Query 022944
Match_columns 289
No_of_seqs 360 out of 1609
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 3.4E-33 1.2E-37 239.9 3.8 150 6-169 11-160 (164)
2 3l1p_A POU domain, class 5, tr 100.0 6E-33 2.1E-37 236.2 4.9 151 1-166 3-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 6.8E-33 2.3E-37 233.8 4.2 143 8-166 3-145 (146)
4 3d1n_I POU domain, class 6, tr 100.0 3.7E-32 1.3E-36 230.1 6.3 148 7-165 3-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 7.8E-31 2.7E-35 224.2 5.2 152 7-166 6-159 (160)
6 2dms_A Homeobox protein OTX2; 99.8 1.5E-19 5.2E-24 137.0 8.1 65 100-169 4-68 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 2.9E-19 1E-23 135.2 9.0 64 101-169 5-68 (80)
8 2cue_A Paired box protein PAX6 99.8 2.5E-19 8.4E-24 135.9 7.9 68 101-173 5-72 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 4.6E-19 1.6E-23 133.4 9.0 66 99-169 9-74 (77)
10 1nk2_P Homeobox protein VND; h 99.8 4.3E-19 1.5E-23 133.6 8.3 66 99-169 5-70 (77)
11 2dmt_A Homeobox protein BARH-l 99.8 3.1E-19 1.1E-23 135.3 7.3 65 99-168 13-77 (80)
12 2da3_A Alpha-fetoprotein enhan 99.8 3.2E-19 1.1E-23 134.8 6.5 65 99-168 13-77 (80)
13 1b8i_A Ultrabithorax, protein 99.8 3.1E-19 1.1E-23 135.8 6.3 65 99-168 16-80 (81)
14 2dmu_A Homeobox protein goosec 99.8 5.9E-19 2E-23 130.4 7.6 64 101-169 5-68 (70)
15 2h1k_A IPF-1, pancreatic and d 99.8 5.8E-19 2E-23 127.9 6.7 60 103-167 3-62 (63)
16 2vi6_A Homeobox protein nanog; 99.8 2.2E-19 7.5E-24 129.7 4.3 61 102-167 2-62 (62)
17 1zq3_P PRD-4, homeotic bicoid 99.8 9.6E-19 3.3E-23 128.7 7.7 63 103-170 2-64 (68)
18 2da1_A Alpha-fetoprotein enhan 99.8 4.4E-19 1.5E-23 131.0 5.7 64 101-169 5-68 (70)
19 2cra_A Homeobox protein HOX-B1 99.8 3.5E-19 1.2E-23 131.7 4.8 63 101-168 5-67 (70)
20 2da2_A Alpha-fetoprotein enhan 99.8 4.6E-19 1.6E-23 130.8 5.4 64 100-168 4-67 (70)
21 1ahd_P Antennapedia protein mu 99.8 8.1E-19 2.8E-23 129.2 6.5 62 103-169 2-63 (68)
22 2hdd_A Protein (engrailed home 99.8 6.9E-19 2.4E-23 126.6 6.0 58 103-165 3-60 (61)
23 1ig7_A Homeotic protein MSX-1; 99.8 1E-18 3.4E-23 124.4 6.5 57 104-165 1-57 (58)
24 2l7z_A Homeobox protein HOX-A1 99.8 1.1E-18 3.7E-23 130.2 6.8 65 100-169 4-68 (73)
25 1fjl_A Paired protein; DNA-bin 99.8 1.5E-18 5E-23 131.8 7.6 65 100-169 15-79 (81)
26 2da4_A Hypothetical protein DK 99.8 7.6E-19 2.6E-23 133.1 5.7 66 99-169 4-73 (80)
27 2e1o_A Homeobox protein PRH; D 99.8 1.6E-18 5.6E-23 128.1 7.4 63 102-169 6-68 (70)
28 2cuf_A FLJ21616 protein; homeo 99.7 2.4E-18 8.2E-23 134.6 8.6 66 100-170 4-84 (95)
29 3a01_A Homeodomain-containing 99.7 2.2E-18 7.5E-23 134.5 8.4 67 99-170 13-79 (93)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 1.4E-18 4.8E-23 127.8 6.8 62 103-169 2-63 (68)
31 2kt0_A Nanog, homeobox protein 99.7 1E-18 3.5E-23 133.4 6.2 65 99-168 18-82 (84)
32 1jgg_A Segmentation protein EV 99.7 1.6E-18 5.5E-23 124.3 6.5 58 104-166 2-59 (60)
33 1yz8_P Pituitary homeobox 2; D 99.7 8.2E-19 2.8E-23 129.0 4.8 63 102-169 2-64 (68)
34 1bw5_A ISL-1HD, insulin gene e 99.7 9.9E-19 3.4E-23 127.7 4.7 62 102-168 2-63 (66)
35 2djn_A Homeobox protein DLX-5; 99.7 7.1E-19 2.4E-23 130.0 3.8 63 101-168 5-67 (70)
36 2m0c_A Homeobox protein arista 99.7 2.5E-18 8.5E-23 128.2 6.1 65 100-169 6-70 (75)
37 2r5y_A Homeotic protein sex co 99.7 1.7E-18 5.9E-23 133.5 5.1 63 100-167 25-87 (88)
38 3rkq_A Homeobox protein NKX-2. 99.7 3.8E-18 1.3E-22 120.9 6.4 57 103-164 2-58 (58)
39 2k40_A Homeobox expressed in E 99.7 2.6E-18 8.9E-23 125.8 5.7 62 103-169 1-62 (67)
40 2hi3_A Homeodomain-only protei 99.7 7.5E-18 2.6E-22 125.5 8.1 62 103-169 2-64 (73)
41 2da6_A Hepatocyte nuclear fact 99.7 9E-18 3.1E-22 133.0 9.0 73 100-173 3-92 (102)
42 3a02_A Homeobox protein arista 99.7 2.8E-18 9.7E-23 123.0 5.5 58 106-168 2-59 (60)
43 2ecb_A Zinc fingers and homeob 99.7 6.8E-18 2.3E-22 130.9 7.7 58 109-171 17-74 (89)
44 1akh_A Protein (mating-type pr 99.7 2.9E-18 1E-22 123.1 5.0 59 101-164 3-61 (61)
45 1uhs_A HOP, homeodomain only p 99.7 1.1E-17 3.8E-22 124.2 8.0 61 104-169 2-63 (72)
46 2ecc_A Homeobox and leucine zi 99.7 8E-18 2.7E-22 126.8 7.1 59 106-169 6-64 (76)
47 3a03_A T-cell leukemia homeobo 99.7 6.5E-18 2.2E-22 119.7 6.2 54 108-166 2-55 (56)
48 1b72_A Protein (homeobox prote 99.7 7E-18 2.4E-22 132.4 6.8 64 101-169 32-95 (97)
49 1wh5_A ZF-HD homeobox family p 99.7 4.5E-18 1.6E-22 129.3 5.0 63 99-165 13-78 (80)
50 2dmp_A Zinc fingers and homeob 99.7 2.4E-17 8.1E-22 127.7 8.9 61 108-173 18-78 (89)
51 2da5_A Zinc fingers and homeob 99.7 1.3E-17 4.3E-22 125.1 7.2 61 104-169 8-68 (75)
52 1b72_B Protein (PBX1); homeodo 99.7 7.8E-18 2.7E-22 129.3 5.9 64 103-171 1-67 (87)
53 2ly9_A Zinc fingers and homeob 99.7 1.4E-17 4.7E-22 124.2 6.2 63 102-169 5-67 (74)
54 2dmn_A Homeobox protein TGIF2L 99.7 4.6E-17 1.6E-21 124.4 9.0 69 101-173 5-75 (83)
55 1puf_B PRE-B-cell leukemia tra 99.7 2.2E-17 7.4E-22 122.9 6.9 62 103-169 1-65 (73)
56 2dn0_A Zinc fingers and homeob 99.7 1E-17 3.6E-22 125.7 5.0 62 103-169 8-69 (76)
57 3nar_A ZHX1, zinc fingers and 99.7 1.1E-17 3.7E-22 131.1 5.3 64 100-168 22-85 (96)
58 1wh7_A ZF-HD homeobox family p 99.7 9.3E-18 3.2E-22 127.7 4.2 62 99-165 13-78 (80)
59 1x2n_A Homeobox protein pknox1 99.7 6.8E-17 2.3E-21 120.2 7.5 65 101-169 5-71 (73)
