 2 ATYAIGDIQGC---YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDL 68 (275)
T ss_pred cEEEEEccCCC---HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhH
Confidence 46899997642 23333344433212468999999998765553334444444556678999999993
No 86
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.75 E-value=0.003 Score=62.36 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 165 NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 165 ~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
+|.. +|++...+-+|++.|-......... ..+.....+++. +||++++||.|...
T Consensus 186 ~~v~-~Lr~~gaDvII~LsH~G~~~d~~~~-------~~en~~~~l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 186 KYVP-EMKAKGADIIVALAHSGISADPYQP-------GAENSAYYLTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred HHHH-HHHHcCCCEEEEEeccCcCCCcccc-------ccchHHHHHhcCCCCCEEEcCCCCccC
Confidence 4443 5666557889999998875432110 000111124444 89999999999954
No 87
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.72 E-value=0.00084 Score=65.26 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhCCccEEEEcCCCCCCChhh-----hhhhccCCCCCCCeEEecCCCcCCCCc--e------------eEe
Q 022941 68 LLKQMEDVAKSYDARFVINTSELGEDDPLK-----QNATWLFPSLKVPWYTTKASKEKEVGC--F------------QEQ 128 (289)
Q Consensus 68 ~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~-----~~~~~~~~~l~~P~~~v~GNHD~~~~~--~------------~~~ 128 (289)
++..+++.-++.+..+++..||.....+.. +...+.+..++.- ..++||||+..|. + .+.
T Consensus 37 l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g~D-a~~lGNHEFd~G~~~l~~~~~~~~fp~l~aN 115 (550)
T TIGR01530 37 LNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAAGFD-FFTLGNHEFDAGNEGLKEFLEPLEIPVLSAN 115 (550)
T ss_pred HHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhccCCC-EEEeccccccCCHHHHHHHHHhCCCCEEEEe
Confidence 344444443344456899999974332211 1112334444332 6899999964442 0 011
Q ss_pred E-----------eCC------CCCeEEEEEEcCCCccC--CCCCCCCC-CcHHHHHHHHHHHHhhcCCCeEEEEeecccc
Q 022941 129 I-----------RLP------HGEALDIIGVNTGSLQG--KIPTALPS-ASGDLLLNWLKSALEATNGQWCIVVGFHPLV 188 (289)
Q Consensus 129 ~-----------~~p------~~~~~~~i~lDt~~~~~--~~~~~~~~-~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~ 188 (289)
+ ..| ++-.+-||++.+..... ..+..... ...-+-.+-.-++|++...+-+|++.|-...
T Consensus 116 v~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 116 VIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAGFE 195 (550)
T ss_pred eecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcH
Confidence 1 011 23446678886532111 11110000 1111222223345665556788999997531
Q ss_pred ccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 189 ICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
. + . .+.++. +||++|+||.|...
T Consensus 196 ~--------d-~-------~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 196 K--------N-C-------EIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred H--------H-H-------HHHhcCCCCCEEEeCCCCccc
Confidence 1 1 1 233433 79999999999953
No 88
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.64 E-value=0.01 Score=58.80 Aligned_cols=53 Identities=4% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 168 KSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 168 ~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
-.+|++...+-+|++.|-.+...... ...+ +.... +.+. +||+++.||.|...
T Consensus 211 v~~Lk~~gaDvII~LsH~G~~~d~~~----~~ae--n~~~~-l~~v~gID~Il~GHsH~~~ 264 (649)
T PRK09420 211 VPEMKEKGADIVVAIPHSGISADPYK----AMAE--NSVYY-LSEVPGIDAIMFGHSHAVF 264 (649)
T ss_pred HHHHHHcCCCEEEEEecCCcCCCCcc----cccc--chhHH-HhcCCCCCEEEeCCCCccC
Confidence 34577656788999999887432211 0000 11112 3443 79999999999843
No 89
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.002 Score=61.44 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeE-EEeCCCccc
Q 022941 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNT-YLSKHGCIK 226 (289)
Q Consensus 162 ~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~-vl~GH~H~~ 226 (289)
.|.+|-.+.++...-+-+|+++|-|.-.... ..-....+.+.+ +++. ||-||.|..
T Consensus 212 ~~~~~~~~m~~~~~idlii~lgH~~~~~~~e---------~~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 212 TQSEWEQDMVNTTDIDLIIALGHSPVRDDDE---------WKSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred hccchHHHHhhccCccEEEEecccccccchh---------hhhHHHHHhhhCCCCceEEECchhhhh
Confidence 4778887777765557788899988743322 111233344444 6777 999999984
No 90
>PHA02239 putative protein phosphatase
Probab=97.62 E-value=9.2e-05 Score=63.98 Aligned_cols=67 Identities=9% Similarity=-0.005 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhC-CccEEEEcCCCCCCChhhhhhhccC-C--CCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSY-DARFVINTSELGEDDPLKQNATWLF-P--SLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~-~pdfvv~~GD~~~~~~~~~~~~~~~-~--~l~~P~~~v~GNHD~ 120 (289)
+++++||.| |.. ..+.+.+.++.... +.|.++++||+...++...+..+.+ + .-..++++++||||.
T Consensus 2 ~~~~IsDIH-G~~--~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 2 AIYVVPDIH-GEY--QKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDD 72 (235)
T ss_pred eEEEEECCC-CCH--HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHH
Confidence 679999977 332 33444444443333 3599999999876554333333321 1 124578999999993
No 91
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.62 E-value=9.4e-05 Score=62.66 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
|++++||.|. . -.++.+.+..+....++|.++++||+...++.-.+..+.+.. .+++.++||||
T Consensus 2 ri~~isDiHg-~--~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe 65 (207)
T cd07424 2 RDFVVGDIHG-H--YSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHE 65 (207)
T ss_pred CEEEEECCCC-C--HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCCh
Confidence 5789999773 2 233333333322224689999999986544432333333332 35799999999
No 92
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.56 E-value=0.00013 Score=63.34 Aligned_cols=29 Identities=3% Similarity=-0.111 Sum_probs=22.8
Q ss_pred CCeEEEeCCCccce-ecCCCeEEEecCCCC
Q 022941 214 GVNTYLSKHGCIKY-SRQDSITYMENPGLI 242 (289)
Q Consensus 214 ~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~ 242 (289)
..+++|+||.|.+. ...+++.++..|+-.
T Consensus 191 ~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~ 220 (243)
T cd07386 191 VPDILHTGHVHVYGVGVYRGVLLVNSGTWQ 220 (243)
T ss_pred CCCEEEECCCCchHhEEECCEEEEECCCCc
Confidence 46899999999965 556788888877753
No 93
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.54 E-value=0.0069 Score=54.68 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHh-CCeEEEeCCCccce
Q 022941 167 LKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVNTYLSKHGCIKY 227 (289)
Q Consensus 167 L~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~-~V~~vl~GH~H~~~ 227 (289)
.-++|++...+-+|++.|---+.. + ..+.++. +||++|.||.|...
T Consensus 199 ~v~~Lr~~gvD~II~LsH~g~~~~-------d--------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 199 SIDALTAQGINKIILLSHLQQISI-------E--------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred HHHHHHHCCCCEEEEEecccccch-------H--------HHHHhcCCCCCEEEeCCCCccC
Confidence 344555555678899999731110 1 1244444 79999999999853
No 94
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.52 E-value=0.00013 Score=63.77 Aligned_cols=65 Identities=11% Similarity=-0.031 Sum_probs=41.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcC
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (289)
.+|||.|.. -.++.+.+.++.-..+.|.++++||+...++.-.+..+.+.+++..+..|+||||.
T Consensus 2 yvIGDIHG~---~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~ 66 (257)
T cd07422 2 YAIGDIQGC---YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDL 66 (257)
T ss_pred EEEECCCCC---HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchH
Confidence 579997642 23333344443323467999999999776654344445445555678999999993
No 95
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.46 E-value=0.017 Score=58.37 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=31.7
Q ss_pred HHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 168 KSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 168 ~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
-.+|++...+-+|++.|--+....... + .+ +.-..+.+--+||+++.||.|...
T Consensus 302 v~~Lr~~GaDvIIaLsH~G~~~d~~~~--~--~E--n~~~~LA~v~GIDaIvgGHsH~~~ 355 (814)
T PRK11907 302 IPTMRAAGADIVLVLSHSGIGDDQYEV--G--EE--NVGYQIASLSGVDAVVTGHSHAEF 355 (814)
T ss_pred HHHHHhcCCCEEEEEeCCCcccccccc--c--cc--chhhHHhcCCCCCEEEECCCCCcc
Confidence 335665557889999998764332110 0 01 111223222389999999999954
No 96
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.34 E-value=0.00026 Score=60.51 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (289)
+++++||.|. .-.++.+.++++....+.|-++++||+...++.-.+..+.+.+. .+++++||||.
T Consensus 18 ri~vigDIHG---~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~--~~~~v~GNHE~ 82 (218)
T PRK11439 18 HIWLVGDIHG---CFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH--WVRAVRGNHEQ 82 (218)
T ss_pred eEEEEEcccC---CHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC--CceEeeCchHH
Confidence 7899999764 22334444444422336799999999876655333334433332 35799999993
No 97
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=97.34 E-value=0.0094 Score=56.27 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=31.8
Q ss_pred CccEEEEEEeCCCCCChh--------HHHHHHHHHHHHhhCCccEEEEcCCC
Q 022941 47 GLDFYFISVTGGFRPLEQ--------QTLLLKQMEDVAKSYDARFVINTSEL 90 (289)
Q Consensus 47 ~~~~~f~~~gD~~~g~~~--------~~~~~~~l~~~~~~~~pdfvv~~GD~ 90 (289)
+..+|+++.+|.|.|.-. .-...+.+..++...+.|+|+..||+
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDL 62 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDL 62 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcc
Confidence 688999999997665411 11223344556778899999999996
No 98
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0037 Score=49.20 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHhCCeEEEeCCCccce-ecCCCeEEEecCCCCCCCCC---cccCCcEEEEEEeCcEEEEEEEc-CCCcEEEEEEEe
Q 022941 208 HIFMKFGVNTYLSKHGCIKY-SRQDSITYMENPGLIESGNG---REMVDGFLLHKVSSLEILTYFVT-LEGEVVYRTATR 282 (289)
Q Consensus 208 ~ll~~~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~~~~~~g---~~~~~gf~~v~v~~~~i~~~~~~-~~g~~~~~~~i~ 282 (289)
-+-++..||..+.||+|... .+.+|--|+..|+..+..+- ....++|.++++.++.+....|. .+|++--..-.+
T Consensus 101 ~LaRqldvDILl~G~Th~f~Aye~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v~YvY~lidgeVkVdki~y 180 (183)
T KOG3325|consen 101 LLARQLDVDILLTGHTHKFEAYEHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVVTYVYRLIDGEVKVDKIEY 180 (183)
T ss_pred HHHHhcCCcEEEeCCceeEEEEEeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEEEEEeeeeCCcEEEEEEEe
Confidence 34456699999999999955 56677777777765444221 23689999999999998888877 688884444344
Q ss_pred cC
Q 022941 283 ER 284 (289)
Q Consensus 283 ~~ 284 (289)
|+
T Consensus 181 kK 182 (183)
T KOG3325|consen 181 KK 182 (183)
T ss_pred cC
Confidence 43
No 99
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.26 E-value=0.0004 Score=59.39 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
|++++||.|. +-.++.+.++++.-..+.|.++++||+...++.-.+..+.+.. -.++.+.||||
T Consensus 16 ri~visDiHg---~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE 79 (218)
T PRK09968 16 HIWVVGDIHG---EYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHE 79 (218)
T ss_pred eEEEEEeccC---CHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchH
Confidence 8999999764 2233333333332134689999999987655432333333322 24689999999
No 100
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.16 E-value=0.00052 Score=60.43 Aligned_cols=66 Identities=12% Similarity=-0.069 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
+..+|||.|. .-.++.+.+.++.-..+.|-++++||+...++.-.+..+.+.+++..+..|.||||
T Consensus 2 ~~YvIGDIHG---c~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD 67 (279)
T TIGR00668 2 ATYLIGDLHG---CYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHD 67 (279)
T ss_pred cEEEEEcccC---CHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhH
Confidence 3578999664 22334444444432345789999999977665433444444445445679999999
No 101
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.98 E-value=0.00044 Score=59.73 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHH---hh------CCccEEEEcCCCCCCChhhhhhhccCCCC--CCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVA---KS------YDARFVINTSELGEDDPLKQNATWLFPSL--KVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~---~~------~~pdfvv~~GD~~~~~~~~~~~~~~~~~l--~~P~~~v~GNHD 119 (289)
+++++||.|.- -.++.+.+.++. ++ .+.|.++++||+...++.-.+..+.+..+ +..++++.||||
T Consensus 2 ~i~vigDIHG~---~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 2 PFDIIGDVHGC---YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CeEEEEECCCC---HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcH
Confidence 68899997652 233333444331 11 13689999999876555433444433222 235789999999
Q ss_pred C
Q 022941 120 K 120 (289)
Q Consensus 120 ~ 120 (289)
.
