BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022946
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 160/233 (68%), Gaps = 2/233 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 27 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 86
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ ++
Sbjct: 87 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPY--LEQMVQGVK 144
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 145 AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 204
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD 282
+AGI VCSGGI+GLGE +DR G ESVPIN L+ VKGTPL D
Sbjct: 205 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLAD 257
>pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde
From Thermotoga Maritima In Complex With Thiocyanate
Length = 348
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 15/200 (7%)
Query: 50 RHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
R +++++ +K SI D + LF A R + EV ++ + C ++C YC
Sbjct: 12 RREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYC 70
Query: 107 PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF--NQILEY 164
R D + MT + +++ A+ A + G+ + + G + + I +
Sbjct: 71 --GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS------GEDPYYMPDVISDI 122
Query: 165 VKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITTRSYDERLE 223
VK+I+ MG+ V +LG + + K+AG Y +T+ + K+ S++ RL
Sbjct: 123 VKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLN 182
Query: 224 TLKHVREAGINVCSGGIIGL 243
L ++E G +G ++GL
Sbjct: 183 XLLTLKELGYETGAGSMVGL 202
>pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
From Thermotoga Maritima
pdb|3IIX|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With Methionine And
5'deoxyadenosine
Length = 348
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 50 RHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
R +++++ +K SI D + LF A R + EV ++ + C ++C YC
Sbjct: 12 RREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYC 70
Query: 107 PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166
R D + MT + +++ A+ A + G+ + + D + I VK
Sbjct: 71 --GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSG-EDPYXMPDVISDI---VK 124
Query: 167 DIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITTRSYDERLETL 225
+I+ MG+ V +LG + + K+AG Y +T+ + K+ S++ RL L
Sbjct: 125 EIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXL 184
Query: 226 KHVREAGINVCSGGIIGL 243
++E G +G ++GL
Sbjct: 185 LTLKELGYETGAGSMVGL 202
>pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With S-Adenosyl-L-Methionine
Length = 348
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 50 RHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
R +++++ +K SI D + LF A R + EV ++ + C ++C YC
Sbjct: 12 RREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYC 70
Query: 107 PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166
R D + MT + +++ A+ A + G+ + + D + I VK
Sbjct: 71 --GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSG-EDPYXMPDVISDI---VK 124
Query: 167 DIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITTRSYDERLETL 225
+I+ MG+ V +LG + + K+AG Y +T+ + K+ S++ RL L
Sbjct: 125 EIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXL 184
Query: 226 KHVREAGINVCSGGIIGL 243
++E G +G ++GL
Sbjct: 185 LTLKELGYETGAGSMVGL 202
>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
Length = 350
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158
C CS+C + R + + +T + + + + K AG F M T+G +
Sbjct: 71 CKNQCSFCYYNCRNEIN---RYRLTMEEIKETCKTLKGAG---FHMVDL---TMGEDPYY 121
Query: 159 ----NQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG---LTAYNHNLDTSREFYS 210
N+ +E V+ +++ +G+ + + G+++ ++ ++ G L Y DT E Y
Sbjct: 122 YEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDT--ELYR 179
Query: 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPIN 270
K+ +S+D R+ + ++ G V G + G+G E + + V +
Sbjct: 180 KLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTI--LSLRGMSTNDPDMVRVM 237
Query: 271 ALLAVKGTPLQ 281
L +GTPL+
Sbjct: 238 TFLPQEGTPLE 248
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 72 HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAA 131
HGA H H ++ R++Q ++ + GG E Y + Y G + + + +Q A
Sbjct: 212 HGADPH-HGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRA 270
Query: 132 QKAK----EAGSTRFCMGAAWRDTI 152
Q+A G T + AA RD +
Sbjct: 271 QRAAVDAVRPGVTAAQVDAAARDVL 295
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 137 AGSTRFCMGAA--------WRDTIGRKTN---------FNQILEY-VKDIRDMGMEV-CC 177
A +FC+ A RD +G + N NQ Y V+D+R + E
Sbjct: 31 ARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVV 90
Query: 178 TLGM--LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235
LG L+ + E K ++ H++ RE +K + + D R +TL +RE +
Sbjct: 91 ALGETGLDYYYTPETKVRQQESFIHHIQIGREL-NKPVIVHTRDARADTLAILREEKVTD 149
Query: 236 CSG 238
C G
Sbjct: 150 CGG 152
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 96 TGGCSEDCSYC-PQSSRYDTGV--KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAA----W 148
T C+ C YC P+ D V +L+T D + + A+ E G + +
Sbjct: 21 TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR 80
Query: 149 RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208
RD NQI I D+G+ T G+L K +L AGL N +LD +
Sbjct: 81 RDLDVLIAKLNQI----DGIEDIGL---TTNGLLLKKHGQKLYDAGLRRINVSLDAIDDT 133
Query: 209 YSKIITTRSYDER--LETLKHVREAGINVCSGGIIGLG 244
+ I R+ LE + + G+NV +I G
Sbjct: 134 LFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG 171
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 96 TGGCSEDCSYC-PQSSRYDTGV--KGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAW-- 148
T C+ C YC P+ D V +L+T D + + A+ E G R G
Sbjct: 21 TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR 80
Query: 149 RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208
RD NQI I D+G+ T G+L K +L AGL N +LD +
Sbjct: 81 RDLDVLIAKLNQI----DGIEDIGL---TTNGLLLKKHGQKLYDAGLRRINVSLDAIDDT 133
Query: 209 YSKIITTRSYDER--LETLKHVREAGINVCSGGIIGLG 244
+ I R+ LE + + G+NV +I G
Sbjct: 134 LFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG 171
>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|B Chain B, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|C Chain C, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
Length = 373
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 162 LEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDER 221
E V +++ + M +GM H+ I + G+T + +L T+ + T SY+E
Sbjct: 285 FETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITN-------MCTMSYEEE 337
Query: 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVG 252
E C I+G+G+ E +G
Sbjct: 338 EEH-----------CHDSIVGVGKNREKTLG 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,165,095
Number of Sequences: 62578
Number of extensions: 264816
Number of successful extensions: 541
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 10
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)