60 1du6_A PBX1, homeobox protein 99.7 2.1E-17 7.1E-22 119.9 3.5 58 103-165 3-63 (64)
61 1lfb_A Liver transcription fac 99.7 2.1E-17 7E-22 130.6 2.6 69 100-169 6-91 (99)
62 2cqx_A LAG1 longevity assuranc 99.6 3.7E-17 1.3E-21 121.9 3.2 59 104-167 9-68 (72)
63 3nau_A Zinc fingers and homeob 99.6 1.8E-16 6.2E-21 116.0 5.7 52 111-167 12-63 (66)
64 1k61_A Mating-type protein alp 99.6 2.3E-16 7.9E-21 112.9 6.0 57 106-166 1-59 (60)
65 2l9r_A Homeobox protein NKX-3. 99.6 9.7E-17 3.3E-21 118.8 3.4 57 108-169 9-65 (69)
66 1wi3_A DNA-binding protein SAT 99.6 4E-16 1.4E-20 114.4 5.8 62 99-164 3-64 (71)
67 2e19_A Transcription factor 8; 99.6 2E-16 6.8E-21 115.3 3.4 54 107-165 7-60 (64)
68 1mnm_C Protein (MAT alpha-2 tr 99.6 7.8E-16 2.7E-20 118.3 6.7 59 102-164 26-86 (87)
69 1le8_B Mating-type protein alp 99.6 1.1E-15 3.9E-20 116.5 5.9 61 104-168 3-65 (83)
70 1x2m_A LAG1 longevity assuranc 99.6 4.5E-16 1.5E-20 113.5 3.3 49 112-165 9-58 (64)
71 1ic8_A Hepatocyte nuclear fact 99.6 1.4E-16 4.9E-21 139.8 0.1 139 11-165 29-193 (194)
72 2d5v_A Hepatocyte nuclear fact 99.6 1.2E-15 4E-20 130.2 4.2 64 100-168 94-157 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 6.8E-15 2.3E-19 108.0 4.7 56 109-169 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 1.5E-13 5.2E-18 122.3 5.2 64 99-163 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 2.4E-13 8.2E-18 100.2 5.0 46 112-162 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 2.6E-12 8.9E-17 99.3 7.2 60 108-171 10-71 (89)
77 1mh3_A Maltose binding-A1 home 99.2 4.4E-12 1.5E-16 119.9 3.1 56 104-164 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 4.2E-09 1.4E-13 68.3 1.8 22 150-171 1-22 (37)
79 2ys9_A Homeobox and leucine zi 93.4 0.052 1.8E-06 39.6 3.1 39 115-158 18-56 (70)
80 1hlv_A CENP-B, major centromer 67.7 9.8 0.00033 29.3 5.7 50 106-163 4-53 (131)
81 2glo_A Brinker CG9653-PA; prot 67.3 4.9 0.00017 27.1 3.3 46 107-158 3-48 (59)
82 2elh_A CG11849-PA, LD40883P; s 62.0 9.5 0.00032 27.7 4.3 45 103-157 16-60 (87)
83 3hug_A RNA polymerase sigma fa 60.2 12 0.00041 27.2 4.6 49 110-168 38-86 (92)
84 2o8x_A Probable RNA polymerase 51.3 15 0.00052 24.7 3.6 47 109-165 15-61 (70)
85 1jko_C HIN recombinase, DNA-in 50.0 6.7 0.00023 24.5 1.5 42 110-161 6-47 (52)
86 1tc3_C Protein (TC3 transposas 49.4 22 0.00074 21.5 3.9 40 109-158 5-44 (51)
87 2rgt_A Fusion of LIM/homeobox 49.2 0.25 8.6E-06 41.0 -7.2 30 101-131 134-163 (169)
88 1fi6_A EH domain protein REPS1 48.2 17 0.00059 26.2 3.7 46 108-157 1-50 (92)
89 2x7l_M HIV REV; nuclear export 47.8 15 0.00051 29.0 3.3 35 116-169 16-50 (115)
90 1p4w_A RCSB; solution structur 46.1 31 0.0011 25.9 5.0 46 107-163 32-77 (99)
91 1s7o_A Hypothetical UPF0122 pr 43.0 32 0.0011 26.4 4.7 49 109-167 22-70 (113)
92 3mzy_A RNA polymerase sigma-H 42.5 27 0.00093 26.9 4.3 49 109-168 109-157 (164)
93 2lv7_A Calcium-binding protein 41.7 45 0.0016 24.5 5.3 48 106-157 26-79 (100)
94 2jn6_A Protein CGL2762, transp 39.8 24 0.00083 25.6 3.4 42 107-157 3-45 (97)
95 1c07_A Protein (epidermal grow 39.7 19 0.00066 26.1 2.8 46 108-157 2-51 (95)
96 3c57_A Two component transcrip 39.0 32 0.0011 25.2 4.0 47 108-165 26-72 (95)
97 1ku3_A Sigma factor SIGA; heli 37.2 43 0.0015 22.9 4.2 46 109-164 10-59 (73)
98 3lph_A Protein REV; helix-loop 37.1 24 0.00081 25.6 2.7 36 115-169 18-53 (72)
99 2qko_A Possible transcriptiona 35.3 16 0.00054 29.6 1.9 46 114-165 33-78 (215)
100 1xsv_A Hypothetical UPF0122 pr 33.9 40 0.0014 25.7 3.9 48 110-167 26-73 (113)
101 1fse_A GERE; helix-turn-helix 33.6 51 0.0017 22.1 4.1 47 107-164 9-55 (74)
102 1je8_A Nitrate/nitrite respons 32.4 26 0.00088 25.0 2.4 47 107-164 19-65 (82)
103 3i5g_B Myosin regulatory light 31.3 74 0.0025 24.9 5.3 41 106-150 6-50 (153)
104 2rnj_A Response regulator prot 31.3 43 0.0015 24.0 3.6 46 108-164 28-73 (91)
105 2k27_A Paired box protein PAX- 29.4 2E+02 0.0069 22.4 8.0 47 107-157 81-133 (159)
106 1tty_A Sigma-A, RNA polymerase 29.2 46 0.0016 23.8 3.4 50 109-164 18-67 (87)
107 2q24_A Putative TETR family tr 28.9 19 0.00065 28.6 1.3 42 113-161 19-60 (194)
108 1or7_A Sigma-24, RNA polymeras 28.8 52 0.0018 26.2 4.0 48 110-167 141-188 (194)
109 2p7v_B Sigma-70, RNA polymeras 28.7 41 0.0014 22.7 2.9 50 109-164 5-54 (68)
110 1iuf_A Centromere ABP1 protein 28.0 1.1E+02 0.0037 24.1 5.7 52 104-158 6-59 (144)
111 2iai_A Putative transcriptiona 27.8 45 0.0015 27.3 3.5 42 114-161 35-76 (230)
112 1rp3_A RNA polymerase sigma fa 27.2 57 0.0019 26.8 4.1 49 109-167 187-235 (239)
113 2hxo_A Putative TETR-family tr 26.0 71 0.0024 26.9 4.5 54 104-163 10-64 (237)
114 3dcf_A Transcriptional regulat 25.4 54 0.0018 26.0 3.5 42 114-161 36-77 (218)
115 2wl8_A Peroxisomal biogenesis 25.3 70 0.0024 25.5 4.0 27 41-67 51-77 (126)
116 2pmy_A RAS and EF-hand domain- 25.1 35 0.0012 24.1 2.0 47 107-157 18-68 (91)
117 2rn7_A IS629 ORFA; helix, all 23.8 90 0.0031 22.8 4.3 47 107-157 4-52 (108)
118 1x3u_A Transcriptional regulat 23.5 42 0.0014 23.0 2.1 44 110-164 17-60 (79)
119 2i10_A Putative TETR transcrip 23.2 51 0.0017 26.4 2.9 47 112-164 14-60 (202)
120 1j7q_A CAVP, calcium vector pr 22.1 1.1E+02 0.0038 20.7 4.2 45 108-156 6-59 (86)
121 3ulq_B Transcriptional regulat 22.1 76 0.0026 23.1 3.4 47 104-161 24-70 (90)