T Consensus 79 ~ 79 (234)
T cd07423 79 N 79 (234)
T ss_pred H
Confidence 3
No 102
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.94 E-value=0.0015 Score=57.94 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=37.8
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhh-----CCccEEEEcCCCCCCChhhhhhhccCCCC-----CCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKS-----YDARFVINTSELGEDDPLKQNATWLFPSL-----KVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~-----~~pdfvv~~GD~~~~~~~~~~~~~~~~~l-----~~P~~~v~GNHD 119 (289)
+++++||.|.-.. .+.+.+..+... ...+.+|++||+...++.-.+..+.+..+ ...+++++||||
T Consensus 3 ~iyaIGDIHG~~d---~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE 78 (304)
T cd07421 3 VVICVGDIHGYIS---KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHD 78 (304)
T ss_pred eEEEEEeccCCHH---HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCCh
Confidence 6889999764222 222333333222 23578999999876555333333322111 125789999999
No 103
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.92 E-value=0.00079 Score=57.43 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=38.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCC---CCCeEEecCCCcC
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL---KVPWYTTKASKEK 120 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l---~~P~~~v~GNHD~ 120 (289)
+++||.|. . -..+.+.+..+ ...++|.+|++||+...++...+..+.+..+ +.+++.+.||||.
T Consensus 1 ~~igDiHg-~--~~~l~~~l~~~-~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 1 YVIGDIHG-C--LDDLLRLLEKI-GFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHED 67 (225)
T ss_pred CEEeCCCC-C--HHHHHHHHHHh-CCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchh
Confidence 37899773 2 22333334333 2357899999999865444333333222222 4588999999993
No 104
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.89 E-value=0.0011 Score=56.91 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=38.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHhh-------CCccEEEEcCCCCCCChhhhhhhccCCCC--CCCeEEecCCCcC
Q 022941 52 FISVTGGFRPLEQQTLLLKQMEDVAKS-------YDARFVINTSELGEDDPLKQNATWLFPSL--KVPWYTTKASKEK 120 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~~~~l~~~~~~-------~~pdfvv~~GD~~~~~~~~~~~~~~~~~l--~~P~~~v~GNHD~ 120 (289)
+.+|||.|- .-..+.+.+.++... ...|.+|++||+...++.-.+..+.+.++ +-.++++.||||.
T Consensus 1 ~~vIGDIHG---~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~ 75 (222)
T cd07413 1 YDFIGDIHG---HAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEF 75 (222)
T ss_pred CEEEEeccC---CHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcH
Confidence 468999664 223333344433211 14589999999876555333333333222 2358899999993
No 105
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.83 E-value=0.0012 Score=57.47 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhh--------CCccEEEEcCCCCCCChhhhhhhccCCC--CCCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKS--------YDARFVINTSELGEDDPLKQNATWLFPS--LKVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~--------~~pdfvv~~GD~~~~~~~~~~~~~~~~~--l~~P~~~v~GNHD 119 (289)
++.++||.|- . -..+.+.+.++.-. ..-|-++++||+...++.=.+..+.+.. ...+++++.||||
T Consensus 2 ~~~vIGDIHG-~--~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 2 KYDIIGDIHG-C--YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred ceEEEEECcc-C--HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccH
Confidence 5789999763 2 22333334332111 1347899999987655432233332111 1347899999999
No 106
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.81 E-value=0.0025 Score=54.49 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=44.9
Q ss_pred ccEEEEEEeCCCCCCh-------------hHHHHHHHHHHHHhhCCccEEEEcCCCCCCC--hhhhhhhc---cCCCCCC
Q 022941 48 LDFYFISVTGGFRPLE-------------QQTLLLKQMEDVAKSYDARFVINTSELGEDD--PLKQNATW---LFPSLKV 109 (289)
Q Consensus 48 ~~~~f~~~gD~~~g~~-------------~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~--~~~~~~~~---~~~~l~~ 109 (289)
..-+-++++|.|.|.. ...++.+.+.++....+|+-+|+.||+-.+- ..+++..+ ..+.+.-
T Consensus 18 ~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~ 97 (235)
T COG1407 18 PLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE 97 (235)
T ss_pred ccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhcc
Confidence 3446789999665532 2234555667778889999999999974321 12333321 1122211
Q ss_pred -CeEEecCCCc
Q 022941 110 -PWYTTKASKE 119 (289)
Q Consensus 110 -P~~~v~GNHD 119 (289)
-+..++||||
T Consensus 98 ~evi~i~GNHD 108 (235)
T COG1407 98 REVIIIRGNHD 108 (235)
T ss_pred CcEEEEeccCC
Confidence 4899999999
No 107
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.74 E-value=0.3 Score=41.99 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=88.9
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh--hhhhhhccCCCCCCCeEEecCCCcCCCCce--
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEVGCF-- 125 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~--~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~-- 125 (289)
.|++++||. .|...-..+.+.+..+.++.++||||..|-++..+. .++ .++.+.+.++- +.+.|||=+.....
T Consensus 1 mriLfiGDv-vGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k-~y~~l~~~G~d-viT~GNH~wd~~ei~~ 77 (266)
T COG1692 1 MRILFIGDV-VGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEK-IYKELLEAGAD-VITLGNHTWDQKEILD 77 (266)
T ss_pred CeEEEEecc-cCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHH-HHHHHHHhCCC-EEecccccccchHHHH
Confidence 478999992 233344566667777777889999999999865432 222 22222222333 57899999322211
Q ss_pred ----eEeE----eCCC---CCeEEEEEEcCCC----------ccCCCCCCCCCCcHHHHHHHHHHHHhhcCC--CeEEEE
Q 022941 126 ----QEQI----RLPH---GEALDIIGVNTGS----------LQGKIPTALPSASGDLLLNWLKSALEATNG--QWCIVV 182 (289)
Q Consensus 126 ----~~~~----~~p~---~~~~~~i~lDt~~----------~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~--~~~iV~ 182 (289)
..++ +.|+ +.+..++-.+..- +.....+.| ..-+++.+...+. +.+||=
T Consensus 78 ~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~P--------F~~~d~l~~~~~~~~~~iiVD 149 (266)
T COG1692 78 FIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNP--------FKAADKLLDEIKLGTDLIIVD 149 (266)
T ss_pred HhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCH--------HHHHHHHHHhCccCCceEEEE
Confidence 1111 2332 2333333332211 111111111 2224445554443 366666
Q ss_pred eeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce----ecCCCeEEEecCCCCCC
Q 022941 183 GFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY----SRQDSITYMENPGLIES 244 (289)
Q Consensus 183 ~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~----~~~~gi~~i~~g~~~~~ 244 (289)
+|--.-+ ... + +-..-+-.|.+++-=|+|.+. .-.+|+-|++--+.+++
T Consensus 150 FHAEtTS-EK~-------a-----~g~yldGrvsavvGTHTHV~TaD~rIL~~GTayiTDvGMtG~ 202 (266)
T COG1692 150 FHAETTS-EKN-------A-----FGWYLDGRVSAVVGTHTHVPTADERILPKGTAYITDVGMTGP 202 (266)
T ss_pred ccccchh-hhh-------h-----hheEEcCeEEEEEeccCccccccceecCCCcEEEecCccccc
Confidence 7643211 100 0 011223368999999999965 23578999987665544
No 108
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.58 E-value=0.14 Score=44.27 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 164 LNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 164 l~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
.++++ +|++. .+.+||..|-..-.... . ......+...+.+.++|+++.||.|...
T Consensus 165 ~~~i~-~lr~~-~D~vIv~~H~G~e~~~~-----p-~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 165 AADIA-EAKKK-ADIVIVSLHWGVEYSYY-----P-TPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred HHHHH-HHhhc-CCEEEEEecCcccCCCC-----C-CHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 34443 34433 67899999964422111 1 1112334445556799999999999843
No 109
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=95.88 E-value=0.092 Score=44.79 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHhC--CeEEEeCCCccce
Q 022941 201 KIYEPLHHIFMKFG--VNTYLSKHGCIKY 227 (289)
Q Consensus 201 ~~~~~l~~ll~~~~--V~~vl~GH~H~~~ 227 (289)
.-+++++.++.+.+ -.++|||..|...
T Consensus 177 ~er~~l~~~~~~~~~~~vv~lSGDvH~~~ 205 (228)
T cd07389 177 AERERLLDLLAKRKIKNVVFLSGDVHLAE 205 (228)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecHHHHHH
Confidence 34667777766553 3478999999843
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.57 E-value=0.87 Score=39.26 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce
Q 022941 164 LNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 164 l~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
.+|++ +|++ +.+.+||+.|--.-..... ... ...+..-+.+.++|+++.||.|...
T Consensus 163 ~~~i~-~lr~-~~D~vIv~~H~G~e~~~~p-----~~~-~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 163 LADIA-RARK-KADVVIVSLHWGVEYQYEP-----TDE-QRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred HHHHH-HHhc-cCCEEEEEecCccccCCCC-----CHH-HHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 34443 4554 4678999999765322111 111 1234444545799999999999843
No 111
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=95.48 E-value=0.032 Score=37.58 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=26.7
Q ss_pred CeEEEecCCCCCC----------CCC-cccCCcEEEEEEe-CcEEEEEEEcC-CCcEEEEE
Q 022941 232 SITYMENPGLIES----------GNG-REMVDGFLLHKVS-SLEILTYFVTL-EGEVVYRT 279 (289)
Q Consensus 232 gi~~i~~g~~~~~----------~~g-~~~~~gf~~v~v~-~~~i~~~~~~~-~g~~~~~~ 279 (289)
++.||+.|+++.. |.. +...+||.++++. ...+.++++.. +|+++|+|
T Consensus 2 apVhiv~G~aG~~l~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~f 62 (62)
T PF14008_consen 2 APVHIVVGAAGNGLDPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSVLDEF 62 (62)
T ss_dssp S-EEEEE--S-T----B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T-CEE-
T ss_pred CCEEEEECcCCCCcccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcEecCC
Confidence 4567777765443 111 5679999999965 67899999985 59999986
No 112
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.29 E-value=0.6 Score=40.48 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=72.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCCh-hhhhhhccCCCCCCCeEEecCCCcCCCCcee-----
Q 022941 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP-LKQNATWLFPSLKVPWYTTKASKEKEVGCFQ----- 126 (289)
Q Consensus 53 ~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~-~~~~~~~~~~~l~~P~~~v~GNHD~~~~~~~----- 126 (289)
+++||. .|...-..+.+.|.++.++.++||||..|.+...+. .-...++.+-++++- ..+.|||=+...+..
T Consensus 1 LfiGDI-vG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvD-viT~GNH~wdkkei~~~i~~ 78 (253)
T PF13277_consen 1 LFIGDI-VGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGVD-VITMGNHIWDKKEIFDFIDK 78 (253)
T ss_dssp EEE-EB-BCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-S-EEE--TTTTSSTTHHHHHHH
T ss_pred CeEEec-CCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCC-EEecCcccccCcHHHHHHhc
Confidence 367882 233344566677777777889999999999865432 111122222122333 478999994333321
Q ss_pred -EeE----eCCC---CCeEEE----------EEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeecccc
Q 022941 127 -EQI----RLPH---GEALDI----------IGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLV 188 (289)
Q Consensus 127 -~~~----~~p~---~~~~~~----------i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~ 188 (289)
.++ ++|. +.++.+ +.|=...+. .+. .-.-.-++++-+.|+ .+.+.+||=+|--.
T Consensus 79 ~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm-----~~~-~~PF~~~d~~l~~l~-~~~~~iiVDFHAEa- 150 (253)
T PF13277_consen 79 EPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFM-----PPI-DCPFRAADRLLEELK-EETDIIIVDFHAEA- 150 (253)
T ss_dssp -SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---------S-HHHHHHHHHHH------SEEEEEEE-S--
T ss_pred CCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccC-----CCC-CChHHHHHHHHHhcc-ccCCEEEEEeecCc-
Confidence 111 2332 122222 222111111 111 122233344444442 34456666677321
Q ss_pred ccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce---e-cCCCeEEEecCCCCCC
Q 022941 189 ICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY---S-RQDSITYMENPGLIES 244 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~---~-~~~gi~~i~~g~~~~~ 244 (289)
+ .+ +.-+...-+-+|.+|+-=|+|.+. + -.+|+-|++--+.+++
T Consensus 151 T---------SE---K~A~g~~lDGrvsaV~GTHTHVqTaDerILp~GTaYiTDvGMtG~ 198 (253)
T PF13277_consen 151 T---------SE---KQAMGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 198 (253)
T ss_dssp H---------HH---HHHHHHHHBTTBSEEEEESSSS-BS--EE-TTS-EEES---EBEE
T ss_pred H---------HH---HHHHHHHhCCcEEEEEeCCCCccCchhhccCCCCEEEecCccccC
Confidence 1 11 112223344589999999999976 2 2468999987554443
No 113
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.085 Score=49.52 Aligned_cols=76 Identities=7% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCCCccEEEEEEeCCCCCChhH-HHHHHHHHHHHhh-----CCccEEEEcCCCC--------CCC--------hhhhhhh
Q 022941 44 NRKGLDFYFISVTGGFRPLEQQ-TLLLKQMEDVAKS-----YDARFVINTSELG--------EDD--------PLKQNAT 101 (289)
Q Consensus 44 ~~~~~~~~f~~~gD~~~g~~~~-~~~~~~l~~~~~~-----~~pdfvv~~GD~~--------~~~--------~~~~~~~ 101 (289)
+..+..++.++++|.|.|+..- ......+.++.+. .+...++++||.. +.+ .+|++..
T Consensus 220 ~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A 299 (481)
T COG1311 220 NTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELA 299 (481)
T ss_pred CCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHH
Confidence 4567889999999998887432 2223333344432 2357899999952 111 1233332
Q ss_pred ccCCCC--CCCeEEecCCCc
Q 022941 102 WLFPSL--KVPWYTTKASKE 119 (289)
Q Consensus 102 ~~~~~l--~~P~~~v~GNHD 119 (289)
+.+... .+.++..|||||
T Consensus 300 ~~L~~vp~~I~v~i~PGnhD 319 (481)
T COG1311 300 EFLDQVPEHIKVFIMPGNHD 319 (481)
T ss_pred HHHhhCCCCceEEEecCCCC
Confidence 333332 567899999999
No 114
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=94.45 E-value=0.037 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.+.+...|++++.++++=||.-..
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v~ 276 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECKP 276 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhhh
Confidence 467788999999999999999653
No 115
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.98 E-value=0.058 Score=49.71 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCc-cEEEEcCCCCCCChhhhhhhccC---C-CCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDA-RFVINTSELGEDDPLKQNATWLF---P-SLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~p-dfvv~~GD~~~~~~~~~~~~~~~---~-~l~~P~~~v~GNHD~ 120 (289)
++.++||.|. .-.++.+.+... .-... +.+|++||....++.-.+....+ + ..+--++.+.||||.
T Consensus 67 ~i~VvGDIHG---~~~dL~~ll~~~-g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~ 137 (377)
T cd07418 67 EVVVVGDVHG---QLHDVLFLLEDA-GFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHES 137 (377)
T ss_pred CEEEEEecCC---CHHHHHHHHHHh-CCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeeccc
Confidence 5899999664 223333333322 11222 45899999866554333332211 1 123357999999993
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=93.53 E-value=0.088 Score=47.34 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCC----CCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l----~~P~~~v~GNHD~ 120 (289)
+++++||.|.. -.++.+.+. .......+-++++||....++...+....+-.+ +--++.+.||||.
T Consensus 44 ~i~ViGDIHG~---~~dL~~l~~-~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~ 113 (305)
T cd07416 44 PVTVCGDIHGQ---FYDLLKLFE-VGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHEC 113 (305)
T ss_pred CEEEEEeCCCC---HHHHHHHHH-hcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcH
Confidence 47889996641 233333333 222234578999999866554333333221122 2357999999993
No 117
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=93.04 E-value=0.11 Score=45.82 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhcc---CC-CCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~---~~-~l~~P~~~v~GNHD~ 120 (289)
+++++||.|.. -.++.+.+... .....+-+++.||....++.-.+.... ++ ..+-.++.+.||||.
T Consensus 29 ~i~vvGDiHG~---~~~l~~ll~~~-~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~ 98 (271)
T smart00156 29 PVTVCGDIHGQ---FDDLLRLFDLN-GPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHES 98 (271)
T ss_pred CEEEEEeCcCC---HHHHHHHHHHc-CCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccH
Confidence 47889996641 23333333322 234567899999986655433333221 11 113357999999993
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=92.92 E-value=0.094 Score=47.37 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.+.+.+.|++.+.++++-||.-..
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~~ 256 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVKD 256 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCcccc
Confidence 457788999999999999999764
No 119
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=92.77 E-value=1.1 Score=40.72 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCeEEEeCCCccce
Q 022941 204 EPLHHIFMKFGVNTYLSKHGCIKY 227 (289)
Q Consensus 204 ~~l~~ll~~~~V~~vl~GH~H~~~ 227 (289)
..+..||++-+-..+||.|.|.-.
T Consensus 208 p~~~eLL~~LkP~yWfsAHLH~KF 231 (456)
T KOG2863|consen 208 PALEELLEDLKPQYWFSAHLHVKF 231 (456)
T ss_pred hHHHHHHHHhCcchhhhhhHhhHH
Confidence 467888999999999999999843
No 120
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=91.95 E-value=0.2 Score=45.33 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhcc---CC-CCCCCeEEecCCCcC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKEK 120 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~---~~-~l~~P~~~v~GNHD~ 120 (289)
.++++||.|. .-.++.+.+.. ......+-.|++||....++...+.... ++ ..+-.++.+.||||.
T Consensus 60 ~i~vvGDIHG---~~~dL~~l~~~-~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~ 129 (320)
T PTZ00480 60 PLKICGDVHG---QYFDLLRLFEY-GGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 129 (320)
T ss_pred CeEEEeeccc---CHHHHHHHHHh-cCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccch
Confidence 4888999664 12333333322 2223446788999986655433333221 11 113357999999993
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=91.24 E-value=0.21 Score=44.46 Aligned_cols=64 Identities=6% Similarity=-0.107 Sum_probs=36.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhcc---CC-CCCCCeEEecCCCc
Q 022941 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKE 119 (289)
Q Consensus 52 f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~---~~-~l~~P~~~v~GNHD 119 (289)
++++||.|.. -.++.+.+.. ......+-.|++||....++.-.+.... ++ ..+-.++.+.||||
T Consensus 44 i~vvGDIHG~---~~dL~~ll~~-~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 111 (285)
T cd07415 44 VTVCGDIHGQ---FYDLLELFRV-GGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHE 111 (285)
T ss_pred EEEEEeCCCC---HHHHHHHHHH-cCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccc
Confidence 7889996631 2233333322 2223456789999986555433333221 11 12346899999999
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=90.95 E-value=0.23 Score=44.45 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.+.+.+.|++.+.++++=||.-..
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~ 245 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVVE 245 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCcccc
Confidence 467788899999999999999653
No 123
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=90.48 E-value=0.21 Score=45.08 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCeEEEeCCCc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGC 224 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H 224 (289)
.+++...++++++++++=||.-
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe~ 263 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHEC 263 (311)
T ss_pred HHHHHHHHHHCCCeEEEEechh
Confidence 4678889999999999999994
No 124
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=89.54 E-value=1.6 Score=37.94 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcC--CCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccc
Q 022941 163 LLNWLKSALEATN--GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 163 Ql~WL~~~L~~~~--~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
+.+.+.+++++.+ .+.+||+.|--.-... .... ...++...|.+.++|+|+.+|-|.-
T Consensus 169 ~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~-----~p~~-~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 169 GIERIKEDIREARKKADVVIVSLHWGIEYEN-----YPTP-EQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEeccCCCCCC-----CCCH-HHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 3455666655543 5689999997421111 1112 2334555566689999999999983
No 125
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=89.40 E-value=0.44 Score=42.77 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.+.+.+.|++.+.++++=||.-..
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~~ 238 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLVM 238 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhhc
Confidence 467888899999999999999664
No 126
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=89.37 E-value=0.28 Score=43.83 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccc
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.+.+.+.+++.+.++++=||.-.+
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~~ 247 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVME 247 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCcccc
Confidence 467888899999999999999663
No 127
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=88.07 E-value=0.56 Score=41.27 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhc--CCCeEEEEeeccccccccc--c---c----hh------hHHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 163 LLNWLKSALEAT--NGQWCIVVGFHPLVICEEH--E---E----QL------EAKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 163 Ql~WL~~~L~~~--~~~~~iV~~HhP~~~~~~~--~---~----~~------~~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
-+-||+.+|..+ ..+++++|.|.---..... + . .+ .....+..++..++-|+|.-.+.||.|.