122 1u78_A TC3 transposase, transp 21.6 80 0.0027 23.8 3.6 41 108-158 5-45 (141)
123 2q1z_A RPOE, ECF SIGE; ECF sig 20.8 34 0.0012 27.2 1.3 24 142-165 158-181 (184)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.97 E-value=3.4e-33 Score=239.91 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhcCCCC
Q 022944 6 IREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRL 85 (289)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~~~~~sg~~~ 85 (289)
..+|||+||++||++||+||++|++|++++|.+||+++++++|++|++....++++|+..+.+.+|+...........
T Consensus 11 ~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~-- 88 (164)
T 2xsd_C 11 SSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPT-- 88 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------
T ss_pred chhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCc--
Confidence 358999999999999999999999999999999999999999999999999999999999999999865443321110
Q ss_pred CCccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 86 ~~~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
. .++ ....++.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 89 -~--~~~----~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 89 -N--LDK----IAAQGRKRKKRTSIEVGVKGALESHFLK-CPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------------------------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTB
T ss_pred -c--ccc----ccccccCCCCceeccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhh
Confidence 0 011 1134567889999999999999999999 9999999999999999 99999999999999999999
Q ss_pred Hhhh
Q 022944 166 KQLV 169 (289)
Q Consensus 166 ~~~~ 169 (289)
..+.
T Consensus 157 ~~~~ 160 (164)
T 2xsd_C 157 MTPA 160 (164)
T ss_dssp SCC-
T ss_pred ccCC
Confidence 7654
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.97 E-value=6e-33 Score=236.19 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=129.1
Q ss_pred CcchhHHHHHHHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhh-
Q 022944 1 MEWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLA- 79 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~~~~- 79 (289)
|+-+.+.++||+||++||++||+||++|+||++++|.+||++|++++|++|++...+++++|+..+.+.+|+.......
T Consensus 3 ~d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~ 82 (155)
T 3l1p_A 3 MDMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNEN 82 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995443211
Q ss_pred hcCCCCCCccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhh
Q 022944 80 AAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNR 159 (289)
Q Consensus 80 ~sg~~~~~~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNR 159 (289)
..... .... ..+++||.|+.|+..|+..||..|.. ++||+..+|.+||..| +|++++|+||||||
T Consensus 83 ~~~~~----~~~~------~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yps~~~r~~LA~~l----~L~~~qV~vWFqNR 147 (155)
T 3l1p_A 83 LQEIS----KSET------LVQARKRKRTSIENRVRWSLETMFLK-SPKPSLQQITHIANQL----GLEKDVVRVWFSNR 147 (155)
T ss_dssp HHHSS----CC---------CCCSCCCCCCCCHHHHHHHHTTTTT-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHH
T ss_pred ccccc----cccc------cccCCCCCCcccCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHc----CCChhheeeccccc
Confidence 00110 0000 11357788999999999999999999 9999999999999999 99999999999999
Q ss_pred HHHHHHH
Q 022944 160 RARSKRK 166 (289)
Q Consensus 160 RaK~Kr~ 166 (289)
|+|+||.
T Consensus 148 R~k~Kr~ 154 (155)
T 3l1p_A 148 RQKGKRS 154 (155)
T ss_dssp HHHHHC-
T ss_pred cccccCC
Confidence 9999974
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.97 E-value=6.8e-33 Score=233.78 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=121.4
Q ss_pred HHHHHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhcCCCCCC
Q 022944 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGN 87 (289)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~~~~~sg~~~~~ 87 (289)
+|||+||++||++||+||.+|+||+.++|.+||+++|+++|++|+++...++++|+..+.+.+|+....... +
T Consensus 3 ~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~--~----- 75 (146)
T 1au7_A 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVG--A----- 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhccc--C-----
Confidence 689999999999999999999999999999999999999999999999999999999999999986544321 0
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHH
Q 022944 88 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (289)
Q Consensus 88 ~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (289)
. .. ...+..++.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||+
T Consensus 76 ~-~~---~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 76 L-YN---EKVGANERKRKRRTTISIAAKDALERHFGE-HSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred c-cC---cccCCCCCCCCCCcCccHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 0 01 111134567889999999999999999999 9999999999999999 999999999999999999985
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.97 E-value=3.7e-32 Score=230.15 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhcCCCCC
Q 022944 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~~~~~sg~~~~ 86 (289)
.||+++||++||++||+||.+|++|+.|+|.+||+++|+.+|++|.+...+++++|...+.+.+|+.........+....