T Consensus 254 slpwlk~dl~~~aadgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd 333 (392)
T COG5555 254 SLPWLKVDLIYSAADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHD 333 (392)
T ss_pred cCcceeccceeeccCCCceeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccc
Confidence 468999999865 3469999999843222111 0 0 00 0112356788889999999999999998
Q ss_pred c-e-ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEEE---cCCCcEEEEEEEecC
Q 022941 226 K-Y-SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYFV---TLEGEVVYRTATRER 284 (289)
Q Consensus 226 ~-~-~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~---~~~g~~~~~~~i~~~ 284 (289)
. . ....++.....- .....||.+..|.++.+.+..- ...|+|..+.++.|+
T Consensus 334 ~~mayrr~~ld~fkpk--------aa~~Ggfav~rvt~~~mDva~geae~~~G~v~Ft~afsk~ 389 (392)
T COG5555 334 FNMAYRRYDLDAFKPK--------AAVRGGFAVGRVTNPWMDVANGEAEHPRGSVCFTTAFSKK 389 (392)
T ss_pred cceeeeecCccccCcc--------chhhcceeEEEecCchhhhhcccccCCCccEEEehhhhhc
Confidence 3 2 222233222111 2245788888888776555433 356888877666554
No 128
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=84.61 E-value=1.5 Score=36.88 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=32.8
Q ss_pred EEEEeCCCCCC-hhH-HHHHHHHHHHHhhCCccEEEEcCCCCCC-Ch-----------hhhhh-h----ccCCCC--CCC
Q 022941 52 FISVTGGFRPL-EQQ-TLLLKQMEDVAKSYDARFVINTSELGED-DP-----------LKQNA-T----WLFPSL--KVP 110 (289)
Q Consensus 52 f~~~gD~~~g~-~~~-~~~~~~l~~~~~~~~pdfvv~~GD~~~~-~~-----------~~~~~-~----~~~~~l--~~P 110 (289)
+++++|-+.+. ... ..+.+.+..+..+.+|+.+|++|+.... .. .+.+. . +.++++ .++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 46788855442 112 2222222222225679999999996321 11 11111 1 123444 689
Q ss_pred eEEecCCCc
Q 022941 111 WYTTKASKE 119 (289)
Q Consensus 111 ~~~v~GNHD 119 (289)
+..+||+||
T Consensus 81 vvlvPg~~D 89 (209)
T PF04042_consen 81 VVLVPGPND 89 (209)
T ss_dssp EEEE--TTC
T ss_pred EEEeCCCcc
Confidence 999999999
No 129
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=83.73 E-value=3.8 Score=35.96 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=41.5
Q ss_pred CCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCC-CChhhhhhh-ccCCCCCCCe-EEecCCCcC
Q 022941 44 NRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE-DDPLKQNAT-WLFPSLKVPW-YTTKASKEK 120 (289)
Q Consensus 44 ~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~-~~~~~~~~~-~~~~~l~~P~-~~v~GNHD~ 120 (289)
....+..||+.++|.|.-..+. ..-..-|+.+++||.+. ...+|-..+ +.+.+|.--+ +++.||||.
T Consensus 56 p~~~~~~r~VcisdtH~~~~~i----------~~~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHEL 125 (305)
T KOG3947|consen 56 PVGPGYARFVCISDTHELTFDI----------NDIPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHEL 125 (305)
T ss_pred CCCCCceEEEEecCcccccCcc----------ccCCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccce
Confidence 4467889999999977522221 11246689999999764 333332223 3333442221 699999994
Q ss_pred C
Q 022941 121 E 121 (289)
Q Consensus 121 ~ 121 (289)
+
T Consensus 126 t 126 (305)
T KOG3947|consen 126 T 126 (305)
T ss_pred e
Confidence 3
No 130
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=83.24 E-value=2.5 Score=37.04 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=19.9
Q ss_pred CeEEEeCCCccce-ec-----CCCeEEEecCCCCC
Q 022941 215 VNTYLSKHGCIKY-SR-----QDSITYMENPGLIE 243 (289)
Q Consensus 215 V~~vl~GH~H~~~-~~-----~~gi~~i~~g~~~~ 243 (289)
-+++++||.|.+. +. ...+..|..|..++
T Consensus 204 PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~ 238 (257)
T cd07387 204 PHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSK 238 (257)
T ss_pred CCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCc
Confidence 6899999999865 21 23466777777644
No 131
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.10 E-value=5.7 Score=37.40 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=42.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCC-ccEEEEcCCCCCC---ChhhhhhhccCCCCCCCeEEecCCC
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYD-ARFVINTSELGED---DPLKQNATWLFPSLKVPWYTTKASK 118 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~-pdfvv~~GD~~~~---~~~~~~~~~~~~~l~~P~~~v~GNH 118 (289)
.+++++||. .|.. ..+.+.+.++.++.+ .|+++++|+.-.+ +.+|.....-...+++|.|..-+|-
T Consensus 6 ~kILv~Gd~-~Gr~--~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 6 AKILVCGDV-EGRF--DELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNA 75 (528)
T ss_pred ceEEEEcCc-cccH--HHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCC
Confidence 689999993 2222 233455556666655 7999999997432 2244433344567789998877766
No 132
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=71.74 E-value=15 Score=31.06 Aligned_cols=27 Identities=4% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhCCccEEEEcCCCCC
Q 022941 65 QTLLLKQMEDVAKSYDARFVINTSELGE 92 (289)
Q Consensus 65 ~~~~~~~l~~~~~~~~pdfvv~~GD~~~ 92 (289)
..++..+.+ .-+..+.+.++.+||++.
T Consensus 79 ~~Ri~aA~~-ly~~gKV~~LLlSGDN~~ 105 (235)
T COG2949 79 TYRIDAAIA-LYKAGKVNYLLLSGDNAT 105 (235)
T ss_pred HHHHHHHHH-HHhcCCeeEEEEecCCCc
Confidence 344443333 335679999999999853
No 133
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=69.94 E-value=16 Score=32.61 Aligned_cols=73 Identities=4% Similarity=-0.063 Sum_probs=44.5
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhh--------CCccEEEEcCCCCC--------CChhhhhhhcc-----
Q 022941 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKS--------YDARFVINTSELGE--------DDPLKQNATWL----- 103 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~--------~~pdfvv~~GD~~~--------~~~~~~~~~~~----- 103 (289)
..+...+|+++||-+.. +..+.+++.++... ..|-.+|+.|+... ....+++.++.
T Consensus 23 ~~~~~~~~VilSDV~LD---~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~ll 99 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLD---SPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVML 99 (291)
T ss_pred cCCCceEEEEEEeeccC---CHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHH
Confidence 45788999999996653 33444444433222 23889999999421 11234444432
Q ss_pred ---CCCC--CCCeEEecCCCcC
Q 022941 104 ---FPSL--KVPWYTTKASKEK 120 (289)
Q Consensus 104 ---~~~l--~~P~~~v~GNHD~ 120 (289)
++.+ ..-++.|||-.|-
T Consensus 100 ls~fp~L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 100 ISKFKLILEHCYLIFIPGINDP 121 (291)
T ss_pred HHhChHHHhcCeEEEECCCCCC
Confidence 2333 5678999999993
No 134
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=66.71 E-value=7.1 Score=32.74 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 214 GVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 214 ~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
+.+.+++||+|... ...++..+|-+|+.
T Consensus 168 ~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRPLRLGNVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcceEECCEEEEECCCC
Confidence 45889999999965 55566777877775
No 135
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=66.66 E-value=6.5 Score=33.42 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=21.2
Q ss_pred hCCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 213 FGVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 213 ~~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
.+++.+++||+|... ...++..+|-+|+.
T Consensus 178 ~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~ 207 (218)
T PRK09968 178 NGADYFIFGHMMFDNIQTFANQIYIDTGSP 207 (218)
T ss_pred CCCCEEEECCCCcCcceeECCEEEEECCCC
Confidence 367899999999865 44556667776664
No 136
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=60.25 E-value=36 Score=31.47 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEe-eccccccccccchhhHHhhHHHHHHHHHHhCC---------eEEEeCCCccce
Q 022941 163 LLNWLKSALEATNGQWCIVVG-FHPLVICEEHEEQLEAKKIYEPLHHIFMKFGV---------NTYLSKHGCIKY 227 (289)
Q Consensus 163 Ql~WL~~~L~~~~~~~~iV~~-HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V---------~~vl~GH~H~~~ 227 (289)
.++-|++.+....-+ .++++ -|.| .|. ..+.+-...+.+|+++|+| |+++.||.|...
T Consensus 146 D~~~LE~~~~~~~vk-l~iLCnPHNP--~Gr----vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~ 213 (388)
T COG1168 146 DFDALEKAFVDERVK-LFILCNPHNP--TGR----VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPF 213 (388)
T ss_pred cHHHHHHHHhcCCcc-EEEEeCCCCC--CCc----cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccch
Confidence 345578888765433 33433 2322 222 1223345578889999975 688899999844
No 137
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=58.77 E-value=3.1 Score=22.66 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=15.0
Q ss_pred CCCCCchhHHHHHHHHHHHH
Q 022941 1 MAKRPSWVCTLITQLSLCLA 20 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (289)
|.||++++.+........+.
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 68999999877776666543
No 138
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=53.95 E-value=46 Score=27.48 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=36.3
Q ss_pred eecccCCCCCCCCCccEEEEEEeCCCCCChhHHHHHHHHHHHH-hhCCccEEEEcCCCCCCChhhhhhhc
Q 022941 34 IYQRTNGISSNRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVA-KSYDARFVINTSELGEDDPLKQNATW 102 (289)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~-~~~~pdfvv~~GD~~~~~~~~~~~~~ 102 (289)
+.+|+-.+ ..+++..-.+++++.. -....+..+.+.- +-..|.+||..|.....+..|.+.|.
T Consensus 61 D~~RfG~~-~r~SPRQaDvmIvaGt-----~t~Kmap~lr~~YdQMPePK~VIsMGsCa~~GG~f~~sYs 124 (194)
T COG0377 61 DLERFGEV-PRASPRQADLMIVAGT-----LTNKMAPALRRVYDQMPEPKWVISMGSCANSGGMYWNSYS 124 (194)
T ss_pred cHHHhCcC-CCCCcccccEEEEecc-----chHHHHHHHHHHHHhCCCCcEEEEecccccCCCcccccce
Confidence 33444333 3456666667777663 2345555555543 34789999999997654443333343
No 139
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=51.84 E-value=27 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=31.7
Q ss_pred HhhCCccEEEEcCCCCCCChhhhhhhccCC-CCCCCeEEecCCCc
Q 022941 76 AKSYDARFVINTSELGEDDPLKQNATWLFP-SLKVPWYTTKASKE 119 (289)
Q Consensus 76 ~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~-~l~~P~~~v~GNHD 119 (289)
+....-|+|++.|-.+.....-.+..+..+ ...+|++.-||||+
T Consensus 37 ~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 37 AAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred HHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 345688999999987655433333444443 66899999999999
No 140
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=50.88 E-value=87 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCC
Q 022941 46 KGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSE 89 (289)
Q Consensus 46 ~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD 89 (289)
.+.+++....+.-..++..|+-++. .-|||+++|=
T Consensus 38 sdt~vhlfyaanvtfpshfqrhfaa---------aqdfvvhtgy 72 (160)
T PF03076_consen 38 SDTSVHLFYAANVTFPSHFQRHFAA---------AQDFVVHTGY 72 (160)
T ss_pred CCCeEEEEEEecccChHHHHHHHhh---------hhceEEeecc
Confidence 4567777777775454444543332 2499999996
No 141
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=49.70 E-value=26 Score=31.97 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCeEEEeCCCccce-----ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCc-EEEEEEEcC
Q 022941 203 YEPLHHIFMKFGVNTYLSKHGCIKY-----SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSL-EILTYFVTL 271 (289)
Q Consensus 203 ~~~l~~ll~~~~V~~vl~GH~H~~~-----~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~-~i~~~~~~~ 271 (289)
.+.+.+.+++.++++++-||.=.+. ....-++.+.++.-+.. ......++.|+.+ .++++....