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~ 82 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNL 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999965443322222111
Q ss_pred CccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 87 ~~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
... ..+...+.||.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 83 ~~~------~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 83 MEF------VGGEPSKKRKRRTSFTPQAIEALNAYFEK-NPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHH------HCSSCCCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred ccc------CCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 000 11134567889999999999999999999 9999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.96 E-value=7.8e-31 Score=224.17 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhcCCCCC
Q 022944 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~~~~~sg~~~~ 86 (289)
-+||++||+.||.+|+++|.+|++++.+.|.+||+++++.+|.+|+.+..+++++|+..+.+.+|+.............+
T Consensus 6 ~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~ 85 (160)
T 1e3o_C 6 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLS 85 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999955432211111111
Q ss_pred C--ccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 87 N--IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 87 ~--~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
. ....|. .. +..+.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|
T Consensus 86 s~~~~~~~~--~~-~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 86 SPSALNSPG--IE-GLSRRRKKRTSIETNIRVALEKSFME-NQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCC--CC-CCCCCCcCccccCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhh
Confidence 1 111111 11 23467889999999999999999999 9999999999999999 9999999999999999999
Q ss_pred HH
Q 022944 165 RK 166 (289)
Q Consensus 165 r~ 166 (289)
|+
T Consensus 158 r~ 159 (160)
T 1e3o_C 158 RI 159 (160)
T ss_dssp SC
T ss_pred cc
Confidence 85
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.5e-19 Score=136.97 Aligned_cols=65 Identities=32% Similarity=0.533 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++.+|.|+.|+.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3467889999999999999999999 9999999999999999 999999999999999999998765
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=135.20 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.+.+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI-NHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHH
Confidence 457889999999999999999999 9999999999999999 999999999999999999998765
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.5e-19 Score=135.91 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcccc
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSA 173 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~~ 173 (289)
...+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER-THYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 357889999999999999999999 9999999999999999 9999999999999999999988775443
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=4.6e-19 Score=133.44 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..+..+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLF-NMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 45568889999999999999999999 9999999999999999 999999999999999999998765
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=4.3e-19 Score=133.59 Aligned_cols=66 Identities=27% Similarity=0.273 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..++.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ-QRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcc
Confidence 45567889999999999999999999 9999999999999999 999999999999999999998776
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=135.31 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
..++.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEK-QKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 34567889999999999999999999 9999999999999999 99999999999999999998654
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=134.77 Aligned_cols=65 Identities=31% Similarity=0.449 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
...+.+|.|+.||.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL-DSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 34568889999999999999999999 8999999999999999 99999999999999999998654
No 13
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=3.1e-19 Score=135.78 Aligned_cols=65 Identities=28% Similarity=0.365 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
.....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||..+
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 44567889999999999999999999 9999999999999999 99999999999999999998653
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=130.38 Aligned_cols=64 Identities=30% Similarity=0.452 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
...+|.|+.|+.+|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCCC
Confidence 357789999999999999999999 9999999999999999 999999999999999999997543
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=5.8e-19 Score=127.90 Aligned_cols=60 Identities=33% Similarity=0.426 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
.+|.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF-NKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 6788999999999999999999 9999999999999999 9999999999999999999863
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.76 E-value=2.2e-19 Score=129.67 Aligned_cols=61 Identities=31% Similarity=0.416 Sum_probs=53.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK-QKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 46788999999999999999999 9999999999999999 9999999999999999999863
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=9.6e-19 Score=128.68 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=59.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhc
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (289)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhccc
Confidence 6789999999999999999999 9999999999999999 9999999999999999999987663
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-19 Score=130.96 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.+.+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDI-NNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhccc
Confidence 457889999999999999999999 9999999999999999 999999999999999999986543
No 19
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.5e-19 Score=131.70 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
.+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAA-NKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 457889999999999999999999 9999999999999999 99999999999999999998654
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-19 Score=130.84 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
..+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDA-NAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 3457889999999999999999999 9999999999999999 99999999999999999998654
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=8.1e-19 Score=129.18 Aligned_cols=62 Identities=31% Similarity=0.375 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.+|.|+.||..|+..||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhccc
Confidence 5788999999999999999999 9999999999999999 999999999999999999997754
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=6.9e-19 Score=126.64 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
.+|.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE-NRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999 9999999999999999 99999999999999999987
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1e-18 Score=124.36 Aligned_cols=57 Identities=40% Similarity=0.496 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
||.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ-KQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999 9999999999999999 99999999999999999997
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=1.1e-18 Score=130.17 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYAT-NKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3457889999999999999999999 9999999999999999 999999999999999999987654
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=1.5e-18 Score=131.84 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|++...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFER-TQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhccc
Confidence 4567889999999999999999999 9999999999999999 999999999999999999997653
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-19 Score=133.10 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGT----GTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~----~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..++.+|.|+.|+.+|+.+||.+|.. + +||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 34568889999999999999999999 9 999999999999999 999999999999999999996544
No 27
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=128.06 Aligned_cols=63 Identities=30% Similarity=0.313 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..++.|+.|+.+|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+....
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET-QKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCCC
Confidence 46778999999999999999999 9999999999999999 999999999999999999997653
No 28
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.4e-18 Score=134.56 Aligned_cols=66 Identities=30% Similarity=0.503 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---------------cccchhhchhhhhHHHHH
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------ISETNVYNWFQNRRARSK 164 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~g---------------Ls~~qV~vWFQNRRaK~K 164 (289)
..+.+|.|+.|++.|+.+||.+|+. ++||+..+|.+||..| + |++.+|+|||||||+|+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999 9999999999999999 8 999999999999999999
Q ss_pred HHhhhc
Q 022944 165 RKQLVS 170 (289)
Q Consensus 165 r~~~~~ 170 (289)
++....
T Consensus 79 r~~~~~ 84 (95)
T 2cuf_A 79 RRANIA 84 (95)
T ss_dssp HHHHCC
T ss_pred HHhhcc
Confidence 988773
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=2.2e-18 Score=134.47 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhc
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (289)
...+.+|.|+.||..|+..||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK-QKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHH
Confidence 34567889999999999999999999 9999999999999999 9999999999999999999987764
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=127.78 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.+|.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ-QKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhH
Confidence 5788999999999999999999 9999999999999999 999999999999999999997765
No 31
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=133.39 Aligned_cols=65 Identities=31% Similarity=0.372 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
...+.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQR-QKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999 9999999999999999 99999999999999999998664
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=124.31 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHH
Q 022944 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (289)
||.|+.||..|+..||..|.. ++||+..++.+||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK-ENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 678999999999999999999 9999999999999999 999999999999999999985
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=8.2e-19 Score=128.97 Aligned_cols=63 Identities=35% Similarity=0.487 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR-NRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT-CSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhc
Confidence 46789999999999999999999 9999999999999999 999999999999999999998765
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=9.9e-19 Score=127.72 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
+.+|.|+.||.+|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA-NPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 36789999999999999999999 9999999999999999 99999999999999999988653
No 35
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-19 Score=130.03 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
.+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK-TQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 457889999999999999999999 9999999999999999 99999999999999999988543
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=128.21 Aligned_cols=65 Identities=31% Similarity=0.482 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQK-THYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 4467888999999999999999999 8999999999999999 999999999999999999986654
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.73 E-value=1.7e-18 Score=133.48 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
.+..+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 4457889999999999999999999 9999999999999999 9999999999999999999864
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=120.90 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ-QRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 5678999999999999999999 8999999999999999 9999999999999999986
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=125.85 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.||.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 3678999999999999999999 9999999999999999 999999999999999999986654
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=7.5e-18 Score=125.55 Aligned_cols=62 Identities=29% Similarity=0.414 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIFD-QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~-~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++.|+.|+..|+.+||..|. . ++||+..+|.+||..| ||++.+|+|||||||+|+|+....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999 7 8999999999999999 999999999999999999998754
No 41
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=133.05 Aligned_cols=73 Identities=34% Similarity=0.570 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------cC----CcccchhhchhhhhHHH
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------HG----QISETNVYNWFQNRRAR 162 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~-------------~~----gLs~~qV~vWFQNRRaK 162 (289)
.++.||.|+.|++.|+.+||..|+. ++||+..+|++||..|.. |+ .|++.+|+|||||||+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~-~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 4568889999999999999999999 899999999999999932 34 78999999999999999
Q ss_pred HHHHhhhcccc
Q 022944 163 SKRKQLVSSSA 173 (289)
Q Consensus 163 ~Kr~~~~~~~~ 173 (289)
+|++++.....
T Consensus 82 ~kr~~~~~~~~ 92 (102)
T 2da6_A 82 EAFRQKLAMDA 92 (102)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHhhHhhhcc
Confidence 99988775443
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=2.8e-18 Score=123.00 Aligned_cols=58 Identities=31% Similarity=0.518 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
.|+.||..|+.+||..|.. ++||+..++.+||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999 9999999999999999 99999999999999999998754
No 43
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=6.8e-18 Score=130.93 Aligned_cols=58 Identities=14% Similarity=0.359 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcc
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (289)
.||.+||.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|||++.+...
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999 9999999999999999 99999999999999999998765543
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=2.9e-18 Score=123.15 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
++.+|.|+.|+..|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 457789999999999999999999 8999999999999999 9999999999999999975
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=124.21 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 104 ARQRWTPTPVQLQILESIFD-QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~-~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.+.|+.|+..|+.+||..|. . ++||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccC
Confidence 35789999999999999999 6 7999999999999999 999999999999999999998754
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8e-18 Score=126.79 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.|..||.+|+.+||..|.. ++||+..+|.+||..+ ||++++|+|||||||+|+|+.+..
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHH
Confidence 4667999999999999999 9999999999999999 999999999999999999997655
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=119.65 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHH
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (289)
|.|+..|+..||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR-QKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh-cCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 67999999999999999 9999999999999999 999999999999999999985
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=7e-18 Score=132.37 Aligned_cols=64 Identities=33% Similarity=0.393 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
...+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF-NKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 457888999999999999999999 9999999999999999 999999999999999999998764
No 49
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=4.5e-18 Score=129.31 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQG---TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~---~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
..++.||.||.||.+|+..||..|+.. ++||+..+|.+||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 345688899999999999999999972 5899999999999999 99999999999999999774
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=127.66 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcccc
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSA 173 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~~ 173 (289)
..||.+||.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+........
T Consensus 18 k~~t~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~~~ 78 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK-SSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVLDS 78 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCCCC
T ss_pred ccCCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhhcc
Confidence 34899999999999999 9999999999999999 9999999999999999999877664433
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=125.08 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++|..||.+|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ-NPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345677999999999999999 9999999999999999 999999999999999999997765
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=7.8e-18 Score=129.26 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcc
Q 022944 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F---~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (289)
.||.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+|+......
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccccc
Confidence 36789999999999999999 78 8999999999999999 99999999999999999999876543
No 53
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=124.16 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..++.|+.|+.+|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK-NQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 46778999999999999999999 9999999999999999 999999999999999999986644
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=124.41 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcccc
Q 022944 101 KISARQRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSA 173 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~--~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~~ 173 (289)
.+.++.|+.|+..|+.+||.+|... ++||+..+|.+||..+ +|++.+|+|||||||+|+|+........
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~~~ 75 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQRRN 75 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhccC
Confidence 3477889999999999999999871 4999999999999999 9999999999999999999877664433
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=2.2e-17 Score=122.87 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F---~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.||.|+.|+..|+.+||.+| .. ++||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhcc-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999 78 8999999999999999 999999999999999999987655
No 56
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=125.69 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..+.|+.||.+|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR-NQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-SSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 4556899999999999999999 9999999999999999 999999999999999999986654
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=131.10 Aligned_cols=64 Identities=28% Similarity=0.415 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVR-TQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhcc
Confidence 3456788999999999999999999 9999999999999999 99999999999999999998654
No 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=9.3e-18 Score=127.68 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQG----TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~----~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
...+.||.||.||.+|+..|| .|... ++||+..+|.+||..| +|++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 78872 5999999999999999 99999999999999999875
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=6.8e-17 Score=120.18 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 101 KISARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~--~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
++.++.|+.|+..|+.+||.+|.. .++||+..++.+||..+ +|++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 457788999999999999999964 27999999999999999 999999999999999999987654
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=119.86 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F---~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
.++.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999 88 8999999999999999 99999999999999999876
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=2.1e-17 Score=130.62 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--------------CC---cccchhhchhhhhHHH
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH--------------GQ---ISETNVYNWFQNRRAR 162 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~--------------~g---Ls~~qV~vWFQNRRaK 162 (289)
.++.||.|+.|++.|+.+||..|.. ++||+..+|.+||..|... .| |++.+|+|||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 4568889999999999999999999 9999999999999993211 28 9999999999999999
Q ss_pred HHHHhhh
Q 022944 163 SKRKQLV 169 (289)
Q Consensus 163 ~Kr~~~~ 169 (289)
+|+++..
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 8877655
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=3.7e-17 Score=121.87 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
.+.|.+++.+|+.+||..| .. ++||+..+|.+||..| +|++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~-~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV-TKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3456667888999999999 88 9999999999999999 9999999999999999999743
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=115.95 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 111 TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 111 t~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
|.+|+.+||..|.. ++||+..+|.+||..+ ||++++|++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~-~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQ-SQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHG-GGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 78999999999999 9999999999999999 9999999999999999999864
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=2.3e-16 Score=112.88 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHH
Q 022944 106 QRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~--~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (289)
+|+.|+.+|+.+||.+|... ++||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 37899999999999999983 5999999999999999 999999999999999999873
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-17 Score=118.79 Aligned_cols=57 Identities=35% Similarity=0.451 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
..+|..|+..||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||....
T Consensus 9 ~~~t~~ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH-QKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 46799999999999999 9999999999999999 999999999999999999986644
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4e-16 Score=114.42 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
+.+..+|.||.|+.+||.+|+.+|+.-++||+...|..||.+| ||++++|+|||||||.-.+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 3456889999999999999999999845999999999999999 9999999999999998643
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=115.34 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
+..++..|+..||..|.. ++||+..+|.+||..| +|++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL-NAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 345679999999999999 9999999999999999 99999999999999998765
No 68
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=7.8e-16 Score=118.30 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=54.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 102 ISARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~--~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
+.++.|+.|+.+|+.+||.+|.. .++||+..+|.+||..+ ||++.+|+|||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 45667999999999999999988 25999999999999999 9999999999999999987
No 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=1.1e-15 Score=116.51 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 104 ARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~--~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
++.|++|+..|+.+||.+|.. .++||+..++.+||..+ ||++.+|+|||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccccc
Confidence 345667999999999999987 45999999999999999 99999999999999999998644
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=4.5e-16 Score=113.54 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=45.6
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 112 PVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 112 ~~Ql~~LE~~F-~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
+.++.+||+.| .. ++||+..+|.+||..| +|+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAI-TKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 35799999999 56 8999999999999999 99999999999999999886
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=1.4e-16 Score=139.80 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=82.1
Q ss_pred HHHHHhhhhhhcccCCcCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh-----hhhhcCCCC
Q 022944 11 QQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQ-----DLAAAGGRL 85 (289)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~~l~~~~k~l~~~~-----~~~~sg~~~ 85 (289)
..++...+....++|.+|.+++-.. .+|+..|.++..........+.. .+..|....+ .+...+.