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~-----~~n~gavm~Vd~~l~~sf~~l~p 302 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGE-----FDNAGAVMRVDKNLKCSFVILRP 302 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccc-----cCCceEEEEECCCCeEEEEEecc
Confidence 4677788999999999999985432 22223555554544332 2233467777665 356665555
No 142
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=48.85 E-value=15 Score=31.52 Aligned_cols=68 Identities=4% Similarity=0.036 Sum_probs=39.7
Q ss_pred EEEeCCCCCChh-HHHHHHHHHHHHhhC-----CccEEEEcCCCCCCCh----------------hhhhhhccCCCC--C
Q 022941 53 ISVTGGFRPLEQ-QTLLLKQMEDVAKSY-----DARFVINTSELGEDDP----------------LKQNATWLFPSL--K 108 (289)
Q Consensus 53 ~~~gD~~~g~~~-~~~~~~~l~~~~~~~-----~pdfvv~~GD~~~~~~----------------~~~~~~~~~~~l--~ 108 (289)
++++|.|.+... .....+.+.+..+.. ++|.+|++||+..... .++...+.+.++ +
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 578997765532 122223444443333 5799999999754210 011112334444 5
Q ss_pred CCeEEecCCCcC
Q 022941 109 VPWYTTKASKEK 120 (289)
Q Consensus 109 ~P~~~v~GNHD~ 120 (289)
+|++.+|||||.
T Consensus 82 ~~v~~ipGNHD~ 93 (243)
T cd07386 82 IKIIIIPGNHDA 93 (243)
T ss_pred CeEEEeCCCCCc
Confidence 899999999993
No 143
>COG2237 Predicted membrane protein [Function unknown]
Probab=48.49 E-value=51 Score=30.21 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=39.2
Q ss_pred CCccEEEEEEeC-CCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCC
Q 022941 46 KGLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD 94 (289)
Q Consensus 46 ~~~~~~f~~~gD-~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~ 94 (289)
+..++-+++++- ...|...+..+.+++.......+||.++...|-.+++
T Consensus 63 ~geDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~VsDGaeDe 112 (364)
T COG2237 63 KGEDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVVVSDGAEDE 112 (364)
T ss_pred cCCceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEEeccCcccc
Confidence 446788888765 4447778889999999999999999999999976543
No 144
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=47.75 E-value=34 Score=30.03 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHhhCCccEEEEcCCCCCC
Q 022941 63 EQQTLLLKQMEDVAKSYDARFVINTSELGED 93 (289)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~ 93 (289)
......++.+.+..++.++| +|++|+.+.+
T Consensus 94 ~d~~~ta~~Laa~~~~~~~~-LVl~G~qa~D 123 (260)
T COG2086 94 ADPLATAKALAAAVKKIGPD-LVLTGKQAID 123 (260)
T ss_pred ccHHHHHHHHHHHHHhcCCC-EEEEeccccc
Confidence 34566777888888888888 7888997543
No 145
>PHA00407 phage lambda Rz1-like protein
Probab=47.32 E-value=22 Score=24.69 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhcc
Q 022941 5 PSWVCTLITQLSLCLALYVALNL 27 (289)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (289)
+.|+++++=++++|.+.+.+|+.
T Consensus 29 ~rwkaaLIGlllicv~tISGCaS 51 (84)
T PHA00407 29 RRWKAALIGLLLICVATISGCAS 51 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 36999999999999999999983
No 146
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=45.47 E-value=24 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 214 GVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 214 ~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
+.+.+++||+|... ...++...|-+|+.
T Consensus 179 ~~~~vv~GHT~~~~~~~~~~~i~IDtGav 207 (218)
T PRK11439 179 GADHFWFGHTPLRHRVDIGNLHYIDTGAV 207 (218)
T ss_pred CCCEEEECCccCCCccccCCEEEEECCCC
Confidence 55789999999965 45556777777764
No 147
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=44.34 E-value=79 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCC--CCCeEEecCCCc
Q 022941 72 MEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL--KVPWYTTKASKE 119 (289)
Q Consensus 72 l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l--~~P~~~v~GNHD 119 (289)
+.+.+.+...|++++.|=.+.. ...++..+.+++. .+|++.-|||++
T Consensus 17 ~~~~~~~~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 17 IAKLAEESGTDAIMVGGSDGVS-STLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHhcCCCEEEECCccchh-hhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4444555688999999987543 2222222333222 489999999999
No 148
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=44.09 E-value=0.82 Score=37.76 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH--hccCCCceeeecccCCCCCCCCCccEEEEEEeC
Q 022941 2 AKRPSWVCTLITQLSLCLALYVA--LNLGQPQKSIYQRTNGISSNRKGLDFYFISVTG 57 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~gD 57 (289)
.|++|+..+|+=..=+|+|.|.. .+.++--..+++++....+...+..|.|+++|.
T Consensus 69 ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 69 ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 37788888888888888888774 456666666666655444456789999999996
No 149
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=41.92 E-value=39 Score=24.96 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhccCCCc
Q 022941 1 MAKRPSWVCTLITQLSLCLALYVALNLGQPQ 31 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (289)
|-|.+.|+-.+++..++..++|..=+.+.+.
T Consensus 1 mN~yp~WKyllil~vl~~~~lyALPnlyge~ 31 (101)
T PF13721_consen 1 MNRYPLWKYLLILVVLLLGALYALPNLYGED 31 (101)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 8899999988777766666677665554444
No 150
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=41.10 E-value=1.7e+02 Score=25.29 Aligned_cols=40 Identities=3% Similarity=-0.048 Sum_probs=21.9
Q ss_pred EEEEEeCCCC---CCh--h-HHHHHHHHHHHHhhCCccEEEEcCCCC
Q 022941 51 YFISVTGGFR---PLE--Q-QTLLLKQMEDVAKSYDARFVINTSELG 91 (289)
Q Consensus 51 ~f~~~gD~~~---g~~--~-~~~~~~~l~~~~~~~~pdfvv~~GD~~ 91 (289)
-.+|+|-+.. |.. . ..++..++. +.++.+...+|++||..
T Consensus 47 ~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~-LYk~gk~~~ilvSGg~~ 92 (239)
T PRK10834 47 VGVVLGTAKYYRTGVINQYYRYRIQGAIN-AYNSGKVNYLLLSGDNA 92 (239)
T ss_pred EEEEcCCcccCCCCCcCHHHHHHHHHHHH-HHHhCCCCEEEEeCCCC
Confidence 3777885321 221 1 234444333 33455678899999964
No 151
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=39.05 E-value=43 Score=30.78 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=30.8
Q ss_pred HHHHHHhhC--CccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 71 QMEDVAKSY--DARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 71 ~l~~~~~~~--~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
.+..+.... +||.||++|=++..+..++...+.++.+ .|++..||.-+
T Consensus 282 ~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~-a~v~~~pg~~e 331 (351)
T TIGR02707 282 EIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFI-APVLVYPGEDE 331 (351)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhh-CCEEEeCCcHH
Confidence 344444556 7999999998886543332223344444 79999999544
No 152
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.78 E-value=95 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCc
Q 022941 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGC 224 (289)
Q Consensus 161 ~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H 224 (289)
++.++-+.+.|++.-..-.|+-.|+|.+.. ...+.+...+.+.+.|+++.|=-=
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~----------~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHHGYFDE----------EEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCCh----------hhHHHHHHHHHHcCCCEEEEECCC
Confidence 345555666777655455666667676621 123456677888999999988653
No 153
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=36.86 E-value=64 Score=31.91 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCe----EEEeCCCccce------ecCCCeEEEecCCCCCCCCCcccCCcEEEEE
Q 022941 204 EPLHHIFMKFGVN----TYLSKHGCIKY------SRQDSITYMENPGLIESGNGREMVDGFLLHK 258 (289)
Q Consensus 204 ~~l~~ll~~~~V~----~vl~GH~H~~~------~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~ 258 (289)
+--..+|++.+++ .+++||+=... -..+|-.+++-||.++.....++-.||+++-
T Consensus 509 ~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYqk~TGIAGYTLiy 573 (640)
T PF06874_consen 509 EICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQKTTGIAGYTLIY 573 (640)
T ss_pred HHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhccccCccceEEEe
Confidence 4456788999988 89999997643 2347888899899877632234456776653
No 154
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=35.54 E-value=41 Score=29.03 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCC
Q 022941 67 LLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASK 118 (289)
Q Consensus 67 ~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNH 118 (289)
.+.+.|.+..++.+-=.=+++||.+-.+..++ ..+.++.++|||-.+||=-
T Consensus 63 eIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~E-Qm~~L~~~gI~yevvPGVs 113 (254)
T COG2875 63 EIIDLMVDAVREGKDVVRLHSGDPSIYGALAE-QMRELEALGIPYEVVPGVS 113 (254)
T ss_pred HHHHHHHHHHHcCCeEEEeecCChhHHHHHHH-HHHHHHHcCCCeEEeCCch
Confidence 44455555554444445589999865444333 3345677799999999943
No 155
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=35.00 E-value=46 Score=28.38 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=20.4
Q ss_pred CCeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 214 GVNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 214 ~V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
+.+.+++||+|... ...++...|-+|+.
T Consensus 181 ~~~~vv~GHt~~~~~~~~~~~i~IDtGav 209 (234)
T cd07423 181 GDALVVYGHTPVPEPRWLNNTINIDTGCV 209 (234)
T ss_pred CCeEEEECCCCCccceEeCCEEEEECCCC
Confidence 56789999999965 44456667776764
No 156
>PRK10799 metal-binding protein; Provisional
Probab=34.67 E-value=47 Score=28.78 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=24.4
Q ss_pred EEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 179 CIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 179 ~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
-+++.|||++-...... ......+....+.++++ .+++-|++.
T Consensus 58 dlIitHHP~~~~~~~~~---~~~~~~~~~~~li~~~i-~vy~~Htn~ 100 (247)
T PRK10799 58 DAVIVHHGYFWKGESPV---IRGMKRNRLKTLLANDI-NLYGWHLPL 100 (247)
T ss_pred CEEEECCchhccCCCcc---ccchHHHHHHHHHHCCC-eEEEEecch
Confidence 37889999875443210 11122234445556666 457788877
No 157
>PHA02902 putative IMV membrane protein; Provisional
Probab=34.27 E-value=84 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccC
Q 022941 7 WVCTLITQLSLCLALYVALNLG 28 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (289)
++-++++-+|.|++.|.+++-.
T Consensus 6 fvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788899999998854
No 158
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=34.21 E-value=49 Score=32.27 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEEcCCCccCCCCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 022941 138 DIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (289)
Q Consensus 138 ~~i~lDt~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP 186 (289)
.++.||- |.+.+.-+-..||++.|...+. .+||++|--
T Consensus 173 DlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR 210 (530)
T COG0488 173 DLLLLDE----------PTNHLDLESIEWLEDYLKRYPG-TVIVVSHDR 210 (530)
T ss_pred CEEEEcC----------CCcccCHHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 3677774 4456778899999999998776 788888864
No 159
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=33.53 E-value=65 Score=28.32 Aligned_cols=69 Identities=6% Similarity=-0.026 Sum_probs=35.7
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccE-EEEcCCCCCCChhhhhhhccC---C-CCCCCeEEecCCCc
Q 022941 46 KGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARF-VINTSELGEDDPLKQNATWLF---P-SLKVPWYTTKASKE 119 (289)
Q Consensus 46 ~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdf-vv~~GD~~~~~~~~~~~~~~~---~-~l~~P~~~v~GNHD 119 (289)
++-..-..+.||.|. +-.++.+.+ ++ -...||- .++.||....++.-.+....+ + +.+-.+-.++||||
T Consensus 56 ~~v~~pvtvcGDvHG---qf~dl~ELf-ki-GG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHE 129 (319)
T KOG0371|consen 56 QPVNCPVTVCGDVHG---QFHDLIELF-KI-GGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHE 129 (319)
T ss_pred cccccceEEecCcch---hHHHHHHHH-Hc-cCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchH
Confidence 344445566899553 223444444 22 2345664 678999754433111111111 1 12334678999999
No 160
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.80 E-value=1.3e+02 Score=24.28 Aligned_cols=53 Identities=21% Similarity=0.075 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCC
Q 022941 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHG 223 (289)
Q Consensus 161 ~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~ 223 (289)
++.++-+.+.|++.-..-.|+-.|+|.+..... .++...+.+.+.|+++.|=-
T Consensus 56 ~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~----------~~i~~~I~~~~pdiv~vglG 108 (171)
T cd06533 56 PEVLEKAAERLRARYPGLKIVGYHHGYFGPEEE----------EEIIERINASGADILFVGLG 108 (171)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCCCChhhH----------HHHHHHHHHcCCCEEEEECC
Confidence 344555566666654455666668887664321 12667788889999988754
No 161
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.60 E-value=79 Score=26.69 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=29.4
Q ss_pred HhhCCccEEEEcCCCCCCChhhhhhhccCCC-CCCCeEEecCCCc
Q 022941 76 AKSYDARFVINTSELGEDDPLKQNATWLFPS-LKVPWYTTKASKE 119 (289)
Q Consensus 76 ~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~-l~~P~~~v~GNHD 119 (289)
..+.+.|.+++.|=.+.+.....+..+..++ .++|++.-|||++
T Consensus 20 v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 20 AKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 3456789999998765433222223333444 5799999999999
No 162
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=32.55 E-value=33 Score=24.33 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=10.0
Q ss_pred CccEEEEcCCCCC
Q 022941 80 DARFVINTSELGE 92 (289)
Q Consensus 80 ~pdfvv~~GD~~~ 92 (289)
++|.+|.-||-+.
T Consensus 68 dYDVLItd~dG~~ 80 (100)
T PF05984_consen 68 DYDVLITDGDGSE 80 (100)
T ss_pred cccEEEecCCCCc
Confidence 6788888888643
No 163
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=31.71 E-value=2.4e+02 Score=25.27 Aligned_cols=41 Identities=7% Similarity=-0.094 Sum_probs=24.6
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcC
Q 022941 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTS 88 (289)
Q Consensus 47 ~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~G 88 (289)
..+.++.++-.. .....-..+.+.+.+.+++.+.++++..+
T Consensus 44 r~t~~Igvv~p~-~~~~f~~~~~~gi~~aa~~~G~~l~i~~~ 84 (343)
T PRK10936 44 KKAWKLCALYPH-LKDSYWLSVNYGMVEEAKRLGVDLKVLEA 84 (343)
T ss_pred CCCeEEEEEecC-CCchHHHHHHHHHHHHHHHhCCEEEEEcC
Confidence 346666666542 11223445666677777777888888765
No 164
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=31.11 E-value=2.1e+02 Score=25.99 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=10.2
Q ss_pred CccEEEEEEeCC
Q 022941 47 GLDFYFISVTGG 58 (289)
Q Consensus 47 ~~~~~f~~~gD~ 58 (289)
+.++.|+.+||+
T Consensus 55 ~~~v~fV~~~d~ 66 (336)
T COG4143 55 GCKVNFVALGDG 66 (336)
T ss_pred CceEEEEEcCcH
Confidence 578999999994
No 165
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=30.31 E-value=1.8e+02 Score=19.90 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 159 ~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
.+..-+.|+.+.. .....++..|+. ...+.+.+..++.+++.++.||.-.
T Consensus 10 dS~~~l~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~Iv~G~~~~ 59 (86)
T cd01984 10 DSSVLLHLAKRLK---SGGPEVVALVVV--------------AFVRILKRLAAEEGADVIILGHNAD 59 (86)
T ss_pred HHHHHHHHHHHHH---hcCCCEEEEEeH--------------HHHHHHHHHHHHcCCCEEEEcCCch
Confidence 3445556665533 113345555554 2345566778888999999999755
No 166
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=30.27 E-value=41 Score=18.59 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=10.9
Q ss_pred CCCCCchhHHHHHHHH
Q 022941 1 MAKRPSWVCTLITQLS 16 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (289)
++||.+++.+.....+
T Consensus 1 ~sRR~Flk~~~~~~a~ 16 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAA 16 (29)
T ss_pred CchhhhHHHHHHHHHH
Confidence 5899999876544433
No 167
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=30.23 E-value=1.4e+02 Score=23.74 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=42.0
Q ss_pred HhhHHHHHHHHHHhCCeEEEeCCCccc-e-----ecCCCeEEEecCCCCCCCCCcccCCcEEEEEEeCcEEEEEEEcCCC
Q 022941 200 KKIYEPLHHIFMKFGVNTYLSKHGCIK-Y-----SRQDSITYMENPGLIESGNGREMVDGFLLHKVSSLEILTYFVTLEG 273 (289)
Q Consensus 200 ~~~~~~l~~ll~~~~V~~vl~GH~H~~-~-----~~~~gi~~i~~g~~~~~~~g~~~~~gf~~v~v~~~~i~~~~~~~~g 273 (289)
....+.+.+++++.+.+++|+||.-.- . ...-+..+++ +-.-++.+++++.++-.-..|
T Consensus 76 ~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~---------------~v~~l~~~~~~~~~~r~~~gG 140 (164)
T PF01012_consen 76 EAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT---------------DVTDLEVEDGGLVVTRPVYGG 140 (164)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE---------------EEEEEEEETTEEEEEEEETTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc---------------eEEEEEECCCeEEEEEECCCC
Confidence 445678889999999999999998652 2 0111233322 223555666677776666677
Q ss_pred cEEEEEEEe
Q 022941 274 EVVYRTATR 282 (289)
Q Consensus 274 ~~~~~~~i~ 282 (289)
+.+-+.++.
T Consensus 141 ~~~~~~~~~ 149 (164)
T PF01012_consen 141 KVVATVRLP 149 (164)
T ss_dssp TEEEEEECS
T ss_pred EEEEEEECC
Confidence 776666665
No 168
>PRK12342 hypothetical protein; Provisional
Probab=30.14 E-value=1.1e+02 Score=26.80 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCC
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE 92 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~ 92 (289)
+-+.+.|...+.......++.+....++.+||+|+ +|..+.
T Consensus 80 ~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl-~G~~s~ 120 (254)
T PRK12342 80 SLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLL-FGEGSG 120 (254)
T ss_pred EEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEE-EcCCcc
Confidence 34555663222234455566666666666788755 566543
No 169
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.14 E-value=2.6e+02 Score=26.48 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=46.7
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccC-CCCCCCeEEecCCCcCCCCceeE
Q 022941 49 DFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLF-PSLKVPWYTTKASKEKEVGCFQE 127 (289)
Q Consensus 49 ~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~-~~l~~P~~~v~GNHD~~~~~~~~ 127 (289)
+-.++++|=.+.|. ...+..++......+...++++.|.-.. ..|.+. +.+ ...++|++.....+| ...-..+
T Consensus 100 ~~vi~lvG~~GvGK---TTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQL-k~~a~~~~vp~~~~~~~~d-p~~i~~~ 173 (429)
T TIGR01425 100 QNVIMFVGLQGSGK---TTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQL-KQNATKARIPFYGSYTESD-PVKIASE 173 (429)
T ss_pred CeEEEEECCCCCCH---HHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHH-HHHhhccCCeEEeecCCCC-HHHHHHH
Confidence 44566666644433 2233334434444566888999996332 122221 122 345799998777676 2110000
Q ss_pred eEeCCCCCeEEEEEEcCCC
Q 022941 128 QIRLPHGEALDIIGVNTGS 146 (289)
Q Consensus 128 ~~~~p~~~~~~~i~lDt~~ 146 (289)
.+..-...+..+|++||..
T Consensus 174 ~l~~~~~~~~DvViIDTaG 192 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSG 192 (429)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 0000011346789999974
No 170
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=29.38 E-value=2.5e+02 Score=26.39 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=34.4
Q ss_pred CeEEEeCCCccce--ecCCCeEEEecCCCCCC-CCCcccCCcEEEEEEeCcE-EEEEEEcC
Q 022941 215 VNTYLSKHGCIKY--SRQDSITYMENPGLIES-GNGREMVDGFLLHKVSSLE-ILTYFVTL 271 (289)
Q Consensus 215 V~~vl~GH~H~~~--~~~~gi~~i~~g~~~~~-~~g~~~~~gf~~v~v~~~~-i~~~~~~~ 271 (289)
.|.+--||.|.++ .....+.| +|+--.. .+-.....|+.+|++++++ ..++.+..
T Consensus 221 ~dYvALGHlH~~Q~v~~~~~vrY--sGSpl~~sFsE~~~~K~v~lVel~~~~~~~v~~i~l 279 (407)
T PRK10966 221 ADYIALGHIHRAQKVGGTEHIRY--SGSPIPLSFDELGKSKSVHLVEFDQGKLQSVTPLPV 279 (407)
T ss_pred cCeeeccccccCcCCCCCCcEEE--cCCCCCCCccccCCCCeEEEEEEcCCccceEEEEEC
Confidence 5777789999955 22334666 3443221 1113346899999998664 67777764
No 171
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=29.09 E-value=48 Score=29.15 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=13.9
Q ss_pred CCCCCCeEEecCCCc
Q 022941 105 PSLKVPWYTTKASKE 119 (289)
Q Consensus 105 ~~l~~P~~~v~GNHD 119 (289)
.+|++++..|.||||
T Consensus 114 g~L~~eI~~VIsNH~ 128 (287)
T COG0788 114 GELPAEIVAVISNHD 128 (287)
T ss_pred CCcCCceEEEEcCCH
Confidence 578999999999999
No 172
>PLN00214 putative protein; Provisional
Probab=28.85 E-value=37 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhccCC
Q 022941 1 MAKRPSWVCTLITQLSLCLALYVALNLGQ 29 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (289)
|+|+.+..-++++-.++++++-.++...+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 29 (115)
T PLN00214 1 MSKFSSQITTLFIVVALVCAFVPVFSVEE 29 (115)
T ss_pred CCccccchhHHHHHHHHHHhcccccchhh
Confidence 89999998888888888877766666444
No 173
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=1.4e+02 Score=28.26 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCeEEEEeeccccccccccchhh---HHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 165 NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLE---AKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 165 ~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~---~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
+-+.+.+++.+.+.+||=.=+.+|+....+..+. ..+...+|..+.++.++-++|.||.--
T Consensus 158 e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTK 221 (456)
T COG1066 158 EDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTK 221 (456)
T ss_pred HHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcc
Confidence 3345555554444444444444554433211121 122345666666666777777777643
No 174
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=28.19 E-value=2.2e+02 Score=24.70 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCC-CCChhhhhhhccCCCCCCCeEEec
Q 022941 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG-EDDPLKQNATWLFPSLKVPWYTTK 115 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~-~~~~~~~~~~~~~~~l~~P~~~v~ 115 (289)
+....+.+.++|-|..-...+ +.+......++.+|||+|..+=+. ..++ ....+.++..++|.+.+-
T Consensus 27 AdRedI~vrv~gsGaKm~pe~--~~~~~~~~~~~~~pDf~i~isPN~a~PGP--~~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 27 ADREDIDVRVVGSGAKMGPEE--VEEVVKKMLEEWKPDFVIVISPNPAAPGP--KKAREILKAAGIPCIVIG 94 (277)
T ss_pred hcccCceEEEeccCCCCCHHH--HHHHHHHHHHhhCCCEEEEECCCCCCCCc--hHHHHHHHhcCCCEEEEc
Confidence 345567777777754422222 223333344567999999999874 2343 123345566677877653
No 175
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=28.12 E-value=1.1e+02 Score=26.11 Aligned_cols=43 Identities=5% Similarity=-0.041 Sum_probs=30.1
Q ss_pred hhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 77 KSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 77 ~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
.....|.+++.|=.+.......+..+.+++..+|++.-|||++
T Consensus 24 ~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 66 (223)
T TIGR01768 24 AESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPT 66 (223)
T ss_pred HhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcc
Confidence 3457899999998754433333333445556699999999999
No 176
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=28.11 E-value=40 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhccCCCce
Q 022941 14 QLSLCLALYVALNLGQPQK 32 (289)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (289)
.+++|+++.++|.+..+..