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~------GiSqs~ISr~l~~~~~~~~~kra--aly~W~~~~~~~i~~~~~~~~~-- 98 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTT------GLNQSHLSQHLNKGTPMKTQKRA--ALYTWYVRKQREVAQQFTHAGQ-- 98 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH------CCCHHHHHHHHHSBCCCCHHHHH--HHHHHHHHHTTTTHHHHCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHh------CCChHHHHHHHhcCccccccccc--cchhhHHHhhhhhhccccCCCC--
Confidence 3456667777777888888776433 36777777764322111111111 1111211110 0110000
Q ss_pred CCccCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------------------
Q 022944 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ------------------- 146 (289)
Q Consensus 86 ~~~~~~p~~~~~g~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~g------------------- 146 (289)
+....+.. ......++.||.|+.|++.|+.+||+.|.. ++||+..+|.+||..| +
T Consensus 99 ~~~~~~~~-~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~-~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~ 172 (194)
T 1ic8_A 99 GGLIEEPT-GDELPTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGS 172 (194)
T ss_dssp -------------------CCCCCCCHHHHHHHHHHHHH-HCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGG
T ss_pred CCCCCCCc-ccccccccCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----Cchhhccccccccccccccc
Confidence 00001111 111144678899999999999999999999 8999999999999999 7
Q ss_pred --cccchhhchhhhhHHHHHH
Q 022944 147 --ISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 147 --Ls~~qV~vWFQNRRaK~Kr 165 (289)
|++.+|+|||||||+|+|.
T Consensus 173 ~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 173 NLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp GCCCHHHHHHHHHHHHHHCC-
T ss_pred cccCccccchhchhhhhhhhc
Confidence 9999999999999999775
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.56 E-value=1.2e-15 Score=130.22 Aligned_cols=64 Identities=33% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
..+.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE-NKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 3457889999999999999999999 8999999999999999 99999999999999999887443
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=6.8e-15 Score=107.97 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 109 TPTPVQLQILESIFD---QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~---~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.|+.+|+.+|+.+|. . ++||+..++.+||..+ +|++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~-~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLT-HPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 8 8999999999999999 999999999999999999986544
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=122.34 Aligned_cols=64 Identities=34% Similarity=0.595 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------c----CCcccchhhchhhhhHH
Q 022944 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------H----GQISETNVYNWFQNRRA 161 (289)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~-------------~----~gLs~~qV~vWFQNRRa 161 (289)
..++.||.|+.|++.|+.+||.+|.. ++||+..+|++||..|.. | ..|++.+|+|||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 56678899999999999999999999 999999999999999931 0 12899999999999998
Q ss_pred HH
Q 022944 162 RS 163 (289)
Q Consensus 162 K~ 163 (289)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=100.21 Aligned_cols=46 Identities=15% Similarity=0.474 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHH
Q 022944 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (289)
Q Consensus 112 ~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (289)
.+|+.+||.+|.. |++|+..++..||..+ ||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~-n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM-NMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 5799999999999 9999999999999999 99999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=99.32 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhhcc
Q 022944 108 WTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~--~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (289)
-.|+.+++.+|+.+|.. .++||+..++.+||..+ ||++.||++||+|||.|.|+......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46889999999999975 36999999999999999 99999999999999999998776543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.20 E-value=4.4e-12 Score=119.87 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
++.|+.++..|+..||+.|.. ++||+..+|.+||.+| +|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~-~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 456788999999999999999 9999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.70 E-value=4.2e-09 Score=68.34 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.4
Q ss_pred chhhchhhhhHHHHHHHhhhcc
Q 022944 150 TNVYNWFQNRRARSKRKQLVSS 171 (289)
Q Consensus 150 ~qV~vWFQNRRaK~Kr~~~~~~ 171 (289)
+||+|||||||+||||......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999888743
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.44 E-value=0.052 Score=39.59 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhh
Q 022944 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (289)
Q Consensus 115 l~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (289)
.+.|+.+|.. .+.+...+...|+.+. +|+..+|+-||--
T Consensus 18 ~e~L~~Yy~~-hk~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAA-HQQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHH-TCCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred chHHHHHHHH-hcccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 4699999999 8999999999999999 9999999999953
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.70 E-value=9.8 Score=29.25 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHH
Q 022944 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (289)
.|..+|.++...+-..+.. +..... .+||..+ |++...|..|..+++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~-~g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE-NPDLRK---GEIARRF----NIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH-CTTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH-CCCCcH---HHHHHHh----CCCHHHHHHHHhchhhhc
Confidence 5778999998777666655 455443 3689999 999999999998776543
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=67.30 E-value=4.9 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhh
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (289)
|..|+++....+..++.. .........++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~--g~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN--DNDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH--CTTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc--CCCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 457888887666555554 233122355899999 9999999999754
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=62.01 E-value=9.5 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
.++.+..|+.++....-..+.. ... ..+||..+ ||+...|+.|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~--g~s----~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD--GES----KASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH--TCC----HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCC----HHHHHHHH----CcCHHHHHHHHH
Confidence 3445668888886555455554 222 45789999 999999999974
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.19 E-value=12 Score=27.22 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
+++.+..+|.-.|.. .+. ..+||..| |++...|+.+...-|.|.|+.-.
T Consensus 38 L~~~~r~vl~l~~~~--g~s----~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYR--GWS----TAQIATDL----GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTS--CCC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776655 222 35889999 99999999999877777766543
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.35 E-value=15 Score=24.65 Aligned_cols=47 Identities=11% Similarity=-0.083 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
.+++.+..+|.-.|.. .+. ..+||..+ |++...|+.+...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~--g~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL--GLS----YADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTS--CCC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3678888888887655 222 34889999 99999999988765555443
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=50.00 E-value=6.7 Score=24.53 Aligned_cols=42 Identities=7% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHH
Q 022944 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (289)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (289)
++.++...+...+.. . . + ..+||..+ |++...|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~-g-~-s---~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEK-G-H-P---RQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHT-T-C-C---HHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHc-C-C-C---HHHHHHHH----CCCHHHHHHHHHHccc
Confidence 455555555555555 2 2 2 45788888 9999999999975444
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.40 E-value=22 Score=21.54 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhh
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (289)
.++.++...+...+.. .+. ..+||..| +++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~--g~s----~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--NVS----LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--TCC----HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHhh
Confidence 4677776555555554 232 45789999 9999999999854
No 87
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.18 E-value=0.25 Score=41.02 Aligned_cols=30 Identities=0% Similarity=-0.172 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 022944 101 KISARQRWTPTPVQLQILESIFDQGTGTPSK 131 (289)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~ 131 (289)
.+.+|+|+.|+..|++.|+..|+. ++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~-~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA-NPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCC-CCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC-CCCccc
Confidence 457889999999999999999999 899875
No 88
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=48.17 E-value=17 Score=26.16 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
|.+++++...+...|.. ++.+.+..+...+...+ +++...|..+|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 56789999999999976 35677888888877778 888777766653
No 89
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=47.80 E-value=15 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 116 QILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 116 ~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
.++.-.|+. |+||... |--.. =.|||.+||..+.+
T Consensus 16 RiIkiLyQS-NPyP~pe-------------GTRqa-----RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 16 RLIKFLYQS-NPPPNPE-------------GTRQA-----RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHS-SCCCCCC-------------CCTTT-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCCCCCC-------------Cchhh-----hHhHHHHHHHHHHH
Confidence 345556888 9999863 22111 26999999988766
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.08 E-value=31 Score=25.86 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHH
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (289)
...+++.++.+|.-+++- +. ..+||..| ++++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s----~~EIA~~L----~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL----VTEIAKKL----NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC----HHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 456899999999876533 22 25899999 999999998887554443
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=42.96 E-value=32 Score=26.39 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
.+++.+..++.-.|..+ +. ..++|..+ |++...|+.|...-|.+.|+.-
T Consensus 22 ~L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 36788888888876662 32 34889999 9999999999987777766543
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.53 E-value=27 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhh
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (289)
.+++.+..+|. .|.. .+ ...+||..| |++...|+.+...-|.+.|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~~--g~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR--GY----SYREIATIL----SKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTT--TC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777 4444 23 234789999 99999999998876666665443
No 93
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=41.67 E-value=45 Score=24.54 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCC--cccchhhchhh
Q 022944 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQ--ISETNVYNWFQ 157 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~g--Ls~~qV~vWFQ 157 (289)
....++.+++..|...|.. ++.+.+..+...+...+ | ++...|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----g~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----GYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----TCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CCCCCHHHHHHHHH
Confidence 4557899999999999987 46789999988888888 6 56677777774
No 94
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.76 E-value=24 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 107 RWTPTPVQLQILESIFDQGT-GTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~-~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
|..|+.++....-..+.. . .. ...++|..+ ||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~-~~g~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN-SDGA----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT-GGGS----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCC----hHHHHHHHH----CcCHHHHHHHHH
Confidence 356888776555445533 2 22 245889999 999999999974
No 95
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=39.68 E-value=19 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
|.++.++...|+..|.. ++.+.+..+...+...+ +++...|..+|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 51 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 45788899999999966 35678888777776666 888877776663
No 96
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.97 E-value=32 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
..+++.+..+|.-++.- +. ..+||..| ++++..|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g---~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG---LT----NKQIADRM----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTT---CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 45889999999886433 32 35899999 99999999888765555443
No 97
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.25 E-value=43 Score=22.93 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 109 TPTPVQLQILESIFD----QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~----~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
.+++.+..+|.-.|. . .+ ...+||..+ |++...|+.|...-+.+-|
T Consensus 10 ~L~~~er~il~l~~~l~~~~--~~----s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR--EH----TLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS--CC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCC--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 478889999988885 3 12 234889999 9999999998876665555
No 98
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=37.08 E-value=24 Score=25.57 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHhhh
Q 022944 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (289)
Q Consensus 115 l~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (289)
+.++.-.|+. |+||+..-- .-| =.|||.+||..+.+
T Consensus 18 vRiIkiLyQS-NP~P~p~GT-rqa-----------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQS-NPPPNPEGT-RQA-----------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHT-CCCCCCCSC-HHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCCCCCc-hHH-----------------HHHHHHHHHHHHHH
Confidence 3455566888 999986310 001 15899999887765
No 99
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=35.31 E-value=16 Score=29.65 Aligned_cols=46 Identities=13% Similarity=0.292 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHH
Q 022944 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 114 Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
-+....+.|.. ..|-. .....||+.. |++...|+..|.|+-.=..-
T Consensus 33 Il~aa~~lf~~-~G~~~-~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 33 LVNAAIEVLAR-EGARG-LTFRAVDVEA----NVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHH-TCTTT-CCHHHHHHHS----SSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHH-hChhh-ccHHHHHHHc----CCCcchHHHhCCCHHHHHHH
Confidence 35556667888 67643 3456889999 99999999999997654443
No 100
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.91 E-value=40 Score=25.70 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
+++.+..+|.-.|..+ +. ..++|..+ |+++..|+.+...-|.+.|+.-
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 5677788888776552 32 34789999 9999999999987777776544
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.58 E-value=51 Score=22.11 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
-..+++.+..+|.-++ . .+ ...++|..+ +++...|+.+...-+.|.+
T Consensus 9 ~~~L~~~e~~il~~~~-~--g~----s~~eIA~~l----~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV-Q--DK----TTKEIASEL----FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHC
Confidence 4568899999998843 3 33 234799999 9999999988876555443
No 102
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.36 E-value=26 Score=24.99 Aligned_cols=47 Identities=30% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
-..+++.+..+|.-++ . .+ ...+||..| +++...|+.+..+-+.|.+
T Consensus 19 ~~~Lt~~e~~vl~l~~-~--g~----s~~eIA~~l----~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKLIA-Q--GL----PNKMIARRL----DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 3458899999998843 3 23 234899999 9999999988875555543
No 103
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.29 E-value=74 Score=24.86 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCCcccc
Q 022944 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISET 150 (289)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~gLs~~ 150 (289)
+|..+|.+|+..|...|.. ++.+.+..+...+...| |..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCcc
Confidence 4667999999999999976 46788888887777777 65543
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.28 E-value=43 Score=24.04 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
..+++.+..+|.-++ . .+... +||..| ++++..|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~-~--g~s~~----eIA~~l----~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-K--GYSNQ----EIASAS----HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHH-T--TCCTT----HHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHH-c--CCCHH----HHHHHH----CcCHHHHHHHHHHHHHHHC
Confidence 457888999998753 3 33333 789999 9999999988875555443
No 105
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.38 E-value=2e+02 Score=22.36 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC------Ccccchhhchhh
Q 022944 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHG------QISETNVYNWFQ 157 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~------gLs~~qV~vWFQ 157 (289)
+..++.++...|...... ++..+.. +|+..|...+ .++...|..|+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~-~~~~s~~---~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ-NPTMFAW---EIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH-CSSSCHH---HHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-CccchHH---HHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 345677777778777777 5555554 3444442222 467788888875
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.23 E-value=46 Score=23.77 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
.+++.+..+|.-.|..+.. ......+||..| |++...|+.+...-+.|-|
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4678888888888751000 001234789999 9999999998865555544
No 107
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=28.94 E-value=19 Score=28.63 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHH
Q 022944 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (289)
Q Consensus 113 ~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (289)
.-+..-...|.. ..| . .....||+.. |++...|+..|.||-.