T Consensus 2 aLll~f~~iaaw~~~~~~~ 20 (54)
T PF12553_consen 2 ALLLVFAAIAAWMARNPDI 20 (54)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 3458888899999888864
No 177
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.93 E-value=1.2e+02 Score=26.59 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=24.5
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCC
Q 022941 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE 92 (289)
Q Consensus 50 ~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~ 92 (289)
.+..++|| +..++.+.+....+ ++|+||.+|=++.
T Consensus 38 ~~~~~VgD------~~~~I~~~l~~a~~--r~D~vI~tGGLGP 72 (255)
T COG1058 38 ARITTVGD------NPDRIVEALREASE--RADVVITTGGLGP 72 (255)
T ss_pred EEEEecCC------CHHHHHHHHHHHHh--CCCEEEECCCcCC
Confidence 44556677 56667777665443 3999999999864
No 178
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=27.48 E-value=2.9e+02 Score=22.81 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhccCCCceeeecccCCCCCCCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCcc
Q 022941 3 KRPSWVCTLITQLSLCLALYVALNLGQPQKSIYQRTNGISSNRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDAR 82 (289)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pd 82 (289)
+++.|+..+-+++ |-+=+ .++..|.+ +.+++-......+++..-++++.-.-.- ......+.+- ....+|.
T Consensus 34 ~~Slw~~~~~~~C--C~iE~--~a~~~~~y-DleRfGi~~~~~sPR~ADillVeG~VT~--~m~~~l~~~~--e~~p~pK 104 (181)
T PRK14817 34 KYSLFTYPFVTAC--CGMEY--MTMASARY-DSDRFGAAMPRFSPRQADLLMVVGTVNC--KQAPILQRVY--EQMADPK 104 (181)
T ss_pred hCCccccccccch--HHHHH--HHhcCccc-cHHHhceeeccCCCcceeEEEEEecCCc--cchHHHHHHH--HHcccCC
Confidence 4566677665542 32222 22333443 3333322222356777777777662210 1111222221 2236899
Q ss_pred EEEEcCCCCC
Q 022941 83 FVINTSELGE 92 (289)
Q Consensus 83 fvv~~GD~~~ 92 (289)
+||..|+...
T Consensus 105 ~VIAvGaCA~ 114 (181)
T PRK14817 105 WVMAFGVCAS 114 (181)
T ss_pred EEEEeccccc
Confidence 9999999744
No 179
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=27.05 E-value=1e+02 Score=17.29 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=12.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhccC
Q 022941 1 MAKRPSWVCTLITQLSLCLALYVALNLG 28 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (289)
|-|+...-. +.|+|++++.-+.+.
T Consensus 1 Mrk~Lg~~~----lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 1 MRKHLGGWW----LAIVCVLLFSHLSSV 24 (30)
T ss_dssp --SS-SSHH----HHHHHHHHHHHTTTT
T ss_pred CccchhhHH----HHHHHHHHHHHhhHH
Confidence 444444433 566777777766643
No 180
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.82 E-value=62 Score=23.68 Aligned_cols=6 Identities=0% Similarity=-0.069 Sum_probs=2.8
Q ss_pred hccCCC
Q 022941 25 LNLGQP 30 (289)
Q Consensus 25 ~~~~~~ 30 (289)
.++++.
T Consensus 23 vaa~~~ 28 (95)
T PF07172_consen 23 VAAREL 28 (95)
T ss_pred hhhHHh
Confidence 444444
No 181
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=26.57 E-value=1.2e+02 Score=24.84 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=11.1
Q ss_pred hCCccEEEEcCCCCCCC
Q 022941 78 SYDARFVINTSELGEDD 94 (289)
Q Consensus 78 ~~~pdfvv~~GD~~~~~ 94 (289)
..+|.+||..|+....+
T Consensus 95 mPePK~VIA~G~CA~sG 111 (173)
T PRK14818 95 MPEPKYVISMGSCSNCG 111 (173)
T ss_pred CCCCCEEEEeccccccC
Confidence 36777888888754433
No 182
>PRK02710 plastocyanin; Provisional
Probab=26.56 E-value=85 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=6.7
Q ss_pred CCCCCchhHHHHHH
Q 022941 1 MAKRPSWVCTLITQ 14 (289)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (289)
|+||-...+++.++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (119)
T PRK02710 1 MAKRLRSIAAALVA 14 (119)
T ss_pred CchhHHHHHHHHHH
Confidence 66654444433333
No 183
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=26.38 E-value=2.6e+02 Score=22.40 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCC
Q 022941 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHG 223 (289)
Q Consensus 160 ~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~ 223 (289)
....+++|++.+.+..+.-.||+-+---...+............+.+..+.+++++..++..|.
T Consensus 125 ~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 125 LDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp SHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred chHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3566788888888743334566654433333211111111345567777778889888888775
No 184
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=26.05 E-value=62 Score=28.58 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhCCe-EEEeCCC
Q 022941 200 KKIYEPLHHIFMKFGVN-TYLSKHG 223 (289)
Q Consensus 200 ~~~~~~l~~ll~~~~V~-~vl~GH~ 223 (289)
.++.+.+.++|++++-| +||.||+
T Consensus 139 ~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred hhchHHHHHHHHHhCCCEEEEeCch
No 185
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.47 E-value=72 Score=28.31 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhCCe-EEEeCCC
Q 022941 200 KKIYEPLHHIFMKFGVN-TYLSKHG 223 (289)
Q Consensus 200 ~~~~~~l~~ll~~~~V~-~vl~GH~ 223 (289)
.++.+.+.++|++++-| +||.||+
T Consensus 140 ~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeCch
No 186
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=25.38 E-value=3.3e+02 Score=23.20 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=38.6
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHhhCCccEEEEcCCCC-CCChhhhhhhccCCCCCCCeEEe
Q 022941 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG-EDDPLKQNATWLFPSLKVPWYTT 114 (289)
Q Consensus 45 ~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~-~~~~~~~~~~~~~~~l~~P~~~v 114 (289)
+....+.+-|+|-|..-.. .-+-.+.....++.+||||+..|=+. ..++ ....+++....+|.+.+
T Consensus 27 AdRedi~vrVvgsgaKM~P--e~veaav~~~~e~~~pDfvi~isPNpaaPGP--~kARE~l~~s~~Paiii 93 (277)
T COG1927 27 ADREDIEVRVVGSGAKMDP--ECVEAAVTEMLEEFNPDFVIYISPNPAAPGP--KKAREILSDSDVPAIII 93 (277)
T ss_pred cccCCceEEEeccccccCh--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCc--hHHHHHHhhcCCCEEEe
Confidence 4456677777887543222 22222333445678999999999873 2333 22345666667776554
No 187
>PLN02755 complex I subunit
Probab=25.32 E-value=48 Score=22.75 Aligned_cols=34 Identities=12% Similarity=-0.124 Sum_probs=27.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccCCCceeee
Q 022941 2 AKRPSWVCTLITQLSLCLALYVALNLGQPQKSIY 35 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (289)
|||..+...++..++=.|+.+|.-+-|+.+..++
T Consensus 30 T~Rt~~i~~ifgv~VP~liy~giv~eF~~~d~~~ 63 (71)
T PLN02755 30 TRRNLAVVGIFGIAVPILVYKGIVREFHMQDEDA 63 (71)
T ss_pred ccchhhhhhhhhhhhhHHhhhhhhhhhcccchhc
Confidence 6788888878888888888888888888886554
No 188
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=25.22 E-value=1.9e+02 Score=23.93 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=25.6
Q ss_pred CCCCccEEEEEEeCCCCCChhHHHHHHHHHHHH-hhCCccEEEEcCCCCCC
Q 022941 44 NRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVA-KSYDARFVINTSELGED 93 (289)
Q Consensus 44 ~~~~~~~~f~~~gD~~~g~~~~~~~~~~l~~~~-~~~~pdfvv~~GD~~~~ 93 (289)
.++++..-++++.-.-.- .. ...+.++- +..+|.+||..|+....