T Consensus 19 ~Il~aA~~lf~~-~G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSE-EGL-D-AHLERIAREA----GVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHH-HCT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHh-cCc-C-CCHHHHHHHh----CCChHHHHHHcCCHHH
Confidence 445666677888 678 5 6788999999 9999999999999754
No 108
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.80 E-value=52 Score=26.21 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
+++.+..+|.-.|.. .++ ..+||..| |+++..|+.+...-|.+.|+.-
T Consensus 141 L~~~~r~vl~l~~~~--g~s----~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD--GLS----YEEIAAIM----DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT--CCC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc--CCC----HHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 445555555554433 122 34788999 9999999999987777766543
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.66 E-value=41 Score=22.67 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
.+++.+..+|.-.|.. ..+ ......+||..+ |++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l-~~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGI-DMN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTT-TSS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHcc-CCC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 4678888999888721 000 011235799999 9999999988765444433
No 110
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=27.98 E-value=1.1e+02 Score=24.12 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHH-HHHhcCCcccchhhchhhh
Q 022944 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITV-ELSQHGQISETNVYNWFQN 158 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~~~yPs~~~r~~LA~-~L~~~~gLs~~qV~vWFQN 158 (289)
++.|.++|-+|...|-.++ +. ++-.+..+....|. ... .+++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~-~~~~~q~~la~wa~~~f~--~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL-QNRSGQQDLIEWFREKFG--KDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHS--SCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHC--CCCcHHHHHHHHhh
Confidence 5678999999999998888 55 55555543333222 330 05788889999866
No 111
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=27.77 E-value=45 Score=27.34 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHH
Q 022944 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (289)
Q Consensus 114 Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (289)
-+......|.. ..|-. ....+||+.. |++...|+..|.++-.
T Consensus 35 Il~aA~~lf~~-~G~~~-~t~~~IA~~A----gvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIE-RGYDG-TSMEHLSKAA----GISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHH-HCTTT-CCHHHHHHHH----TSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHH-cCccc-cCHHHHHHHH----CCChhHHHHhCCCHHH
Confidence 46666777877 56654 3456889999 9999999999999754
No 112
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.19 E-value=57 Score=26.79 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHHHHh
Q 022944 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (289)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (289)
.+++.+..+|.-.|.. .+. ..+||..| |++...|+.+...-|.+.|+.-
T Consensus 187 ~L~~~~r~vl~l~~~~--g~s----~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE--ELP----AKEVAKIL----ETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS--CCC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc--CCC----HHHHHHHh----CCCHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777655 222 34789999 9999999999987777766643
No 113
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=26.04 E-value=71 Score=26.88 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHH
Q 022944 104 ARQRWTPTPVQ-LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (289)
Q Consensus 104 rR~Rt~ft~~Q-l~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (289)
++.|...+.++ +..-...|.. ..|-.. ....||+.+ |++..-|+..|.||-.=.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~-~G~~~~-s~~~IA~~a----Gvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDT-VGERGL-TFRALAERL----ATGPGAIYWHITGKAELL 64 (237)
T ss_dssp ------CCHHHHHHHHHHHHHH-TTTTTC-CHHHHHHHH----TSCGGGGGGTCCCHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHh-cCcccC-CHHHHHHHH----CCChHHHHHhcCCHHHHH
Confidence 34445555544 5556667777 666543 455899999 999999999999975443
No 114
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=25.41 E-value=54 Score=25.97 Aligned_cols=42 Identities=12% Similarity=0.459 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHH
Q 022944 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (289)
Q Consensus 114 Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (289)
-+......|.. ..|-. ....+||+.. |++...|+.+|.+|-.
T Consensus 36 Il~aa~~l~~~-~G~~~-~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 36 IIKVATELFRE-KGYYA-TSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHH-TCTTT-CCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHH-cCccc-CcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 35566666888 67653 3456889999 9999999999999854
No 115
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=25.29 E-value=70 Score=25.50 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022944 41 KVMTDEQLETLRKQIAVYATICEQLVE 67 (289)
Q Consensus 41 ~~~t~~q~~~lr~qi~~~~~ic~~l~~ 67 (289)
..++.++++++.+|..+...||...-.
T Consensus 51 ~~l~~Ed~~RY~kQ~~lv~~I~~~fE~ 77 (126)
T 2wl8_A 51 ESLPPEQFEKYQEQHSVMCKICEQFEA 77 (126)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999998554
No 116
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.07 E-value=35 Score=24.11 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 107 RWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
-..++.+++..|...|.. ++.+.+..+...+...+ |++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc----CcCHHHHHHHHH
Confidence 345788899999999976 35678888887777777 888877777774
No 117
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=23.84 E-value=90 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHH-hhcCCCCC-HHHHHHHHHHHHhcCCcccchhhchhh
Q 022944 107 RWTPTPVQLQILESIF-DQGTGTPS-KQKIKEITVELSQHGQISETNVYNWFQ 157 (289)
Q Consensus 107 Rt~ft~~Ql~~LE~~F-~~~~~yPs-~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (289)
+..|+.++....-..+ ..+..+++ .....++|..+ ||+...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 3468887765444433 33101222 14567899999 999999999964
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.45 E-value=42 Score=22.99 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
+++.+..+|.-++ . .+. ..+||..+ +++...|+.+..+-+.|.+
T Consensus 17 L~~~e~~vl~l~~-~--g~s----~~eIA~~l----~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVV-A--GLP----NKSIAYDL----DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHT-T--TCC----HHHHHHHT----TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-c--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 5677778887643 2 232 34789999 9999999988876555544
No 119
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.24 E-value=51 Score=26.42 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHHHHH
Q 022944 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (289)
Q Consensus 112 ~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (289)
..-+..-...|.+ ..|-. .....||... |++..-|+..|.|+-.=..
T Consensus 14 ~~Il~aA~~lF~~-~Gy~~-ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 14 QVALQTAMELFWR-QGYEG-TSITDLTKAL----GINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHH-HTTTT-CCHHHHHHHH----TCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHH-hCccc-CCHHHHHHHh----CCChHHHHHHhCCHHHHHH
Confidence 3445666677888 67754 3456889999 9999999999998765443
No 120
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=22.07 E-value=1.1e+02 Score=20.68 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhcCCc--ccch---hhchh
Q 022944 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQI--SETN---VYNWF 156 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~~~yPs~~~r~~LA~~L~~~~gL--s~~q---V~vWF 156 (289)
..++++++..|...|.. ++.+.+..+...+...+ |. +... |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKL----GQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHT----SCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH----cCCCCHHHHHHHHHHH
Confidence 45778889999999865 35688888887777777 64 4445 55555
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.06 E-value=76 Score=23.06 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhhhHH
Q 022944 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (289)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (289)
......+|+.++.+|.-.+ . .+. ..+||..| ++++..|+....+=+.
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~--G~s----~~eIA~~L----~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-K--GFT----NQEIADAL----HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp -----CCCHHHHHHHHHHH-T--TCC----HHHHHHHH----TCCHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH-c--CCC----HHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 3345679999999998776 3 232 45899999 9999999877765433
No 122
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.62 E-value=80 Score=23.78 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCcccchhhchhhh
Q 022944 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (289)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (289)
..++.++...+...+.. .+. ..+||..| |++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~s----~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NVS----LHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TCC----HHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHc
Confidence 45788887777777755 232 45789999 9999999999964
No 123
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.78 E-value=34 Score=27.21 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=18.0
Q ss_pred HhcCCcccchhhchhhhhHHHHHH
Q 022944 142 SQHGQISETNVYNWFQNRRARSKR 165 (289)
Q Consensus 142 ~~~~gLs~~qV~vWFQNRRaK~Kr 165 (289)
+...|+++..|+.+...-|.+.|+
T Consensus 158 A~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 158 AAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 334499999999998877766655
Done!