T Consensus 68 ~~sPR~aDillVeG~VT~--~m---~~~l~~~~e~~p~pk~VIAvGaCA~~ 113 (180)
T PRK14820 68 SFSPRQADMLMVMGTIAK--KM---APVLKQVYLQMAEPRWVVAVGACASS 113 (180)
T ss_pred CCCCccceEEEEEecCCc--cc---HHHHHHHHHhcCCCCeEEEEeccccc
Confidence 456777777777662110 11 22232222 24689999999997543
No 189
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=24.79 E-value=64 Score=29.45 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=23.6
Q ss_pred HHHHHHHHhhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecC
Q 022941 69 LKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKA 116 (289)
Q Consensus 69 ~~~l~~~~~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~G 116 (289)
...+.++.+..+||+|+..||.... ..... .-..+++|+..+-|
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~---la~al-aA~~~~ipv~Hiea 99 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEA---LAAAL-AAFYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHH---HHHHH-HHHHTT-EEEEES-
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchH---HHHHH-HHHHhCCCEEEecC
Confidence 3445566677899999999997321 10000 01235788865544
No 190
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=24.51 E-value=1.6e+02 Score=25.41 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=30.0
Q ss_pred hhCCccEEEEcCCCCCCChhhhhhhccCCCCCCCeEEecCCCc
Q 022941 77 KSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 77 ~~~~pdfvv~~GD~~~~~~~~~~~~~~~~~l~~P~~~v~GNHD 119 (289)
.....|++++.|=.+.......+..+..++.++|++.-|||++
T Consensus 29 ~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 71 (232)
T PRK04169 29 CESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIE 71 (232)
T ss_pred HhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 3467899999998755433223333444556799999999999
No 191
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=24.41 E-value=2e+02 Score=24.44 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=10.5
Q ss_pred CCCeEEecCCCc
Q 022941 108 KVPWYTTKASKE 119 (289)
Q Consensus 108 ~~P~~~v~GNHD 119 (289)
++|++.||||.-
T Consensus 4 g~pVlFIhG~~G 15 (225)
T PF07819_consen 4 GIPVLFIHGNAG 15 (225)
T ss_pred CCEEEEECcCCC
Confidence 789999999866
No 192
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.93 E-value=84 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 022941 10 TLITQLSLCLALYVALNLGQP 30 (289)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (289)
+++++++++.++..+||+.+=
T Consensus 7 ~~i~~~l~~~~~l~~CnTv~G 27 (48)
T PRK10081 7 AAIFSVLVLSTVLTACNTTRG 27 (48)
T ss_pred HHHHHHHHHHHHHhhhhhhhh
Confidence 344555555566778886543
No 193
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.83 E-value=95 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=13.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhccCCC
Q 022941 1 MAKRPSWVCTLITQLSLCLALYVALNLGQP 30 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (289)
|-|..-+-..+.++++++++++..|...+|
T Consensus 1 MKK~kii~iii~li~i~li~~~~~~~~~~~ 30 (85)
T PF11337_consen 1 MKKKKIILIIIILIVISLIIGIYYFFNGNP 30 (85)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 444343433333444444555555655544
No 194
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.39 E-value=1.7e+02 Score=25.17 Aligned_cols=64 Identities=11% Similarity=-0.077 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHhhCCccE-EEEcCCCCCCCh-hhhhhhcc---CCCCCCCeEEecCCCc
Q 022941 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARF-VINTSELGEDDP-LKQNATWL---FPSLKVPWYTTKASKE 119 (289)
Q Consensus 51 ~f~~~gD~~~g~~~~~~~~~~l~~~~~~~~pdf-vv~~GD~~~~~~-~~~~~~~~---~~~l~~P~~~v~GNHD 119 (289)
-+-+.||.|. .-.++.+.+.- ...-||- -|+.||....+. ..+.+.-. -.+.+..+-.+.||||
T Consensus 47 PVTvCGDIHG---QFyDL~eLFrt--gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHE 115 (306)
T KOG0373|consen 47 PVTVCGDIHG---QFYDLLELFRT--GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHE 115 (306)
T ss_pred CeeEeeccch---hHHHHHHHHHh--cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccch
Confidence 3456899663 23445444321 1223443 578899765443 22222111 1344566789999999
No 195
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=22.19 E-value=44 Score=29.11 Aligned_cols=50 Identities=10% Similarity=-0.024 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCceeee-------cccCCCCCCCCCccEEEEEEeCCC
Q 022941 10 TLITQLSLCLALYVALNLGQPQKSIY-------QRTNGISSNRKGLDFYFISVTGGF 59 (289)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~gD~~ 59 (289)
+-+++.++.+++|+.-..+..--+.+ +-++.|.+.-.....+|++||||.
T Consensus 184 ~qLVPaLaKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~ 240 (274)
T TIGR01658 184 GQLIPSLAKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGW 240 (274)
T ss_pred CccHHHHHHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCCh
Confidence 44667888888888655444432222 001122111233479999999975
No 196
>PRK14347 lipoate-protein ligase B; Provisional
Probab=22.00 E-value=1.2e+02 Score=25.66 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEeeccccccccc
Q 022941 158 ASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEH 193 (289)
Q Consensus 158 ~~~~~Ql~WL~~~L~~~~~~~~iV~~HhP~~~~~~~ 193 (289)
...+.|.+|.++..+....+..+++-|.|.|+.+..
T Consensus 15 ~a~~~q~~~~~~~~~~~~~d~llllEH~pVyT~G~~ 50 (209)
T PRK14347 15 VTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTN 50 (209)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCeeCCCC
Confidence 345567777776655444567889999999998764
No 197
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=21.87 E-value=1.1e+02 Score=26.58 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=24.4
Q ss_pred EEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 179 CIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 179 ~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
-+|+.|||++-...... ......++ ...+.++++ .++|-|+..
T Consensus 59 dlIitHHP~~f~~~~~~--~~~~~~~~-~~~li~~~I-~vy~~Ht~l 101 (249)
T TIGR00486 59 DLIITHHPLIWKPLKRL--IRGIKPGR-LKILLQNDI-SLYSAHTNL 101 (249)
T ss_pred CEEEEcCccccCCcccc--cCCCHHHH-HHHHHHCCC-eEEEeecch
Confidence 48999999966543210 11112233 445677776 457777755
No 198
>PHA03008 hypothetical protein; Provisional
Probab=21.59 E-value=2.2e+02 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=34.1
Q ss_pred eEEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccce----ecCCCeEEEec
Q 022941 178 WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIKY----SRQDSITYMEN 238 (289)
Q Consensus 178 ~~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~~----~~~~gi~~i~~ 238 (289)
.-|++.|-||+..... .... ..|++-+.+-+.++-+.||.-.+. -..+.+.|+.+
T Consensus 162 tDILITHgPP~GhLD~--~vGC----~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~ns 220 (234)
T PHA03008 162 CDILITASPPFAILDD--DLAC----GDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINS 220 (234)
T ss_pred CCEEEeCCCCcccccc--ccCc----HHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEec
Confidence 3499999999876542 1111 234444456678899999965543 22356777654
No 199
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=21.54 E-value=2.5e+02 Score=22.42 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 200 KKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 200 ~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
....+.+.+++++++.+++|+||.-.
T Consensus 69 ~~~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 69 EPYAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 34567788888998999999999965
No 200
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.53 E-value=2.2e+02 Score=26.10 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=37.8
Q ss_pred CCccEEEEEEeCC-CCCChhHHHHHHHHHHHHhhCCccEEEEcCCCCCC
Q 022941 46 KGLDFYFISVTGG-FRPLEQQTLLLKQMEDVAKSYDARFVINTSELGED 93 (289)
Q Consensus 46 ~~~~~~f~~~gD~-~~g~~~~~~~~~~l~~~~~~~~pdfvv~~GD~~~~ 93 (289)
+..++-.++++-. ..+...+.++++++.++.+..+||.++...|-.++
T Consensus 63 ~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsDGaeD 111 (344)
T PF04123_consen 63 EGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSDGAED 111 (344)
T ss_pred cCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEecChhh
Confidence 3557888888663 33556788999999999999999999999996543
No 201
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=21.48 E-value=1.2e+02 Score=26.09 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=22.5
Q ss_pred EEEEeeccccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 179 CIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 179 ~iV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
-+|+.|||++-.+...-... .........+.++++ .+++-|+..
T Consensus 55 dlIItHHP~~f~~~~~~~~~--~~~~~~~~~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 55 DLIITHHPLFFKPLKSLTGD--DYKGKIIEKLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp SEEEESS-SSSSTSSHCHCH--SHHHHHHHHHHHTT--EEEEESHHH
T ss_pred CEEEEcCchhhcCCcccccc--chhhHHHHHHHHCCC-EEEEecccc
Confidence 48999999876554311111 112233344445776 457778765
No 202
>PRK09810 entericidin A; Provisional
Probab=21.37 E-value=1.2e+02 Score=18.53 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=9.7
Q ss_pred HHHHHHHHHhccCCCc
Q 022941 16 SLCLALYVALNLGQPQ 31 (289)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (289)
++++++..+||+.+=.
T Consensus 10 ~~~~~~L~aCNTv~G~ 25 (41)
T PRK09810 10 LLASTLLTGCNTARGF 25 (41)
T ss_pred HHHHHHHhhhhhcccc
Confidence 4444467789865543
No 203
>PRK03011 butyrate kinase; Provisional
Probab=21.31 E-value=1.3e+02 Score=27.69 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHHHhhC--CccEEEEcCCCCCCChhhhhh-hccCCCCCCCeEEecCCCc
Q 022941 72 MEDVAKSY--DARFVINTSELGEDDPLKQNA-TWLFPSLKVPWYTTKASKE 119 (289)
Q Consensus 72 l~~~~~~~--~pdfvv~~GD~~~~~~~~~~~-~~~~~~l~~P~~~v~GNHD 119 (289)
+..+.... +||.||++|=++. ...+.+. .+.++.+ .|+...||+.+
T Consensus 285 I~~l~~~L~gdpD~IVlgGGI~~-~~~l~~~I~~~l~~~-~pv~i~p~~~e 333 (358)
T PRK03011 285 IGAMAAVLKGKVDAIVLTGGLAY-SKRLVERIKERVSFI-APVIVYPGEDE 333 (358)
T ss_pred HHHHHHHhCCCCCEEEEeCcccc-CHHHHHHHHHHHHhh-CCeEEEeCCCH
Confidence 33344445 7999999998886 3333222 2333333 58999999988
No 204
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=20.67 E-value=55 Score=31.22 Aligned_cols=27 Identities=4% Similarity=-0.005 Sum_probs=20.2
Q ss_pred CeEEEeCCCccce-ecCCCeEEEecCCC
Q 022941 215 VNTYLSKHGCIKY-SRQDSITYMENPGL 241 (289)
Q Consensus 215 V~~vl~GH~H~~~-~~~~gi~~i~~g~~ 241 (289)
.|++.+||.|.+. ....|+.++.+++-
T Consensus 419 PDv~~~Ghvh~~g~~~y~gv~~vns~T~ 446 (481)
T COG1311 419 PDVFHTGHVHKFGTGVYEGVNLVNSGTW 446 (481)
T ss_pred CcEEEEccccccceeEEeccceEEeeee
Confidence 3789999999965 55566777776664
No 205
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.53 E-value=1.2e+02 Score=22.43 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=10.5
Q ss_pred CCCeEEecCCCc
Q 022941 108 KVPWYTTKASKE 119 (289)
Q Consensus 108 ~~P~~~v~GNHD 119 (289)
=+|++.+.|+|=
T Consensus 61 lvPl~L~~G~H~ 72 (103)
T cd03413 61 LMPLMLVAGDHA 72 (103)
T ss_pred EEehhheecccc
Confidence 469999999996
No 206
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.49 E-value=2.7e+02 Score=24.53 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHhCCeEEEeCCCcc
Q 022941 201 KIYEPLHHIFMKFGVNTYLSKHGCI 225 (289)
Q Consensus 201 ~~~~~l~~ll~~~~V~~vl~GH~H~ 225 (289)
....++.+.+++++|+++|.--...
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~ 237 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVN 237 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 3456788889999999998644433
No 207
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=20.20 E-value=2.6e+02 Score=25.94 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred CCCeEEEEeec-cccccccccchhhHHhhHHHHHHHHHHhCCeEEEeCCCccc
Q 022941 175 NGQWCIVVGFH-PLVICEEHEEQLEAKKIYEPLHHIFMKFGVNTYLSKHGCIK 226 (289)
Q Consensus 175 ~~~~~iV~~Hh-P~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~vl~GH~H~~ 226 (289)
.++.+||+.|+ --|..... ....+|..-+...+++++..+|-|.-
T Consensus 223 ~adlviv~~HwG~ey~~~p~-------~~q~~~a~~lidAGa~iIvGhhpHvl 268 (372)
T COG2843 223 GADLVIVQPHWGVEYAYEPA-------AGQRALARRLIDAGADIIVGHHPHVL 268 (372)
T ss_pred cCCEEEEeccccccccCCCc-------HHHHHHHHHHHhcCcCeEecCCCCcC
Confidence 35689999998 43443332 11334555566689999999999983
No 208
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.09 E-value=1.5e+02 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=8.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHH
Q 022941 2 AKRPSWVCTLITQLSLCLALYV 23 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (289)
-||....-+-+.+++.++.++|
T Consensus 2 r~k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 2 RRKKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred CCcccchHHHHHHHHHHHHHHH
Confidence 3444333333333333333333
Done!